AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880042891.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042891.01.T01 MTR_8g024240 95.431 394 9 2 1 394 1 385 0.0 749
MsG0880042891.01.T01 MTR_2g036390 76.923 416 65 3 1 394 1 407 0.0 575
MsG0880042891.01.T01 MTR_4g064893 48.603 358 175 3 42 393 40 394 5.67e-100 302
MsG0880042891.01.T01 MTR_6g463330 33.333 108 69 2 45 152 421 525 9.64e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880042891.01.T01 AT2G46800 70.223 403 106 3 1 394 1 398 0.0 518
MsG0880042891.01.T01 AT2G46800 70.223 403 106 3 1 394 1 398 0.0 518
MsG0880042891.01.T01 AT2G46800 70.223 403 106 3 1 394 1 398 0.0 518
MsG0880042891.01.T01 AT2G46800 70.223 403 106 3 1 394 1 398 0.0 518
MsG0880042891.01.T01 AT2G46800 70.223 403 106 3 1 394 1 398 0.0 518
MsG0880042891.01.T01 AT3G58810 68.280 372 95 2 23 394 44 392 9.66e-168 475
MsG0880042891.01.T01 AT3G58810 64.500 400 113 3 1 394 55 431 1.31e-167 476
MsG0880042891.01.T01 AT3G61940 64.191 377 89 5 20 394 2 334 3.18e-152 433
MsG0880042891.01.T01 AT2G29410 44.578 166 90 1 13 176 16 181 1.72e-44 158
MsG0880042891.01.T01 AT2G04620 28.497 386 223 8 33 367 386 769 2.30e-34 135
MsG0880042891.01.T01 AT2G04620 29.412 374 223 9 33 367 218 589 2.19e-32 129
MsG0880042891.01.T01 AT1G33020 58.621 58 20 1 337 394 491 544 1.87e-12 69.3

Find 90 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAGTTGCCATTGTGTTTC+TGG 0.091032 8:-15518031 MsG0880042891.01.T01:three_prime_UTR
ATTTATGTTCCTCTTCTTCT+TGG 0.153720 8:+15518522 None:intergenic
TTGAGTGTTAATTCAACTTT+TGG 0.235068 8:-15520137 MsG0880042891.01.T01:five_prime_UTR
CCGCAAGCAGCCATATTAAT+TGG 0.265618 8:+15518881 None:intergenic
ATCATTATGGCTGTGTTATT+AGG 0.275823 8:-15518757 MsG0880042891.01.T01:CDS
CTGTTCATGAGCTTCACATT+TGG 0.282555 8:-15518243 MsG0880042891.01.T01:CDS
TGTTCATGAGCTTCACATTT+GGG 0.294250 8:-15518242 MsG0880042891.01.T01:CDS
TAGTGTCTATCCAATTAATA+TGG 0.295359 8:-15518891 MsG0880042891.01.T01:CDS
TCAGCTTGAAAAGGGGATAT+TGG 0.326926 8:-15518284 MsG0880042891.01.T01:CDS
CAATTAATATGGCTGCTTGC+GGG 0.339016 8:-15518880 MsG0880042891.01.T01:CDS
TTCTTTATGGGCTGCGGGAT+GGG 0.345119 8:-15518968 MsG0880042891.01.T01:CDS
TCTTGTGGTTAACATCATTA+TGG 0.346550 8:-15518770 MsG0880042891.01.T01:CDS
CCGCGATGCCGATGCAGAAA+TGG 0.394198 8:-15518173 MsG0880042891.01.T01:CDS
GCTACTCCTCGCCAGTCGTA+TGG 0.416422 8:-15518943 MsG0880042891.01.T01:CDS
CAAAGTATTGGAGTAATGAT+TGG 0.429651 8:-15518460 MsG0880042891.01.T01:CDS
CAATCATTACTCCAATACTT+TGG 0.433927 8:+15518461 None:intergenic
CAAATCTTCCTTCCAGCATC+AGG 0.435707 8:+15519207 None:intergenic
