AlfalfaGEDB | MsG0580030182.01

M. sativa cultivar ZhongmuNo.1 / MsG0580030182.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047814.01	MsG0580030182.01	0.848373	6.388266e-60	1.169901e-56
MsG0180000001.01	MsG0580030182.01	0.842272	2.861830e-58	4.316492e-55
MsG0180001237.01	MsG0580030182.01	0.826143	3.189020e-54	2.965705e-51
MsG0180001294.01	MsG0580030182.01	0.828137	1.062745e-54	1.047121e-51
MsG0180004388.01	MsG0580030182.01	0.802898	4.508495e-49	2.234573e-46
MsG0180004991.01	MsG0580030182.01	0.831337	1.767627e-55	1.912413e-52
MsG0180005125.01	MsG0580030182.01	0.832288	1.029806e-55	1.145774e-52
MsG0180005664.01	MsG0580030182.01	0.825829	3.785903e-54	3.489547e-51
MsG0180006235.01	MsG0580030182.01	0.832341	9.992169e-56	1.113504e-52
MsG0380012124.01	MsG0580030182.01	0.801019	1.097098e-48	5.184545e-46
MsG0380012471.01	MsG0580030182.01	0.804618	1.981712e-49	1.026504e-46
MsG0480018641.01	MsG0580030182.01	0.809816	1.569457e-50	9.307688e-48
MsG0480020791.01	MsG0580030182.01	0.801136	1.038240e-48	4.920846e-46
MsG0480021225.01	MsG0580030182.01	0.814938	1.193613e-51	8.117586e-49
MsG0480021772.01	MsG0580030182.01	0.814545	1.458737e-51	9.816568e-49
MsG0480021812.01	MsG0580030182.01	0.849195	3.779336e-60	7.109818e-57
MsG0480022167.01	MsG0580030182.01	0.818817	1.607809e-52	1.216138e-49
MsG0480022480.01	MsG0580030182.01	0.820450	6.815011e-53	5.394410e-50
MsG0480022620.01	MsG0580030182.01	0.805047	1.612212e-49	8.444142e-47
MsG0480022717.01	MsG0580030182.01	0.828129	1.067209e-54	1.051290e-51
MsG0480023013.01	MsG0580030182.01	0.827549	1.471003e-54	1.424659e-51
MsG0480023245.01	MsG0580030182.01	0.808386	3.176457e-50	1.813850e-47
MsG0480023361.01	MsG0580030182.01	0.808710	2.709175e-50	1.559998e-47
MsG0480023500.01	MsG0580030182.01	0.829292	5.584777e-55	5.692651e-52
MsG0580024618.01	MsG0580030182.01	0.832893	7.288862e-56	8.258188e-53
MsG0580025072.01	MsG0580030182.01	0.823512	1.331020e-53	1.148455e-50
MsG0580025134.01	MsG0580030182.01	0.800119	1.673289e-48	7.728456e-46
MsG0580025989.01	MsG0580030182.01	0.810262	1.258110e-50	7.548550e-48
MsG0380015793.01	MsG0580030182.01	-0.830501	2.834897e-55	2.992061e-52
MsG0380015831.01	MsG0580030182.01	0.817807	2.723269e-52	2.003425e-49
MsG0380016389.01	MsG0580030182.01	0.837331	5.535355e-57	7.166500e-54
MsG0380016483.01	MsG0580030182.01	0.805278	1.442187e-49	7.598298e-47
MsG0380016985.01	MsG0580030182.01	0.817733	2.829567e-52	2.077435e-49
MsG0380017431.01	MsG0580030182.01	0.817452	3.272989e-52	2.384631e-49
MsG0380017998.01	MsG0580030182.01	0.825410	4.759761e-54	4.334860e-51
MsG0580027413.01	MsG0580030182.01	0.809441	1.889466e-50	1.109451e-47
MsG0580027441.01	MsG0580030182.01	0.819043	1.428677e-52	1.087500e-49
MsG0580028060.01	MsG0580030182.01	0.820311	7.334741e-53	5.783143e-50
MsG0580028185.01	MsG0580030182.01	0.810140	1.336354e-50	7.992503e-48
