Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880042891.01.T01 | RHN39629.1 | 95.431 | 394 | 9 | 2 | 1 | 394 | 2 | 386 | 0 | 749 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880042891.01.T01 | Q9ZT63 | 70.223 | 403 | 106 | 3 | 1 | 394 | 1 | 398 | 0 | 518 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880042891.01.T01 | A0A072TYD5 | 95.431 | 394 | 9 | 2 | 1 | 394 | 1 | 385 | 0.0 | 749 |
MsG0880042891.01.T01 | A0A396GE13 | 95.431 | 394 | 9 | 2 | 1 | 394 | 2 | 386 | 0.0 | 749 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048383.01 | MsG0880042891.01 | 0.840713 | 7.368165e-58 | 1.058501e-54 |
MsG0080048687.01 | MsG0880042891.01 | 0.845336 | 4.326926e-59 | 7.187675e-56 |
MsG0180000001.01 | MsG0880042891.01 | 0.811843 | 5.714872e-51 | 3.575601e-48 |
MsG0180000101.01 | MsG0880042891.01 | 0.800714 | 1.265912e-48 | 5.935651e-46 |
MsG0180000806.01 | MsG0880042891.01 | 0.827334 | 1.656637e-54 | 1.594690e-51 |
MsG0180001173.01 | MsG0880042891.01 | 0.805664 | 1.196784e-49 | 6.368553e-47 |
MsG0180001260.01 | MsG0880042891.01 | 0.801145 | 1.033922e-48 | 4.901399e-46 |
MsG0180001599.01 | MsG0880042891.01 | 0.814438 | 1.540689e-51 | 1.033813e-48 |
MsG0180003793.01 | MsG0880042891.01 | 0.813553 | 2.414545e-51 | 1.581764e-48 |
MsG0180004050.01 | MsG0880042891.01 | 0.822148 | 2.766154e-53 | 2.296125e-50 |
MsG0180004767.01 | MsG0880042891.01 | 0.800098 | 1.689835e-48 | 7.800729e-46 |
MsG0180004854.01 | MsG0880042891.01 | 0.802039 | 6.776456e-49 | 3.285855e-46 |
MsG0180004861.01 | MsG0880042891.01 | 0.830433 | 2.944557e-55 | 3.101840e-52 |
MsG0180005049.01 | MsG0880042891.01 | 0.801206 | 1.004569e-48 | 4.769393e-46 |
MsG0180005765.01 | MsG0880042891.01 | 0.802588 | 5.223494e-49 | 2.568547e-46 |
MsG0180006013.01 | MsG0880042891.01 | 0.801522 | 8.655661e-49 | 4.142379e-46 |
MsG0780040411.01 | MsG0880042891.01 | 0.805693 | 1.179963e-49 | 6.284063e-47 |
MsG0780040569.01 | MsG0880042891.01 | 0.825608 | 4.272873e-54 | 3.913566e-51 |
MsG0780040845.01 | MsG0880042891.01 | 0.841602 | 4.302055e-58 | 6.354010e-55 |
MsG0780041223.01 | MsG0880042891.01 | 0.807937 | 3.959862e-50 | 2.234396e-47 |
MsG0780041423.01 | MsG0880042891.01 | 0.803091 | 4.113602e-49 | 2.048708e-46 |
MsG0780041796.01 | MsG0880042891.01 | 0.821310 | 4.320657e-53 | 3.502604e-50 |
MsG0880042033.01 | MsG0880042891.01 | 0.821187 | 4.613917e-53 | 3.727720e-50 |
MsG0880042128.01 | MsG0880042891.01 | 0.800231 | 1.588148e-48 | 7.355981e-46 |
MsG0880042552.01 | MsG0880042891.01 | 0.801916 | 7.184894e-49 | 3.473012e-46 |
MsG0880042760.01 | MsG0880042891.01 | 0.802947 | 4.405214e-49 | 2.185978e-46 |
MsG0880042891.01 | MsG0880042991.01 | 0.805351 | 1.392324e-49 | 7.349561e-47 |
MsG0880042891.01 | MsG0880043532.01 | 0.801352 | 9.378402e-49 | 4.469101e-46 |
MsG0880042891.01 | MsG0880044990.01 | 0.802115 | 6.537803e-49 | 3.176223e-46 |
MsG0880042891.01 | MsG0880045294.01 | 0.801275 | 9.722131e-49 | 4.623933e-46 |
MsG0880042891.01 | MsG0880045393.01 | 0.804918 | 1.715492e-49 | 8.956002e-47 |
MsG0880042891.01 | MsG0880045656.01 | 0.828748 | 7.566100e-55 | 7.587927e-52 |
MsG0880042891.01 | MsG0880045951.01 | 0.800237 | 1.583460e-48 | 7.335494e-46 |
MsG0280011388.01 | MsG0880042891.01 | 0.801579 | 8.425190e-49 | 4.037826e-46 |
MsG0380012073.01 | MsG0880042891.01 | 0.812369 | 4.389757e-51 | 2.785928e-48 |
MsG0380013579.01 | MsG0880042891.01 | 0.826600 | 2.481929e-54 | 2.338156e-51 |
MsG0380013641.01 | MsG0880042891.01 | 0.802709 | 4.932832e-49 | 2.433127e-46 |
MsG0380014489.01 | MsG0880042891.01 | 0.807917 | 3.997986e-50 | 2.254720e-47 |
MsG0380014539.01 | MsG0880042891.01 | 0.801995 | 6.921690e-49 | 3.352438e-46 |
MsG0380014778.01 | MsG0880042891.01 | 0.813411 | 2.594155e-51 | 1.692947e-48 |
MsG0680031507.01 | MsG0880042891.01 | 0.802962 | 4.373581e-49 | 2.171168e-46 |
