AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580027254.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027254.01.T01 MTR_5g053450 80.348 575 15 4 1 477 1 575 0.0 893
MsG0580027254.01.T01 MTR_7g073530 32.041 387 140 10 104 367 86 472 3.49e-46 167
MsG0580027254.01.T01 MTR_8g005720 35.115 393 140 12 105 383 92 483 3.12e-43 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580027254.01.T01 AT1G68830 66.019 515 79 3 59 477 48 562 0.0 665
MsG0580027254.01.T01 AT5G01920 43.195 169 58 3 251 381 323 491 2.60e-28 117
MsG0580027254.01.T01 AT5G01920 35.838 173 77 4 112 250 96 268 5.50e-20 93.2
MsG0580027254.01.T01 AT5G01920 43.195 169 58 3 251 381 323 491 2.60e-28 117
MsG0580027254.01.T01 AT5G01920 35.838 173 77 4 112 250 96 268 5.50e-20 93.2

Find 105 sgRNAs with CRISPR-Local

Find 314 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCCATACTCTCGTTTA+AGG 0.134787 5:+57011130 None:intergenic
TTGGTGCTTTGTCTTATCTT+TGG 0.201448 5:-57015241 MsG0580027254.01.T01:CDS
CCTGGTGTTGTTCTTGCTTT+TGG 0.208005 5:-57015260 MsG0580027254.01.T01:CDS
AAGTCTTTGGCCAATGAAAA+TGG 0.216825 5:+57015493 None:intergenic
CTCCTGAATATTGGCTTATA+TGG 0.251366 5:-57013609 MsG0580027254.01.T01:CDS
CCATATCATGAAGTTGGTTT+TGG 0.263305 5:+57015579 None:intergenic
TACCTTTGAAGAGGGCTTCT+TGG 0.263410 5:+57014255 None:intergenic
TGGTGCTTTGTCTTATCTTT+GGG 0.266282 5:-57015240 MsG0580027254.01.T01:CDS
CGAGCAACACAACAGGATTA+TGG 0.267381 5:-57011754 MsG0580027254.01.T01:CDS
AGGGTTTGATTCTAAGTCTT+TGG 0.275538 5:+57015480 None:intergenic
GCCTTTGCCTTGCTTTATAT+CGG 0.279262 5:+57011869 None:intergenic
TTGTGCACCAGCCTTCTTCT+TGG 0.291467 5:+57011202 None:intergenic
AATATGGTGCTGTAGAAATT+TGG 0.292645 5:-57013837 MsG0580027254.01.T01:CDS
CTTTGTGACTCCAATTCCTT+TGG 0.309079 5:+57015544 None:intergenic
TTGAAGAAGGCGACTGAATA+TGG 0.312551 5:-57013853 MsG0580027254.01.T01:CDS
TACAACTTTCATTCCTCTCT+TGG 0.323203 5:+57011065 None:intergenic
AAGAGACTACCAACATTATA+TGG 0.329901 5:+57013535 None:intergenic
CATTCCTAAAGAGTTTCTTT+TGG 0.331479 5:-57012826 MsG0580027254.01.T01:CDS
GGATCCAAAAGAAACTCTTT+AGG 0.332998 5:+57012822 None:intergenic
TGGTGGTGGTTCATTGTTTG+AGG 0.346610 5:+57015460 None:intergenic
TGTGCACCAGCCTTCTTCTT+GGG 0.348907 5:+57011203 None:intergenic
CAAGTGGATTATTCAGCTTA+TGG 0.349059 5:-57011722 MsG0580027254.01.T01:CDS
CCAAAACCAACTTCATGATA+TGG 0.361676 5:-57015579 MsG0580027254.01.T01:exon
CAAAGAAGACTCCTGAATAT+TGG 0.362523 5:-57013618 MsG0580027254.01.T01:CDS
CTGCACTCTCTCCAGTCTTA+TGG 0.363671 5:-57012574 MsG0580027254.01.T01:CDS
CGCCATATAAGCCAATATTC+AGG 0.377337 5:+57013607 None:intergenic
CTTGAGCTGTTGGATTTAGA+TGG 0.378283 5:-57011925 MsG0580027254.01.T01:CDS
ATTCAGCTTATGGCAAAATC+AGG 0.382255 5:-57011712 MsG0580027254.01.T01:CDS
ACATTCAAAATAATTGATCT+TGG 0.382791 5:-57012882 MsG0580027254.01.T01:CDS
TTGGATTTAGATGGCGGAAT+AGG 0.392942 5:-57011916 MsG0580027254.01.T01:CDS
CAACACCAACACCTACAAAA+AGG 0.400926 5:+57015366 None:intergenic
ACTGTTGCAACCAAAGGAAT+TGG 0.403712 5:-57015554 MsG0580027254.01.T01:CDS
AAGCCTTCTTTGTCAAAGTA+AGG 0.405199 5:+57011820 None:intergenic
CTTTGACAAAGAAGGCTTGT+TGG 0.405734 5:-57011815 MsG0580027254.01.T01:CDS
GCTACACCTGGTGTTGCTCC+TGG 0.415742 5:-57015218 MsG0580027254.01.T01:CDS
GGCTTATATGGCGGTTTGAA+GGG 0.418782 5:-57013597 MsG0580027254.01.T01:CDS
CATCCTTACTTTGACAAAGA+AGG 0.421240 5:-57011823 MsG0580027254.01.T01:CDS
GTTGCACGTCAAAATATTAC+AGG 0.421582 5:+57010875 None:intergenic
GGTGGTGGTTCATTGTTTGA+GGG 0.422407 5:+57015461 None:intergenic
ACAACTTTCATTCCTCTCTT+GGG 0.423424 5:+57011066 None:intergenic
GGAGAGAGTGCAGTTGCAAC+TGG 0.425506 5:+57012584 None:intergenic
TCTTATCTTTGGGCTACACC+TGG 0.433977 5:-57015230 MsG0580027254.01.T01:CDS
ATCACCACAAAAGCCATTCA+TGG 0.434279 5:-57015419 MsG0580027254.01.T01:CDS
TGGCTTATATGGCGGTTTGA+AGG 0.434408 5:-57013598 MsG0580027254.01.T01:CDS
TTAGGAGAGGCTTGAGCTGT+TGG 0.440348 5:-57011935 MsG0580027254.01.T01:intron
GGCTTGAATGTTACTGTCCC+TGG 0.447608 5:-57015278 MsG0580027254.01.T01:CDS
ATTTAGATGGCGGAATAGGA+TGG 0.466045 5:-57011912 MsG0580027254.01.T01:CDS
GGCAAAATCAGGAACAGAAA+AGG 0.483650 5:-57011701 MsG0580027254.01.T01:CDS
AAAGCATTTGGTGGAGGAGA+TGG 0.488211 5:-57011091 MsG0580027254.01.T01:CDS
TAACAAACCTTTCTGAAAGT+AGG 0.489012 5:+57015149 None:intergenic
CTTGCACTGCATGGTGGTGG+TGG 0.491350 5:+57015446 None:intergenic
AATCCATTCAGCACCATGAA+TGG 0.498174 5:+57015406 None:intergenic
AGTAATAATACCTTTGAAGA+GGG 0.504386 5:+57014247 None:intergenic
GGAAATTGTGCCCAAGAAGA+AGG 0.504841 5:-57011213 MsG0580027254.01.T01:CDS
CCAAAAGCAAGAACAACACC+AGG 0.508205 5:+57015260 None:intergenic
AAGCCATTCATGGTGCTGAA+TGG 0.509311 5:-57015409 MsG0580027254.01.T01:CDS
TGGTCTAATATTCCTCCAAA+TGG 0.512216 5:-57012411 MsG0580027254.01.T01:intron
