AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013493.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013493.01.T01 MTR_8g068690 71.212 198 25 1 1 166 1 198 8.03e-95 276
MsG0380013493.01.T01 MTR_8g068740 72.021 193 21 2 1 160 1 193 3.30e-93 272
MsG0380013493.01.T01 MTR_8g068690 71.212 198 25 1 1 166 1 198 3.39e-93 275
MsG0380013493.01.T01 MTR_8g068730 72.021 193 21 2 1 160 1 193 3.18e-92 272
MsG0380013493.01.T01 MTR_8g068750 70.899 189 22 2 1 156 1 189 6.43e-89 265
MsG0380013493.01.T01 MTR_0591s0010 69.841 189 24 2 1 156 1 189 5.91e-85 254
MsG0380013493.01.T01 MTR_8g068600 82.946 129 22 0 28 156 35 163 8.61e-76 228
MsG0380013493.01.T01 MTR_8g068870 82.946 129 22 0 28 156 47 175 3.46e-73 224
MsG0380013493.01.T01 MTR_8g068570 69.281 153 14 2 1 120 1 153 1.80e-63 198
MsG0380013493.01.T01 MTR_7g118320 56.805 169 41 1 20 156 6 174 3.50e-61 193
MsG0380013493.01.T01 MTR_8g068590 85.263 95 14 0 28 122 40 134 5.80e-55 171
MsG0380013493.01.T01 MTR_8g068760 82.292 96 17 0 28 123 48 143 4.31e-51 164
MsG0380013493.01.T01 MTR_6g078850 64.885 131 44 2 28 156 65 195 5.57e-44 152
MsG0380013493.01.T01 MTR_7g118300 49.219 128 62 1 29 156 63 187 1.11e-33 122
MsG0380013493.01.T01 MTR_3g092900 42.188 128 72 1 29 156 50 175 1.06e-28 109
MsG0380013493.01.T01 MTR_5g098170 42.400 125 69 2 29 152 49 171 6.38e-25 99.0
MsG0380013493.01.T01 MTR_8g024160 37.500 144 76 2 15 156 9 140 1.46e-21 89.4
MsG0380013493.01.T01 MTR_7g012040 29.508 122 83 2 36 156 61 180 2.53e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013493.01.T01 AT5G54160 41.600 125 67 2 34 156 53 173 8.37e-27 104
MsG0380013493.01.T01 AT1G77520 40.000 125 70 3 31 150 62 186 4.82e-23 94.4
MsG0380013493.01.T01 AT1G76790 39.706 136 69 4 27 156 50 178 2.41e-20 86.7
MsG0380013493.01.T01 AT5G53810 37.405 131 77 3 31 156 59 189 1.32e-19 84.7
MsG0380013493.01.T01 AT1G21110 39.098 133 72 4 25 152 54 182 1.96e-18 81.6
MsG0380013493.01.T01 AT1G33030 37.864 103 60 2 55 156 62 161 2.44e-18 79.7
MsG0380013493.01.T01 AT1G21130 39.098 133 72 4 25 152 54 182 2.45e-18 80.5
MsG0380013493.01.T01 AT1G33030 37.864 103 60 2 55 156 62 161 2.49e-18 80.1
MsG0380013493.01.T01 AT1G21120 39.098 133 72 4 25 152 54 182 2.55e-18 81.3
MsG0380013493.01.T01 AT1G21120 39.098 133 72 4 25 152 102 230 3.69e-18 80.9
MsG0380013493.01.T01 AT1G21130 39.098 133 72 4 25 152 54 182 5.21e-18 80.1
MsG0380013493.01.T01 AT1G33030 36.036 111 67 2 55 164 62 169 8.63e-18 79.3
MsG0380013493.01.T01 AT1G21100 39.200 125 67 4 33 152 62 182 2.52e-16 75.5
MsG0380013493.01.T01 AT1G63140 37.391 115 67 3 36 145 87 201 1.87e-14 69.7
MsG0380013493.01.T01 AT1G63140 37.391 115 67 3 36 145 87 201 1.97e-14 69.7
MsG0380013493.01.T01 AT1G63140 37.391 115 67 3 36 145 67 181 3.09e-14 69.7
MsG0380013493.01.T01 AT1G63140 37.391 115 67 3 36 145 87 201 3.37e-14 69.7
MsG0380013493.01.T01 AT1G77530 36.066 122 73 3 36 152 67 188 2.63e-13 66.2
MsG0380013493.01.T01 AT1G77530 36.066 122 73 3 36 152 67 188 6.02e-13 65.9

Find 34 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAATGCGATCCAACATTT+TGG 0.214953 3:-39335634 None:intergenic
TCGTATTTCTTGCAACAATT+TGG 0.226985 3:+39335605 MsG0380013493.01.T01:CDS
AATTCTGATGGTGTTTCATT+AGG 0.271958 3:+39335771 MsG0380013493.01.T01:CDS
AATGAAACACCATCAGAATT+AGG 0.300158 3:-39335768 None:intergenic
ATAAAGAGATTGCATCCTTT+AGG 0.339043 3:-39340494 None:intergenic
GACTTAGGTGTGAATGGAAA+TGG 0.390497 3:+39335404 MsG0380013493.01.T01:CDS