MsG0680031549.01 | MsG0880042891.01 | 0.806076 | 9.804129e-50 | 5.272505e-47 |
MsG0680035306.01 | MsG0880042891.01 | 0.811956 | 5.400848e-51 | 3.389406e-48 |
MsG0680035577.01 | MsG0880042891.01 | 0.820674 | 6.053266e-53 | 4.820780e-50 |
MsG0480018462.01 | MsG0880042891.01 | 0.809572 | 1.770844e-50 | 1.043473e-47 |
MsG0480018477.01 | MsG0880042891.01 | 0.806308 | 8.762798e-50 | 4.740435e-47 |
MsG0480020675.01 | MsG0880042891.01 | 0.805754 | 1.145726e-49 | 6.111402e-47 |
MsG0480021832.01 | MsG0880042891.01 | 0.808284 | 3.340195e-50 | 1.902185e-47 |
MsG0480022223.01 | MsG0880042891.01 | 0.801713 | 7.909320e-49 | 3.803432e-46 |
MsG0480022678.01 | MsG0880042891.01 | 0.801636 | 8.202249e-49 | 3.936639e-46 |
MsG0480022696.01 | MsG0880042891.01 | 0.815540 | 8.772311e-52 | 6.065171e-49 |
MsG0480022960.01 | MsG0880042891.01 | 0.829407 | 5.236996e-55 | 5.355489e-52 |
MsG0480023221.01 | MsG0880042891.01 | 0.818031 | 2.422936e-52 | 1.793388e-49 |
MsG0480023559.01 | MsG0880042891.01 | 0.807241 | 5.564763e-50 | 3.083692e-47 |
MsG0580024339.01 | MsG0880042891.01 | 0.828651 | 7.984673e-55 | 7.985994e-52 |
MsG0580024618.01 | MsG0880042891.01 | 0.800332 | 1.514304e-48 | 7.032344e-46 |
MsG0580024727.01 | MsG0880042891.01 | 0.823864 | 1.101149e-53 | 9.596478e-51 |
MsG0580024819.01 | MsG0880042891.01 | 0.816040 | 6.787093e-52 | 4.757422e-49 |
MsG0580025268.01 | MsG0880042891.01 | 0.822225 | 2.654186e-53 | 2.208075e-50 |
MsG0580025903.01 | MsG0880042891.01 | 0.812026 | 5.214333e-51 | 3.278526e-48 |
MsG0380016290.01 | MsG0880042891.01 | 0.813524 | 2.451085e-51 | 1.604430e-48 |
MsG0380016513.01 | MsG0880042891.01 | 0.816771 | 4.657438e-52 | 3.330389e-49 |
MsG0380016604.01 | MsG0880042891.01 | 0.844101 | 9.309745e-59 | 1.487285e-55 |
MsG0380017719.01 | MsG0880042891.01 | 0.802714 | 4.920421e-49 | 2.427344e-46 |
MsG0380017797.01 | MsG0880042891.01 | 0.825128 | 5.550808e-54 | 5.015093e-51 |
MsG0580026157.01 | MsG0880042891.01 | 0.820418 | 6.933515e-53 | 5.483314e-50 |
MsG0580028897.01 | MsG0880042891.01 | 0.817617 | 3.005087e-52 | 2.199182e-49 |
MsG0280007321.01 | MsG0880042891.01 | 0.809504 | 1.831538e-50 | 1.077228e-47 |
MsG0280007847.01 | MsG0880042891.01 | 0.810027 | 1.413579e-50 | 8.430009e-48 |
MsG0280008909.01 | MsG0880042891.01 | 0.820594 | 6.317479e-53 | 5.019859e-50 |
MsG0280009575.01 | MsG0880042891.01 | 0.822665 | 2.097440e-53 | 1.766988e-50 |
MsG0680035876.01 | MsG0880042891.01 | 0.807870 | 4.091729e-50 | 2.304758e-47 |
MsG0680035888.01 | MsG0880042891.01 | 0.828281 | 9.806869e-55 | 9.703027e-52 |
MsG0780038400.01 | MsG0880042891.01 | 0.800810 | 1.210478e-48 | 5.689511e-46 |
MsG0780038603.01 | MsG0880042891.01 | 0.823294 | 1.496345e-53 | 1.283167e-50 |
PPI
Gene1 | Gene2 | Type |
---|---|---|
MsG0480022549.01 | MsG0880042891.01 | PPI |
MsG0480023897.01 | MsG0880042891.01 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880042891.01.T01 | MTR_8g024240 | 95.431 | 394 | 9 | 2 | 1 | 394 | 1 | 385 | 0.0 | 749 |
MsG0880042891.01.T01 | MTR_2g036390 | 76.923 | 416 | 65 | 3 | 1 | 394 | 1 | 407 | 0.0 | 575 |
MsG0880042891.01.T01 | MTR_4g064893 | 48.603 | 358 | 175 | 3 | 42 | 393 | 40 | 394 | 5.67e-100 | 302 |
MsG0880042891.01.T01 | MTR_6g463330 | 33.333 | 108 | 69 | 2 | 45 | 152 | 421 | 525 | 9.64e-11 | 64.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0880042891.01.T01 | AT2G46800 | 70.223 | 403 | 106 | 3 | 1 | 394 | 1 | 398 | 0.0 | 518 |
MsG0880042891.01.T01 | AT2G46800 | 70.223 | 403 | 106 | 3 | 1 | 394 | 1 | 398 | 0.0 | 518 |
MsG0880042891.01.T01 | AT2G46800 | 70.223 | 403 | 106 | 3 | 1 | 394 | 1 | 398 | 0.0 | 518 |
MsG0880042891.01.T01 | AT2G46800 | 70.223 | 403 | 106 | 3 | 1 | 394 | 1 | 398 | 0.0 | 518 |