MsG0580029148.01	MsG0580030182.01	0.858063	1.065324e-62	2.684854e-59
MsG0580029189.01	MsG0580030182.01	0.812451	4.211876e-51	2.679109e-48
MsG0580030160.01	MsG0580030182.01	0.853988	1.659774e-61	3.652569e-58
MsG0580030182.01	MsG0580030235.01	0.834256	3.330098e-56	3.930512e-53
MsG0580030182.01	MsG0680030685.01	0.800566	1.357273e-48	6.340266e-46
MsG0580030182.01	MsG0680031651.01	0.807228	5.600813e-50	3.102599e-47
MsG0580030182.01	MsG0680034061.01	0.813673	2.272299e-51	1.493413e-48
MsG0580030182.01	MsG0780036235.01	0.801411	9.118780e-49	4.351798e-46
MsG0580030182.01	MsG0780038837.01	0.808793	2.600500e-50	1.500716e-47
MsG0580030182.01	MsG0780039137.01	0.808676	2.755667e-50	1.585366e-47
MsG0580030182.01	MsG0780039950.01	0.821955	3.065349e-53	2.530493e-50
MsG0580030182.01	MsG0780040030.01	0.809201	2.127408e-50	1.241242e-47
MsG0580030182.01	MsG0780040861.01	0.814551	1.454530e-51	9.789801e-49
MsG0580030182.01	MsG0780041295.01	0.804568	2.029035e-49	1.049685e-46
MsG0580030182.01	MsG0780041469.01	0.818258	2.152930e-52	1.603489e-49
MsG0580030182.01	MsG0780041490.01	0.801718	7.890310e-49	3.794752e-46
MsG0580030182.01	MsG0780041641.01	0.814841	1.254771e-51	8.511178e-49
MsG0580030182.01	MsG0880042543.01	0.807750	4.339962e-50	2.437000e-47
MsG0580030182.01	MsG0880042552.01	0.808820	2.566130e-50	1.481968e-47
MsG0580030182.01	MsG0880042848.01	0.801307	9.577420e-49	4.558811e-46
MsG0580030182.01	MsG0880044075.01	0.806854	6.720618e-50	3.686992e-47
MsG0580030182.01	MsG0880046113.01	0.810895	9.179731e-51	5.601678e-48
MsG0580030182.01	MsG0880046177.01	0.801379	9.258671e-49	4.415023e-46
MsG0580030182.01	MsG0880046762.01	0.865488	5.695914e-65	1.856379e-61
MsG0580030182.01	MsG0880046933.01	0.859493	3.980645e-63	1.053289e-59
MsG0580030182.01	MsG0880047016.01	0.825607	4.275467e-54	3.915815e-51
MsG0580030182.01	MsG0880047192.01	0.835289	1.830428e-56	2.228558e-53
MsG0580030182.01	MsG0880047590.01	0.820632	6.191990e-53	4.925268e-50
MsG0280007024.01	MsG0580030182.01	0.804073	2.573011e-49	1.314331e-46
MsG0280007071.01	MsG0580030182.01	0.803653	3.146165e-49	1.589734e-46
MsG0280007089.01	MsG0580030182.01	0.809051	2.290649e-50	1.331066e-47
MsG0280007609.01	MsG0580030182.01	0.856439	3.215950e-62	7.676558e-59
MsG0280007790.01	MsG0580030182.01	0.833975	3.914422e-56	4.581823e-53
MsG0280007876.01	MsG0580030182.01	0.833014	6.801421e-56	7.734359e-53
MsG0280008286.01	MsG0580030182.01	0.812885	3.384254e-51	2.177259e-48
MsG0280008327.01	MsG0580030182.01	0.850893	1.264583e-60	2.514296e-57
MsG0280008853.01	MsG0580030182.01	0.806458	8.145360e-50	4.423529e-47
MsG0280008885.01	MsG0580030182.01	0.822871	1.878584e-53	1.591862e-50
MsG0280010002.01	MsG0580030182.01	0.835041	2.113530e-56	2.553834e-53
MsG0280010196.01	MsG0580030182.01	0.808123	3.615589e-50	2.050223e-47
MsG0280010389.01	MsG0580030182.01	0.801966	7.016881e-49	3.395961e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 12 sgRNAs with CRISPR-Local

