AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020393.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020393.01.T01 MTR_4g050000 48.323 507 131 12 3 380 239 743 1.44e-124 376
MsG0480020393.01.T01 MTR_2g087960 32.899 307 98 7 1 223 243 525 2.02e-38 145
MsG0480020393.01.T01 MTR_2g087960 32.899 307 98 7 1 223 243 525 3.57e-38 145
MsG0480020393.01.T01 MTR_2g087960 47.134 157 74 3 223 375 594 745 2.03e-35 138
MsG0480020393.01.T01 MTR_2g087980 32.333 300 95 7 8 223 240 515 8.72e-36 139
MsG0480020393.01.T01 MTR_2g087980 41.667 180 96 3 202 377 563 737 5.29e-35 136
MsG0480020393.01.T01 MTR_2g087900 46.835 158 83 1 223 380 599 755 1.92e-34 135
MsG0480020393.01.T01 MTR_2g087900 44.000 150 57 4 74 223 407 529 2.85e-28 117
MsG0480020393.01.T01 MTR_2g087900 44.000 150 57 4 74 223 407 529 3.56e-28 116
MsG0480020393.01.T01 MTR_2g087950 43.333 150 65 3 223 366 588 723 2.01e-24 105
MsG0480020393.01.T01 MTR_2g087950 34.615 156 77 4 68 223 391 521 5.20e-23 101
MsG0480020393.01.T01 MTR_8g086600 32.335 167 84 6 75 241 630 767 1.74e-11 66.2
MsG0480020393.01.T01 MTR_8g092590 32.749 171 84 6 71 241 735 874 4.11e-11 65.1
MsG0480020393.01.T01 MTR_4g130510 33.333 147 71 5 72 218 711 830 4.12e-11 65.1
MsG0480020393.01.T01 MTR_4g130510 33.333 147 71 5 72 218 677 796 4.20e-11 65.1
MsG0480020393.01.T01 MTR_4g130510 33.562 146 70 5 72 217 677 795 6.27e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020393.01.T01 AT2G32540 35.366 164 92 3 222 374 592 752 4.59e-19 89.7
MsG0480020393.01.T01 AT2G32530 33.333 165 94 4 222 374 592 752 1.16e-15 79.3
MsG0480020393.01.T01 AT4G15320 34.228 149 65 4 74 219 490 608 2.38e-15 78.2
MsG0480020393.01.T01 AT4G15320 34.228 149 65 4 74 219 401 519 2.51e-15 78.2
MsG0480020393.01.T01 AT4G15320 31.737 167 97 4 221 371 588 753 2.68e-14 75.1
MsG0480020393.01.T01 AT4G15320 34.228 149 65 4 74 219 401 519 2.71e-15 78.2
MsG0480020393.01.T01 AT4G15320 31.765 170 99 4 221 374 588 756 1.10e-14 76.3
MsG0480020393.01.T01 AT4G15320 34.228 149 65 4 74 219 447 565 2.80e-15 78.2
MsG0480020393.01.T01 AT4G15320 34.694 147 63 4 74 217 416 532 2.81e-15 78.2
MsG0480020393.01.T01 AT4G15320 31.765 170 99 4 221 374 603 771 1.25e-14 75.9
MsG0480020393.01.T01 AT2G32620 31.515 165 100 4 222 374 495 658 1.87e-12 69.3
MsG0480020393.01.T01 AT2G32620 31.515 165 100 4 222 374 591 754 2.13e-12 68.9
MsG0480020393.01.T01 AT2G32610 30.994 171 94 5 222 374 592 756 3.77e-12 68.2
MsG0480020393.01.T01 AT1G32180 30.918 207 91 8 65 253 595 767 9.81e-12 67.0
MsG0480020393.01.T01 AT1G32180 30.918 207 91 8 65 253 595 767 9.81e-12 67.0
MsG0480020393.01.T01 AT4G15290 32.716 162 97 3 222 371 590 751 1.50e-11 66.6
MsG0480020393.01.T01 AT5G09870 32.749 171 84 7 71 241 708 847 4.13e-11 65.1
MsG0480020393.01.T01 AT5G64740 32.749 171 84 7 71 241 723 862 5.85e-11 64.7

Find 132 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCAAGCTGGGATAGATTT+TGG 0.116990 4:-40437580 None:intergenic
AAAAGTACAATGTGCAAATT+AGG 0.142681 4:+40437285 MsG0480020393.01.T01:five_prime_UTR
CATGAATTTATAAGGTTATA+TGG 0.149825 4:+40438520 MsG0480020393.01.T01:intron
CTATTTGAAACGGGTAAATT+TGG 0.159647 4:+40441044 MsG0480020393.01.T01:CDS
AGTGGAGTTAAAACAAAATT+TGG 0.167953 4:+40439312 MsG0480020393.01.T01:intron
AATTGATCTTGTTGGAATTT+AGG 0.205112 4:+40439629 MsG0480020393.01.T01:CDS
TTTCAGCCACAAAGTTTAAA+TGG 0.208113 4:+40440945 MsG0480020393.01.T01:CDS
ACCATTCTTGTCTGAATTCT+TGG 0.215541 4:-40437355 None:intergenic
CTAAGTAGAAGGACAATTTC+TGG 0.216905 4:+40441122 MsG0480020393.01.T01:CDS
TCATAGAGTGGAAGAGAGTT+TGG 0.245382 4:-40435737 None:intergenic
ATGTAGCGGTTAATAAATTT+TGG 0.256961 4:+40439569 MsG0480020393.01.T01:CDS
GCTATCGAAGTTGCTTCTTA+TGG 0.273391 4:+40439429 MsG0480020393.01.T01:CDS
TGTATTTGATCATATGTTAT+TGG 0.310371 4:+40441006 MsG0480020393.01.T01:CDS
TGAAGAGCATAGAAGATTAC+AGG 0.314702 4:-40437222 None:intergenic
GCAATATTTATCAAGTTGTT+TGG 0.318110 4:+40440921 MsG0480020393.01.T01:CDS
CACAAACAGTACCTTGATTA+TGG 0.319801 4:-40437650 None:intergenic
ATGACAGAAGATATACTAAC+TGG 0.326040 4:+40439671 MsG0480020393.01.T01:CDS
ACTGTTCTACTCAAATTGTT+AGG 0.328449 4:+40440753 MsG0480020393.01.T01:CDS
TAATTTCCATTTAAACTTTG+TGG 0.330588 4:-40440951 None:intergenic
TTGAAATGATGTGGTTGCTT+TGG 0.334476 4:-40438605 None:intergenic
ACAGGTTGTGCTCCAATTGA+TGG 0.341818 4:+40439754 MsG0480020393.01.T01:CDS
TCATCACAAAAGTATCTAAA+TGG 0.346788 4:-40437311 None:intergenic
AGAATTTACCAACACATTCA+TGG 0.350129 4:-40438636 None:intergenic
GGAAATTGAATTGATCTTGT+TGG 0.356211 4:+40439621 MsG0480020393.01.T01:CDS
ATGAATTTATAAGGTTATAT+GGG 0.361401 4:+40438521 MsG0480020393.01.T01:intron
TTGTCTGAATTCTTGGTCAT+TGG 0.361801 4:-40437348 None:intergenic
TTCAAAATTTGCAAAACATT+GGG 0.368080 4:+40437251 MsG0480020393.01.T01:five_prime_UTR
AAACATGGTTCACCTTATCT+TGG 0.371514 4:+40435890 MsG0480020393.01.T01:five_prime_UTR
TATTTGAAACGGGTAAATTT+GGG 0.371926 4:+40441045 MsG0480020393.01.T01:CDS
GCTTGTTACGTTTCTGATGA+TGG 0.375639 4:+40437192 MsG0480020393.01.T01:five_prime_UTR
TACACTCAAGACGATCCTTT+TGG 0.376934 4:+40438905 MsG0480020393.01.T01:CDS
GAAATCAGTTAGTCATGCTT+TGG 0.381366 4:+40439353 MsG0480020393.01.T01:CDS
TTAGTCATGCTTTGGAAGAT+AGG 0.384348 4:+40439361 MsG0480020393.01.T01:CDS