MsG0880042891.01.T01 | AT2G46800 | 70.223 | 403 | 106 | 3 | 1 | 394 | 1 | 398 | 0.0 | 518 |
MsG0880042891.01.T01 | AT3G58810 | 68.280 | 372 | 95 | 2 | 23 | 394 | 44 | 392 | 9.66e-168 | 475 |
MsG0880042891.01.T01 | AT3G58810 | 64.500 | 400 | 113 | 3 | 1 | 394 | 55 | 431 | 1.31e-167 | 476 |
MsG0880042891.01.T01 | AT3G61940 | 64.191 | 377 | 89 | 5 | 20 | 394 | 2 | 334 | 3.18e-152 | 433 |
MsG0880042891.01.T01 | AT2G29410 | 44.578 | 166 | 90 | 1 | 13 | 176 | 16 | 181 | 1.72e-44 | 158 |
MsG0880042891.01.T01 | AT2G04620 | 28.497 | 386 | 223 | 8 | 33 | 367 | 386 | 769 | 2.30e-34 | 135 |
MsG0880042891.01.T01 | AT2G04620 | 29.412 | 374 | 223 | 9 | 33 | 367 | 218 | 589 | 2.19e-32 | 129 |
MsG0880042891.01.T01 | AT1G33020 | 58.621 | 58 | 20 | 1 | 337 | 394 | 491 | 544 | 1.87e-12 | 69.3 |
Find 90 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTAGTTGCCATTGTGTTTC+TGG | 0.091032 | 8:-15518031 | MsG0880042891.01.T01:three_prime_UTR |
ATTTATGTTCCTCTTCTTCT+TGG | 0.153720 | 8:+15518522 | None:intergenic |
TTGAGTGTTAATTCAACTTT+TGG | 0.235068 | 8:-15520137 | MsG0880042891.01.T01:five_prime_UTR |
CCGCAAGCAGCCATATTAAT+TGG | 0.265618 | 8:+15518881 | None:intergenic |
ATCATTATGGCTGTGTTATT+AGG | 0.275823 | 8:-15518757 | MsG0880042891.01.T01:CDS |
CTGTTCATGAGCTTCACATT+TGG | 0.282555 | 8:-15518243 | MsG0880042891.01.T01:CDS |
TGTTCATGAGCTTCACATTT+GGG | 0.294250 | 8:-15518242 | MsG0880042891.01.T01:CDS |
TAGTGTCTATCCAATTAATA+TGG | 0.295359 | 8:-15518891 | MsG0880042891.01.T01:CDS |
TCAGCTTGAAAAGGGGATAT+TGG | 0.326926 | 8:-15518284 | MsG0880042891.01.T01:CDS |
CAATTAATATGGCTGCTTGC+GGG | 0.339016 | 8:-15518880 | MsG0880042891.01.T01:CDS |
TTCTTTATGGGCTGCGGGAT+GGG | 0.345119 | 8:-15518968 | MsG0880042891.01.T01:CDS |
TCTTGTGGTTAACATCATTA+TGG | 0.346550 | 8:-15518770 | MsG0880042891.01.T01:CDS |
CCGCGATGCCGATGCAGAAA+TGG | 0.394198 | 8:-15518173 | MsG0880042891.01.T01:CDS |
GCTACTCCTCGCCAGTCGTA+TGG | 0.416422 | 8:-15518943 | MsG0880042891.01.T01:CDS |
CAAAGTATTGGAGTAATGAT+TGG | 0.429651 | 8:-15518460 | MsG0880042891.01.T01:CDS |
CAATCATTACTCCAATACTT+TGG | 0.433927 | 8:+15518461 | None:intergenic |
CAAATCTTCCTTCCAGCATC+AGG | 0.435707 | 8:+15519207 | None:intergenic |
CACATTTGGGCCATTACAGT+TGG | 0.444553 | 8:-15518229 | MsG0880042891.01.T01:CDS |
TGCCGATGCAGAAATGGTCT+TGG | 0.445950 | 8:-15518167 | MsG0880042891.01.T01:CDS |
TGATGCTACTCAGCTTGAAA+AGG | 0.447061 | 8:-15518293 | MsG0880042891.01.T01:CDS |
CTCTCATCATAACAATCAAT+AGG | 0.449147 | 8:+15518069 | None:intergenic |
AACGCAGATCTTCCTGATGC+TGG | 0.451107 | 8:-15519219 | MsG0880042891.01.T01:CDS |
TGATTCACCGATAAGTGGTT+CGG | 0.460837 | 8:+15518555 | None:intergenic |
TTTCTTTATGGGCTGCGGGA+TGG | 0.463688 | 8:-15518969 | MsG0880042891.01.T01:CDS |
GCCATTGATAGACTCATTGC+CGG | 0.464636 | 8:-15518841 | MsG0880042891.01.T01:CDS |
CAAAATCTTCCCAACTGTAA+TGG | 0.466674 | 8:+15518219 | None:intergenic |
CCATGTGGATTCTCAGATGC+TGG | 0.472337 | 8:-15519174 | MsG0880042891.01.T01:CDS |
ATGACTGTTGAACTGGTTGG+TGG | 0.480251 | 8:-15519072 | MsG0880042891.01.T01:CDS |
GATGCTACTCAGCTTGAAAA+GGG | 0.481257 | 8:-15518292 | MsG0880042891.01.T01:CDS |
TTCTTTAGAATCGTTAGAGA+TGG | 0.488494 | 8:+15519149 | None:intergenic |
GGTGTTACCGAACCACTTAT+CGG | 0.489345 | 8:-15518562 | MsG0880042891.01.T01:CDS |
AATTAATATGGCTGCTTGCG+GGG | 0.503347 | 8:-15518879 | MsG0880042891.01.T01:CDS |
GGATAGAGTCGCCGAGTACA+TGG | 0.506706 | 8:+15518482 | None:intergenic |
CTGGAACTCAATTCTCTCCA+TGG | 0.513831 | 8:-15518012 | MsG0880042891.01.T01:three_prime_UTR |
CTACTCCTCGCCAGTCGTAT+GGG | 0.515170 | 8:-15518942 | MsG0880042891.01.T01:CDS |
GTCCAAGACCATTTCTGCAT+CGG | 0.516842 | 8:+15518165 | None:intergenic |
GGCGACTCTATCCAAAGTAT+TGG | 0.525010 | 8:-15518472 | MsG0880042891.01.T01:CDS |
CTATTGATTGTTATGATGAG+AGG | 0.527570 | 8:-15518068 | MsG0880042891.01.T01:three_prime_UTR |