AATTCCTTTGGTTGCAACAG+TGG 0.512321 5:+57015556 None:intergenic
GTTTAGACCTACTTTCAGAA+AGG 0.516126 5:-57015156 MsG0580027254.01.T01:intron
AGTTTAACCTGCCATAAGAC+TGG 0.523445 5:+57012563 None:intergenic
GTGCTCATAATGTACTGCTC+TGG 0.529003 5:+57012632 None:intergenic
ACATTCAAGCCACTAGACTT+AGG 0.534526 5:+57015290 None:intergenic
CTGAATATTGGCTTATATGG+CGG 0.536964 5:-57013606 MsG0580027254.01.T01:CDS
CTGTAGATATCAAATCTGTC+AGG 0.543319 5:+57012437 None:intergenic
AATCTTGCACTGCATGGTGG+TGG 0.543569 5:+57015443 None:intergenic
CAGTGGCCATATCATGAAGT+TGG 0.544516 5:+57015573 None:intergenic
GCTTATATGGCGGTTTGAAG+GGG 0.553342 5:-57013596 MsG0580027254.01.T01:CDS
CTTCAGCTCTTAAAGTGCAA+AGG 0.564633 5:-57011166 MsG0580027254.01.T01:CDS
ATTCACTGAAGCTCAACTAC+AGG 0.570689 5:-57011671 MsG0580027254.01.T01:CDS
ACTCTCTCCAGTCTTATGGC+AGG 0.570820 5:-57012570 MsG0580027254.01.T01:intron
CCACACTCCATCACAGTGCA+TGG 0.571570 5:+57015338 None:intergenic
CTGCAATAGATCAGCTAAGG+TGG 0.572573 5:+57013570 None:intergenic
AGCCAAGAAGCCCTCTTCAA+AGG 0.573453 5:-57014257 MsG0580027254.01.T01:intron
AGATTGATATGAGTTTGAAG+AGG 0.573556 5:-57015630 None:intergenic
ATCCTTCCATTTCAGATATG+CGG 0.573898 5:-57012657 MsG0580027254.01.T01:intron
ATTTGATACTCACCATTTGG+AGG 0.574767 5:+57012399 None:intergenic
ACTGGAGCTGAGGGTGCAGA+TGG 0.578510 5:+57012602 None:intergenic
AGATTTGATATCTACAGTAC+TGG 0.579644 5:-57012431 MsG0580027254.01.T01:CDS
ATTGTGCCCAAGAAGAAGGC+TGG 0.580227 5:-57011209 MsG0580027254.01.T01:CDS
TTTAGATGGCGGAATAGGAT+GGG 0.582248 5:-57011911 MsG0580027254.01.T01:CDS
AAAACAGGAAAAGCATTTGG+TGG 0.582619 5:-57011100 MsG0580027254.01.T01:CDS
GAGCTGTTGGATTTAGATGG+CGG 0.583483 5:-57011922 MsG0580027254.01.T01:CDS
ACAGGAAAAGCATTTGGTGG+AGG 0.584401 5:-57011097 MsG0580027254.01.T01:CDS
GTGATGAATCTTGCACTGCA+TGG 0.588583 5:+57015437 None:intergenic
ATGGCCACTGTTGCAACCAA+AGG 0.589790 5:-57015560 MsG0580027254.01.T01:CDS
TGCAGTTGCAACTGGAGCTG+AGG 0.594722 5:+57012592 None:intergenic
AGGTGACTTAGTCTTGAAGA+AGG 0.596316 5:-57013866 MsG0580027254.01.T01:CDS
CATAAGCTGAATAATCCACT+TGG 0.599152 5:+57011723 None:intergenic
ACTCTGCAATAGATCAGCTA+AGG 0.600527 5:+57013567 None:intergenic
CAGTAATAATACCTTTGAAG+AGG 0.602945 5:+57014246 None:intergenic
AGCACTCTTCCTAAGTCTAG+TGG 0.608042 5:-57015299 MsG0580027254.01.T01:CDS
TGGACTTCCATGCACTGTGA+TGG 0.608649 5:-57015345 MsG0580027254.01.T01:CDS
AAAATCAGGAACAGAAAAGG+AGG 0.609977 5:-57011698 MsG0580027254.01.T01:CDS
GCTGCTACAGACTTGCGAGT+TGG 0.612827 5:-57012858 MsG0580027254.01.T01:CDS
CCATGCACTGTGATGGAGTG+TGG 0.621185 5:-57015338 MsG0580027254.01.T01:CDS
CAATGGTCCGATATAAAGCA+AGG 0.622058 5:-57011876 MsG0580027254.01.T01:CDS
TCCGATATAAAGCAAGGCAA+AGG 0.623569 5:-57011870 MsG0580027254.01.T01:CDS
TATCTATCATGCAAAATCTG+AGG 0.626573 5:-57011789 MsG0580027254.01.T01:CDS
GCAGTTGCAACTGGAGCTGA+GGG 0.634177 5:+57012593 None:intergenic
TCAGGAACAGAAAAGGAGGG+TGG 0.634221 5:-57011694 MsG0580027254.01.T01:CDS
CAAAAGCAAGAACAACACCA+GGG 0.646990 5:+57015261 None:intergenic
GAGGAGATGGATCCCAAGAG+AGG 0.662184 5:-57011078 MsG0580027254.01.T01:CDS
ATGAATCTTGCACTGCATGG+TGG 0.677136 5:+57015440 None:intergenic
AAATCAGGAACAGAAAAGGA+GGG 0.696429 5:-57011697 MsG0580027254.01.T01:CDS
ATTATGGAGAAGCTGCCAAG+TGG 0.696799 5:-57011738 MsG0580027254.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATTGAAAAGAAAAA+GGG + Chr5:57015431-57015450 None:intergenic 10.0%
!! ATGATATATATTCTATTTAT+AGG - Chr5:57012326-57012345 MsG0580027254.01.T01:intron 10.0%
!!! AAATAAACAAAATTTGATTT+TGG + Chr5:57015062-57015081 None:intergenic 10.0%
!!! ATTTTAATGAAATAGTATTT+CGG - Chr5:57012068-57012087 MsG0580027254.01.T01:intron 10.0%
!!! TGTTTTATATGAAATTAAAA+AGG - Chr5:57015499-57015518 MsG0580027254.01.T01:CDS 10.0%
!!! TTAATTTTTTTTATTAACCA+TGG - Chr5:57013539-57013558 MsG0580027254.01.T01:intron 10.0%
!! AAAAAAATTAAAGCATAACT+TGG + Chr5:57013530-57013549 None:intergenic 15.0%
!! AAAAAAGAATGATCAATAAA+AGG + Chr5:57015216-57015235 None:intergenic 15.0%
!! AAAATATTGAAAAGAAAAAG+GGG + Chr5:57015430-57015449 None:intergenic 15.0%
!! AAATTTAAATAGAACTTTCT+CGG + Chr5:57013212-57013231 None:intergenic 15.0%
!! ATAATTTAGGTAATAAATTG+AGG + Chr5:57011365-57011384 None:intergenic 15.0%
!! CAAAAATATTGAAAAGAAAA+AGG + Chr5:57015432-57015451 None:intergenic 15.0%
!! TCTGATACTATATTAAAATT+TGG - Chr5:57011910-57011929 MsG0580027254.01.T01:CDS 15.0%
!! TGATTAATAGATACATTATT+AGG - Chr5:57013721-57013740 MsG0580027254.01.T01:intron 15.0%
!!! ATAAGTTTTAGTAGAATTAA+AGG + Chr5:57013072-57013091 None:intergenic 15.0%
!!! CAATTTTGATCATTTTATAT+AGG - Chr5:57014382-57014401 MsG0580027254.01.T01:intron 15.0%
!!! TCAAATTTTGTTTATTTTAC+TGG - Chr5:57015065-57015084 MsG0580027254.01.T01:intron 15.0%
!!! TTATTTTTACTAGCTTATAT+AGG + Chr5:57011714-57011733 None:intergenic 15.0%