ATCAATATCACTAGCTGAAT+AGG 0.385336 4:-40439385 None:intergenic
AATTTAGGTGGGTGGATGTA+TGG 0.391258 4:+40439644 MsG0480020393.01.T01:CDS
AAAGTACAATGTGCAAATTA+GGG 0.395555 4:+40437286 MsG0480020393.01.T01:five_prime_UTR
CCTGTGAAGGCTATTGGTTC+TGG 0.400123 4:-40439736 None:intergenic
CATAGAGTGGAAGAGAGTTT+GGG 0.403453 4:-40435736 None:intergenic
ATACAGGTGGGGCCATCAAT+TGG 0.406422 4:-40439766 None:intergenic
AAACAATAAGATGGTAGTCC+TGG 0.411035 4:-40440887 None:intergenic
TACCTTTGGAGGAGACGGTC+AGG 0.411734 4:-40435961 None:intergenic
GAGTGTAGCATAGAATTGTT+GGG 0.411780 4:-40438889 None:intergenic
GCACAACCTGTGAAGGCTAT+TGG 0.414383 4:-40439742 None:intergenic
CTTCAAAATTTGCAAAACAT+TGG 0.416834 4:+40437250 MsG0480020393.01.T01:five_prime_UTR
TGGGCTGACGATACACAAAA+AGG 0.417073 4:+40439691 MsG0480020393.01.T01:CDS
TGAACAACTACTCTATTCCT+TGG 0.420933 4:+40435848 MsG0480020393.01.T01:five_prime_UTR
TTGGTACAAACACTTACAAA+AGG 0.425901 4:+40435766 MsG0480020393.01.T01:five_prime_UTR
TGAGTGTAGCATAGAATTGT+TGG 0.428602 4:-40438890 None:intergenic
ACAGTGTTTATTGTGATGAT+TGG 0.432496 4:-40437129 None:intergenic
GCTTCTTATGGATATGAATA+CGG 0.432768 4:+40439441 MsG0480020393.01.T01:CDS
AACAAAATTTGGAGCTTCAA+AGG 0.438966 4:+40439323 MsG0480020393.01.T01:CDS
GATATGAATACGGCACTGGC+TGG 0.441391 4:+40439451 MsG0480020393.01.T01:CDS
TCTCTTATGTTGAGCCATAC+AGG 0.444479 4:-40439782 None:intergenic
TTGAGAGGACTATTTGAAAC+GGG 0.456847 4:+40441035 MsG0480020393.01.T01:CDS
AATTGATGGCCCCACCTGTA+TGG 0.457674 4:+40439768 MsG0480020393.01.T01:CDS
GCAAACTCTCTTCAGCAAGC+TGG 0.459945 4:-40437592 None:intergenic
AACAGTACCTTGATTATGGC+TGG 0.473416 4:-40437646 None:intergenic
GTTGGCCATTGATCTTAGTA+AGG 0.477725 4:-40435714 None:intergenic
GGTAACCAAGCAACAACAAA+AGG 0.481449 4:-40435815 None:intergenic
AGAATAACATCTATGAATGC+TGG 0.482111 4:+40440714 MsG0480020393.01.T01:CDS
ATATGAATACGGCACTGGCT+GGG 0.484690 4:+40439452 MsG0480020393.01.T01:CDS
ATTGCCATTTGATTTCCAAA+AGG 0.492263 4:-40438920 None:intergenic
TATCACCTTACTAAGATCAA+TGG 0.494593 4:+40435709 MsG0480020393.01.T01:five_prime_UTR
TATGAATACGGCACTGGCTG+GGG 0.500144 4:+40439453 MsG0480020393.01.T01:CDS
AGAAAGATCTTCCTCCCTCT+AGG 0.503118 4:+40440805 MsG0480020393.01.T01:CDS
TTATATGGGGAACAAAGAAA+TGG 0.503522 4:+40438535 MsG0480020393.01.T01:exon
GTCACAAATATATCCACTGC+TGG 0.509996 4:-40437081 None:intergenic
TCATAGTCAAATACCTTTGG+AGG 0.510499 4:-40435972 None:intergenic
AACAAAGAAATGGCTGAAGA+TGG 0.511376 4:+40438545 MsG0480020393.01.T01:CDS
CAAACTCTCTTCAGCAAGCT+GGG 0.511704 4:-40437591 None:intergenic
TGGAAATTATGAGTGTGGTT+TGG 0.513593 4:+40440965 MsG0480020393.01.T01:CDS
TTAAATGGAAATTATGAGTG+TGG 0.516644 4:+40440960 MsG0480020393.01.T01:CDS
GTGTTTATTGTGATGATTGG+TGG 0.517309 4:-40437126 None:intergenic
TTTGAGAGGACTATTTGAAA+CGG 0.519798 4:+40441034 MsG0480020393.01.T01:CDS
CTTGTTGGAATTTAGGTGGG+TGG 0.520736 4:+40439636 MsG0480020393.01.T01:CDS
GATGGTGAAAATCCAAGATA+AGG 0.523281 4:-40435902 None:intergenic
ACAAGAATGGTTACAGATGA+AGG 0.525648 4:+40437367 MsG0480020393.01.T01:five_prime_UTR
TGATGTTAACAAAGCTGTTG+AGG 0.535514 4:+40439404 MsG0480020393.01.T01:CDS
TACCAACACATTCATGGCAC+CGG 0.536261 4:-40438630 None:intergenic
GAAAGATCTTCCTCCCTCTA+GGG 0.544091 4:+40440806 MsG0480020393.01.T01:CDS
CCAATTGCAAAACAATAAGA+TGG 0.545093 4:-40440896 None:intergenic
TGATCTTGTTGGAATTTAGG+TGG 0.545259 4:+40439632 MsG0480020393.01.T01:CDS
GATCTTGTTGGAATTTAGGT+GGG 0.547769 4:+40439633 MsG0480020393.01.T01:CDS
AAGCATGGTGGAACAATCAA+AGG 0.548964 4:+40440685 MsG0480020393.01.T01:CDS
TTATGGCTGGATGATTTGTC+CGG 0.551612 4:-40437633 None:intergenic
AACAATAAGATGGTAGTCCT+GGG 0.552353 4:-40440886 None:intergenic
GTATGGCTCAACATAAGAGA+TGG 0.552428 4:+40439785 MsG0480020393.01.T01:CDS
TTGCTTTGAGTTGCGAAACA+TGG 0.553598 4:+40435875 MsG0480020393.01.T01:five_prime_UTR
CAACATAAGAGATGGGCCAC+AGG 0.555868 4:+40439793 MsG0480020393.01.T01:CDS
TGGTACAAACACTTACAAAA+GGG 0.556139 4:+40435767 MsG0480020393.01.T01:five_prime_UTR
TCTATGAATGCTGGATTCTG+TGG 0.557758 4:+40440723 MsG0480020393.01.T01:CDS
TATGGATATGAATACGGCAC+TGG 0.557824 4:+40439447 MsG0480020393.01.T01:CDS
TTATGTTGAGCCATACAGGT+GGG 0.559671 4:-40439778 None:intergenic
ACCAAGAATTCAGACAAGAA+TGG 0.561970 4:+40437354 MsG0480020393.01.T01:five_prime_UTR
CAACCACATCATTTCAAAGC+CGG 0.562761 4:+40438611 MsG0480020393.01.T01:CDS
ACTCTTGAAATTGTATCTAC+CGG 0.565172 4:-40440849 None:intergenic
TGAATTTATAAGGTTATATG+GGG 0.566012 4:+40438522 MsG0480020393.01.T01:intron
AAATCATCCAGCCATAATCA+AGG 0.569735 4:+40437639 MsG0480020393.01.T01:five_prime_UTR
CCAGAACCAATAGCCTTCAC+AGG 0.576406 4:+40439736 MsG0480020393.01.T01:CDS
ACCTTTGGAGGAGACGGTCA+GGG 0.577615 4:-40435960 None:intergenic
TCAAATACCTTTGGAGGAGA+CGG 0.578586 4:-40435966 None:intergenic
TCTACATATCCAGAGAAAAG+AGG 0.579233 4:+40438582 MsG0480020393.01.T01:CDS
AATTGGAGCACAACCTGTGA+AGG 0.582766 4:-40439749 None:intergenic
TTGGAGGAGACGGTCAGGGT+TGG 0.591314 4:-40435956 None:intergenic
ACCCTGACCGTCTCCTCCAA+AGG 0.592049 4:+40435959 MsG0480020393.01.T01:five_prime_UTR
TAACAAGCTAGCTTGTGAGA+TGG 0.592884 4:-40437177 None:intergenic
TATGGCTCAACATAAGAGAT+GGG 0.599447 4:+40439786 MsG0480020393.01.T01:CDS
CCTTTGCATATTGTAGACAA+AGG 0.599656 4:-40441071 None:intergenic