ACATTTGGGCCATTACAGTT+GGG | 0.528212 | 8:-15518228 | MsG0880042891.01.T01:CDS |
AGTTGCTGCATTTGGTCTTG+TGG | 0.528547 | 8:-15518785 | MsG0880042891.01.T01:CDS |
AAAGGGGATATTGGAGATGG+AGG | 0.528785 | 8:-15518275 | MsG0880042891.01.T01:CDS |
TGACTGTTGAACTGGTTGGT+GGG | 0.528847 | 8:-15519071 | MsG0880042891.01.T01:CDS |
ATGCGCACAGCTCTCAGCAC+GGG | 0.529246 | 8:-15519257 | MsG0880042891.01.T01:CDS |
TGATTGGAGGAGCAGTCATA+TGG | 0.529348 | 8:-15518444 | MsG0880042891.01.T01:CDS |
TTCATGACTGTTGAACTGGT+TGG | 0.537554 | 8:-15519075 | MsG0880042891.01.T01:CDS |
GACCACGGACATGGTCATCA+TGG | 0.538513 | 8:-15518682 | MsG0880042891.01.T01:CDS |
CGCAGCCCATAAAGAAAACA+AGG | 0.541633 | 8:+15518975 | None:intergenic |
TGATGCTGCACATCTTCTCT+CGG | 0.546138 | 8:-15519019 | MsG0880042891.01.T01:CDS |
TCATATGGTATAAACCAGAA+TGG | 0.551207 | 8:-15518429 | MsG0880042891.01.T01:CDS |
ATTGGAGATGGAGGAAGTAG+TGG | 0.552789 | 8:-15518266 | MsG0880042891.01.T01:CDS |
TGCAGAAATGGTCTTGGACA+AGG | 0.558212 | 8:-15518161 | MsG0880042891.01.T01:CDS |
ACCGGCAATGAGTCTATCAA+TGG | 0.559996 | 8:+15518840 | None:intergenic |
TGAAAAGGGGATATTGGAGA+TGG | 0.560441 | 8:-15518278 | MsG0880042891.01.T01:CDS |
GCCGGTCCTCAAAATGTGGA+TGG | 0.562681 | 8:-15518823 | MsG0880042891.01.T01:CDS |
GATGCGCACAGCTCTCAGCA+CGG | 0.572499 | 8:-15519258 | MsG0880042891.01.T01:CDS |
CCAATTAATATGGCTGCTTG+CGG | 0.573913 | 8:-15518881 | MsG0880042891.01.T01:CDS |
CATTGCCGGTCCTCAAAATG+TGG | 0.576379 | 8:-15518827 | MsG0880042891.01.T01:CDS |
CACGGTCATGATCACGGCCA+TGG | 0.576823 | 8:-15518715 | MsG0880042891.01.T01:CDS |
TTAGGTCATGATCACGGCCA+TGG | 0.578885 | 8:-15518739 | MsG0880042891.01.T01:CDS |
AACTAGCAATAAGAGAAAGA+AGG | 0.578911 | 8:+15517942 | None:intergenic |
CAGATCTTCCTGATGCTGGA+AGG | 0.583756 | 8:-15519215 | MsG0880042891.01.T01:CDS |
TTCGATGCGAAAGCTTATGA+TGG | 0.585844 | 8:-15519118 | MsG0880042891.01.T01:CDS |
AGTATTGGAGTAATGATTGG+AGG | 0.590084 | 8:-15518457 | MsG0880042891.01.T01:CDS |
CATGATCACGGCCATGGTCA+CGG | 0.600715 | 8:-15518733 | MsG0880042891.01.T01:CDS |
AGAGGAACATAAATGTGCAA+GGG | 0.601512 | 8:-15518513 | MsG0880042891.01.T01:CDS |
CATGGTCACGGTCATGATCA+CGG | 0.602486 | 8:-15518721 | MsG0880042891.01.T01:CDS |
CATGATCACGGCCATGGTCA+CGG | 0.602707 | 8:-15518709 | MsG0880042891.01.T01:CDS |
AAGAGGAACATAAATGTGCA+AGG | 0.606363 | 8:-15518514 | MsG0880042891.01.T01:CDS |
ATTCACCATCACGCACATGA+AGG | 0.615684 | 8:-15518583 | MsG0880042891.01.T01:CDS |
CACGGTCATGACCACGGACA+TGG | 0.619001 | 8:-15518691 | MsG0880042891.01.T01:CDS |
GAGGAACATAAATGTGCAAG+GGG | 0.624945 | 8:-15518512 | MsG0880042891.01.T01:CDS |
GATGCTGGAAGGAAGATTTG+TGG | 0.628927 | 8:-15519204 | MsG0880042891.01.T01:CDS |
GGGGCTTATCTCCATGTACT+CGG | 0.633375 | 8:-15518493 | MsG0880042891.01.T01:CDS |
CGTGGTCATGACCGTGACCA+TGG | 0.633589 | 8:+15518698 | None:intergenic |
TGTGATCTTCATGAGTATGA+TGG | 0.636300 | 8:+15518605 | None:intergenic |
CGTGATCATGACCGTGACCA+TGG | 0.646434 | 8:+15518722 | None:intergenic |
AAACTGTAAGTCCGTGACTG+TGG | 0.653391 | 8:+15518659 | None:intergenic |
GTGTTATTAGGTCATGATCA+CGG | 0.662294 | 8:-15518745 | MsG0880042891.01.T01:CDS |
ATGCTACTCAGCTTGAAAAG+GGG | 0.663099 | 8:-15518291 | MsG0880042891.01.T01:CDS |
GGTCATCATGGCCACAGTCA+CGG | 0.667903 | 8:-15518670 | MsG0880042891.01.T01:CDS |
CATGGTCACGGTCATGACCA+CGG | 0.670414 | 8:-15518697 | MsG0880042891.01.T01:CDS |
ATTGAGTTCCAGAAACACAA+TGG | 0.673950 | 8:+15518023 | None:intergenic |
TGAGTAGCATCAATCTCGCG+AGG | 0.676529 | 8:+15518304 | None:intergenic |
TAACACCTTCATGTGCGTGA+TGG | 0.678047 | 8:+15518578 | None:intergenic |
CCAGCATCTGAGAATCCACA+TGG | 0.679240 | 8:+15519174 | None:intergenic |
GGCCATGATGACCATGTCCG+TGG | 0.689643 | 8:+15518680 | None:intergenic |
ATTTGTGGTGAAGCACCATG+TGG | 0.697709 | 8:-15519189 | MsG0880042891.01.T01:CDS |