Find 12 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCATCAGTAAAGATAGATTA+AGG	0.317109	5:-107915372	MsG0580030182.01.T01:CDS
AGTCGAAACCCAGTAGTTAA+TGG	0.326019	5:+107915526	None:intergenic
ATTGCAATCATGCTTTCAAC+TGG	0.422930	5:-107915441	MsG0580030182.01.T01:CDS
GTCTCTGCTATACTTTATAT+CGG	0.428279	5:-107915483	MsG0580030182.01.T01:CDS
ATGCTTTCAACTGGAACCAT+TGG	0.461754	5:-107915432	MsG0580030182.01.T01:CDS
TGGAAGGCATTCTATGCATC+AGG	0.465968	5:-107915578	None:intergenic
TTTGTACTCCATTAACTACT+GGG	0.489517	5:-107915534	MsG0580030182.01.T01:CDS
TTCGACTTGCAGAGTTTGAG+TGG	0.532363	5:-107915510	MsG0580030182.01.T01:CDS
TATCGGCTATTCACTGCTCA+TGG	0.559083	5:-107915466	MsG0580030182.01.T01:CDS
ATATAAAGTATAGCAGAGAC+AGG	0.561532	5:+107915486	None:intergenic
GAACGAGACAAGGAAACCAA+TGG	0.655608	5:+107915416	None:intergenic
GCACAAAGTAGAACGAGACA+AGG	0.678415	5:+107915406	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	TCATCAGTAAAGATAGATTA+AGG	-	Chr5:107915535-107915554	MsG0580030182.01.T01:CDS	25.0%
	ATATAAAGTATAGCAGAGAC+AGG	+	Chr5:107915424-107915443	None:intergenic	30.0%
	GTCTCTGCTATACTTTATAT+CGG	-	Chr5:107915424-107915443	MsG0580030182.01.T01:CDS	30.0%
	TTTGTACTCCATTAACTACT+GGG	-	Chr5:107915373-107915392	MsG0580030182.01.T01:CDS	30.0%
!	TTTTGTACTCCATTAACTAC+TGG	-	Chr5:107915372-107915391	MsG0580030182.01.T01:CDS	30.0%
	ATTGCAATCATGCTTTCAAC+TGG	-	Chr5:107915466-107915485	MsG0580030182.01.T01:CDS	35.0%
	AGTCGAAACCCAGTAGTTAA+TGG	+	Chr5:107915384-107915403	None:intergenic	40.0%
	ATGCTTTCAACTGGAACCAT+TGG	-	Chr5:107915475-107915494	MsG0580030182.01.T01:CDS	40.0%
	GAACGAGACAAGGAAACCAA+TGG	+	Chr5:107915494-107915513	None:intergenic	45.0%
	GCACAAAGTAGAACGAGACA+AGG	+	Chr5:107915504-107915523	None:intergenic	45.0%
!	TATCGGCTATTCACTGCTCA+TGG	-	Chr5:107915441-107915460	MsG0580030182.01.T01:CDS	45.0%
!	TTCGACTTGCAGAGTTTGAG+TGG	-	Chr5:107915397-107915416	MsG0580030182.01.T01:CDS	45.0%

Chromosome	Type	Strat	End	Strand	Name
Chr5	gene	107915342	107915587	107915342	ID=MsG0580030182.01;Name=MsG0580030182.01
Chr5	mRNA	107915342	107915587	107915342	ID=MsG0580030182.01.T01;Parent=MsG0580030182.01;Name=MsG0580030182.01.T01;_AED=0.45;_eAED=0.45;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|81
Chr5	exon	107915342	107915587	107915342	ID=MsG0580030182.01.T01:exon:17597;Parent=MsG0580030182.01.T01
Chr5	CDS	107915342	107915587	107915342	ID=MsG0580030182.01.T01:cds;Parent=MsG0580030182.01.T01

Gene Sequence	>MsG0580030182.01.T01 ATGCATCAGGCTCTGTTTCTCTTTATGTCTTTTTGTACTCCATTAACTACTGGGTTTCGACTTGCAGAGTTTGAGTGGACCTGTCTCTGCTATACTTTATATCGGCTATTCACTGCTCATGGCAATTGCAATCATGCTTTCAACTGGAACCATTGGTTTCCTTGTCTCGTTCTACTTTGTGCATTACTTGTTCTCATCAGTAAAGATAGATTAAGGTTAATCTTTTTGCTATCTCTCATCAACTAA
Protein sequence	>MsG0580030182.01.T01 MHQALFLFMSFCTPLTTGFRLAEFEWTCLCYTLYRLFTAHGNCNHAFNWNHWFPCLVLLCALLVLISKDRLRLIFLLSLIN*