TCTTAGCCGTAAAATAGATG+TGG 0.602585 4:+40437555 MsG0480020393.01.T01:five_prime_UTR
CTGGATATGTAGATCAAATG+TGG 0.604731 4:-40438572 None:intergenic
TGGACTCCATTGAGTGGAGA+TGG 0.606499 4:-40435920 None:intergenic
TGATCACATGATAAGAATGC+CGG 0.607746 4:+40440830 MsG0480020393.01.T01:CDS
TATGTTGAGCCATACAGGTG+GGG 0.616917 4:-40439777 None:intergenic
CCTTTGTCTACAATATGCAA+AGG 0.617973 4:+40441071 MsG0480020393.01.T01:CDS
CAGGACTGTCAATTAAAGCA+TGG 0.631923 4:+40440670 MsG0480020393.01.T01:intron
TGTGCAAGAACTTCCAGCAG+TGG 0.635221 4:+40437068 MsG0480020393.01.T01:five_prime_UTR
ATCATGTGATCATCCCTAGA+GGG 0.640864 4:-40440819 None:intergenic
GCACCGGCTTTGAAATGATG+TGG 0.643336 4:-40438614 None:intergenic
AAAGGCTGGACTCCATTGAG+TGG 0.643881 4:-40435926 None:intergenic
AACCAAGCAACAACAAAAGG+AGG 0.647360 4:-40435812 None:intergenic
CTTATGTTGAGCCATACAGG+TGG 0.652213 4:-40439779 None:intergenic
CAACTCAAAGCAATAAACCA+AGG 0.655551 4:-40435865 None:intergenic
AGTGTAGCATAGAATTGTTG+GGG 0.662671 4:-40438888 None:intergenic
TGACAGAAGATATACTAACT+GGG 0.667224 4:+40439672 MsG0480020393.01.T01:CDS
AGCCGGTGCCATGAATGTGT+TGG 0.669526 4:+40438628 MsG0480020393.01.T01:CDS
ATGTGATCATCCCTAGAGGG+AGG 0.673153 4:-40440816 None:intergenic
GACTGTCAATTAAAGCATGG+TGG 0.673791 4:+40440673 MsG0480020393.01.T01:CDS
GAGTGGAAGAGAGTTTGGGT+TGG 0.681543 4:-40435732 None:intergenic
GAAGATCTCAAGCATTCCTG+TGG 0.685486 4:-40439809 None:intergenic
GGTGCGACTTGCAGATGTAG+CGG 0.687747 4:+40439555 MsG0480020393.01.T01:intron
TATCATGTGATCATCCCTAG+AGG 0.691537 4:-40440820 None:intergenic
GTAGTTGTTCACATACAACA+CGG 0.800666 4:-40435836 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTTTATTTTATTTTT+AGG - Chr4:40436935-40436954 None:intergenic 0.0%
!! ACAAATTCAATAATAATAAA+AGG - Chr4:40440426-40440445 None:intergenic 10.0%
!! ATATGTTACTAATTTAATTA+GGG + Chr4:40439214-40439233 MsG0480020393.01.T01:intron 10.0%
!! TATATGTTACTAATTTAATT+AGG + Chr4:40439213-40439232 MsG0480020393.01.T01:intron 10.0%
!!! GTTTTATTTTTTTATAAGAA+AGG + Chr4:40437400-40437419 MsG0480020393.01.T01:intron 10.0%
!!! TTTAAAAATCACAATTTTTT+GGG + Chr4:40436675-40436694 MsG0480020393.01.T01:intron 10.0%
!!! TTTTAATTTATATTAGTGAT+CGG + Chr4:40436207-40436226 MsG0480020393.01.T01:intron 10.0%
!!! TTTTATTATTATTGAATTTG+TGG + Chr4:40440425-40440444 MsG0480020393.01.T01:intron 10.0%
!!! TTTTTTTTTTAAGGAAAAAT+TGG - Chr4:40437877-40437896 None:intergenic 10.0%
!! AATTATAGAATTATAACTGT+GGG + Chr4:40436631-40436650 MsG0480020393.01.T01:intron 15.0%
!! AATTTATGTTTATTGAAAAG+CGG + Chr4:40436123-40436142 MsG0480020393.01.T01:intron 15.0%
!! ATACAAATTGAAAATATGTT+AGG - Chr4:40438690-40438709 None:intergenic 15.0%
!! ATGAAAATAATAAATGCAAT+GGG + Chr4:40440352-40440371 MsG0480020393.01.T01:intron 15.0%
!! ATGAATTTATAAGGTTATAT+GGG + Chr4:40438521-40438540 MsG0480020393.01.T01:intron 15.0%
!! ATTCAAATTTCATAATAGTT+TGG - Chr4:40436774-40436793 None:intergenic 15.0%
!! TACAAATTGAAAATATGTTA+GGG - Chr4:40438689-40438708 None:intergenic 15.0%
!! TATGAAAATAATAAATGCAA+TGG + Chr4:40440351-40440370 MsG0480020393.01.T01:intron 15.0%
!! TGATAAATTAATTGTTATGA+AGG - Chr4:40436022-40436041 None:intergenic 15.0%
!! TTCATAGAAAAAGTTATTTA+TGG + Chr4:40439155-40439174 MsG0480020393.01.T01:intron 15.0%
!!! AAAAGATATTTTAAAACGAA+GGG - Chr4:40437938-40437957 None:intergenic 15.0%
!!! AATTATGTTTCATCTAAAAT+AGG - Chr4:40436454-40436473 None:intergenic 15.0%
!!! ATTCGCTTTTTTTTTTTTTA+AGG - Chr4:40437886-40437905 None:intergenic 15.0%
!!! ATTGCATTTATTATTTTCAT+AGG - Chr4:40440352-40440371 None:intergenic 15.0%
!!! GTTTAAAAATCACAATTTTT+TGG + Chr4:40436674-40436693 MsG0480020393.01.T01:intron 15.0%
!!! TAAAAGATATTTTAAAACGA+AGG - Chr4:40437939-40437958 None:intergenic 15.0%
!!! TAATTTATTTCTTAGAAGTT+TGG + Chr4:40436058-40436077 MsG0480020393.01.T01:intron 15.0%
!!! TATTTTTAAATTCGAGTTTA+TGG + Chr4:40436482-40436501 MsG0480020393.01.T01:intron 15.0%
!!! TTTTCAAATATTTACTCAAA+TGG + Chr4:40436294-40436313 MsG0480020393.01.T01:intron 15.0%
!!! TTTTCTGTTATAATAGTTAT+CGG - Chr4:40436096-40436115 None:intergenic 15.0%
!! AAAAAAAACAAAACTATCAC+AGG + Chr4:40439600-40439619 MsG0480020393.01.T01:CDS 20.0%
!! AAAAGAAAGTTTACCAAAAA+CGG - Chr4:40439863-40439882 None:intergenic 20.0%
!! ACATTGTATAATATATGCAA+AGG + Chr4:40438222-40438241 MsG0480020393.01.T01:intron 20.0%
!! ATAATATTGATCAGATACAT+CGG + Chr4:40436159-40436178 MsG0480020393.01.T01:intron 20.0%
!! ATATACTCTATACGAATATT+TGG + Chr4:40440644-40440663 MsG0480020393.01.T01:intron 20.0%
!! CATGAATTTATAAGGTTATA+TGG + Chr4:40438520-40438539 MsG0480020393.01.T01:intron 20.0%
!! GAATCAAATATTCATGAATT+CGG - Chr4:40437837-40437856 None:intergenic 20.0%
!! GAATTATAGAATTATAACTG+TGG + Chr4:40436630-40436649 MsG0480020393.01.T01:intron 20.0%
!! TAATTTCCATTTAAACTTTG+TGG - Chr4:40440954-40440973 None:intergenic 20.0%
!! TGAATTTATAAGGTTATATG+GGG + Chr4:40438522-40438541 MsG0480020393.01.T01:intron 20.0%
!! TGTATTTGATCATATGTTAT+TGG + Chr4:40441006-40441025 MsG0480020393.01.T01:CDS 20.0%
!! TTCAAAATTTGCAAAACATT+GGG + Chr4:40437251-40437270 MsG0480020393.01.T01:five_prime_UTR 20.0%
!!! GGTCAAAAATCATAATTTTT+GGG - Chr4:40436561-40436580 None:intergenic 20.0%