CCATTTCTGCATCGGCATCG+CGG | 0.700086 | 8:+15518173 | None:intergenic |
CAGTCATGAAAATCACACAC+AGG | 0.700380 | 8:+15519088 | None:intergenic |
GATCTTCATGAGTATGATGG+TGG | 0.722381 | 8:+15518608 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GTTTTAGATTTTTATTTTTA+TGG | - | Chr8:15518193-15518212 | MsG0880042891.01.T01:CDS | 10.0% |
!! | TATTATTATTATTATTGCCA+TGG | + | Chr8:15520133-15520152 | None:intergenic | 15.0% |
!! | TTAATTACTTATTCTACTTA+TGG | - | Chr8:15518666-15518685 | MsG0880042891.01.T01:CDS | 15.0% |
!! | TTTCATTAATATATTGCAGA+TGG | - | Chr8:15518845-15518864 | MsG0880042891.01.T01:CDS | 20.0% |
!!! | TTAATTTTTTTTGTGCTTCA+AGG | - | Chr8:15518082-15518101 | MsG0880042891.01.T01:exon | 20.0% |
!!! | TTATTTCTTGAAGATAACAA+CGG | - | Chr8:15518549-15518568 | MsG0880042891.01.T01:CDS | 20.0% |
! | AATGTTCATTATCTTGATCA+AGG | - | Chr8:15518146-15518165 | MsG0880042891.01.T01:CDS | 25.0% |
! | ATAAGTAATTAAACGAAAGC+TGG | + | Chr8:15518658-15518677 | None:intergenic | 25.0% |
! | ATGAACATTAACAAAAAGAG+AGG | + | Chr8:15518135-15518154 | None:intergenic | 25.0% |
! | ATTTGACGAACTATTTGAAA+AGG | - | Chr8:15518507-15518526 | MsG0880042891.01.T01:CDS | 25.0% |
! | CACCGTTTATTAAATTTCAA+TGG | + | Chr8:15518468-15518487 | None:intergenic | 25.0% |
! | CGCCATTGAAATTTAATAAA+CGG | - | Chr8:15518463-15518482 | MsG0880042891.01.T01:CDS | 25.0% |
! | CTTATGGAGAAATATATCTA+TGG | - | Chr8:15518682-15518701 | MsG0880042891.01.T01:CDS | 25.0% |
! | TAGTGTCTATCCAATTAATA+TGG | - | Chr8:15519234-15519253 | MsG0880042891.01.T01:CDS | 25.0% |
! | TGAAATTGAACTGAATCAAT+TGG | - | Chr8:15518332-15518351 | MsG0880042891.01.T01:CDS | 25.0% |
! | TTTGACGAACTATTTGAAAA+GGG | - | Chr8:15518508-15518527 | MsG0880042891.01.T01:CDS | 25.0% |
!! | AAATCAACTATTTTCCATTC+TGG | + | Chr8:15519713-15519732 | None:intergenic | 25.0% |
!! | AATTTGCACTCTATTCTTTT+CGG | - | Chr8:15519733-15519752 | MsG0880042891.01.T01:intron | 25.0% |
!! | ACTTTGAAGAATGTTCATAA+TGG | - | Chr8:15518247-15518266 | MsG0880042891.01.T01:CDS | 25.0% |
!! | TTGAGTGTTAATTCAACTTT+TGG | - | Chr8:15517988-15518007 | MsG0880042891.01.T01:three_prime_UTR | 25.0% |
!!! | TAACATTTTAGAAGTTCTGA+TGG | - | Chr8:15519790-15519809 | MsG0880042891.01.T01:intron | 25.0% |
!!! | TATCTCCTTGTTTTCTTTAT+GGG | - | Chr8:15519145-15519164 | MsG0880042891.01.T01:CDS | 25.0% |
!!! | TTGTTTCTTATGGATTTTGA+AGG | - | Chr8:15518360-15518379 | MsG0880042891.01.T01:CDS | 25.0% |
!!! | TTTTTCAGAATAGAGATTCT+CGG | - | Chr8:15519206-15519225 | MsG0880042891.01.T01:CDS | 25.0% |
AAGAAAAATCCAAGAAGAAG+AGG | - | Chr8:15519594-15519613 | MsG0880042891.01.T01:intron | 30.0% | |
ATTTATGTTCCTCTTCTTCT+TGG | + | Chr8:15519606-15519625 | None:intergenic | 30.0% | |
CAATCATTACTCCAATACTT+TGG | + | Chr8:15519667-15519686 | None:intergenic | 30.0% | |
CACAAAAACAATAGCAAACA+GGG | + | Chr8:15518278-15518297 | None:intergenic | 30.0% | |
CTCTCATCATAACAATCAAT+AGG | + | Chr8:15520059-15520078 | None:intergenic | 30.0% | |
TCATATGGTATAAACCAGAA+TGG | - | Chr8:15519696-15519715 | MsG0880042891.01.T01:intron | 30.0% | |
TCTTGTGGTTAACATCATTA+TGG | - | Chr8:15519355-15519374 | MsG0880042891.01.T01:intron | 30.0% | |
TTGGCATGATCAATCAAAAA+AGG | + | Chr8:15518057-15518076 | None:intergenic | 30.0% | |
! | AAAAAACCATCCACATTTTG+AGG | + | Chr8:15519311-15519330 | None:intergenic | 30.0% |
! | AGTGTTAATTCAACTTTTGG+AGG | - | Chr8:15517991-15518010 | MsG0880042891.01.T01:three_prime_UTR | 30.0% |
! | ATCATTATGGCTGTGTTATT+AGG | - | Chr8:15519368-15519387 | MsG0880042891.01.T01:intron | 30.0% |
! | ATTCTTTTCGGCAATTGTTT+TGG | - | Chr8:15519745-15519764 | MsG0880042891.01.T01:intron | 30.0% |
! | ATTTTTATGGATCCTGTGTT+TGG | - | Chr8:15518206-15518225 | MsG0880042891.01.T01:CDS | 30.0% |