!!! TTTTAATGAAATAGTATTTC+GGG - Chr5:57012069-57012088 MsG0580027254.01.T01:intron 15.0%
!!! TTTTGTAGTTAAAATGATTA+TGG - Chr5:57014214-57014233 MsG0580027254.01.T01:intron 15.0%
!! AATTGTTTAGTTATGACTTA+TGG - Chr5:57012544-57012563 MsG0580027254.01.T01:intron 20.0%
!! ACATTCAAAATAATTGATCT+TGG - Chr5:57013576-57013595 MsG0580027254.01.T01:CDS 20.0%
!! CCAAAAACATTAAATAGTTT+AGG + Chr5:57012354-57012373 None:intergenic 20.0%
!! CTAACTTTACATTACAAAAT+CGG - Chr5:57011940-57011959 MsG0580027254.01.T01:intron 20.0%
!! GAGAATCTATCAAAAATTAA+TGG + Chr5:57012437-57012456 None:intergenic 20.0%
!! TAAATAGTAAACCTTCAATT+TGG + Chr5:57012033-57012052 None:intergenic 20.0%
!! TATTATTACTGTTATGGATA+TGG - Chr5:57012224-57012243 MsG0580027254.01.T01:intron 20.0%
!!! AACAAAAAATCCATTTTCAT+TGG - Chr5:57010955-57010974 MsG0580027254.01.T01:three_prime_UTR 20.0%
!!! AATGAAAATGGATTTTTTGT+TGG + Chr5:57010956-57010975 None:intergenic 20.0%
!!! ATTTAAATTTTATGCTTCCT+TGG - Chr5:57013222-57013241 MsG0580027254.01.T01:intron 20.0%
!!! ATTTTTGATAGATTCTCTTA+AGG - Chr5:57012440-57012459 MsG0580027254.01.T01:CDS 20.0%
!!! CCTAAACTATTTAATGTTTT+TGG - Chr5:57012351-57012370 MsG0580027254.01.T01:intron 20.0%
!!! GTTTCATATATTTCTAATCA+TGG - Chr5:57014289-57014308 MsG0580027254.01.T01:CDS 20.0%
! AAATCATTTAAACAATGGCA+AGG - Chr5:57014312-57014331 MsG0580027254.01.T01:CDS 25.0%
! AACTTTCACTATCTACTATT+TGG + Chr5:57012004-57012023 None:intergenic 25.0%
! AATACTATAGAGATGATTCA+GGG - Chr5:57011977-57011996 MsG0580027254.01.T01:intron 25.0%
! ACAAACATATCAAAAAAACC+AGG + Chr5:57011261-57011280 None:intergenic 25.0%
! ACCTAAATTATTACAATCTC+CGG - Chr5:57011374-57011393 MsG0580027254.01.T01:intron 25.0%
! ACTCGATAAATTGAAAATGT+CGG - Chr5:57012962-57012981 MsG0580027254.01.T01:intron 25.0%
! ATAGTAGATAGTGAAAGTTT+AGG - Chr5:57012005-57012024 MsG0580027254.01.T01:intron 25.0%
! ATTATTTGATACTCACCATT+TGG + Chr5:57014065-57014084 None:intergenic 25.0%
! CAAAGGGTTAAATATGTTTA+TGG + Chr5:57015092-57015111 None:intergenic 25.0%
! CATGGAAATCATTTAAACAA+TGG - Chr5:57014307-57014326 MsG0580027254.01.T01:CDS 25.0%
! GCTAGTAAAAATAAGCTATA+AGG - Chr5:57011720-57011739 MsG0580027254.01.T01:CDS 25.0%
! TACCAGTTTGATCATATAAT+TGG + Chr5:57014348-57014367 None:intergenic 25.0%
! TAGTAGATAGTGAAAGTTTA+GGG - Chr5:57012006-57012025 MsG0580027254.01.T01:intron 25.0%
! TCAAAAATGTTACATAAACG+TGG + Chr5:57015608-57015627 None:intergenic 25.0%
! TCAACTATGAAGGAAAAAAA+GGG + Chr5:57015191-57015210 None:intergenic 25.0%
! TGGTTATTTATGATCTCTAA+AGG - Chr5:57013242-57013261 MsG0580027254.01.T01:intron 25.0%
! TTAGAGATCATAAATAACCA+AGG + Chr5:57013242-57013261 None:intergenic 25.0%
!! ACATGTGCTATTATTAATGA+TGG + Chr5:57013936-57013955 None:intergenic 25.0%
!! AGAGATTTTCCATATAATGT+TGG - Chr5:57012914-57012933 MsG0580027254.01.T01:intron 25.0%
!! AGTAATAATACCTTTGAAGA+GGG + Chr5:57012214-57012233 None:intergenic 25.0%
!! CGATTTTGTAATGTAAAGTT+AGG + Chr5:57011942-57011961 None:intergenic 25.0%
!! CGTTTATGTAACATTTTTGA+AGG - Chr5:57015608-57015627 MsG0580027254.01.T01:five_prime_UTR 25.0%
!! TTATGACTTATGGTACTTTT+TGG - Chr5:57012554-57012573 MsG0580027254.01.T01:intron 25.0%
!! TTTTCATTTACTATTTGCAG+AGG - Chr5:57012813-57012832 MsG0580027254.01.T01:intron 25.0%
!!! CAAAGGTATTATTACTGTTA+TGG - Chr5:57012218-57012237 MsG0580027254.01.T01:intron 25.0%
!!! TTACCATTTTAGTTTGCTTA+CGG - Chr5:57012778-57012797 MsG0580027254.01.T01:intron 25.0%
!!! TTTTGTTTATGGTTTTCTTG+AGG - Chr5:57012688-57012707 MsG0580027254.01.T01:intron 25.0%
!!! TTTTTCAATTAAGGCTACAA+GGG - Chr5:57011632-57011651 MsG0580027254.01.T01:intron 25.0%
!!! TTTTTTCAATTAAGGCTACA+AGG - Chr5:57011631-57011650 MsG0580027254.01.T01:intron 25.0%
AAAAACCTTAAACGAGAGTA+TGG - Chr5:57015323-57015342 MsG0580027254.01.T01:CDS 30.0%
AAAATGAAGAACCAACTTGT+GGG - Chr5:57012476-57012495 MsG0580027254.01.T01:intron 30.0%
AAATTCATCTGAAGATACCT+TGG + Chr5:57013660-57013679 None:intergenic 30.0%
AACCTCTTGTGTAAAAAACA+GGG + Chr5:57014930-57014949 None:intergenic 30.0%
AAGAGACTACCAACATTATA+TGG + Chr5:57012926-57012945 None:intergenic 30.0%
AATTCAACCGTCAATTAAAG+AGG - Chr5:57014442-57014461 MsG0580027254.01.T01:intron 30.0%
AGATTTGATATCTACAGTAC+TGG - Chr5:57014027-57014046 MsG0580027254.01.T01:intron 30.0%
AGCCAATTATATGATCAAAC+TGG - Chr5:57014343-57014362 MsG0580027254.01.T01:intron 30.0%
GAACTAAAAAAAGACCTGTT+TGG + Chr5:57011766-57011785 None:intergenic 30.0%
GAATACTATAGAGATGATTC+AGG - Chr5:57011976-57011995 MsG0580027254.01.T01:intron 30.0%
GTATCTAAAGAAATGACATG+TGG + Chr5:57014873-57014892 None:intergenic 30.0%
GTCAACTATGAAGGAAAAAA+AGG + Chr5:57015192-57015211 None:intergenic 30.0%
GTGATTGAATTTGTAGTGTT+TGG - Chr5:57011539-57011558 MsG0580027254.01.T01:intron 30.0%