CACATTTGGGCCATTACAGT+TGG 0.444553 8:-15518229 MsG0880042891.01.T01:CDS
TGCCGATGCAGAAATGGTCT+TGG 0.445950 8:-15518167 MsG0880042891.01.T01:CDS
TGATGCTACTCAGCTTGAAA+AGG 0.447061 8:-15518293 MsG0880042891.01.T01:CDS
CTCTCATCATAACAATCAAT+AGG 0.449147 8:+15518069 None:intergenic
AACGCAGATCTTCCTGATGC+TGG 0.451107 8:-15519219 MsG0880042891.01.T01:CDS
TGATTCACCGATAAGTGGTT+CGG 0.460837 8:+15518555 None:intergenic
TTTCTTTATGGGCTGCGGGA+TGG 0.463688 8:-15518969 MsG0880042891.01.T01:CDS
GCCATTGATAGACTCATTGC+CGG 0.464636 8:-15518841 MsG0880042891.01.T01:CDS
CAAAATCTTCCCAACTGTAA+TGG 0.466674 8:+15518219 None:intergenic
CCATGTGGATTCTCAGATGC+TGG 0.472337 8:-15519174 MsG0880042891.01.T01:CDS
ATGACTGTTGAACTGGTTGG+TGG 0.480251 8:-15519072 MsG0880042891.01.T01:CDS
GATGCTACTCAGCTTGAAAA+GGG 0.481257 8:-15518292 MsG0880042891.01.T01:CDS
TTCTTTAGAATCGTTAGAGA+TGG 0.488494 8:+15519149 None:intergenic
GGTGTTACCGAACCACTTAT+CGG 0.489345 8:-15518562 MsG0880042891.01.T01:CDS
AATTAATATGGCTGCTTGCG+GGG 0.503347 8:-15518879 MsG0880042891.01.T01:CDS
GGATAGAGTCGCCGAGTACA+TGG 0.506706 8:+15518482 None:intergenic
CTGGAACTCAATTCTCTCCA+TGG 0.513831 8:-15518012 MsG0880042891.01.T01:three_prime_UTR
CTACTCCTCGCCAGTCGTAT+GGG 0.515170 8:-15518942 MsG0880042891.01.T01:CDS
GTCCAAGACCATTTCTGCAT+CGG 0.516842 8:+15518165 None:intergenic
GGCGACTCTATCCAAAGTAT+TGG 0.525010 8:-15518472 MsG0880042891.01.T01:CDS
CTATTGATTGTTATGATGAG+AGG 0.527570 8:-15518068 MsG0880042891.01.T01:three_prime_UTR
ACATTTGGGCCATTACAGTT+GGG 0.528212 8:-15518228 MsG0880042891.01.T01:CDS
AGTTGCTGCATTTGGTCTTG+TGG 0.528547 8:-15518785 MsG0880042891.01.T01:CDS
AAAGGGGATATTGGAGATGG+AGG 0.528785 8:-15518275 MsG0880042891.01.T01:CDS
TGACTGTTGAACTGGTTGGT+GGG 0.528847 8:-15519071 MsG0880042891.01.T01:CDS
ATGCGCACAGCTCTCAGCAC+GGG 0.529246 8:-15519257 MsG0880042891.01.T01:CDS
TGATTGGAGGAGCAGTCATA+TGG 0.529348 8:-15518444 MsG0880042891.01.T01:CDS
TTCATGACTGTTGAACTGGT+TGG 0.537554 8:-15519075 MsG0880042891.01.T01:CDS
GACCACGGACATGGTCATCA+TGG 0.538513 8:-15518682 MsG0880042891.01.T01:CDS
CGCAGCCCATAAAGAAAACA+AGG 0.541633 8:+15518975 None:intergenic
TGATGCTGCACATCTTCTCT+CGG 0.546138 8:-15519019 MsG0880042891.01.T01:CDS
TCATATGGTATAAACCAGAA+TGG 0.551207 8:-15518429 MsG0880042891.01.T01:CDS
ATTGGAGATGGAGGAAGTAG+TGG 0.552789 8:-15518266 MsG0880042891.01.T01:CDS
TGCAGAAATGGTCTTGGACA+AGG 0.558212 8:-15518161 MsG0880042891.01.T01:CDS
ACCGGCAATGAGTCTATCAA+TGG 0.559996 8:+15518840 None:intergenic
TGAAAAGGGGATATTGGAGA+TGG 0.560441 8:-15518278 MsG0880042891.01.T01:CDS
GCCGGTCCTCAAAATGTGGA+TGG 0.562681 8:-15518823 MsG0880042891.01.T01:CDS