!!! TTTCATGATGAATGTTTTTT+TGG - Chr4:40438320-40438339 None:intergenic 20.0%
!!! TTTGGTTCTTAATAGTTTTT+AGG - Chr4:40436756-40436775 None:intergenic 20.0%
!!! TTTTGTAATTTGTTCAATAC+AGG + Chr4:40440578-40440597 MsG0480020393.01.T01:intron 20.0%
!!! TTTTTGGTAAACTTTCTTTT+AGG + Chr4:40439863-40439882 MsG0480020393.01.T01:intron 20.0%
! AAAGTACAATGTGCAAATTA+GGG + Chr4:40437286-40437305 MsG0480020393.01.T01:five_prime_UTR 25.0%
! AAATCATAGTCAAATACCTT+TGG - Chr4:40435978-40435997 None:intergenic 25.0%
! AACAAAACAAAACAAAACAC+AGG - Chr4:40439521-40439540 None:intergenic 25.0%
! AATTGATCTTGTTGGAATTT+AGG + Chr4:40439629-40439648 MsG0480020393.01.T01:CDS 25.0%
! AATTTATATTAGTGATCGGA+TGG + Chr4:40436211-40436230 MsG0480020393.01.T01:intron 25.0%
! ACTATGTTTGATTCTTCAAT+AGG - Chr4:40440289-40440308 None:intergenic 25.0%
! AGTGGAGTTAAAACAAAATT+TGG + Chr4:40439312-40439331 MsG0480020393.01.T01:intron 25.0%
! ATTGAATTTGTGGAAAATGT+AGG + Chr4:40440435-40440454 MsG0480020393.01.T01:intron 25.0%
! CTTACATGATGCTAATTAAA+TGG + Chr4:40438070-40438089 MsG0480020393.01.T01:intron 25.0%
! CTTCAAAATTTGCAAAACAT+TGG + Chr4:40437250-40437269 MsG0480020393.01.T01:five_prime_UTR 25.0%
! TCAATATTGGTGAACAAAAT+TGG - Chr4:40437909-40437928 None:intergenic 25.0%
! TGCATTATTATTAGTATCAC+TGG - Chr4:40437443-40437462 None:intergenic 25.0%
! TTAAATGGAAATTATGAGTG+TGG + Chr4:40440960-40440979 MsG0480020393.01.T01:CDS 25.0%
! TTCCACTCTATGAAAAATAT+TGG + Chr4:40435747-40435766 MsG0480020393.01.T01:five_prime_UTR 25.0%
! TTGAATTTGTGGAAAATGTA+GGG + Chr4:40440436-40440455 MsG0480020393.01.T01:intron 25.0%
!! AAAAGTACAATGTGCAAATT+AGG + Chr4:40437285-40437304 MsG0480020393.01.T01:five_prime_UTR 25.0%
!! AATTTGTTCAATACAGGATT+GGG + Chr4:40440584-40440603 MsG0480020393.01.T01:intron 25.0%
!! ATGTAGCGGTTAATAAATTT+TGG + Chr4:40439569-40439588 MsG0480020393.01.T01:CDS 25.0%
!! CACATTGTACTTTTACAAAA+TGG - Chr4:40437279-40437298 None:intergenic 25.0%
!! GCAATATTTATCAAGTTGTT+TGG + Chr4:40440921-40440940 MsG0480020393.01.T01:CDS 25.0%
!! GGGTCAAAAATCATAATTTT+TGG - Chr4:40436562-40436581 None:intergenic 25.0%
!! TACCAATATTTTTCATAGAG+TGG - Chr4:40435752-40435771 None:intergenic 25.0%
!! TATGTTTCATCTAAAATAGG+AGG - Chr4:40436451-40436470 None:intergenic 25.0%
!! TATTTGAAACGGGTAAATTT+GGG + Chr4:40441045-40441064 MsG0480020393.01.T01:CDS 25.0%
!! TCAAATGGCAATTTTGTATA+AGG + Chr4:40438931-40438950 MsG0480020393.01.T01:CDS 25.0%
!! TGAAAATATGTTAGGGTTTT+TGG - Chr4:40438682-40438701 None:intergenic 25.0%
!! TGATTTTTAAACCCTAAAGT+GGG - Chr4:40436666-40436685 None:intergenic 25.0%
!! TTTCTTTTGACAGGTAATTA+AGG - Chr4:40438470-40438489 None:intergenic 25.0%
!! TTTTTGTATGTCTAAGTAGA+AGG + Chr4:40441111-40441130 MsG0480020393.01.T01:CDS 25.0%
!!! AATAATATTGCTTTTAGCGA+AGG - Chr4:40440035-40440054 None:intergenic 25.0%
!!! ATCATAACATGACTCTTTTT+TGG + Chr4:40439244-40439263 MsG0480020393.01.T01:intron 25.0%
!!! CATTTTAAGGAGAATAAGTT+GGG - Chr4:40438269-40438288 None:intergenic 25.0%
!!! GTTATTTTCACTTTTCAATG+TGG - Chr4:40438120-40438139 None:intergenic 25.0%
!!! TAATTTGTTCAATACAGGAT+TGG + Chr4:40440583-40440602 MsG0480020393.01.T01:intron 25.0%
!!! TCATCACAAAAGTATCTAAA+TGG - Chr4:40437314-40437333 None:intergenic 25.0%
AAGGCATGCATAACAATATT+TGG - Chr4:40438817-40438836 None:intergenic 30.0%
ACAAACATAATTGATGAGTG+TGG + Chr4:40436832-40436851 MsG0480020393.01.T01:intron 30.0%
ACAGTGTTTATTGTGATGAT+TGG - Chr4:40437132-40437151 None:intergenic 30.0%
ACTCTTGAAATTGTATCTAC+CGG - Chr4:40440852-40440871 None:intergenic 30.0%
ACTGTTCTACTCAAATTGTT+AGG + Chr4:40440753-40440772 MsG0480020393.01.T01:CDS 30.0%
AGAATAACATCTATGAATGC+TGG + Chr4:40440714-40440733 MsG0480020393.01.T01:CDS 30.0%
AGAATTTACCAACACATTCA+TGG - Chr4:40438639-40438658 None:intergenic 30.0%
AGCAAAAATGTGAGAAATTG+AGG - Chr4:40436510-40436529 None:intergenic 30.0%
AGGAAACAACTTATCTAAAG+TGG + Chr4:40439294-40439313 MsG0480020393.01.T01:intron 30.0%
ATATTTCCTACTGCAATAGT+TGG + Chr4:40440611-40440630 MsG0480020393.01.T01:intron 30.0%
ATCAATATCACTAGCTGAAT+AGG - Chr4:40439388-40439407 None:intergenic 30.0%
ATGACAGAAGATATACTAAC+TGG + Chr4:40439671-40439690 MsG0480020393.01.T01:CDS 30.0%
ATTTGTTCAATACAGGATTG+GGG + Chr4:40440585-40440604 MsG0480020393.01.T01:intron 30.0%
CAACATTGTTTGAGAGTTTA+GGG - Chr4:40439273-40439292 None:intergenic 30.0%
CCAACTTATTCTCCTTAAAA+TGG + Chr4:40438267-40438286 MsG0480020393.01.T01:intron 30.0%
CCAATTGCAAAACAATAAGA+TGG - Chr4:40440899-40440918 None:intergenic 30.0%
CTGTTATAATAGTTATCGGA+GGG - Chr4:40436092-40436111 None:intergenic 30.0%
GATTACTTGCAAAATAACAC+TGG + Chr4:40438387-40438406 MsG0480020393.01.T01:intron 30.0%
GCAAAAATGTGAGAAATTGA+GGG - Chr4:40436509-40436528 None:intergenic 30.0%
GCTCACTTCATGAATTTATA+AGG + Chr4:40438512-40438531 MsG0480020393.01.T01:intron 30.0%
GCTTCTTATGGATATGAATA+CGG + Chr4:40439441-40439460 MsG0480020393.01.T01:CDS 30.0%
GGAAATTGAATTGATCTTGT+TGG + Chr4:40439621-40439640 MsG0480020393.01.T01:CDS 30.0%
TAATGTAAACTACAGTACCT+TGG + Chr4:40439082-40439101 MsG0480020393.01.T01:intron 30.0%
TACAATGCATAACATATGCA+AGG + Chr4:40436354-40436373 MsG0480020393.01.T01:intron 30.0%
TAGAGCAAAAATACCACTTT+GGG - Chr4:40436584-40436603 None:intergenic 30.0%