TAAAATGAAGAACCAACTTG+TGG - Chr5:57012475-57012494 MsG0580027254.01.T01:intron 30.0%
TAAGCGTGAAATAAGTGTTT+CGG + Chr5:57013167-57013186 None:intergenic 30.0%
TATCTATCATGCAAAATCTG+AGG - Chr5:57014669-57014688 MsG0580027254.01.T01:intron 30.0%
TCCGGAGATTGTAATAATTT+AGG + Chr5:57011378-57011397 None:intergenic 30.0%
TCTGAGAAAATAATGTTCTG+CGG + Chr5:57013452-57013471 None:intergenic 30.0%
TGTAGTGTTTGGTAAAATAG+TGG - Chr5:57011550-57011569 MsG0580027254.01.T01:intron 30.0%
TTAGTTCAATGAACCTAAGA+GGG - Chr5:57011779-57011798 MsG0580027254.01.T01:CDS 30.0%
TTGACGGTTGAATTGTATAA+AGG + Chr5:57014436-57014455 None:intergenic 30.0%
TTGCTGAGAATGGTTTATTA+TGG - Chr5:57012110-57012129 MsG0580027254.01.T01:intron 30.0%
! AAGACTGATAATTGATTCAC+TGG + Chr5:57013024-57013043 None:intergenic 30.0%
! AGTGTTTCGGAAAAAAGTTT+TGG + Chr5:57013154-57013173 None:intergenic 30.0%
! ATGTTTCGACCTGAAATTTT+TGG + Chr5:57013295-57013314 None:intergenic 30.0%
! CAGAACATTATTTTCTCAGA+AGG - Chr5:57013452-57013471 MsG0580027254.01.T01:intron 30.0%
! CAGTAATAATACCTTTGAAG+AGG + Chr5:57012215-57012234 None:intergenic 30.0%
! CATTCCTAAAGAGTTTCTTT+TGG - Chr5:57013632-57013651 MsG0580027254.01.T01:intron 30.0%
! GTGCTATTATTAATGATGGA+TGG + Chr5:57013932-57013951 None:intergenic 30.0%
! TAACAAACCTTTCTGAAAGT+AGG + Chr5:57011312-57011331 None:intergenic 30.0%
! TCATTTTATATAGGCATTCC+TGG - Chr5:57014391-57014410 MsG0580027254.01.T01:intron 30.0%
! TTCTTGAGGTAAGGATTTTT+GGG - Chr5:57012702-57012721 MsG0580027254.01.T01:intron 30.0%
! TTTAGTTCAATGAACCTAAG+AGG - Chr5:57011778-57011797 MsG0580027254.01.T01:CDS 30.0%
! TTTATGGTTTTCTTGAGGTA+AGG - Chr5:57012693-57012712 MsG0580027254.01.T01:intron 30.0%
! TTTCTTGAGGTAAGGATTTT+TGG - Chr5:57012701-57012720 MsG0580027254.01.T01:intron 30.0%
! TTTTATTAACCATGGTCTCA+GGG - Chr5:57013547-57013566 MsG0580027254.01.T01:CDS 30.0%
! TTTTCATCCCTCCAAAAATA+GGG + Chr5:57015016-57015035 None:intergenic 30.0%
! TTTTTATTAACCATGGTCTC+AGG - Chr5:57013546-57013565 MsG0580027254.01.T01:CDS 30.0%
! TTTTTCATCCCTCCAAAAAT+AGG + Chr5:57015017-57015036 None:intergenic 30.0%
!! AATATGGTGCTGTAGAAATT+TGG - Chr5:57012621-57012640 MsG0580027254.01.T01:CDS 30.0%
!! ATAAAAGGTGTCAACTATGA+AGG + Chr5:57015201-57015220 None:intergenic 30.0%
!! TCTTATAAGTTAGCTTGTAG+CGG - Chr5:57011459-57011478 MsG0580027254.01.T01:intron 30.0%
!! TTGTTCTTGCTTTTGTTGAA+AGG - Chr5:57011277-57011296 MsG0580027254.01.T01:intron 30.0%
!!! TCATTCTTTTTTTGCGTTGT+AGG - Chr5:57015224-57015243 MsG0580027254.01.T01:CDS 30.0%
AAAATCAGGAACAGAAAAGG+AGG - Chr5:57014760-57014779 MsG0580027254.01.T01:intron 35.0%
AAAGTTGTTACGTGACTGAA+AGG + Chr5:57014976-57014995 None:intergenic 35.0%
AAATCAGGAACAGAAAAGGA+GGG - Chr5:57014761-57014780 MsG0580027254.01.T01:intron 35.0%
AAGCCTTCTTTGTCAAAGTA+AGG + Chr5:57014641-57014660 None:intergenic 35.0%
AAGTCTTTGGCCAATGAAAA+TGG + Chr5:57010968-57010987 None:intergenic 35.0%
AAGTTTAGGGACCAAATTGA+AGG - Chr5:57012019-57012038 MsG0580027254.01.T01:intron 35.0%
ACAACTTTCATTCCTCTCTT+GGG + Chr5:57015395-57015414 None:intergenic 35.0%
AGCTCGTCAAACAATTTATC+CGG + Chr5:57011396-57011415 None:intergenic 35.0%
AGGGTTTGATTCTAAGTCTT+TGG + Chr5:57010981-57011000 None:intergenic 35.0%
ATAAGGTCATGAGAAAGTGA+CGG - Chr5:57011737-57011756 MsG0580027254.01.T01:CDS 35.0%
ATCCTTCCATTTCAGATATG+CGG - Chr5:57013801-57013820 MsG0580027254.01.T01:CDS 35.0%
ATGATGACTGTGACAATCAA+AGG + Chr5:57015109-57015128 None:intergenic 35.0%
ATTCAGCTTATGGCAAAATC+AGG - Chr5:57014746-57014765 MsG0580027254.01.T01:intron 35.0%
ATTTGATACTCACCATTTGG+AGG + Chr5:57014062-57014081 None:intergenic 35.0%
CAAAGAAGACTCCTGAATAT+TGG - Chr5:57012840-57012859 MsG0580027254.01.T01:CDS 35.0%
CAACCTCTTGTGTAAAAAAC+AGG + Chr5:57014931-57014950 None:intergenic 35.0%
CATAAGCTGAATAATCCACT+TGG + Chr5:57014738-57014757 None:intergenic 35.0%
CATCCTTACTTTGACAAAGA+AGG - Chr5:57014635-57014654 MsG0580027254.01.T01:intron 35.0%
CCAAAACCAACTTCATGATA+TGG - Chr5:57010879-57010898 MsG0580027254.01.T01:three_prime_UTR 35.0%
CTAAGAGGGATGATAAATAC+AGG - Chr5:57011793-57011812 MsG0580027254.01.T01:CDS 35.0%
CTGTAGATATCAAATCTGTC+AGG + Chr5:57014024-57014043 None:intergenic 35.0%
CTGTATTTATCATCCCTCTT+AGG + Chr5:57011795-57011814 None:intergenic 35.0%
GAAGGATTGTAAACAACATG+AGG + Chr5:57013788-57013807 None:intergenic 35.0%
GACTATTTATCATCCCTCTT+AGG + Chr5:57011839-57011858 None:intergenic 35.0%
GGATCCAAAAGAAACTCTTT+AGG + Chr5:57013639-57013658 None:intergenic 35.0%
GTATCACTGTCTTACTTGTT+TGG - Chr5:57012725-57012744 MsG0580027254.01.T01:intron 35.0%
GTTGCACGTCAAAATATTAC+AGG + Chr5:57015586-57015605 None:intergenic 35.0%
GTTTAGACCTACTTTCAGAA+AGG - Chr5:57011302-57011321 MsG0580027254.01.T01:intron 35.0%
TACAACTTTCATTCCTCTCT+TGG + Chr5:57015396-57015415 None:intergenic 35.0%