CTTGCTCTTCTTGCATCCCA+TGG 0.398542 3:+39335654 MsG0380013493.01.T01:CDS
AGAAAGTTGAGCATCTTTAC+CGG 0.400069 3:-39335565 None:intergenic
GTTGGCTTTGTATCAAGATA+AGG 0.423708 3:+39335800 MsG0380013493.01.T01:CDS
TGTTTCATTAGGACCCTTGT+TGG 0.426965 3:+39335782 MsG0380013493.01.T01:CDS
GTCCCATTCAACATGGTTCA+TGG 0.443754 3:+39339989 MsG0380013493.01.T01:CDS
TGCGTTTGATTATGCAAGCT+TGG 0.452740 3:+39340018 MsG0380013493.01.T01:CDS
CTAAGTCTATCACATTTGAA+TGG 0.474913 3:-39335388 None:intergenic
GTGATAGACTTAGGTGTGAA+TGG 0.483111 3:+39335398 MsG0380013493.01.T01:CDS
CATTCAAATGTGATAGACTT+AGG 0.487343 3:+39335389 MsG0380013493.01.T01:CDS
ATTCAAGATGAACAAAAGCT+TGG 0.489419 3:+39335696 MsG0380013493.01.T01:CDS
ATAGTATGACTCCTATTGCT+AGG 0.497886 3:+39335736 MsG0380013493.01.T01:CDS
TTTGGATGCTCCCAAAATGT+TGG 0.515517 3:+39335623 MsG0380013493.01.T01:CDS
TGCCATGAACCATGTTGAAT+GGG 0.522273 3:-39339991 None:intergenic
TCGAATTGTATTCTTAAGCT+CGG 0.529229 3:-39339957 None:intergenic
TTAAGAATACAATTCGAGAA+GGG 0.552158 3:+39339963 MsG0380013493.01.T01:CDS
GTGCCATGAACCATGTTGAA+TGG 0.556197 3:-39339992 None:intergenic
TATGTTGAAAGTGTACCTAA+AGG 0.572031 3:+39340479 MsG0380013493.01.T01:CDS
ATCTTGATACAAAGCCAACA+AGG 0.584443 3:-39335796 None:intergenic
GTGTGAATGGAAATGGAGAG+AGG 0.584918 3:+39335411 MsG0380013493.01.T01:CDS
GTAGGAGTTGAACACGTTGG+CGG 0.587106 3:+39340453 MsG0380013493.01.T01:intron
CTTAAGAATACAATTCGAGA+AGG 0.594263 3:+39339962 MsG0380013493.01.T01:CDS
CATACTATAAAGTCTATGAA+AGG 0.601040 3:-39335721 None:intergenic
TAAGAATACAATTCGAGAAG+GGG 0.607299 3:+39339964 MsG0380013493.01.T01:CDS
TAAACACTTTAACACACCAT+GGG 0.639948 3:-39335670 None:intergenic
AAGAATACAATTCGAGAAGG+GGG 0.659327 3:+39339965 MsG0380013493.01.T01:CDS
GTAAACACTTTAACACACCA+TGG 0.668763 3:-39335671 None:intergenic
TTGGTAGGAGTTGAACACGT+TGG 0.674780 3:+39340450 MsG0380013493.01.T01:intron
TCTTGATACAAAGCCAACAA+GGG 0.683823 3:-39335795 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAATCATATTTCA+AGG + Chr3:39336345-39336364 MsG0380013493.01.T01:intron 10.0%
!! AAAAAAATGAAATTAACATA+GGG - Chr3:39338718-39338737 None:intergenic 10.0%
!! AAAATAAAAAGAAAAAATAC+AGG + Chr3:39338074-39338093 MsG0380013493.01.T01:intron 10.0%
!! ATTATATACAACTATATAAA+AGG - Chr3:39336869-39336888 None:intergenic 10.0%
!! TAAAAAAATGAAATTAACAT+AGG - Chr3:39338719-39338738 None:intergenic 10.0%
!! TAAATACAACTATATAAAAA+GGG - Chr3:39336752-39336771 None:intergenic 10.0%
!! TTAAATACAACTATATAAAA+AGG - Chr3:39336753-39336772 None:intergenic 10.0%
!!! AAAAATATATTTTTTTAGAG+GGG + Chr3:39337490-39337509 MsG0380013493.01.T01:intron 10.0%
!!! ATTTTTATTTTTTTGAAAGA+AGG + Chr3:39340645-39340664 MsG0380013493.01.T01:three_prime_UTR 10.0%
!!! CAAAAATATATTTTTTTAGA+GGG + Chr3:39337489-39337508 MsG0380013493.01.T01:intron 10.0%
!!! TCAAAAATATATTTTTTTAG+AGG + Chr3:39337488-39337507 MsG0380013493.01.T01:intron 10.0%
!!! TCAATTTTATAACAAAATAA+GGG - Chr3:39338663-39338682 None:intergenic 10.0%
!!! TTGTTATTAATATTATAAAG+TGG - Chr3:39338541-39338560 None:intergenic 10.0%
!!! TTGTTTTCTAATATTTATTT+TGG + Chr3:39339403-39339422 MsG0380013493.01.T01:intron 10.0%
!! AAATACAACTATATAAAAAG+GGG - Chr3:39336751-39336770 None:intergenic 15.0%
!! ATAGTCAAAAAGAAAAATAT+GGG - Chr3:39339602-39339621 None:intergenic 15.0%
!! TAAACGATGTTAAATTATAA+GGG - Chr3:39338695-39338714 None:intergenic 15.0%
!! TGTGTTTAGTTAAAAATATA+GGG - Chr3:39338635-39338654 None:intergenic 15.0%
!!! AAAATATATTTTTTTAGAGG+GGG + Chr3:39337491-39337510 MsG0380013493.01.T01:intron 15.0%