TAGTGTTCATGTATGTATGT+CGG + Chr4:40440221-40440240 MsG0480020393.01.T01:intron 30.0%
TATCACCTTACTAAGATCAA+TGG + Chr4:40435709-40435728 MsG0480020393.01.T01:five_prime_UTR 30.0%
TATTTCCTACTGCAATAGTT+GGG + Chr4:40440612-40440631 MsG0480020393.01.T01:intron 30.0%
TCAAATAGTCCTCTCAAAAA+TGG - Chr4:40441032-40441051 None:intergenic 30.0%
TCTGTTATAATAGTTATCGG+AGG - Chr4:40436093-40436112 None:intergenic 30.0%
TGCAAGAAATTGAAGTCATT+GGG + Chr4:40436805-40436824 MsG0480020393.01.T01:intron 30.0%
TGGTACAAACACTTACAAAA+GGG + Chr4:40435767-40435786 MsG0480020393.01.T01:five_prime_UTR 30.0%
TTAGAGCAAAAATACCACTT+TGG - Chr4:40436585-40436604 None:intergenic 30.0%
TTATATGGGGAACAAAGAAA+TGG + Chr4:40438535-40438554 MsG0480020393.01.T01:exon 30.0%
TTATATGTGGATCATGAACT+GGG + Chr4:40439897-40439916 MsG0480020393.01.T01:intron 30.0%
TTGCAAGAAATTGAAGTCAT+TGG + Chr4:40436804-40436823 MsG0480020393.01.T01:intron 30.0%
TTGGTACAAACACTTACAAA+AGG + Chr4:40435766-40435785 MsG0480020393.01.T01:five_prime_UTR 30.0%
TTTCAGCCACAAAGTTTAAA+TGG + Chr4:40440945-40440964 MsG0480020393.01.T01:CDS 30.0%
TTTGAGAGGACTATTTGAAA+CGG + Chr4:40441034-40441053 MsG0480020393.01.T01:CDS 30.0%
! AAAAACCGTTTGACATTTTG+TGG - Chr4:40437502-40437521 None:intergenic 30.0%
! AACAAAATTTGGAGCTTCAA+AGG + Chr4:40439323-40439342 MsG0480020393.01.T01:CDS 30.0%
! ACACTTTTAATATGAGGTGT+CGG - Chr4:40440091-40440110 None:intergenic 30.0%
! ATTGCCATTTGATTTCCAAA+AGG - Chr4:40438923-40438942 None:intergenic 30.0%
! CAGTTTTCTCAAATACTAAC+CGG + Chr4:40437614-40437633 MsG0480020393.01.T01:five_prime_UTR 30.0%
! CTATTTGAAACGGGTAAATT+TGG + Chr4:40441044-40441063 MsG0480020393.01.T01:CDS 30.0%
! CTTTTTAACAGTGATAGACA+TGG + Chr4:40437022-40437041 MsG0480020393.01.T01:intron 30.0%
! GCTATATTTTGTTCCCAATT+TGG + Chr4:40436527-40436546 MsG0480020393.01.T01:intron 30.0%
! GCTCAAAATTCTCCATTTTA+AGG - Chr4:40438282-40438301 None:intergenic 30.0%
! GTGATTTTTAAACCCTAAAG+TGG - Chr4:40436667-40436686 None:intergenic 30.0%
! TAGACATGTTTTCTTTTGAC+AGG - Chr4:40438479-40438498 None:intergenic 30.0%
! TCGAACACACTTTTAATATG+AGG - Chr4:40440097-40440116 None:intergenic 30.0%
!! CCATCTTATTGTTTTGCAAT+TGG + Chr4:40440896-40440915 MsG0480020393.01.T01:CDS 30.0%
!! CCATTTTAAGGAGAATAAGT+TGG - Chr4:40438270-40438289 None:intergenic 30.0%
!! TAATTTTGATCGAACGACTA+CGG - Chr4:40437719-40437738 None:intergenic 30.0%
!!! AATTTTTTGGGTCAAAACAC+AGG + Chr4:40436687-40436706 MsG0480020393.01.T01:intron 30.0%
!!! TTTTGTTTTGTTTGCTTGCT+CGG + Chr4:40439534-40439553 MsG0480020393.01.T01:intron 30.0%
AAACAATAAGATGGTAGTCC+TGG - Chr4:40440890-40440909 None:intergenic 35.0%
AAACATGGTTCACCTTATCT+TGG + Chr4:40435890-40435909 MsG0480020393.01.T01:five_prime_UTR 35.0%
AAACCCTAAAGTGGGAATTT+CGG - Chr4:40436658-40436677 None:intergenic 35.0%
AAACTCTCAAACAATGTTGC+AGG + Chr4:40439274-40439293 MsG0480020393.01.T01:intron 35.0%
AAATCATCCAGCCATAATCA+AGG + Chr4:40437639-40437658 MsG0480020393.01.T01:five_prime_UTR 35.0%
AACAAAGAAATGGCTGAAGA+TGG + Chr4:40438545-40438564 MsG0480020393.01.T01:CDS 35.0%
AACAATAAGATGGTAGTCCT+GGG - Chr4:40440889-40440908 None:intergenic 35.0%
ACAAGAATGGTTACAGATGA+AGG + Chr4:40437367-40437386 MsG0480020393.01.T01:five_prime_UTR 35.0%
ACCAAGAATTCAGACAAGAA+TGG + Chr4:40437354-40437373 MsG0480020393.01.T01:five_prime_UTR 35.0%
ACCATTCTTGTCTGAATTCT+TGG - Chr4:40437358-40437377 None:intergenic 35.0%
AGAAAGTTTACCAAAAACGG+CGG - Chr4:40439860-40439879 None:intergenic 35.0%
AGAGCAAAAATACCACTTTG+GGG - Chr4:40436583-40436602 None:intergenic 35.0%
AGTGTAGCATAGAATTGTTG+GGG - Chr4:40438891-40438910 None:intergenic 35.0%
AGTTATTTATGGTCTCTCTC+CGG + Chr4:40439166-40439185 MsG0480020393.01.T01:intron 35.0%
CAACTCAAAGCAATAAACCA+AGG - Chr4:40435868-40435887 None:intergenic 35.0%
CACAAACAGTACCTTGATTA+TGG - Chr4:40437653-40437672 None:intergenic 35.0%
CACATGTTTAAGTGTGATGT+TGG - Chr4:40440131-40440150 None:intergenic 35.0%
CATACATATCCTGTCAACAA+GGG - Chr4:40437531-40437550 None:intergenic 35.0%
CCTTTGCATATTGTAGACAA+AGG - Chr4:40441074-40441093 None:intergenic 35.0%
CCTTTGTCTACAATATGCAA+AGG + Chr4:40441071-40441090 MsG0480020393.01.T01:CDS 35.0%
CTAAGTAGAAGGACAATTTC+TGG + Chr4:40441122-40441141 MsG0480020393.01.T01:CDS 35.0%
CTGGATATGTAGATCAAATG+TGG - Chr4:40438575-40438594 None:intergenic 35.0%
CTTATATGTGGATCATGAAC+TGG + Chr4:40439896-40439915 MsG0480020393.01.T01:intron 35.0%
GAAATCAGTTAGTCATGCTT+TGG + Chr4:40439353-40439372 MsG0480020393.01.T01:CDS 35.0%
GAGTGTAGCATAGAATTGTT+GGG - Chr4:40438892-40438911 None:intergenic 35.0%
GATCTTGTTGGAATTTAGGT+GGG + Chr4:40439633-40439652 MsG0480020393.01.T01:CDS 35.0%
GATGGTGAAAATCCAAGATA+AGG - Chr4:40435905-40435924 None:intergenic 35.0%
GCAACATTGTTTGAGAGTTT+AGG - Chr4:40439274-40439293 None:intergenic 35.0%
GGCAATTCTTAGCTTATATG+TGG + Chr4:40439884-40439903 MsG0480020393.01.T01:intron 35.0%
GTAAAATTGATCTGCAGAGT+TGG - Chr4:40440522-40440541 None:intergenic 35.0%
GTAGTTGTTCACATACAACA+CGG - Chr4:40435839-40435858 None:intergenic 35.0%
GTGTTTATTGTGATGATTGG+TGG - Chr4:40437129-40437148 None:intergenic 35.0%
GTTATTCAGACAAAGTCTCT+GGG + Chr4:40438734-40438753 MsG0480020393.01.T01:intron 35.0%
TAAATCCCAACTATTGCAGT+AGG - Chr4:40440620-40440639 None:intergenic 35.0%