GATGCGCACAGCTCTCAGCA+CGG 0.572499 8:-15519258 MsG0880042891.01.T01:CDS
CCAATTAATATGGCTGCTTG+CGG 0.573913 8:-15518881 MsG0880042891.01.T01:CDS
CATTGCCGGTCCTCAAAATG+TGG 0.576379 8:-15518827 MsG0880042891.01.T01:CDS
CACGGTCATGATCACGGCCA+TGG 0.576823 8:-15518715 MsG0880042891.01.T01:CDS
TTAGGTCATGATCACGGCCA+TGG 0.578885 8:-15518739 MsG0880042891.01.T01:CDS
AACTAGCAATAAGAGAAAGA+AGG 0.578911 8:+15517942 None:intergenic
CAGATCTTCCTGATGCTGGA+AGG 0.583756 8:-15519215 MsG0880042891.01.T01:CDS
TTCGATGCGAAAGCTTATGA+TGG 0.585844 8:-15519118 MsG0880042891.01.T01:CDS
AGTATTGGAGTAATGATTGG+AGG 0.590084 8:-15518457 MsG0880042891.01.T01:CDS
CATGATCACGGCCATGGTCA+CGG 0.600715 8:-15518733 MsG0880042891.01.T01:CDS
AGAGGAACATAAATGTGCAA+GGG 0.601512 8:-15518513 MsG0880042891.01.T01:CDS
CATGGTCACGGTCATGATCA+CGG 0.602486 8:-15518721 MsG0880042891.01.T01:CDS
CATGATCACGGCCATGGTCA+CGG 0.602707 8:-15518709 MsG0880042891.01.T01:CDS
AAGAGGAACATAAATGTGCA+AGG 0.606363 8:-15518514 MsG0880042891.01.T01:CDS
ATTCACCATCACGCACATGA+AGG 0.615684 8:-15518583 MsG0880042891.01.T01:CDS
CACGGTCATGACCACGGACA+TGG 0.619001 8:-15518691 MsG0880042891.01.T01:CDS
GAGGAACATAAATGTGCAAG+GGG 0.624945 8:-15518512 MsG0880042891.01.T01:CDS
GATGCTGGAAGGAAGATTTG+TGG 0.628927 8:-15519204 MsG0880042891.01.T01:CDS
GGGGCTTATCTCCATGTACT+CGG 0.633375 8:-15518493 MsG0880042891.01.T01:CDS
CGTGGTCATGACCGTGACCA+TGG 0.633589 8:+15518698 None:intergenic
TGTGATCTTCATGAGTATGA+TGG 0.636300 8:+15518605 None:intergenic
CGTGATCATGACCGTGACCA+TGG 0.646434 8:+15518722 None:intergenic
AAACTGTAAGTCCGTGACTG+TGG 0.653391 8:+15518659 None:intergenic
GTGTTATTAGGTCATGATCA+CGG 0.662294 8:-15518745 MsG0880042891.01.T01:CDS
ATGCTACTCAGCTTGAAAAG+GGG 0.663099 8:-15518291 MsG0880042891.01.T01:CDS
GGTCATCATGGCCACAGTCA+CGG 0.667903 8:-15518670 MsG0880042891.01.T01:CDS
CATGGTCACGGTCATGACCA+CGG 0.670414 8:-15518697 MsG0880042891.01.T01:CDS
ATTGAGTTCCAGAAACACAA+TGG 0.673950 8:+15518023 None:intergenic
TGAGTAGCATCAATCTCGCG+AGG 0.676529 8:+15518304 None:intergenic
TAACACCTTCATGTGCGTGA+TGG 0.678047 8:+15518578 None:intergenic
CCAGCATCTGAGAATCCACA+TGG 0.679240 8:+15519174 None:intergenic
GGCCATGATGACCATGTCCG+TGG 0.689643 8:+15518680 None:intergenic
ATTTGTGGTGAAGCACCATG+TGG 0.697709 8:-15519189 MsG0880042891.01.T01:CDS
CCATTTCTGCATCGGCATCG+CGG 0.700086 8:+15518173 None:intergenic
CAGTCATGAAAATCACACAC+AGG 0.700380 8:+15519088 None:intergenic
GATCTTCATGAGTATGATGG+TGG 0.722381 8:+15518608 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTAGATTTTTATTTTTA+TGG - Chr8:15518193-15518212 MsG0880042891.01.T01:CDS 10.0%