!!! AATAGTTTTTTTTTCATTGT+GGG + Chr3:39339007-39339026 MsG0380013493.01.T01:intron 15.0%
!!! ATAATTTAAAGGATTTTTGA+AGG - Chr3:39336540-39336559 None:intergenic 15.0%
!!! ATTTTCAATTGAAATGAATT+TGG + Chr3:39339113-39339132 MsG0380013493.01.T01:intron 15.0%
!!! GAAACTTTAACTTAATAAAA+TGG + Chr3:39338851-39338870 MsG0380013493.01.T01:intron 15.0%
!!! GTCAATTTTATAACAAAATA+AGG - Chr3:39338664-39338683 None:intergenic 15.0%
!!! GTTCATATCAATTTTTTTTA+GGG - Chr3:39339727-39339746 None:intergenic 15.0%
!!! TGTTCATATTCAATTTTTAA+GGG - Chr3:39339700-39339719 None:intergenic 15.0%
!!! TTGTTCATATTCAATTTTTA+AGG - Chr3:39339701-39339720 None:intergenic 15.0%
!!! TTTCTAATATTTATTTTGGT+GGG + Chr3:39339407-39339426 MsG0380013493.01.T01:intron 15.0%
!!! TTTTCTAATATTTATTTTGG+TGG + Chr3:39339406-39339425 MsG0380013493.01.T01:intron 15.0%
!! AAAGTGCAAAATGAAATTAA+GGG - Chr3:39338772-39338791 None:intergenic 20.0%
!! AAATGAATTTGGATAAAAAG+AGG + Chr3:39339124-39339143 MsG0380013493.01.T01:intron 20.0%
!! AAGAATGTGTAATTTCTAAA+AGG - Chr3:39338282-39338301 None:intergenic 20.0%
!! AAGTGTCAAATGATTATAAT+GGG - Chr3:39336652-39336671 None:intergenic 20.0%
!! AATGAATTTGGATAAAAAGA+GGG + Chr3:39339125-39339144 MsG0380013493.01.T01:intron 20.0%
!! AATGATTATATTTCAAAGAG+AGG + Chr3:39337133-39337152 MsG0380013493.01.T01:intron 20.0%
!! ACTTGAAAAACTATTTATGT+TGG + Chr3:39340431-39340450 MsG0380013493.01.T01:intron 20.0%
!! AGTAAAAGAGAATATAGAAA+TGG - Chr3:39338942-39338961 None:intergenic 20.0%
!! AGTATGACTATAAAAAACAT+CGG + Chr3:39338411-39338430 MsG0380013493.01.T01:intron 20.0%
!! ATAGAGAATGGATAATTTAA+AGG - Chr3:39336551-39336570 None:intergenic 20.0%
!! ATCTTAAAAAAGAAAAACTC+AGG - Chr3:39337857-39337876 None:intergenic 20.0%
!! ATGATTATATTTCAAAGAGA+GGG + Chr3:39337134-39337153 MsG0380013493.01.T01:intron 20.0%
!! ATTTCTTGGTACAATTTATT+GGG - Chr3:39339658-39339677 None:intergenic 20.0%
!! CTGTGTTTAGTTAAAAATAT+AGG - Chr3:39338636-39338655 None:intergenic 20.0%
!! GAATAGATTAAATAATGAGA+AGG - Chr3:39335854-39335873 None:intergenic 20.0%
!! GATAGTCAAAAAGAAAAATA+TGG - Chr3:39339603-39339622 None:intergenic 20.0%
!! GTAAAAGAGAATATAGAAAT+GGG - Chr3:39338941-39338960 None:intergenic 20.0%
!! GTAAACGATGTTAAATTATA+AGG - Chr3:39338696-39338715 None:intergenic 20.0%
!! GTGTTTAGTTAAAAATATAG+GGG - Chr3:39338634-39338653 None:intergenic 20.0%
!! TAAGTGTCAAATGATTATAA+TGG - Chr3:39336653-39336672 None:intergenic 20.0%
!! TAGTCAAAAAGAAAAATATG+GGG - Chr3:39339601-39339620 None:intergenic 20.0%
!! TATACCAAAATTTATGAAGA+AGG + Chr3:39340081-39340100 MsG0380013493.01.T01:intron 20.0%
!! TATTTCTTGGTACAATTTAT+TGG - Chr3:39339659-39339678 None:intergenic 20.0%
!! TCAATATTTCATATTAGAGA+AGG - Chr3:39337036-39337055 None:intergenic 20.0%
!! TGGGATAAATATTTATTACA+AGG + Chr3:39338216-39338235 MsG0380013493.01.T01:intron 20.0%
!! TGTGTTTAAAAAACTAAAGA+GGG + Chr3:39339156-39339175 MsG0380013493.01.T01:intron 20.0%
!! TTCATAATTAGAGAGATTAT+AGG - Chr3:39336233-39336252 None:intergenic 20.0%
!! TTGTTACAAAAGATACAAAA+TGG - Chr3:39336326-39336345 None:intergenic 20.0%
!! TTTAACATTAATGATCGATA+GGG - Chr3:39339221-39339240 None:intergenic 20.0%
!!! AAAATCATTGCAATTTTCTA+TGG - Chr3:39339772-39339791 None:intergenic 20.0%
!!! AATTTTGGTATAATTGATCA+TGG - Chr3:39340073-39340092 None:intergenic 20.0%
!!! ATAGGAAATTTGTTTTGTTT+GGG - Chr3:39336215-39336234 None:intergenic 20.0%
!!! ATAGTTTTTTTTTCATTGTG+GGG + Chr3:39339008-39339027 MsG0380013493.01.T01:intron 20.0%