TAACACTTAAAGCCTGTGTT+CGG - Chr4:40436394-40436413 None:intergenic 35.0%
TATATGTGGATCATGAACTG+GGG + Chr4:40439898-40439917 MsG0480020393.01.T01:intron 35.0%
TATGGCTCAACATAAGAGAT+GGG + Chr4:40439786-40439805 MsG0480020393.01.T01:CDS 35.0%
TATTCATGAATTCGGAACGT+TGG - Chr4:40437829-40437848 None:intergenic 35.0%
TCATACATATCCTGTCAACA+AGG - Chr4:40437532-40437551 None:intergenic 35.0%
TCATAGTCAAATACCTTTGG+AGG - Chr4:40435975-40435994 None:intergenic 35.0%
TCTACATATCCAGAGAAAAG+AGG + Chr4:40438582-40438601 MsG0480020393.01.T01:CDS 35.0%
TCTGACCACAAAATGTCAAA+CGG + Chr4:40437494-40437513 MsG0480020393.01.T01:intron 35.0%
TCTTAGCCGTAAAATAGATG+TGG + Chr4:40437555-40437574 MsG0480020393.01.T01:five_prime_UTR 35.0%
TGAACAACTACTCTATTCCT+TGG + Chr4:40435848-40435867 MsG0480020393.01.T01:five_prime_UTR 35.0%
TGAGTGTAGCATAGAATTGT+TGG - Chr4:40438893-40438912 None:intergenic 35.0%
TGATCACATGATAAGAATGC+CGG + Chr4:40440830-40440849 MsG0480020393.01.T01:CDS 35.0%
TGATCTTGTTGGAATTTAGG+TGG + Chr4:40439632-40439651 MsG0480020393.01.T01:CDS 35.0%
TGATGTTAACAAAGCTGTTG+AGG + Chr4:40439404-40439423 MsG0480020393.01.T01:CDS 35.0%
TGCATAACATATGCAAGGTT+CGG + Chr4:40436359-40436378 MsG0480020393.01.T01:intron 35.0%
TGGAAATTATGAGTGTGGTT+TGG + Chr4:40440965-40440984 MsG0480020393.01.T01:CDS 35.0%
TGTCAATTGAGCTAAACTCA+AGG - Chr4:40438199-40438218 None:intergenic 35.0%
TGTTATTCAGACAAAGTCTC+TGG + Chr4:40438733-40438752 MsG0480020393.01.T01:intron 35.0%
TTGAAATGATGTGGTTGCTT+TGG - Chr4:40438608-40438627 None:intergenic 35.0%
TTGGGTGAAAAGACCAAATT+GGG - Chr4:40436543-40436562 None:intergenic 35.0%
TTGTCTGAATTCTTGGTCAT+TGG - Chr4:40437351-40437370 None:intergenic 35.0%
TTTGGGTGAAAAGACCAAAT+TGG - Chr4:40436544-40436563 None:intergenic 35.0%
! CGAAGGGTTTGTTTCAATAT+TGG - Chr4:40437922-40437941 None:intergenic 35.0%
! TGAAGAGCATAGAAGATTAC+AGG - Chr4:40437225-40437244 None:intergenic 35.0%
! TGAGTTTAGCTCAATTGACA+AGG + Chr4:40438199-40438218 MsG0480020393.01.T01:intron 35.0%
! TGCTTTTAGCGAAGGAAAAA+TGG - Chr4:40440027-40440046 None:intergenic 35.0%
! TGGTAATGATGCAATATGCA+AGG - Chr4:40439960-40439979 None:intergenic 35.0%
! TTGAGAGGACTATTTGAAAC+GGG + Chr4:40441035-40441054 MsG0480020393.01.T01:CDS 35.0%
! TTGGGTCCACATCTATTTTA+CGG - Chr4:40437564-40437583 None:intergenic 35.0%
!! CATAATCAAGGTACTGTTTG+TGG + Chr4:40437651-40437670 MsG0480020393.01.T01:intron 35.0%
!! CGATCCTTTTGGAAATCAAA+TGG + Chr4:40438916-40438935 MsG0480020393.01.T01:CDS 35.0%
!! TTAGTCATGCTTTGGAAGAT+AGG + Chr4:40439361-40439380 MsG0480020393.01.T01:CDS 35.0%
!!! TGTTATTGGCCATTTTTGAG+AGG + Chr4:40441020-40441039 MsG0480020393.01.T01:CDS 35.0%
AAAGGTTGTGATTCGACCAT+CGG + Chr4:40438240-40438259 MsG0480020393.01.T01:intron 40.0%
AACACTTAAAGCCTGTGTTC+GGG - Chr4:40436393-40436412 None:intergenic 40.0%
AACAGTACCTTGATTATGGC+TGG - Chr4:40437649-40437668 None:intergenic 40.0%
AACCAAGCAACAACAAAAGG+AGG - Chr4:40435815-40435834 None:intergenic 40.0%
AATTTAGGTGGGTGGATGTA+TGG + Chr4:40439644-40439663 MsG0480020393.01.T01:CDS 40.0%
ACAATCCACGTTCAACATGA+AGG - Chr4:40438776-40438795 None:intergenic 40.0%
ATCATGTGATCATCCCTAGA+GGG - Chr4:40440822-40440841 None:intergenic 40.0%
CAACCACATCATTTCAAAGC+CGG + Chr4:40438611-40438630 MsG0480020393.01.T01:CDS 40.0%
CAATCCACGTTCAACATGAA+GGG - Chr4:40438775-40438794 None:intergenic 40.0%
CAGGACTGTCAATTAAAGCA+TGG + Chr4:40440670-40440689 MsG0480020393.01.T01:intron 40.0%
CATAGAGTGGAAGAGAGTTT+GGG - Chr4:40435739-40435758 None:intergenic 40.0%
CTACTTGCAAAACTTTGCAC+AGG + Chr4:40438412-40438431 MsG0480020393.01.T01:intron 40.0%
CTATACGAATATTTGGCCTC+AGG + Chr4:40440651-40440670 MsG0480020393.01.T01:intron 40.0%
CTGACGATACACAAAAAGGT+TGG + Chr4:40439695-40439714 MsG0480020393.01.T01:CDS 40.0%
GACTGTCAATTAAAGCATGG+TGG + Chr4:40440673-40440692 MsG0480020393.01.T01:CDS 40.0%
GAGCAAAAATACCACTTTGG+GGG - Chr4:40436582-40436601 None:intergenic 40.0%
GCATAACATATGCAAGGTTC+GGG + Chr4:40436360-40436379 MsG0480020393.01.T01:intron 40.0%
GCTATCGAAGTTGCTTCTTA+TGG + Chr4:40439429-40439448 MsG0480020393.01.T01:CDS 40.0%
GGTAACCAAGCAACAACAAA+AGG - Chr4:40435818-40435837 None:intergenic 40.0%
GTATGGCTCAACATAAGAGA+TGG + Chr4:40439785-40439804 MsG0480020393.01.T01:CDS 40.0%
GTCACAAATATATCCACTGC+TGG - Chr4:40437084-40437103 None:intergenic 40.0%
GTTGGCCATTGATCTTAGTA+AGG - Chr4:40435717-40435736 None:intergenic 40.0%
TATCATGTGATCATCCCTAG+AGG - Chr4:40440823-40440842 None:intergenic 40.0%
TATGGATATGAATACGGCAC+TGG + Chr4:40439447-40439466 MsG0480020393.01.T01:CDS 40.0%
TCATAGAGTGGAAGAGAGTT+TGG - Chr4:40435740-40435759 None:intergenic 40.0%
TCTATGAATGCTGGATTCTG+TGG + Chr4:40440723-40440742 MsG0480020393.01.T01:CDS 40.0%
TCTCTTATGTTGAGCCATAC+AGG - Chr4:40439785-40439804 None:intergenic 40.0%
TGCATTGTACCTATCAACTG+AGG - Chr4:40436343-40436362 None:intergenic 40.0%
TGCTTTAATTGACAGTCCTG+AGG - Chr4:40440670-40440689 None:intergenic 40.0%
TTATGTTGAGCCATACAGGT+GGG - Chr4:40439781-40439800 None:intergenic 40.0%
TTTGGGTCAAAACACAGGTT+AGG + Chr4:40436692-40436711 MsG0480020393.01.T01:intron 40.0%
! AAGCATGGTGGAACAATCAA+AGG + Chr4:40440685-40440704 MsG0480020393.01.T01:CDS 40.0%
! AGCAAGCTGGGATAGATTTT+GGG - Chr4:40437582-40437601 None:intergenic 40.0%