!! TATTATTATTATTATTGCCA+TGG + Chr8:15520133-15520152 None:intergenic 15.0%
!! TTAATTACTTATTCTACTTA+TGG - Chr8:15518666-15518685 MsG0880042891.01.T01:CDS 15.0%
!! TTTCATTAATATATTGCAGA+TGG - Chr8:15518845-15518864 MsG0880042891.01.T01:CDS 20.0%
!!! TTAATTTTTTTTGTGCTTCA+AGG - Chr8:15518082-15518101 MsG0880042891.01.T01:exon 20.0%
!!! TTATTTCTTGAAGATAACAA+CGG - Chr8:15518549-15518568 MsG0880042891.01.T01:CDS 20.0%
! AATGTTCATTATCTTGATCA+AGG - Chr8:15518146-15518165 MsG0880042891.01.T01:CDS 25.0%
! ATAAGTAATTAAACGAAAGC+TGG + Chr8:15518658-15518677 None:intergenic 25.0%
! ATGAACATTAACAAAAAGAG+AGG + Chr8:15518135-15518154 None:intergenic 25.0%
! ATTTGACGAACTATTTGAAA+AGG - Chr8:15518507-15518526 MsG0880042891.01.T01:CDS 25.0%
! CACCGTTTATTAAATTTCAA+TGG + Chr8:15518468-15518487 None:intergenic 25.0%
! CGCCATTGAAATTTAATAAA+CGG - Chr8:15518463-15518482 MsG0880042891.01.T01:CDS 25.0%
! CTTATGGAGAAATATATCTA+TGG - Chr8:15518682-15518701 MsG0880042891.01.T01:CDS 25.0%
! TAGTGTCTATCCAATTAATA+TGG - Chr8:15519234-15519253 MsG0880042891.01.T01:CDS 25.0%
! TGAAATTGAACTGAATCAAT+TGG - Chr8:15518332-15518351 MsG0880042891.01.T01:CDS 25.0%
! TTTGACGAACTATTTGAAAA+GGG - Chr8:15518508-15518527 MsG0880042891.01.T01:CDS 25.0%
!! AAATCAACTATTTTCCATTC+TGG + Chr8:15519713-15519732 None:intergenic 25.0%
!! AATTTGCACTCTATTCTTTT+CGG - Chr8:15519733-15519752 MsG0880042891.01.T01:intron 25.0%
!! ACTTTGAAGAATGTTCATAA+TGG - Chr8:15518247-15518266 MsG0880042891.01.T01:CDS 25.0%
!! TTGAGTGTTAATTCAACTTT+TGG - Chr8:15517988-15518007 MsG0880042891.01.T01:three_prime_UTR 25.0%
!!! TAACATTTTAGAAGTTCTGA+TGG - Chr8:15519790-15519809 MsG0880042891.01.T01:intron 25.0%
!!! TATCTCCTTGTTTTCTTTAT+GGG - Chr8:15519145-15519164 MsG0880042891.01.T01:CDS 25.0%
!!! TTGTTTCTTATGGATTTTGA+AGG - Chr8:15518360-15518379 MsG0880042891.01.T01:CDS 25.0%
!!! TTTTTCAGAATAGAGATTCT+CGG - Chr8:15519206-15519225 MsG0880042891.01.T01:CDS 25.0%
AAGAAAAATCCAAGAAGAAG+AGG - Chr8:15519594-15519613 MsG0880042891.01.T01:intron 30.0%
ATTTATGTTCCTCTTCTTCT+TGG + Chr8:15519606-15519625 None:intergenic 30.0%
CAATCATTACTCCAATACTT+TGG + Chr8:15519667-15519686 None:intergenic 30.0%
CACAAAAACAATAGCAAACA+GGG + Chr8:15518278-15518297 None:intergenic 30.0%
CTCTCATCATAACAATCAAT+AGG + Chr8:15520059-15520078 None:intergenic 30.0%
TCATATGGTATAAACCAGAA+TGG - Chr8:15519696-15519715 MsG0880042891.01.T01:intron 30.0%
TCTTGTGGTTAACATCATTA+TGG - Chr8:15519355-15519374 MsG0880042891.01.T01:intron 30.0%
TTGGCATGATCAATCAAAAA+AGG + Chr8:15518057-15518076 None:intergenic 30.0%
! AAAAAACCATCCACATTTTG+AGG + Chr8:15519311-15519330 None:intergenic 30.0%