!!! ATTGTTGTTTTTTGCTATAA+TGG + Chr3:39340570-39340589 MsG0380013493.01.T01:three_prime_UTR 20.0%
!!! ATTTTTTAGGAGAGAAAAAT+AGG - Chr3:39336023-39336042 None:intergenic 20.0%
!!! CAATAGTTTTTTTTTCATTG+TGG + Chr3:39339006-39339025 MsG0380013493.01.T01:intron 20.0%
!!! GGTTCATATCAATTTTTTTT+AGG - Chr3:39339728-39339747 None:intergenic 20.0%
!!! GTTCATATTCAATTTTTAAG+GGG - Chr3:39339699-39339718 None:intergenic 20.0%
!!! TAGATAAGTTAGAGATTTTT+TGG - Chr3:39336969-39336988 None:intergenic 20.0%
!!! TATAGGAAATTTGTTTTGTT+TGG - Chr3:39336216-39336235 None:intergenic 20.0%
!!! TATTTTGTGTATTTTATTCG+AGG + Chr3:39336677-39336696 MsG0380013493.01.T01:intron 20.0%
!!! TTATATCCTTTTATGTCTTT+TGG + Chr3:39335986-39336005 MsG0380013493.01.T01:intron 20.0%
!!! TTCTAATATTTATTTTGGTG+GGG + Chr3:39339408-39339427 MsG0380013493.01.T01:intron 20.0%
!!! TTTAGATTTTTTGTTGATCT+TGG - Chr3:39337433-39337452 None:intergenic 20.0%
!!! TTTTTTAGGAGAGAAAAATA+GGG - Chr3:39336022-39336041 None:intergenic 20.0%
! AAACATTTAAAGATCATACC+AGG - Chr3:39340261-39340280 None:intergenic 25.0%
! AAATTGATACCATGTATATG+AGG - Chr3:39340201-39340220 None:intergenic 25.0%
! AATATGGGGCTAAATATTAA+AGG - Chr3:39339587-39339606 None:intergenic 25.0%
! AATTGATACCATGTATATGA+GGG - Chr3:39340200-39340219 None:intergenic 25.0%
! ATCCCATGTATAATTTACAA+AGG - Chr3:39338202-39338221 None:intergenic 25.0%
! ATCCTAAAAAAGAAAACTCA+TGG - Chr3:39337818-39337837 None:intergenic 25.0%
! ATCCTAATAAATGAAGAAAC+TGG - Chr3:39339900-39339919 None:intergenic 25.0%
! ATGAATTTGGATAAAAAGAG+GGG + Chr3:39339126-39339145 MsG0380013493.01.T01:intron 25.0%
! CAAAGTGCAAAATGAAATTA+AGG - Chr3:39338773-39338792 None:intergenic 25.0%
! CATACTATAAAGTCTATGAA+AGG - Chr3:39335724-39335743 None:intergenic 25.0%
! CTCCTTTGTAAATTATACAT+GGG + Chr3:39338197-39338216 MsG0380013493.01.T01:intron 25.0%
! CTTACATATAAATCGTAATG+TGG + Chr3:39340333-39340352 MsG0380013493.01.T01:intron 25.0%
! GAAAAACTATTTATGTTGGT+AGG + Chr3:39340435-39340454 MsG0380013493.01.T01:intron 25.0%
! GTGTGTTTAAAAAACTAAAG+AGG + Chr3:39339155-39339174 MsG0380013493.01.T01:intron 25.0%
! GTTTAACATTAATGATCGAT+AGG - Chr3:39339222-39339241 None:intergenic 25.0%
! TAAAAAAGAAAAACTCAGGA+AGG - Chr3:39337853-39337872 None:intergenic 25.0%
! TAATGTCAAAATACTGTCAA+CGG + Chr3:39337251-39337270 MsG0380013493.01.T01:intron 25.0%
! TACGACATCTTTATCATTAA+CGG + Chr3:39338492-39338511 MsG0380013493.01.T01:intron 25.0%
! TAGAGAAATCTAATGTGATA+TGG - Chr3:39339456-39339475 None:intergenic 25.0%
! TAGTTGTAATACTTCATACA+CGG + Chr3:39338462-39338481 MsG0380013493.01.T01:intron 25.0%
! TATTCCGTTAATGCATATAA+GGG - Chr3:39339343-39339362 None:intergenic 25.0%
! TCATTAACATTCATAGAGAA+TGG - Chr3:39336563-39336582 None:intergenic 25.0%
! TCCTAAAAAAGAAAACTCAT+GGG - Chr3:39337817-39337836 None:intergenic 25.0%
! TCTCCTTTGTAAATTATACA+TGG + Chr3:39338196-39338215 MsG0380013493.01.T01:intron 25.0%
! TGATCAACAAAAACACAATT+TGG + Chr3:39337053-39337072 MsG0380013493.01.T01:intron 25.0%
! TTAAGAATACAATTCGAGAA+GGG + Chr3:39339963-39339982 MsG0380013493.01.T01:CDS 25.0%
! TTATTCCGTTAATGCATATA+AGG - Chr3:39339344-39339363 None:intergenic 25.0%
! TTGTTACAAAAGACACAAAT+TGG - Chr3:39337115-39337134 None:intergenic 25.0%
!! AAAGGGTAAGATTGTATTTT+TGG - Chr3:39335941-39335960 None:intergenic 25.0%
!! AGAACCTTCTTCATAAATTT+TGG - Chr3:39340088-39340107 None:intergenic 25.0%
!! ATAATTGTTTCTTCATGCTT+AGG + Chr3:39339933-39339952 MsG0380013493.01.T01:intron 25.0%