! ATGATTTTTGACCCCCAAAG+TGG + Chr4:40436568-40436587 MsG0480020393.01.T01:intron 40.0%
! ATGGAGAATTTTGAGCAGCT+TGG + Chr4:40438286-40438305 MsG0480020393.01.T01:intron 40.0%
! GCTTGTTACGTTTCTGATGA+TGG + Chr4:40437192-40437211 MsG0480020393.01.T01:five_prime_UTR 40.0%
! TAACAAGCTAGCTTGTGAGA+TGG - Chr4:40437180-40437199 None:intergenic 40.0%
! TACACTCAAGACGATCCTTT+TGG + Chr4:40438905-40438924 MsG0480020393.01.T01:CDS 40.0%
! TCAAATACCTTTGGAGGAGA+CGG - Chr4:40435969-40435988 None:intergenic 40.0%
! TTATGGCTGGATGATTTGTC+CGG - Chr4:40437636-40437655 None:intergenic 40.0%
! TTTGTTTCTCCCTTGTTGAC+AGG + Chr4:40437519-40437538 MsG0480020393.01.T01:intron 40.0%
! TTTTCACCATCTCCACTCAA+TGG + Chr4:40435914-40435933 MsG0480020393.01.T01:five_prime_UTR 40.0%
!! GTGTTTTTCAATGCTCACCT+TGG - Chr4:40439997-40440016 None:intergenic 40.0%
!! TTGCTTTGAGTTGCGAAACA+TGG + Chr4:40435875-40435894 MsG0480020393.01.T01:five_prime_UTR 40.0%
!!! ATCCTCCTTTTGTTGTTGCT+TGG + Chr4:40435810-40435829 MsG0480020393.01.T01:five_prime_UTR 40.0%
!!! GTCAGGGTTGGTTTTGATAA+AGG - Chr4:40435947-40435966 None:intergenic 40.0%
AAACTACAGTACCTTGGAGC+AGG + Chr4:40439088-40439107 MsG0480020393.01.T01:intron 45.0%
AATTGGAGCACAACCTGTGA+AGG - Chr4:40439752-40439771 None:intergenic 45.0%
ACAGGTTGTGCTCCAATTGA+TGG + Chr4:40439754-40439773 MsG0480020393.01.T01:CDS 45.0%
AGAAAGATCTTCCTCCCTCT+AGG + Chr4:40440805-40440824 MsG0480020393.01.T01:CDS 45.0%
CAAACTCTCTTCAGCAAGCT+GGG - Chr4:40437594-40437613 None:intergenic 45.0%
CCAAAAACGGCGGCAAAAAT+AGG - Chr4:40439850-40439869 None:intergenic 45.0%
CCTTGGCAGGAAATAACAGT+TGG - Chr4:40439980-40439999 None:intergenic 45.0%
CTTATGTTGAGCCATACAGG+TGG - Chr4:40439782-40439801 None:intergenic 45.0%
CTTGTTGGAATTTAGGTGGG+TGG + Chr4:40439636-40439655 MsG0480020393.01.T01:CDS 45.0%
GAAAGATCTTCCTCCCTCTA+GGG + Chr4:40440806-40440825 MsG0480020393.01.T01:CDS 45.0%
GAAGATCTCAAGCATTCCTG+TGG - Chr4:40439812-40439831 None:intergenic 45.0%
GCATAGCATACTTGAGCAAC+TGG - Chr4:40439931-40439950 None:intergenic 45.0%
GGACCGAAATTCCCACTTTA+GGG + Chr4:40436652-40436671 MsG0480020393.01.T01:intron 45.0%
GGACTCCAAGGAATGTTCTA+CGG + Chr4:40439118-40439137 MsG0480020393.01.T01:intron 45.0%
GGAGTCAAGCAAAATGCACA+AGG - Chr4:40438836-40438855 None:intergenic 45.0%
GTGAGCTTACCTCAGTTGAT+AGG + Chr4:40436331-40436350 MsG0480020393.01.T01:intron 45.0%
TACCAACACATTCATGGCAC+CGG - Chr4:40438633-40438652 None:intergenic 45.0%
TATGTTGAGCCATACAGGTG+GGG - Chr4:40439780-40439799 None:intergenic 45.0%
TCTCCGGATGACGTAGAAAA+GGG + Chr4:40439182-40439201 MsG0480020393.01.T01:intron 45.0%
TGGATCATGAACTGGGGATT+TGG + Chr4:40439904-40439923 MsG0480020393.01.T01:intron 45.0%
TTCAAATGCGCGAATGTGTG+TGG - Chr4:40437692-40437711 None:intergenic 45.0%
TTCCTCCGTAGAACATTCCT+TGG - Chr4:40439126-40439145 None:intergenic 45.0%
! AAGCTACTTCTTTTTGCCCC+TGG - Chr4:40438857-40438876 None:intergenic 45.0%
! AGAATAAGTTGGGTGTCCGA+TGG - Chr4:40438259-40438278 None:intergenic 45.0%
! CAGCAAGCTGGGATAGATTT+TGG - Chr4:40437583-40437602 None:intergenic 45.0%
! GTACCCTTTTCTACGTCATC+CGG - Chr4:40439188-40439207 None:intergenic 45.0%
! GTGCATTTTGCTTGACTCCA+GGG + Chr4:40438837-40438856 MsG0480020393.01.T01:intron 45.0%
! GTTCAACATGAAGGGTGCAT+TGG - Chr4:40438767-40438786 None:intergenic 45.0%
! TGCATTTTGCTTGACTCCAG+GGG + Chr4:40438838-40438857 MsG0480020393.01.T01:intron 45.0%
! TGTGCATTTTGCTTGACTCC+AGG + Chr4:40438836-40438855 MsG0480020393.01.T01:intron 45.0%
! TTGCTTTGGCCTCTTTTCTC+TGG - Chr4:40438594-40438613 None:intergenic 45.0%
! TTTTCAATGCTCACCTTGGC+AGG - Chr4:40439993-40440012 None:intergenic 45.0%
!! ATATGAATACGGCACTGGCT+GGG + Chr4:40439452-40439471 MsG0480020393.01.T01:CDS 45.0%
!! CCAACTGTTATTTCCTGCCA+AGG + Chr4:40439977-40439996 MsG0480020393.01.T01:intron 45.0%
!! TCAAGGTACTGTTTGTGGTC+CGG + Chr4:40437656-40437675 MsG0480020393.01.T01:intron 45.0%
!!! AGTCGTTAGTTTTCTTGCCC+AGG + Chr4:40440869-40440888 MsG0480020393.01.T01:CDS 45.0%
!!! CCTATTTTTGCCGCCGTTTT+TGG + Chr4:40439847-40439866 MsG0480020393.01.T01:CDS 45.0%
!!! GGGTTGGTTTTGATAAAGGC+TGG - Chr4:40435943-40435962 None:intergenic 45.0%
!! TAAGAAATAAATTATTAATT+AGG - Chr4:40436052-40436071 None:intergenic 5.0%
AAAGGCTGGACTCCATTGAG+TGG - Chr4:40435929-40435948 None:intergenic 50.0%
ATACAGGTGGGGCCATCAAT+TGG - Chr4:40439769-40439788 None:intergenic 50.0%
ATGTGATCATCCCTAGAGGG+AGG - Chr4:40440819-40440838 None:intergenic 50.0%
CAACATAAGAGATGGGCCAC+AGG + Chr4:40439793-40439812 MsG0480020393.01.T01:CDS 50.0%
CCAGAACCAATAGCCTTCAC+AGG + Chr4:40439736-40439755 MsG0480020393.01.T01:CDS 50.0%
CTCCAAGGAATGTTCTACGG+AGG + Chr4:40439121-40439140 MsG0480020393.01.T01:intron 50.0%
CTCTCCGGATGACGTAGAAA+AGG + Chr4:40439181-40439200 MsG0480020393.01.T01:intron 50.0%
GAGTGGAAGAGAGTTTGGGT+TGG - Chr4:40435735-40435754 None:intergenic 50.0%
GCAAACTCTCTTCAGCAAGC+TGG - Chr4:40437595-40437614 None:intergenic 50.0%
GCACAACCTGTGAAGGCTAT+TGG - Chr4:40439745-40439764 None:intergenic 50.0%
GGGACCGAAATTCCCACTTT+AGG + Chr4:40436651-40436670 MsG0480020393.01.T01:intron 50.0%
TGCACCCTTCATGTTGAACG+TGG + Chr4:40438768-40438787 MsG0480020393.01.T01:intron 50.0%
TGGACTCCATTGAGTGGAGA+TGG - Chr4:40435923-40435942 None:intergenic 50.0%