TACTTGTTTGGAGAAATCGA+AGG - Chr5:57012737-57012756 MsG0580027254.01.T01:intron 35.0%
TAGCACACCTCTTTAATTGA+CGG + Chr5:57014452-57014471 None:intergenic 35.0%
TATTTATCAGATCGTAAGCC+AGG + Chr5:57014412-57014431 None:intergenic 35.0%
TGAGAATGGTTTATTATGGC+AGG - Chr5:57012114-57012133 MsG0580027254.01.T01:intron 35.0%
TGATGACTGTGACAATCAAA+GGG + Chr5:57015108-57015127 None:intergenic 35.0%
TGGTCTAATATTCCTCCAAA+TGG - Chr5:57014047-57014066 MsG0580027254.01.T01:intron 35.0%
TGGTGCTTTGTCTTATCTTT+GGG - Chr5:57011218-57011237 MsG0580027254.01.T01:intron 35.0%
TGTGTTTGTGAGATTTCAGT+TGG - Chr5:57012506-57012525 MsG0580027254.01.T01:intron 35.0%
TTATCAGTCTTTCATCTGTG+AGG - Chr5:57013033-57013052 MsG0580027254.01.T01:intron 35.0%
TTCTTAGATATGATGCAGTC+AGG - Chr5:57012261-57012280 MsG0580027254.01.T01:intron 35.0%
TTGCCGTAAGCAAACTAAAA+TGG + Chr5:57012784-57012803 None:intergenic 35.0%
! AAGAGTTTCTTTTGGATCCA+AGG - Chr5:57013640-57013659 MsG0580027254.01.T01:intron 35.0%
! TCTTGAGGTAAGGATTTTTG+GGG - Chr5:57012703-57012722 MsG0580027254.01.T01:intron 35.0%
! TTGGTGCTTTGTCTTATCTT+TGG - Chr5:57011217-57011236 MsG0580027254.01.T01:intron 35.0%
! TTTTCTCTTTCCAATCCCTT+TGG + Chr5:57013344-57013363 None:intergenic 35.0%
! TTTTGTTGGAGTTGTAGGTA+TGG + Chr5:57010942-57010961 None:intergenic 35.0%
!! AAAACAGGAAAAGCATTTGG+TGG - Chr5:57015358-57015377 MsG0580027254.01.T01:CDS 35.0%
!! AGCTGTGCAGATTTTGTTTA+TGG - Chr5:57012677-57012696 MsG0580027254.01.T01:intron 35.0%
!! CAAGTGGATTATTCAGCTTA+TGG - Chr5:57014736-57014755 MsG0580027254.01.T01:intron 35.0%
!! CCATATCATGAAGTTGGTTT+TGG + Chr5:57010882-57010901 None:intergenic 35.0%
!! CTATTTGTTGTTGCTGAGAA+TGG - Chr5:57012100-57012119 MsG0580027254.01.T01:intron 35.0%
!! CTCCTGAATATTGGCTTATA+TGG - Chr5:57012849-57012868 MsG0580027254.01.T01:CDS 35.0%
!! CTGAATATTGGCTTATATGG+CGG - Chr5:57012852-57012871 MsG0580027254.01.T01:CDS 35.0%
!! GCAAAAACAGGAAAAGCATT+TGG - Chr5:57015355-57015374 MsG0580027254.01.T01:CDS 35.0%
!! TGAGATTTCAGTTGGTCTTT+GGG - Chr5:57012514-57012533 MsG0580027254.01.T01:intron 35.0%
!!! ATGAAGTTGGTTTTGGTTTG+TGG + Chr5:57010875-57010894 None:intergenic 35.0%
!!! GGATTTTTTGTTGGAGTTGT+AGG + Chr5:57010947-57010966 None:intergenic 35.0%
!!! GGCAGGATGATTTTGTTTTA+GGG - Chr5:57012131-57012150 MsG0580027254.01.T01:intron 35.0%
!!! TACCCTGTTTTTTACACAAG+AGG - Chr5:57014925-57014944 MsG0580027254.01.T01:intron 35.0%
!!! TGAAGTTGGTTTTGGTTTGT+GGG + Chr5:57010874-57010893 None:intergenic 35.0%
!!! TGGCAGGATGATTTTGTTTT+AGG - Chr5:57012130-57012149 MsG0580027254.01.T01:intron 35.0%
!!! TTTGTTTTAGGGAAGAAGCT+GGG - Chr5:57012142-57012161 MsG0580027254.01.T01:intron 35.0%
!!! TTTTGTTTTAGGGAAGAAGC+TGG - Chr5:57012141-57012160 MsG0580027254.01.T01:intron 35.0%
AATCCATTCAGCACCATGAA+TGG + Chr5:57011055-57011074 None:intergenic 40.0%
AATTCCTTTGGTTGCAACAG+TGG + Chr5:57010905-57010924 None:intergenic 40.0%
ACAAGATTTGCCAAAGGGAT+TGG - Chr5:57013331-57013350 MsG0580027254.01.T01:intron 40.0%
ACATTCAAGCCACTAGACTT+AGG + Chr5:57011171-57011190 None:intergenic 40.0%
ACTCAACTGGTATTGTGCAT+AGG - Chr5:57013417-57013436 MsG0580027254.01.T01:intron 40.0%
ACTCTGCAATAGATCAGCTA+AGG + Chr5:57012894-57012913 None:intergenic 40.0%
ACTGTTGCAACCAAAGGAAT+TGG - Chr5:57010904-57010923 MsG0580027254.01.T01:three_prime_UTR 40.0%
AGTTTAACCTGCCATAAGAC+TGG + Chr5:57013898-57013917 None:intergenic 40.0%
ATCACCACAAAAGCCATTCA+TGG - Chr5:57011039-57011058 MsG0580027254.01.T01:three_prime_UTR 40.0%
ATTCACTGAAGCTCAACTAC+AGG - Chr5:57014787-57014806 MsG0580027254.01.T01:intron 40.0%
CAAAAGCAAGAACAACACCA+GGG + Chr5:57011200-57011219 None:intergenic 40.0%
CAACACCAACACCTACAAAA+AGG + Chr5:57011095-57011114 None:intergenic 40.0%
CAACTCTTGTTCGCATTAGA+CGG - Chr5:57013389-57013408 MsG0580027254.01.T01:intron 40.0%
CAATGGTCCGATATAAAGCA+AGG - Chr5:57014582-57014601 MsG0580027254.01.T01:intron 40.0%
CACAGTCATCATCTTCTTAG+TGG - Chr5:57015117-57015136 MsG0580027254.01.T01:intron 40.0%
CGCCATATAAGCCAATATTC+AGG + Chr5:57012854-57012873 None:intergenic 40.0%
CTCAACTGGTATTGTGCATA+GGG - Chr5:57013418-57013437 MsG0580027254.01.T01:intron 40.0%
CTCATCCATACTCTCGTTTA+AGG + Chr5:57015331-57015350 None:intergenic 40.0%
CTTCAGCTCTTAAAGTGCAA+AGG - Chr5:57015292-57015311 MsG0580027254.01.T01:CDS 40.0%
CTTCCTAACTTGAGTCATCA+AGG + Chr5:57013749-57013768 None:intergenic 40.0%
CTTGAGCTGTTGGATTTAGA+TGG - Chr5:57014533-57014552 MsG0580027254.01.T01:intron 40.0%
CTTTGACAAAGAAGGCTTGT+TGG - Chr5:57014643-57014662 MsG0580027254.01.T01:intron 40.0%
CTTTGTGACTCCAATTCCTT+TGG + Chr5:57010917-57010936 None:intergenic 40.0%
GAAACTTCGATCAGTAGAGT+AGG + Chr5:57013686-57013705 None:intergenic 40.0%
GAGGTACAAGATTTGCCAAA+GGG - Chr5:57013326-57013345 MsG0580027254.01.T01:intron 40.0%