!! TGTTATTTAAGAAGACCTTA+AGG - Chr3:39338605-39338624 None:intergenic 25.0%
!! TGTTCGTATTCATTATTTCT+TGG - Chr3:39339672-39339691 None:intergenic 25.0%
!!! CATATCAATTTTTTTTAGGG+AGG - Chr3:39339724-39339743 None:intergenic 25.0%
!!! GTGTTTTAAGAAAATCTCAA+TGG + Chr3:39339184-39339203 MsG0380013493.01.T01:intron 25.0%
!!! TGTGAAAATTTGTTTTGATC+AGG - Chr3:39336147-39336166 None:intergenic 25.0%
!!! TTTTAAGAAAATCTCAATGG+AGG + Chr3:39339187-39339206 MsG0380013493.01.T01:intron 25.0%
!!! TTTTGCAATTAAGTTGAATG+AGG - Chr3:39339042-39339061 None:intergenic 25.0%
!!! TTTTGCTATAATGGATAACT+TGG + Chr3:39340579-39340598 MsG0380013493.01.T01:three_prime_UTR 25.0%
!!! TTTTTAGGAGAGAAAAATAG+GGG - Chr3:39336021-39336040 None:intergenic 25.0%
!!! TTTTTTAGCAATTTACTTCG+TGG + Chr3:39338732-39338751 MsG0380013493.01.T01:intron 25.0%
AAAAAAGAAAACTCATGGGA+AGG - Chr3:39337813-39337832 None:intergenic 30.0%
AAATTAAACCACCTTGATAG+TGG - Chr3:39338830-39338849 None:intergenic 30.0%
AAGAGAATATAGAAATGGGA+AGG - Chr3:39338937-39338956 None:intergenic 30.0%
AATGAAACACCATCAGAATT+AGG - Chr3:39335771-39335790 None:intergenic 30.0%
ACGTGTCAAAAATGAAGAAA+GGG - Chr3:39335958-39335977 None:intergenic 30.0%
ACTGAGTCTATTTGATGAAA+AGG + Chr3:39337782-39337801 MsG0380013493.01.T01:intron 30.0%
AGAAAACAATTAGCATCAGA+GGG - Chr3:39339392-39339411 None:intergenic 30.0%
AGCCAGTTTCTTCATTTATT+AGG + Chr3:39339895-39339914 MsG0380013493.01.T01:intron 30.0%
ATAAAGAGATTGCATCCTTT+AGG - Chr3:39340497-39340516 None:intergenic 30.0%
ATGGTTTCAAGGACATAAAA+AGG + Chr3:39340119-39340138 MsG0380013493.01.T01:intron 30.0%
ATTCAAGATGAACAAAAGCT+TGG + Chr3:39335696-39335715 MsG0380013493.01.T01:CDS 30.0%
ATTCCGTTAATGCATATAAG+GGG - Chr3:39339342-39339361 None:intergenic 30.0%
ATTTAAGAAGACCTTAAGGA+AGG - Chr3:39338601-39338620 None:intergenic 30.0%
CAAAATTCATGTTGCAATGT+TGG - Chr3:39339831-39339850 None:intergenic 30.0%
CATTCAAATGTGATAGACTT+AGG + Chr3:39335389-39335408 MsG0380013493.01.T01:CDS 30.0%
CTAAGTCTATCACATTTGAA+TGG - Chr3:39335391-39335410 None:intergenic 30.0%
CTTAAAAAAGAAAAACGCGT+TGG - Chr3:39337896-39337915 None:intergenic 30.0%
CTTAAGAATACAATTCGAGA+AGG + Chr3:39339962-39339981 MsG0380013493.01.T01:CDS 30.0%
GAGAATGGAATAAAAAGTAG+AGG - Chr3:39339513-39339532 None:intergenic 30.0%
GCTAAATATTAAAGGCAAAG+TGG - Chr3:39339579-39339598 None:intergenic 30.0%
GTTGAACCAAAAGACATAAA+AGG - Chr3:39335995-39336014 None:intergenic 30.0%
TAAACACTTTAACACACCAT+GGG - Chr3:39335673-39335692 None:intergenic 30.0%
TAAGAATACAATTCGAGAAG+GGG + Chr3:39339964-39339983 MsG0380013493.01.T01:CDS 30.0%
TAGAAAACAATTAGCATCAG+AGG - Chr3:39339393-39339412 None:intergenic 30.0%
TCGAATTGTATTCTTAAGCT+CGG - Chr3:39339960-39339979 None:intergenic 30.0%
TCGTATTTCTTGCAACAATT+TGG + Chr3:39335605-39335624 MsG0380013493.01.T01:CDS 30.0%
TGTCTGTGTTTGATTCTATT+TGG + Chr3:39338974-39338993 MsG0380013493.01.T01:intron 30.0%
TTCTCATATGCTATACAACT+TGG + Chr3:39335470-39335489 MsG0380013493.01.T01:intron 30.0%
! AATTCTGATGGTGTTTCATT+AGG + Chr3:39335771-39335790 MsG0380013493.01.T01:CDS 30.0%
! ATGGGACAAAATTGTGTTTT+CGG - Chr3:39336634-39336653 None:intergenic 30.0%
! GTATCAAGATAAGGTTTTCT+TGG + Chr3:39335809-39335828 MsG0380013493.01.T01:CDS 30.0%
! TATAGAAATGGGAAGGATTT+TGG - Chr3:39338930-39338949 None:intergenic 30.0%
! TATGTTGAAAGTGTACCTAA+AGG + Chr3:39340479-39340498 MsG0380013493.01.T01:CDS 30.0%
! TCCCATGAGTTTTCTTTTTT+AGG + Chr3:39337813-39337832 MsG0380013493.01.T01:intron 30.0%