TGTGCAAGAACTTCCAGCAG+TGG + Chr4:40437068-40437087 MsG0480020393.01.T01:five_prime_UTR 50.0%
TGTGTGTGGTTCCTAACAGC+CGG - Chr4:40437678-40437697 None:intergenic 50.0%
! AATTGATGGCCCCACCTGTA+TGG + Chr4:40439768-40439787 MsG0480020393.01.T01:CDS 50.0%
! TACCTTGGAGCAGGATTAGC+AGG + Chr4:40439097-40439116 MsG0480020393.01.T01:intron 50.0%
!! CCTGTGAAGGCTATTGGTTC+TGG - Chr4:40439739-40439758 None:intergenic 50.0%
!! GATATGAATACGGCACTGGC+TGG + Chr4:40439451-40439470 MsG0480020393.01.T01:CDS 50.0%
!! GCACCGGCTTTGAAATGATG+TGG - Chr4:40438617-40438636 None:intergenic 50.0%
!! TATGAATACGGCACTGGCTG+GGG + Chr4:40439453-40439472 MsG0480020393.01.T01:CDS 50.0%
CTGTTTGTGGTCCGGCTGTT+AGG + Chr4:40437664-40437683 MsG0480020393.01.T01:intron 55.0%
GGTGCGACTTGCAGATGTAG+CGG + Chr4:40439555-40439574 MsG0480020393.01.T01:intron 55.0%
GTCCTGCTAATCCTGCTCCA+AGG - Chr4:40439102-40439121 None:intergenic 55.0%
! ACCTTTGGAGGAGACGGTCA+GGG - Chr4:40435963-40435982 None:intergenic 55.0%
! GCAGGATTAGCAGGACTCCA+AGG + Chr4:40439106-40439125 MsG0480020393.01.T01:intron 55.0%
! TACCTTTGGAGGAGACGGTC+AGG - Chr4:40435964-40435983 None:intergenic 55.0%
!! AGCCGGTGCCATGAATGTGT+TGG + Chr4:40438628-40438647 MsG0480020393.01.T01:CDS 55.0%
ACCCTGACCGTCTCCTCCAA+AGG + Chr4:40435959-40435978 MsG0480020393.01.T01:five_prime_UTR 60.0%
CGGGATTCGAACCCGAACAC+AGG + Chr4:40436379-40436398 MsG0480020393.01.T01:intron 60.0%
TTGGAGGAGACGGTCAGGGT+TGG - Chr4:40435959-40435978 None:intergenic 60.0%
!! CGGCACTGGCTGGGGTAAAC+AGG + Chr4:40439461-40439480 MsG0480020393.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 40435695 40441148 40435695 ID=MsG0480020393.01;Name=MsG0480020393.01
Chr4 mRNA 40435695 40441148 40435695 ID=MsG0480020393.01.T01;Parent=MsG0480020393.01;Name=MsG0480020393.01.T01;_AED=0.33;_eAED=0.36;_QI=732|0.42|0.5|1|0.42|0.37|8|0|380
Chr4 exon 40435695 40435980 40435695 ID=MsG0480020393.01.T01:exon:4173;Parent=MsG0480020393.01.T01
Chr4 exon 40437068 40437388 40437068 ID=MsG0480020393.01.T01:exon:4174;Parent=MsG0480020393.01.T01
Chr4 exon 40437541 40437660 40437541 ID=MsG0480020393.01.T01:exon:4175;Parent=MsG0480020393.01.T01
Chr4 exon 40438534 40438649 40438534 ID=MsG0480020393.01.T01:exon:4176;Parent=MsG0480020393.01.T01
Chr4 exon 40438858 40438952 40438858 ID=MsG0480020393.01.T01:exon:4177;Parent=MsG0480020393.01.T01
Chr4 exon 40439314 40439474 40439314 ID=MsG0480020393.01.T01:exon:4178;Parent=MsG0480020393.01.T01
Chr4 exon 40439569 40439868 40439569 ID=MsG0480020393.01.T01:exon:4179;Parent=MsG0480020393.01.T01
Chr4 exon 40440673 40441148 40440673 ID=MsG0480020393.01.T01:exon:4180;Parent=MsG0480020393.01.T01
Chr4 five_prime_UTR 40435695 40435980 40435695 ID=MsG0480020393.01.T01:five_prime_utr;Parent=MsG0480020393.01.T01
Chr4 five_prime_UTR 40437068 40437388 40437068 ID=MsG0480020393.01.T01:five_prime_utr;Parent=MsG0480020393.01.T01
Chr4 five_prime_UTR 40437541 40437660 40437541 ID=MsG0480020393.01.T01:five_prime_utr;Parent=MsG0480020393.01.T01
Chr4 five_prime_UTR 40438534 40438538 40438534 ID=MsG0480020393.01.T01:five_prime_utr;Parent=MsG0480020393.01.T01
Chr4 CDS 40438539 40438649 40438539 ID=MsG0480020393.01.T01:cds;Parent=MsG0480020393.01.T01
Chr4 CDS 40438858 40438952 40438858 ID=MsG0480020393.01.T01:cds;Parent=MsG0480020393.01.T01
Chr4 CDS 40439314 40439474 40439314 ID=MsG0480020393.01.T01:cds;Parent=MsG0480020393.01.T01
Chr4 CDS 40439569 40439868 40439569 ID=MsG0480020393.01.T01:cds;Parent=MsG0480020393.01.T01
Chr4 CDS 40440673 40441148 40440673 ID=MsG0480020393.01.T01:cds;Parent=MsG0480020393.01.T01
Gene Sequence

>MsG0480020393.01.T01

ATGGGGAACAAAGAAATGGCTGAAGATGGATTGCCACATTTGATCTACATATCCAGAGAAAAGAGGCCAAAGCAACCACATCATTTCAAAGCCGGTGCCATGAATGTGTTGGGGCAAAAAGAAGTAGCTTTTGCTCAATGTCCCCAACAATTCTATGCTACACTCAAGACGATCCTTTTGGAAATCAAATGGCAATTTTGTATAAGTGGAGTTAAAACAAAATTTGGAGCTTCAAAGGAACTTATGAAATCAGTTAGTCATGCTTTGGAAGATAGGACCTATTCAGCTAGTGATATTGATGTTAACAAAGCTGTTGAGGAAGCTATCGAAGTTGCTTCTTATGGATATGAATACGGCACTGGCTGGGATGTAGCGGTTAATAAATTTTGGTTGTTTAAAAAAAAAACAAAACTATCACAGGAAATTGAATTGATCTTGTTGGAATTTAGGTGGGTGGATGTATGGAACAATGACAGAAGATATACTAACTGGGCTGACGATACACAAAAAGGTTGGAGATCAGAATTATGTACACCAGAACCAATAGCCTTCACAGGTTGTGCTCCAATTGATGGCCCCACCTGTATGGCTCAACATAAGAGATGGGCCACAGGAATGCTTGAGATCTTCTTTAGCAAACATTGTCCTATTTTTGCCGCCGTTTTTGGACTGTCAATTAAAGCATGGTGGAACAATCAAAGGATGTCGAGAATAACATCTATGAATGCTGGATTCTGTGGATTTATTACTGTTCTACTCAAATTGTTAGGAATATCTAACACTGTTTTTGACATAACAAAGAAAGATCTTCCTCCCTCTAGGGATGATCACATGATAAGAATGCCGGTAGATACAATTTCAAGAGTCGTTAGTTTTCTTGCCCAGGACTACCATCTTATTGTTTTGCAATTGGCAGCAATATTTATCAAGTTGTTTGGATTTCAGCCACAAAGTTTAAATGGAAATTATGAGTGTGGTTTGGCTGAAATGTTGATTAGTGTGTATTTGATCATATGTTATTGGCCATTTTTGAGAGGACTATTTGAAACGGGTAAATTTGGGATTCCTTTGTCTACAATATGCAAAGGAGCAACTTTGACATGTATTTTTGTATGTCTAAGTAGAAGGACAATTTCTGGTTGA

Protein sequence

>MsG0480020393.01.T01

MGNKEMAEDGLPHLIYISREKRPKQPHHFKAGAMNVLGQKEVAFAQCPQQFYATLKTILLEIKWQFCISGVKTKFGASKELMKSVSHALEDRTYSASDIDVNKAVEEAIEVASYGYEYGTGWDVAVNKFWLFKKKTKLSQEIELILLEFRWVDVWNNDRRYTNWADDTQKGWRSELCTPEPIAFTGCAPIDGPTCMAQHKRWATGMLEIFFSKHCPIFAAVFGLSIKAWWNNQRMSRITSMNAGFCGFITVLLKLLGISNTVFDITKKDLPPSRDDHMIRMPVDTISRVVSFLAQDYHLIVLQLAAIFIKLFGFQPQSLNGNYECGLAEMLISVYLIICYWPFLRGLFETGKFGIPLSTICKGATLTCIFVCLSRRTISG*