GCCTTTGCCTTGCTTTATAT+CGG + Chr5:57014592-57014611 None:intergenic 40.0%
GGCAAAATCAGGAACAGAAA+AGG - Chr5:57014757-57014776 MsG0580027254.01.T01:intron 40.0%
TCCGATATAAAGCAAGGCAA+AGG - Chr5:57014588-57014607 MsG0580027254.01.T01:intron 40.0%
TGAGGTACAAGATTTGCCAA+AGG - Chr5:57013325-57013344 MsG0580027254.01.T01:intron 40.0%
TTGAAGAAGGCGACTGAATA+TGG - Chr5:57012605-57012624 MsG0580027254.01.T01:CDS 40.0%
! ATGGGAACTTTTGACGTCAA+TGG - Chr5:57014565-57014584 MsG0580027254.01.T01:intron 40.0%
! CACAACCTTTTTGTAGGTGT+TGG - Chr5:57011087-57011106 MsG0580027254.01.T01:CDS 40.0%
! CAGTCTTGTATTTGTCAACG+AGG + Chr5:57014183-57014202 None:intergenic 40.0%
! GATCCTTGATGACTCAAGTT+AGG - Chr5:57013743-57013762 MsG0580027254.01.T01:intron 40.0%
! GTGATGGTGCCAAAAATTTC+AGG - Chr5:57013283-57013302 MsG0580027254.01.T01:intron 40.0%
! TAAAGAGGTGTGCTATGACT+TGG - Chr5:57014457-57014476 MsG0580027254.01.T01:intron 40.0%
! TCAGCTCACAACCTTTTTGT+AGG - Chr5:57011081-57011100 MsG0580027254.01.T01:CDS 40.0%
! TTACACAAGAGGTTGTTTCC+AGG - Chr5:57014936-57014955 MsG0580027254.01.T01:intron 40.0%
!! AGGTGACTTAGTCTTGAAGA+AGG - Chr5:57012592-57012611 MsG0580027254.01.T01:CDS 40.0%
!! ATTTAGATGGCGGAATAGGA+TGG - Chr5:57014546-57014565 MsG0580027254.01.T01:intron 40.0%
!! CAGGTCGAAACATTGATTCT+TGG - Chr5:57013302-57013321 MsG0580027254.01.T01:intron 40.0%
!! CGAAACATTGATTCTTGGTG+AGG - Chr5:57013307-57013326 MsG0580027254.01.T01:intron 40.0%
!! GTGAGATTTCAGTTGGTCTT+TGG - Chr5:57012513-57012532 MsG0580027254.01.T01:intron 40.0%
!! TTGGATTTAGATGGCGGAAT+AGG - Chr5:57014542-57014561 MsG0580027254.01.T01:intron 40.0%
!! TTTAGATGGCGGAATAGGAT+GGG - Chr5:57014547-57014566 MsG0580027254.01.T01:intron 40.0%
!!! AAATTTTTGGCACCATCACC+GGG + Chr5:57013282-57013301 None:intergenic 40.0%
!!! ACTTTTTGGTTCTCACTGGA+AGG - Chr5:57012568-57012587 MsG0580027254.01.T01:intron 40.0%
!!! CTTTTTGTAGGTGTTGGTGT+TGG - Chr5:57011093-57011112 MsG0580027254.01.T01:CDS 40.0%
!!! GAAATTTTTGGCACCATCAC+CGG + Chr5:57013283-57013302 None:intergenic 40.0%
!!! GTTTTTTCGAGCAACACAAC+AGG - Chr5:57014697-57014716 MsG0580027254.01.T01:intron 40.0%
!!! TGGTACTTTTTGGTTCTCAC+TGG - Chr5:57012564-57012583 MsG0580027254.01.T01:intron 40.0%
!!! TTGTTTTAGGGAAGAAGCTG+GGG - Chr5:57012143-57012162 MsG0580027254.01.T01:intron 40.0%
AAAAAACCAGGAGCAACACC+AGG + Chr5:57011249-57011268 None:intergenic 45.0%
ACAACTTTACCGTTGCACCA+AGG - Chr5:57014988-57015007 MsG0580027254.01.T01:intron 45.0%
AGCACTCTTCCTAAGTCTAG+TGG - Chr5:57011159-57011178 MsG0580027254.01.T01:CDS 45.0%
ATGAATCTTGCACTGCATGG+TGG + Chr5:57011021-57011040 None:intergenic 45.0%
ATGCAGTCAGGATACAAGCT+GGG - Chr5:57012273-57012292 MsG0580027254.01.T01:intron 45.0%
ATTATGGAGAAGCTGCCAAG+TGG - Chr5:57014720-57014739 MsG0580027254.01.T01:intron 45.0%
CACATGCTATACCCACAAGT+TGG + Chr5:57012490-57012509 None:intergenic 45.0%
CAGTGGCCATATCATGAAGT+TGG + Chr5:57010888-57010907 None:intergenic 45.0%
CCAAAAGCAAGAACAACACC+AGG + Chr5:57011201-57011220 None:intergenic 45.0%
CGAGCAACACAACAGGATTA+TGG - Chr5:57014704-57014723 MsG0580027254.01.T01:intron 45.0%
CTGCAATAGATCAGCTAAGG+TGG + Chr5:57012891-57012910 None:intergenic 45.0%
GAAAGTGACGGTTACCAAAC+AGG - Chr5:57011749-57011768 MsG0580027254.01.T01:CDS 45.0%
GAGCTGTTGGATTTAGATGG+CGG - Chr5:57014536-57014555 MsG0580027254.01.T01:intron 45.0%
GCTTATATGGCGGTTTGAAG+GGG - Chr5:57012862-57012881 MsG0580027254.01.T01:CDS 45.0%
GGAAATTGTGCCCAAGAAGA+AGG - Chr5:57015245-57015264 MsG0580027254.01.T01:CDS 45.0%
GGCTTATATGGCGGTTTGAA+GGG - Chr5:57012861-57012880 MsG0580027254.01.T01:CDS 45.0%
GTGATGAATCTTGCACTGCA+TGG + Chr5:57011024-57011043 None:intergenic 45.0%
GTGCTCATAATGTACTGCTC+TGG + Chr5:57013829-57013848 None:intergenic 45.0%
GTTACGTGACTGAAAGGTCA+CGG + Chr5:57014970-57014989 None:intergenic 45.0%
TCTTATCTTTGGGCTACACC+TGG - Chr5:57011228-57011247 MsG0580027254.01.T01:intron 45.0%
TGGATGAGCTCAGCAAAAAC+AGG - Chr5:57015343-57015362 MsG0580027254.01.T01:CDS 45.0%
TGGCTTATATGGCGGTTTGA+AGG - Chr5:57012860-57012879 MsG0580027254.01.T01:CDS 45.0%
TTACGTGACTGAAAGGTCAC+GGG + Chr5:57014969-57014988 None:intergenic 45.0%
TTAGACGGTCTTCACTCAAC+TGG - Chr5:57013404-57013423 MsG0580027254.01.T01:intron 45.0%
! AAAGCATTTGGTGGAGGAGA+TGG - Chr5:57015367-57015386 MsG0580027254.01.T01:CDS 45.0%
! AAGCCATTCATGGTGCTGAA+TGG - Chr5:57011049-57011068 MsG0580027254.01.T01:three_prime_UTR 45.0%
! AGCACCATGAATGGCTTTTG+TGG + Chr5:57011046-57011065 None:intergenic 45.0%
! GGTGGTGGTTCATTGTTTGA+GGG + Chr5:57011000-57011019 None:intergenic 45.0%
! TACCTTTGAAGAGGGCTTCT+TGG + Chr5:57012206-57012225 None:intergenic 45.0%
! TGCCGCATATCTGAAATGGA+AGG + Chr5:57013806-57013825 None:intergenic 45.0%