!! AAAAAAGCATATTTTGCTCG+AGG + Chr3:39336791-39336810 MsG0380013493.01.T01:intron 30.0%
!! ATAAAAAGGCTTGTTGATGT+TGG + Chr3:39340133-39340152 MsG0380013493.01.T01:intron 30.0%
!! CATATTCAATTTTTAAGGGG+AGG - Chr3:39339696-39339715 None:intergenic 30.0%
!! TATTGAAGGTCATTTTAGGT+GGG + Chr3:39337341-39337360 MsG0380013493.01.T01:intron 30.0%
!!! AACACCCTCACTTTTTTTAA+GGG - Chr3:39339551-39339570 None:intergenic 30.0%
!!! GGGAGAGCAATTTTTTAATT+GGG + Chr3:39337361-39337380 MsG0380013493.01.T01:intron 30.0%
!!! TAACACCCTCACTTTTTTTA+AGG - Chr3:39339552-39339571 None:intergenic 30.0%
!!! TGGGAGAGCAATTTTTTAAT+TGG + Chr3:39337360-39337379 MsG0380013493.01.T01:intron 30.0%
!!! TTTTTTGCTCCTAATTCTGA+TGG + Chr3:39335759-39335778 MsG0380013493.01.T01:CDS 30.0%
AAAAAGAAAAACGCGTTGGA+AGG - Chr3:39337892-39337911 None:intergenic 35.0%
AAGAATACAATTCGAGAAGG+GGG + Chr3:39339965-39339984 MsG0380013493.01.T01:CDS 35.0%
AATTACACCAACCTTCCTTA+AGG + Chr3:39338587-39338606 MsG0380013493.01.T01:intron 35.0%
AGAAAGTTGAGCATCTTTAC+CGG - Chr3:39335568-39335587 None:intergenic 35.0%
ATAGTATGACTCCTATTGCT+AGG + Chr3:39335736-39335755 MsG0380013493.01.T01:CDS 35.0%
ATCTTGATACAAAGCCAACA+AGG - Chr3:39335799-39335818 None:intergenic 35.0%
CCTTCCCTTAAAAAAAGTGA+GGG + Chr3:39339544-39339563 MsG0380013493.01.T01:intron 35.0%
CTGTGTTTGATTCTATTTGG+TGG + Chr3:39338977-39338996 MsG0380013493.01.T01:intron 35.0%
GACGTGTCAAAAATGAAGAA+AGG - Chr3:39335959-39335978 None:intergenic 35.0%
GAGATTGAAAAGGTCTCTAT+TGG - Chr3:39339872-39339891 None:intergenic 35.0%
GATATGAACCACCTTTCAAT+TGG + Chr3:39339738-39339757 MsG0380013493.01.T01:intron 35.0%
GGTAGTCATTAAGTTTCATG+AGG - Chr3:39335920-39335939 None:intergenic 35.0%
GGTGTCAAATGATTAGATGT+TGG + Chr3:39340354-39340373 MsG0380013493.01.T01:intron 35.0%
GTAAACACTTTAACACACCA+TGG - Chr3:39335674-39335693 None:intergenic 35.0%
GTCGATACTTAACAAAACAG+AGG + Chr3:39338033-39338052 MsG0380013493.01.T01:intron 35.0%
TCATGGCTGTATTGAAAACT+TGG - Chr3:39340056-39340075 None:intergenic 35.0%
TCCTTCCCTTAAAAAAAGTG+AGG + Chr3:39339543-39339562 MsG0380013493.01.T01:intron 35.0%
TCTTGATACAAAGCCAACAA+GGG - Chr3:39335798-39335817 None:intergenic 35.0%
TGCTAATCGACTGAAACTTT+AGG + Chr3:39340377-39340396 MsG0380013493.01.T01:intron 35.0%
TTCAAACACCCTCATATACA+TGG + Chr3:39340189-39340208 MsG0380013493.01.T01:intron 35.0%
TTGAAAAGGTCTCTATTGGA+AGG - Chr3:39339868-39339887 None:intergenic 35.0%
TTTGATGTGTTGCAAAAAGC+CGG + Chr3:39335546-39335565 MsG0380013493.01.T01:intron 35.0%
! AAGAATGCGATCCAACATTT+TGG - Chr3:39335637-39335656 None:intergenic 35.0%
! AGAATGCGATCCAACATTTT+GGG - Chr3:39335636-39335655 None:intergenic 35.0%
! GTGCTTGTTGACTAATGAAA+AGG - Chr3:39338895-39338914 None:intergenic 35.0%
! GTGTATTTTATTCGAGGAGA+GGG + Chr3:39336683-39336702 MsG0380013493.01.T01:intron 35.0%
! TGTGTATTTTATTCGAGGAG+AGG + Chr3:39336682-39336701 MsG0380013493.01.T01:intron 35.0%
!! GTATTGAAGGTCATTTTAGG+TGG + Chr3:39337340-39337359 MsG0380013493.01.T01:intron 35.0%
!! GTTGGCTTTGTATCAAGATA+AGG + Chr3:39335800-39335819 MsG0380013493.01.T01:CDS 35.0%
!!! TGGGTATTGAAGGTCATTTT+AGG + Chr3:39337337-39337356 MsG0380013493.01.T01:intron 35.0%
AAGAAGACCTTAAGGAAGGT+TGG - Chr3:39338597-39338616 None:intergenic 40.0%
AAGATCATACCAGGATACGA+AGG - Chr3:39340252-39340271 None:intergenic 40.0%
AAGGTTCTTGAGAGCTACAA+TGG + Chr3:39340100-39340119 MsG0380013493.01.T01:intron 40.0%
ACTGGCTGTTGAGATTGAAA+AGG - Chr3:39339882-39339901 None:intergenic 40.0%