! | CTATTGATTGTTATGATGAG+AGG | - | Chr8:15520057-15520076 | MsG0880042891.01.T01:intron | 30.0% |
! | GTCATGTACAAAGTTTTTGA+TGG | - | Chr8:15518733-15518752 | MsG0880042891.01.T01:CDS | 30.0% |
! | GTGTTAATTCAACTTTTGGA+GGG | - | Chr8:15517992-15518011 | MsG0880042891.01.T01:three_prime_UTR | 30.0% |
! | TTAGACGTTTTACTGGATAA+TGG | - | Chr8:15518574-15518593 | MsG0880042891.01.T01:CDS | 30.0% |
! | TTCTTTTCGGCAATTGTTTT+GGG | - | Chr8:15519746-15519765 | MsG0880042891.01.T01:intron | 30.0% |
! | TTTTTATGGATCCTGTGTTT+GGG | - | Chr8:15518207-15518226 | MsG0880042891.01.T01:CDS | 30.0% |
!! | CAAAGTATTGGAGTAATGAT+TGG | - | Chr8:15519665-15519684 | MsG0880042891.01.T01:intron | 30.0% |
!! | TTCTTTAGAATCGTTAGAGA+TGG | + | Chr8:15518979-15518998 | None:intergenic | 30.0% |
!!! | CTATCTCCTTGTTTTCTTTA+TGG | - | Chr8:15519144-15519163 | MsG0880042891.01.T01:CDS | 30.0% |
AAGAGGAACATAAATGTGCA+AGG | - | Chr8:15519611-15519630 | MsG0880042891.01.T01:intron | 35.0% | |
AGAGGAACATAAATGTGCAA+GGG | - | Chr8:15519612-15519631 | MsG0880042891.01.T01:intron | 35.0% | |
ATTATCTTGATCAAGGATGC+TGG | - | Chr8:15518153-15518172 | MsG0880042891.01.T01:CDS | 35.0% | |
ATTGAGTTCCAGAAACACAA+TGG | + | Chr8:15520105-15520124 | None:intergenic | 35.0% | |
CAAAAAGAGAGGCAAAAACT+TGG | + | Chr8:15518124-15518143 | None:intergenic | 35.0% | |
CAAAATCTTCCCAACTGTAA+TGG | + | Chr8:15519909-15519928 | None:intergenic | 35.0% | |
CCACAAAAACAATAGCAAAC+AGG | + | Chr8:15518279-15518298 | None:intergenic | 35.0% | |
GCATGATCAATCAAAAAAGG+TGG | + | Chr8:15518054-15518073 | None:intergenic | 35.0% | |
TAAACGAAAGCTGGCAAAAA+AGG | + | Chr8:15518649-15518668 | None:intergenic | 35.0% | |
TACTGTATGCTTCTGTATTC+TGG | - | Chr8:15518795-15518814 | MsG0880042891.01.T01:CDS | 35.0% | |
TGTGATCTTCATGAGTATGA+TGG | + | Chr8:15519523-15519542 | None:intergenic | 35.0% | |
TGTTCATGAGCTTCACATTT+GGG | - | Chr8:15519883-15519902 | MsG0880042891.01.T01:intron | 35.0% | |
! | AGTATTGGAGTAATGATTGG+AGG | - | Chr8:15519668-15519687 | MsG0880042891.01.T01:intron | 35.0% |
! | ATGTTTTCAGTTGCTGCATT+TGG | - | Chr8:15519332-15519351 | MsG0880042891.01.T01:intron | 35.0% |
! | GATTTTCATGACTGTTGAAC+TGG | - | Chr8:15519046-15519065 | MsG0880042891.01.T01:CDS | 35.0% |
! | GTGTTATTAGGTCATGATCA+CGG | - | Chr8:15519380-15519399 | MsG0880042891.01.T01:intron | 35.0% |
!! | ATTGGCTGCTTTGTTTCTTA+TGG | - | Chr8:15518350-15518369 | MsG0880042891.01.T01:CDS | 35.0% |
!! | TAATTCAACTTTTGGAGGGT+AGG | - | Chr8:15517996-15518015 | MsG0880042891.01.T01:three_prime_UTR | 35.0% |
!! | TCTTTTGATTCACCGATAAG+TGG | + | Chr8:15519578-15519597 | None:intergenic | 35.0% |
!!! | CCTGTTTGCTATTGTTTTTG+TGG | - | Chr8:15518276-15518295 | MsG0880042891.01.T01:CDS | 35.0% |
AAGCTGGCAAAAAAGGAGTA+AGG | + | Chr8:15518642-15518661 | None:intergenic | 40.0% | |
AATTAATATGGCTGCTTGCG+GGG | - | Chr8:15519246-15519265 | MsG0880042891.01.T01:CDS | 40.0% | |
ACATTTGGGCCATTACAGTT+GGG | - | Chr8:15519897-15519916 | MsG0880042891.01.T01:intron | 40.0% | |
ACTAGTTGCCATTGTGTTTC+TGG | - | Chr8:15520094-15520113 | MsG0880042891.01.T01:intron | 40.0% | |
ATGCTACTCAGCTTGAAAAG+GGG | - | Chr8:15519834-15519853 | MsG0880042891.01.T01:intron | 40.0% | |
CAATTAATATGGCTGCTTGC+GGG | - | Chr8:15519245-15519264 | MsG0880042891.01.T01:CDS | 40.0% | |
CAGTCATGAAAATCACACAC+AGG | + | Chr8:15519040-15519059 | None:intergenic | 40.0% | |
CCAATTAATATGGCTGCTTG+CGG | - | Chr8:15519244-15519263 | MsG0880042891.01.T01:CDS | 40.0% | |
CTGTTCATGAGCTTCACATT+TGG | - | Chr8:15519882-15519901 | MsG0880042891.01.T01:intron | 40.0% | |
GAGGAACATAAATGTGCAAG+GGG | - | Chr8:15519613-15519632 | MsG0880042891.01.T01:intron | 40.0% | |
GATCTTCATGAGTATGATGG+TGG | + | Chr8:15519520-15519539 | None:intergenic | 40.0% | |