!! ACAGGAAAAGCATTTGGTGG+AGG - Chr5:57015361-57015380 MsG0580027254.01.T01:CDS 45.0%
!! CTATGACTTGGTTGCATGGA+GGG - Chr5:57014469-57014488 MsG0580027254.01.T01:intron 45.0%
!! TGGTGGTGGTTCATTGTTTG+AGG + Chr5:57011001-57011020 None:intergenic 45.0%
!! TGTGCTATGACTTGGTTGCA+TGG - Chr5:57014465-57014484 MsG0580027254.01.T01:intron 45.0%
!! TTTGGTTCTCACTGGAAGGA+AGG - Chr5:57012572-57012591 MsG0580027254.01.T01:CDS 45.0%
!!! AATTTTTGGCACCATCACCG+GGG + Chr5:57013281-57013300 None:intergenic 45.0%
!!! CAAGGCTCCCTATTTTTGGA+GGG - Chr5:57015006-57015025 MsG0580027254.01.T01:intron 45.0%
!!! CCTGGTGTTGTTCTTGCTTT+TGG - Chr5:57011198-57011217 MsG0580027254.01.T01:CDS 45.0%
!!! TGTTTTAGGGAAGAAGCTGG+GGG - Chr5:57012144-57012163 MsG0580027254.01.T01:intron 45.0%
!!! AAACTTTTTTATAAAATTTA+AGG + Chr5:57012996-57013015 None:intergenic 5.0%
!!! AAATTAAAGAATTTTTTTAT+AGG - Chr5:57015034-57015053 MsG0580027254.01.T01:intron 5.0%
!!! AATTAAAGAATTTTTTTATA+GGG - Chr5:57015035-57015054 MsG0580027254.01.T01:intron 5.0%
!!! ATATTTATTTTTTTCAATTA+AGG - Chr5:57011623-57011642 MsG0580027254.01.T01:intron 5.0%
AAAACTGTGGAGCCTCGATG+TGG - Chr5:57014492-57014511 MsG0580027254.01.T01:intron 50.0%
AATCTTGCACTGCATGGTGG+TGG + Chr5:57011018-57011037 None:intergenic 50.0%
AGCCAAGAAGCCCTCTTCAA+AGG - Chr5:57012201-57012220 MsG0580027254.01.T01:intron 50.0%
ATCCATAACCGACATGTCCC+TGG - Chr5:57011874-57011893 MsG0580027254.01.T01:CDS 50.0%
ATGGCCACTGTTGCAACCAA+AGG - Chr5:57010898-57010917 MsG0580027254.01.T01:three_prime_UTR 50.0%
ATTGTGCCCAAGAAGAAGGC+TGG - Chr5:57015249-57015268 MsG0580027254.01.T01:CDS 50.0%
CCTCCAAAAATAGGGAGCCT+TGG + Chr5:57015008-57015027 None:intergenic 50.0%
CTGCACTCTCTCCAGTCTTA+TGG - Chr5:57013884-57013903 MsG0580027254.01.T01:intron 50.0%
GATGCAGTCAGGATACAAGC+TGG - Chr5:57012272-57012291 MsG0580027254.01.T01:intron 50.0%
GGCTTGAATGTTACTGTCCC+TGG - Chr5:57011180-57011199 MsG0580027254.01.T01:CDS 50.0%
GTTGCATGGAGGGAAAACTG+TGG - Chr5:57014479-57014498 MsG0580027254.01.T01:intron 50.0%
GTTTCGATCCAGGGACATGT+CGG + Chr5:57011885-57011904 None:intergenic 50.0%
TCAGGAACAGAAAAGGAGGG+TGG - Chr5:57014764-57014783 MsG0580027254.01.T01:intron 50.0%
TGCAGTCAGGATACAAGCTG+GGG - Chr5:57012274-57012293 MsG0580027254.01.T01:intron 50.0%
TGGACTTCCATGCACTGTGA+TGG - Chr5:57011113-57011132 MsG0580027254.01.T01:CDS 50.0%
TGTGCACCAGCCTTCTTCTT+GGG + Chr5:57015258-57015277 None:intergenic 50.0%
TTAGGAGAGGCTTGAGCTGT+TGG - Chr5:57014523-57014542 MsG0580027254.01.T01:intron 50.0%
TTGTGCACCAGCCTTCTTCT+TGG + Chr5:57015259-57015278 None:intergenic 50.0%
TTTGCTGGACACTCGACAGA+TGG - Chr5:57014847-57014866 MsG0580027254.01.T01:intron 50.0%
! AATAGGGAGCCTTGGTGCAA+CGG + Chr5:57015000-57015019 None:intergenic 50.0%
! ACTCTCTCCAGTCTTATGGC+AGG - Chr5:57013888-57013907 MsG0580027254.01.T01:intron 50.0%
! ATCCAGGGACATGTCGGTTA+TGG + Chr5:57011879-57011898 None:intergenic 50.0%
! GCACCAAGGCTCCCTATTTT+TGG - Chr5:57015002-57015021 MsG0580027254.01.T01:intron 50.0%
!! CTGGTGCCGCATATCTGAAA+TGG + Chr5:57013810-57013829 None:intergenic 50.0%
!! GCTATGACTTGGTTGCATGG+AGG - Chr5:57014468-57014487 MsG0580027254.01.T01:intron 50.0%
!!! CCAAGGCTCCCTATTTTTGG+AGG - Chr5:57015005-57015024 MsG0580027254.01.T01:intron 50.0%
AAGCTGGGGGAGGGATCATT+TGG - Chr5:57012157-57012176 MsG0580027254.01.T01:intron 55.0%
AAGGTCACGGGTTCAAGTCC+TGG + Chr5:57014957-57014976 None:intergenic 55.0%
CAGAGCCTCGTTTCGATCCA+GGG + Chr5:57011894-57011913 None:intergenic 55.0%
CATGTCCCTGGATCGAAACG+AGG - Chr5:57011886-57011905 MsG0580027254.01.T01:CDS 55.0%
CCACACTCCATCACAGTGCA+TGG + Chr5:57011123-57011142 None:intergenic 55.0%
CTAAGTTCAGCGCCACATCG+AGG + Chr5:57014507-57014526 None:intergenic 55.0%
GAGGAGATGGATCCCAAGAG+AGG - Chr5:57015380-57015399 MsG0580027254.01.T01:CDS 55.0%
GCAGTCAGGATACAAGCTGG+GGG - Chr5:57012275-57012294 MsG0580027254.01.T01:intron 55.0%
GCAGTTGCAACTGGAGCTGA+GGG + Chr5:57013868-57013887 None:intergenic 55.0%
GCTGCTACAGACTTGCGAGT+TGG - Chr5:57013600-57013619 MsG0580027254.01.T01:CDS 55.0%
TCAGAGCCTCGTTTCGATCC+AGG + Chr5:57011895-57011914 None:intergenic 55.0%
TGCAGTTGCAACTGGAGCTG+AGG + Chr5:57013869-57013888 None:intergenic 55.0%
TGTACGAGACCCTGAGACCA+TGG + Chr5:57013559-57013578 None:intergenic 55.0%
TTAGGGAAGAAGCTGGGGGA+GGG - Chr5:57012148-57012167 MsG0580027254.01.T01:intron 55.0%
TTTAGGGAAGAAGCTGGGGG+AGG - Chr5:57012147-57012166 MsG0580027254.01.T01:intron 55.0%
! CCATGCACTGTGATGGAGTG+TGG - Chr5:57011120-57011139 MsG0580027254.01.T01:CDS 55.0%
! CTCGATGTGGCGCTGAACTT+AGG - Chr5:57014505-57014524 MsG0580027254.01.T01:intron 55.0%
! GGAGAGAGTGCAGTTGCAAC+TGG + Chr5:57013877-57013896 None:intergenic 55.0%
! TGTGGCGCTGAACTTAGGAG+AGG - Chr5:57014510-57014529 MsG0580027254.01.T01:intron 55.0%
AAGGTCGCCAGTATCAGCCC+CGG - Chr5:57013261-57013280 MsG0580027254.01.T01:intron 60.0%