AGATCATACCAGGATACGAA+GGG - Chr3:39340251-39340270 None:intergenic 40.0%
CAGCTCTATTGTTCTTCCAA+TGG + Chr3:39335493-39335512 MsG0380013493.01.T01:intron 40.0%
CGCTCCTAAGATGAATGATA+AGG + Chr3:39337289-39337308 MsG0380013493.01.T01:intron 40.0%
CGCTCCTTATCATTCATCTT+AGG - Chr3:39337296-39337315 None:intergenic 40.0%
GACTTAGGTGTGAATGGAAA+TGG + Chr3:39335404-39335423 MsG0380013493.01.T01:CDS 40.0%
GGAGCAAAAAACCTAGCAAT+AGG - Chr3:39335750-39335769 None:intergenic 40.0%
GTGATAGACTTAGGTGTGAA+TGG + Chr3:39335398-39335417 MsG0380013493.01.T01:CDS 40.0%
TAGGAGAGAAAAATAGGGGA+TGG - Chr3:39336017-39336036 None:intergenic 40.0%
TCATTCATCTTAGGAGCGAA+CGG - Chr3:39337287-39337306 None:intergenic 40.0%
TGAGAGCTACAATGGTTTCA+AGG + Chr3:39340108-39340127 MsG0380013493.01.T01:intron 40.0%
TGCCATGAACCATGTTGAAT+GGG - Chr3:39339994-39340013 None:intergenic 40.0%
TGCGTTTGATTATGCAAGCT+TGG + Chr3:39340018-39340037 MsG0380013493.01.T01:CDS 40.0%
TGGTTCCTAGACCAATTGAA+AGG - Chr3:39339752-39339771 None:intergenic 40.0%
TGTTTCATTAGGACCCTTGT+TGG + Chr3:39335782-39335801 MsG0380013493.01.T01:CDS 40.0%
TTAAGGGAAGGAAGAGAGAA+GGG - Chr3:39339535-39339554 None:intergenic 40.0%
TTCCTAGACCAATTGAAAGG+TGG - Chr3:39339749-39339768 None:intergenic 40.0%
TTTAAGGGAAGGAAGAGAGA+AGG - Chr3:39339536-39339555 None:intergenic 40.0%
TTTGGATGCTCCCAAAATGT+TGG + Chr3:39335623-39335642 MsG0380013493.01.T01:CDS 40.0%
! AAAGCATATTTTGCTCGAGG+AGG + Chr3:39336794-39336813 MsG0380013493.01.T01:intron 40.0%
! AACCACCTTTCAATTGGTCT+AGG + Chr3:39339744-39339763 MsG0380013493.01.T01:intron 40.0%
! AGAAATGGGAAGGATTTTGG+TGG - Chr3:39338927-39338946 None:intergenic 40.0%
! ATAAGGTTTTCTTGGCTAGC+TGG + Chr3:39335817-39335836 MsG0380013493.01.T01:CDS 40.0%
!! AAAAGGCTTGTTGATGTTGG+AGG + Chr3:39340136-39340155 MsG0380013493.01.T01:intron 40.0%
!!! CCCTCACTTTTTTTAAGGGA+AGG - Chr3:39339547-39339566 None:intergenic 40.0%
AAGGAAGAGAGAAGGGAGAA+TGG - Chr3:39339528-39339547 None:intergenic 45.0%
ACCAAGTCAGTGTTGCAGAA+TGG - Chr3:39335523-39335542 None:intergenic 45.0%
ATGACCTTCAATACCCAGAG+CGG - Chr3:39337334-39337353 None:intergenic 45.0%
CACTCACTGTTCCACTATCA+AGG + Chr3:39338816-39338835 MsG0380013493.01.T01:intron 45.0%
GATCATACCAGGATACGAAG+GGG - Chr3:39340250-39340269 None:intergenic 45.0%
GGGCCCCTTATATGCATTAA+CGG + Chr3:39339336-39339355 MsG0380013493.01.T01:intron 45.0%
GTCCCATTCAACATGGTTCA+TGG + Chr3:39339989-39340008 MsG0380013493.01.T01:CDS 45.0%
GTGCCATGAACCATGTTGAA+TGG - Chr3:39339995-39340014 None:intergenic 45.0%
GTGTGAATGGAAATGGAGAG+AGG + Chr3:39335411-39335430 MsG0380013493.01.T01:CDS 45.0%
TCACTGTTCCACTATCAAGG+TGG + Chr3:39338819-39338838 MsG0380013493.01.T01:intron 45.0%
TTGATGTTGGAGGTGGTCTT+GGG + Chr3:39340146-39340165 MsG0380013493.01.T01:intron 45.0%
TTGGTAGGAGTTGAACACGT+TGG + Chr3:39340450-39340469 MsG0380013493.01.T01:intron 45.0%
! CATATTTTGCTCGAGGAGGA+GGG + Chr3:39336798-39336817 MsG0380013493.01.T01:intron 45.0%
! TCCATTCTGCAACACTGACT+TGG + Chr3:39335519-39335538 MsG0380013493.01.T01:intron 45.0%
!! ATGGGAAGGATTTTGGTGGA+TGG - Chr3:39338923-39338942 None:intergenic 45.0%
!! GTTGATGACATGAGGCAAGT+CGG - Chr3:39340224-39340243 None:intergenic 45.0%
!!! AAAAAATAATTTAATTTGTT+TGG - Chr3:39337580-39337599 None:intergenic 5.0%
!!! TTTGTTTTAATTTATTTTTT+AGG - Chr3:39336036-39336055 None:intergenic 5.0%
ACGAAAGTTAACTGCCGCTC+TGG + Chr3:39337317-39337336 MsG0380013493.01.T01:intron 50.0%