GATGCTACTCAGCTTGAAAA+GGG | - | Chr8:15519833-15519852 | MsG0880042891.01.T01:intron | 40.0% | |
TCAGCTTGAAAAGGGGATAT+TGG | - | Chr8:15519841-15519860 | MsG0880042891.01.T01:intron | 40.0% | |
TGAAAAGGGGATATTGGAGA+TGG | - | Chr8:15519847-15519866 | MsG0880042891.01.T01:intron | 40.0% | |
TGATGCTACTCAGCTTGAAA+AGG | - | Chr8:15519832-15519851 | MsG0880042891.01.T01:intron | 40.0% | |
TGATTCACCGATAAGTGGTT+CGG | + | Chr8:15519573-15519592 | None:intergenic | 40.0% | |
TTAAAACCATGCCCAAACAC+AGG | + | Chr8:15518221-15518240 | None:intergenic | 40.0% | |
TTCATGACTGTTGAACTGGT+TGG | - | Chr8:15519050-15519069 | MsG0880042891.01.T01:CDS | 40.0% | |
TTCGATGCGAAAGCTTATGA+TGG | - | Chr8:15519007-15519026 | MsG0880042891.01.T01:CDS | 40.0% | |
! | AACGGTCTTAGACGTTTTAC+TGG | - | Chr8:15518567-15518586 | MsG0880042891.01.T01:CDS | 40.0% |
! | TTCTGAAAAACCCATACGAC+TGG | + | Chr8:15519196-15519215 | None:intergenic | 40.0% |
!! | CTTGTTTTCTTTATGGGCTG+CGG | - | Chr8:15519151-15519170 | MsG0880042891.01.T01:CDS | 40.0% |
!! | GAAGGAGTATTAGTGTCAGA+AGG | - | Chr8:15518378-15518397 | MsG0880042891.01.T01:CDS | 40.0% |
!! | TTGTTTTCTTTATGGGCTGC+GGG | - | Chr8:15519152-15519171 | MsG0880042891.01.T01:CDS | 40.0% |
AAACTGTAAGTCCGTGACTG+TGG | + | Chr8:15519469-15519488 | None:intergenic | 45.0% | |
AAAGGGGATATTGGAGATGG+AGG | - | Chr8:15519850-15519869 | MsG0880042891.01.T01:intron | 45.0% | |
ACCGGCAATGAGTCTATCAA+TGG | + | Chr8:15519288-15519307 | None:intergenic | 45.0% | |
ATGACTGTTGAACTGGTTGG+TGG | - | Chr8:15519053-15519072 | MsG0880042891.01.T01:CDS | 45.0% | |
ATTAGTGTCAGAAGGCTGTC+TGG | - | Chr8:15518386-15518405 | MsG0880042891.01.T01:CDS | 45.0% | |
ATTCACCATCACGCACATGA+AGG | - | Chr8:15519542-15519561 | MsG0880042891.01.T01:intron | 45.0% | |
ATTGGAGATGGAGGAAGTAG+TGG | - | Chr8:15519859-15519878 | MsG0880042891.01.T01:intron | 45.0% | |
CAAATCTTCCTTCCAGCATC+AGG | + | Chr8:15518921-15518940 | None:intergenic | 45.0% | |
CACATTTGGGCCATTACAGT+TGG | - | Chr8:15519896-15519915 | MsG0880042891.01.T01:intron | 45.0% | |
CCGCAAGCAGCCATATTAAT+TGG | + | Chr8:15519247-15519266 | None:intergenic | 45.0% | |
CGCAGCCCATAAAGAAAACA+AGG | + | Chr8:15519153-15519172 | None:intergenic | 45.0% | |
CTGGAACTCAATTCTCTCCA+TGG | - | Chr8:15520113-15520132 | MsG0880042891.01.T01:intron | 45.0% | |
GATGCTGGAAGGAAGATTTG+TGG | - | Chr8:15518921-15518940 | MsG0880042891.01.T01:CDS | 45.0% | |
GCCATTGATAGACTCATTGC+CGG | - | Chr8:15519284-15519303 | MsG0880042891.01.T01:intron | 45.0% | |
GGCGACTCTATCCAAAGTAT+TGG | - | Chr8:15519653-15519672 | MsG0880042891.01.T01:intron | 45.0% | |
GTCCAAGACCATTTCTGCAT+CGG | + | Chr8:15519963-15519982 | None:intergenic | 45.0% | |
TAACACCTTCATGTGCGTGA+TGG | + | Chr8:15519550-15519569 | None:intergenic | 45.0% | |
TGACTGTTGAACTGGTTGGT+GGG | - | Chr8:15519054-15519073 | MsG0880042891.01.T01:CDS | 45.0% | |
TGATGCTGCACATCTTCTCT+CGG | - | Chr8:15519106-15519125 | MsG0880042891.01.T01:CDS | 45.0% | |
TGATTGGAGGAGCAGTCATA+TGG | - | Chr8:15519681-15519700 | MsG0880042891.01.T01:intron | 45.0% | |
! | ATTTGTGGTGAAGCACCATG+TGG | - | Chr8:15518936-15518955 | MsG0880042891.01.T01:CDS | 45.0% |
! | GGTGTTACCGAACCACTTAT+CGG | - | Chr8:15519563-15519582 | MsG0880042891.01.T01:intron | 45.0% |
! | TGCAGAAATGGTCTTGGACA+AGG | - | Chr8:15519964-15519983 | MsG0880042891.01.T01:intron | 45.0% |
!! | ACCATCCACATTTTGAGGAC+CGG | + | Chr8:15519306-15519325 | None:intergenic | 45.0% |
!! | AGTTGCTGCATTTGGTCTTG+TGG | - | Chr8:15519340-15519359 | MsG0880042891.01.T01:intron | 45.0% |
!! | CATCGCGGTTGATTTTCACA+TGG | + | Chr8:15519940-15519959 | None:intergenic | 45.0% |
!! | ACAAAAAAAATTAAAAAAAT+TGG | + | Chr8:15518076-15518095 | None:intergenic | 5.0% |
AAAAACCCATACGACTGGCG+AGG | + | Chr8:15519191-15519210 | None:intergenic | 50.0% | |