ACCATCACCGGGGCTGATAC+TGG + Chr5:57013271-57013290 None:intergenic 60.0%
! ACTGGAGCTGAGGGTGCAGA+TGG + Chr5:57013859-57013878 None:intergenic 60.0%
!! CTTGCACTGCATGGTGGTGG+TGG + Chr5:57011015-57011034 None:intergenic 60.0%
!! GCTACACCTGGTGTTGCTCC+TGG - Chr5:57011240-57011259 MsG0580027254.01.T01:intron 60.0%
GCCAGTATCAGCCCCGGTGA+TGG - Chr5:57013267-57013286 MsG0580027254.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 57010833 57015647 57010833 ID=MsG0580027254.01;Name=MsG0580027254.01
Chr5 mRNA 57010833 57015647 57010833 ID=MsG0580027254.01.T01;Parent=MsG0580027254.01;Name=MsG0580027254.01.T01;_AED=0.31;_eAED=0.31;_QI=65|0.75|0.77|1|1|1|9|240|477
Chr5 exon 57010833 57011234 57010833 ID=MsG0580027254.01.T01:exon:42236;Parent=MsG0580027254.01.T01
Chr5 exon 57011663 57011953 57011663 ID=MsG0580027254.01.T01:exon:42235;Parent=MsG0580027254.01.T01
Chr5 exon 57012412 57012468 57012412 ID=MsG0580027254.01.T01:exon:42234;Parent=MsG0580027254.01.T01
Chr5 exon 57012571 57012664 57012571 ID=MsG0580027254.01.T01:exon:42233;Parent=MsG0580027254.01.T01
Chr5 exon 57012819 57012912 57012819 ID=MsG0580027254.01.T01:exon:42232;Parent=MsG0580027254.01.T01
Chr5 exon 57013545 57013647 57013545 ID=MsG0580027254.01.T01:exon:42231;Parent=MsG0580027254.01.T01
Chr5 exon 57013771 57013890 57013771 ID=MsG0580027254.01.T01:exon:42230;Parent=MsG0580027254.01.T01
Chr5 exon 57014258 57014344 57014258 ID=MsG0580027254.01.T01:exon:42229;Parent=MsG0580027254.01.T01
Chr5 exon 57015157 57015647 57015157 ID=MsG0580027254.01.T01:exon:42228;Parent=MsG0580027254.01.T01
Chr5 five_prime_UTR 57015583 57015647 57015583 ID=MsG0580027254.01.T01:five_prime_utr;Parent=MsG0580027254.01.T01
Chr5 CDS 57015157 57015582 57015157 ID=MsG0580027254.01.T01:cds;Parent=MsG0580027254.01.T01
Chr5 CDS 57014258 57014344 57014258 ID=MsG0580027254.01.T01:cds;Parent=MsG0580027254.01.T01
Chr5 CDS 57013771 57013890 57013771 ID=MsG0580027254.01.T01:cds;Parent=MsG0580027254.01.T01
Chr5 CDS 57013545 57013647 57013545 ID=MsG0580027254.01.T01:cds;Parent=MsG0580027254.01.T01
Chr5 CDS 57012819 57012912 57012819 ID=MsG0580027254.01.T01:cds;Parent=MsG0580027254.01.T01
Chr5 CDS 57012571 57012664 57012571 ID=MsG0580027254.01.T01:cds;Parent=MsG0580027254.01.T01
Chr5 CDS 57012412 57012468 57012412 ID=MsG0580027254.01.T01:cds;Parent=MsG0580027254.01.T01
Chr5 CDS 57011663 57011953 57011663 ID=MsG0580027254.01.T01:cds;Parent=MsG0580027254.01.T01
Chr5 CDS 57011073 57011234 57011073 ID=MsG0580027254.01.T01:cds;Parent=MsG0580027254.01.T01
Chr5 three_prime_UTR 57010833 57011072 57010833 ID=MsG0580027254.01.T01:three_prime_utr;Parent=MsG0580027254.01.T01
Gene Sequence

>MsG0580027254.01.T01

ATGGCCACTGTTGCAACCAAAGGAATTGGAGTCACAAAGCTCCATACCTACAACTCCAACAAAAAATCCATTTTCATTGGCCAAAGACTTAGAATCAAACCCTCAAACAATGAACCACCACCACCATGCAGTGCAAGATTCATCACCACAAAAGCCATTCATGGTGCTGAATGGATTCTTGAATCAGCTCACAACCTTTTTGTAGGTGTTGGTGTTGGACTTCCATGCACTGTGATGGAGTGTGGAGATATGATCTATAGAAGCACTCTTCCTAAGTCTAGTGGCTTGAATGTTACTGTCCCTGGTGTTGTTCTTGCTTTTGGTGCTTTGTCTTATCTTTGGGCTACACCTGGTGTTGCTCCTGGTTTTTTTGATATGTTTGTTCTTGCTTTTGTTGAAAGGTTGTTTAGACCTACTTTCAGAAAGGATGATTTTGTTTTAGGGAAGAAGCTGGGGGAGGGATCATTTGGAGTTGTTTATAGAGTGACACTAGCCAAGAAGCCCTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAGGCGACTGAATATGGTGCTGTAGAAATTTGGATGAATGAACGAGTACGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTATGGTTTTCTTGAGAGGTCTACAAAGAAGACTCCTGAATATTGGCTTATATGGCGGTTTGAAGGGGATGCCACCTTAGCTGATCTATTGCAGAGTAGAGATTTTCCATATAATGTTGGGTCTCGTACATTCAAAATAATTGATCTTGGAGCTGCTACAGACTTGCGAGTTGGCATTAACTACATTCCTAAAGAGTTTCTTTTGGATCCAAGATATGCGGCACCAGAGCAGTACATTATGAGCACACAAACTCCATCTGCACCCTCAGCTCCAGTTGCAACTGCACTCTCTCCAGTCTTATGGCAGTTGAATCTTCCTGACAGATTTGATATCTACAGTACTGGTCTAATATTCCTCCAAATGGAGAGGCTTGAGCTGTTGGATTTAGATGGCGGAATAGGATGGGAACTTTTGACGTCAATGGTCCGATATAAAGCAAGGCAAAGGCTGAGTGCTAAAGCAGCGTTAGCTCATCCTTACTTTGACAAAGAAGGCTTGTTGGCATTATCTATCATGCAAAATCTGAGGCTTAAGTTTTTTCGAGCAACACAACAGGATTATGGAGAAGCTGCCAAGTGGATTATTCAGCTTATGGCAAAATCAGGAACAGAAAAGGAGGGTGGATTCACTGAAGCTCAACTACAGGAACTTAGAGAAATTGTGCCCAAGAAGAAGGCTGGTGCACAAAGAAATGCTCTAGCTTCAGCTCTTAAAGTGCAAAGGAAAATTATAAAAACCTTAAACGAGAGTATGGATGAGCTCAGCAAAAACAGGAAAAGCATTTGGTGGAGGAGATGGATCCCAAGAGAGGAATGA

Protein sequence

>MsG0580027254.01.T01

MATVATKGIGVTKLHTYNSNKKSIFIGQRLRIKPSNNEPPPPCSARFITTKAIHGAEWILESAHNLFVGVGVGLPCTVMECGDMIYRSTLPKSSGLNVTVPGVVLAFGALSYLWATPGVAPGFFDMFVLAFVERLFRPTFRKDDFVLGKKLGEGSFGVVYRVTLAKKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLERSTKKTPEYWLIWRFEGDATLADLLQSRDFPYNVGSRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSTGLIFLQMERLELLDLDGGIGWELLTSMVRYKARQRLSAKAALAHPYFDKEGLLALSIMQNLRLKFFRATQQDYGEAAKWIIQLMAKSGTEKEGGFTEAQLQELREIVPKKKAGAQRNALASALKVQRKIIKTLNESMDELSKNRKSIWWRRWIPREE*