CGAAAGTTAACTGCCGCTCT+GGG + Chr3:39337318-39337337 MsG0380013493.01.T01:intron 50.0%
CTTGCTCTTCTTGCATCCCA+TGG + Chr3:39335654-39335673 MsG0380013493.01.T01:CDS 50.0%
GTAGGAGTTGAACACGTTGG+CGG + Chr3:39340453-39340472 MsG0380013493.01.T01:intron 50.0%
GTTGATGTTGGAGGTGGTCT+TGG + Chr3:39340145-39340164 MsG0380013493.01.T01:intron 50.0%
! GCATATTTTGCTCGAGGAGG+AGG + Chr3:39336797-39336816 MsG0380013493.01.T01:intron 50.0%
! GTTGCAGAATGGAGTGCCAT+TGG - Chr3:39335512-39335531 None:intergenic 50.0%
!! AGGCTTGTTGATGTTGGAGG+TGG + Chr3:39340139-39340158 MsG0380013493.01.T01:intron 50.0%
!! AGGGGCATGTTGATGACATG+AGG - Chr3:39340232-39340251 None:intergenic 50.0%
AGGTTTGGCGTCCATCGAAG+CGG - Chr3:39339305-39339324 None:intergenic 55.0%
CAACATGCCCCTTCGTATCC+TGG + Chr3:39340240-39340259 MsG0380013493.01.T01:intron 55.0%
TGATGCTAACCCCGCTTCGA+TGG + Chr3:39339291-39339310 MsG0380013493.01.T01:intron 55.0%
!! ACTGCCGCTCTGGGTATTGA+AGG + Chr3:39337327-39337346 MsG0380013493.01.T01:intron 55.0%
!! AGGGGGTGTCCCATTCAACA+TGG + Chr3:39339982-39340001 MsG0380013493.01.T01:CDS 55.0%
GGTTTGGCGTCCATCGAAGC+GGG - Chr3:39339304-39339323 None:intergenic 60.0%
GTTTGGCGTCCATCGAAGCG+GGG - Chr3:39339303-39339322 None:intergenic 60.0%
CGCCAAACCTGTGCGCAGCA+CGG + Chr3:39339315-39339334 MsG0380013493.01.T01:intron 65.0%
GCCAAACCTGTGCGCAGCAC+GGG + Chr3:39339316-39339335 MsG0380013493.01.T01:intron 65.0%
GCCCGTGCTGCGCACAGGTT+TGG - Chr3:39339320-39339339 None:intergenic 70.0%
AAGGGGCCCGTGCTGCGCAC+AGG - Chr3:39339325-39339344 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 39335380 39340702 39335380 ID=MsG0380013493.01;Name=MsG0380013493.01
Chr3 mRNA 39335380 39340702 39335380 ID=MsG0380013493.01.T01;Parent=MsG0380013493.01;Name=MsG0380013493.01.T01;_AED=0.17;_eAED=0.17;_QI=0|0.33|0.25|1|0|0|4|184|171
Chr3 exon 39335380 39335467 39335380 ID=MsG0380013493.01.T01:exon:22263;Parent=MsG0380013493.01.T01
Chr3 exon 39335565 39335838 39335565 ID=MsG0380013493.01.T01:exon:22264;Parent=MsG0380013493.01.T01
Chr3 exon 39339955 39340046 39339955 ID=MsG0380013493.01.T01:exon:22265;Parent=MsG0380013493.01.T01
Chr3 exon 39340457 39340702 39340457 ID=MsG0380013493.01.T01:exon:22266;Parent=MsG0380013493.01.T01
Chr3 CDS 39335380 39335467 39335380 ID=MsG0380013493.01.T01:cds;Parent=MsG0380013493.01.T01
Chr3 CDS 39335565 39335838 39335565 ID=MsG0380013493.01.T01:cds;Parent=MsG0380013493.01.T01
Chr3 CDS 39339955 39340046 39339955 ID=MsG0380013493.01.T01:cds;Parent=MsG0380013493.01.T01
Chr3 CDS 39340457 39340518 39340457 ID=MsG0380013493.01.T01:cds;Parent=MsG0380013493.01.T01
Chr3 three_prime_UTR 39340519 39340702 39340519 ID=MsG0380013493.01.T01:three_prime_utr;Parent=MsG0380013493.01.T01
Gene Sequence

>MsG0380013493.01.T01

ATGGCAAACCATTCAAATGTGATAGACTTAGGTGTGAATGGAAATGGAGAGAGGAGATCAGAAGAACAAGAATTAGAAGATGAAGAAACCGGTAAAGATGCTCAACTTTCTGCTGAAGAGATTGCATCTCGTATTTCTTGCAACAATTTGGATGCTCCCAAAATGTTGGATCGCATTCTTGCTCTTCTTGCATCCCATGGTGTGTTAAAGTGTTTACTCATTCAAGATGAACAAAAGCTTGGATCCTTTCATAGACTTTATAGTATGACTCCTATTGCTAGGTTTTTTGCTCCTAATTCTGATGGTGTTTCATTAGGACCCTTGTTGGCTTTGTATCAAGATAAGGTTTTCTTGGCTAGCTGGTCCGAGCTTAAGAATACAATTCGAGAAGGGGGTGTCCCATTCAACATGGTTCATGGCACACATGCGTTTGATTATGCAAGCTTGGACTCAAGAGTTGAACACGTTGGCGGAGATATGTTGAAAGTGTACCTAAAGGATGCAATCTCTTTATGA

Protein sequence

>MsG0380013493.01.T01

MANHSNVIDLGVNGNGERRSEEQELEDEETGKDAQLSAEEIASRISCNNLDAPKMLDRILALLASHGVLKCLLIQDEQKLGSFHRLYSMTPIARFFAPNSDGVSLGPLLALYQDKVFLASWSELKNTIREGGVPFNMVHGTHAFDYASLDSRVEHVGGDMLKVYLKDAISL*