AACGCAGATCTTCCTGATGC+TGG | - | Chr8:15518906-15518925 | MsG0880042891.01.T01:CDS | 50.0% | |
ATGGATCCTGTGTTTGGGCA+TGG | - | Chr8:15518212-15518231 | MsG0880042891.01.T01:CDS | 50.0% | |
CAGATCTTCCTGATGCTGGA+AGG | - | Chr8:15518910-15518929 | MsG0880042891.01.T01:CDS | 50.0% | |
CATGGTCACGGTCATGATCA+CGG | - | Chr8:15519404-15519423 | MsG0880042891.01.T01:intron | 50.0% | |
CATTGCCGGTCCTCAAAATG+TGG | - | Chr8:15519298-15519317 | MsG0880042891.01.T01:intron | 50.0% | |
CCAGCATCTGAGAATCCACA+TGG | + | Chr8:15518954-15518973 | None:intergenic | 50.0% | |
CCATGTGGATTCTCAGATGC+TGG | - | Chr8:15518951-15518970 | MsG0880042891.01.T01:CDS | 50.0% | |
GGGGCTTATCTCCATGTACT+CGG | - | Chr8:15519632-15519651 | MsG0880042891.01.T01:intron | 50.0% | |
TGAGTAGCATCAATCTCGCG+AGG | + | Chr8:15519824-15519843 | None:intergenic | 50.0% | |
TGCCGATGCAGAAATGGTCT+TGG | - | Chr8:15519958-15519977 | MsG0880042891.01.T01:intron | 50.0% | |
TTAGGTCATGATCACGGCCA+TGG | - | Chr8:15519386-15519405 | MsG0880042891.01.T01:intron | 50.0% | |
! | TTCTTTATGGGCTGCGGGAT+GGG | - | Chr8:15519157-15519176 | MsG0880042891.01.T01:CDS | 50.0% |
! | TTTCTTTATGGGCTGCGGGA+TGG | - | Chr8:15519156-15519175 | MsG0880042891.01.T01:CDS | 50.0% |
CATGATCACGGCCATGGTCA+CGG | - | Chr8:15519392-15519411 | MsG0880042891.01.T01:intron | 55.0% | |
CATGGTCACGGTCATGACCA+CGG | - | Chr8:15519428-15519447 | MsG0880042891.01.T01:intron | 55.0% | |
CGTGATCATGACCGTGACCA+TGG | + | Chr8:15519406-15519425 | None:intergenic | 55.0% | |
CTACTCCTCGCCAGTCGTAT+GGG | - | Chr8:15519183-15519202 | MsG0880042891.01.T01:CDS | 55.0% | |
GACCACGGACATGGTCATCA+TGG | - | Chr8:15519443-15519462 | MsG0880042891.01.T01:intron | 55.0% | |
GCCGGTCCTCAAAATGTGGA+TGG | - | Chr8:15519302-15519321 | MsG0880042891.01.T01:intron | 55.0% | |
GGATAGAGTCGCCGAGTACA+TGG | + | Chr8:15519646-15519665 | None:intergenic | 55.0% | |
GGCTGTCTGGACAGCAGTTT+CGG | - | Chr8:15518399-15518418 | MsG0880042891.01.T01:CDS | 55.0% | |
GGTCATCATGGCCACAGTCA+CGG | - | Chr8:15519455-15519474 | MsG0880042891.01.T01:intron | 55.0% | |
! | CCATTTCTGCATCGGCATCG+CGG | + | Chr8:15519955-15519974 | None:intergenic | 55.0% |
ATGCGCACAGCTCTCAGCAC+GGG | - | Chr8:15518868-15518887 | MsG0880042891.01.T01:CDS | 60.0% | |
CACGGTCATGACCACGGACA+TGG | - | Chr8:15519434-15519453 | MsG0880042891.01.T01:intron | 60.0% | |
CACGGTCATGATCACGGCCA+TGG | - | Chr8:15519410-15519429 | MsG0880042891.01.T01:intron | 60.0% | |
CCGCGATGCCGATGCAGAAA+TGG | - | Chr8:15519952-15519971 | MsG0880042891.01.T01:intron | 60.0% | |
CGTGGTCATGACCGTGACCA+TGG | + | Chr8:15519430-15519449 | None:intergenic | 60.0% | |
GATGCGCACAGCTCTCAGCA+CGG | - | Chr8:15518867-15518886 | MsG0880042891.01.T01:CDS | 60.0% | |
GCTACTCCTCGCCAGTCGTA+TGG | - | Chr8:15519182-15519201 | MsG0880042891.01.T01:CDS | 60.0% | |
GGCCATGATGACCATGTCCG+TGG | + | Chr8:15519448-15519467 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr8 | gene | 15517955 | 15520192 | 15517955 | ID=MsG0880042891.01;Name=MsG0880042891.01 |
Chr8 | mRNA | 15517955 | 15520192 | 15517955 | ID=MsG0880042891.01.T01;Parent=MsG0880042891.01;Name=MsG0880042891.01.T01;_AED=0.44;_eAED=0.44;_QI=59|1|1|1|0|0.5|2|144|394 |
Chr8 | exon | 15517955 | 15519283 | 15517955 | ID=MsG0880042891.01.T01:exon:37018;Parent=MsG0880042891.01.T01 |
Chr8 | exon | 15520134 | 15520192 | 15520134 | ID=MsG0880042891.01.T01:exon:37017;Parent=MsG0880042891.01.T01 |
Chr8 | five_prime_UTR | 15520134 | 15520192 | 15520134 | ID=MsG0880042891.01.T01:five_prime_utr;Parent=MsG0880042891.01.T01 |
Chr8 | CDS | 15518099 | 15519283 | 15518099 | ID=MsG0880042891.01.T01:cds;Parent=MsG0880042891.01.T01 |
Chr8 | three_prime_UTR | 15517955 | 15518098 | 15517955 | ID=MsG0880042891.01.T01:three_prime_utr;Parent=MsG0880042891.01.T01 |
Gene Sequence |
Protein sequence |