! AGTGTTAATTCAACTTTTGG+AGG - Chr8:15517991-15518010 MsG0880042891.01.T01:three_prime_UTR 30.0%
! ATCATTATGGCTGTGTTATT+AGG - Chr8:15519368-15519387 MsG0880042891.01.T01:intron 30.0%
! ATTCTTTTCGGCAATTGTTT+TGG - Chr8:15519745-15519764 MsG0880042891.01.T01:intron 30.0%
! ATTTTTATGGATCCTGTGTT+TGG - Chr8:15518206-15518225 MsG0880042891.01.T01:CDS 30.0%
! CTATTGATTGTTATGATGAG+AGG - Chr8:15520057-15520076 MsG0880042891.01.T01:intron 30.0%
! GTCATGTACAAAGTTTTTGA+TGG - Chr8:15518733-15518752 MsG0880042891.01.T01:CDS 30.0%
! GTGTTAATTCAACTTTTGGA+GGG - Chr8:15517992-15518011 MsG0880042891.01.T01:three_prime_UTR 30.0%
! TTAGACGTTTTACTGGATAA+TGG - Chr8:15518574-15518593 MsG0880042891.01.T01:CDS 30.0%
! TTCTTTTCGGCAATTGTTTT+GGG - Chr8:15519746-15519765 MsG0880042891.01.T01:intron 30.0%
! TTTTTATGGATCCTGTGTTT+GGG - Chr8:15518207-15518226 MsG0880042891.01.T01:CDS 30.0%
!! CAAAGTATTGGAGTAATGAT+TGG - Chr8:15519665-15519684 MsG0880042891.01.T01:intron 30.0%
!! TTCTTTAGAATCGTTAGAGA+TGG + Chr8:15518979-15518998 None:intergenic 30.0%
!!! CTATCTCCTTGTTTTCTTTA+TGG - Chr8:15519144-15519163 MsG0880042891.01.T01:CDS 30.0%
AAGAGGAACATAAATGTGCA+AGG - Chr8:15519611-15519630 MsG0880042891.01.T01:intron 35.0%
AGAGGAACATAAATGTGCAA+GGG - Chr8:15519612-15519631 MsG0880042891.01.T01:intron 35.0%
ATTATCTTGATCAAGGATGC+TGG - Chr8:15518153-15518172 MsG0880042891.01.T01:CDS 35.0%
ATTGAGTTCCAGAAACACAA+TGG + Chr8:15520105-15520124 None:intergenic 35.0%
CAAAAAGAGAGGCAAAAACT+TGG + Chr8:15518124-15518143 None:intergenic 35.0%
CAAAATCTTCCCAACTGTAA+TGG + Chr8:15519909-15519928 None:intergenic 35.0%
CCACAAAAACAATAGCAAAC+AGG + Chr8:15518279-15518298 None:intergenic 35.0%
GCATGATCAATCAAAAAAGG+TGG + Chr8:15518054-15518073 None:intergenic 35.0%
TAAACGAAAGCTGGCAAAAA+AGG + Chr8:15518649-15518668 None:intergenic 35.0%
TACTGTATGCTTCTGTATTC+TGG - Chr8:15518795-15518814 MsG0880042891.01.T01:CDS 35.0%
TGTGATCTTCATGAGTATGA+TGG + Chr8:15519523-15519542 None:intergenic 35.0%
TGTTCATGAGCTTCACATTT+GGG - Chr8:15519883-15519902 MsG0880042891.01.T01:intron 35.0%
! AGTATTGGAGTAATGATTGG+AGG - Chr8:15519668-15519687 MsG0880042891.01.T01:intron 35.0%
! ATGTTTTCAGTTGCTGCATT+TGG - Chr8:15519332-15519351 MsG0880042891.01.T01:intron 35.0%
! GATTTTCATGACTGTTGAAC+TGG - Chr8:15519046-15519065 MsG0880042891.01.T01:CDS 35.0%
! GTGTTATTAGGTCATGATCA+CGG - Chr8:15519380-15519399 MsG0880042891.01.T01:intron 35.0%
!! ATTGGCTGCTTTGTTTCTTA+TGG - Chr8:15518350-15518369 MsG0880042891.01.T01:CDS 35.0%
!! TAATTCAACTTTTGGAGGGT+AGG - Chr8:15517996-15518015 MsG0880042891.01.T01:three_prime_UTR 35.0%
!! TCTTTTGATTCACCGATAAG+TGG + Chr8:15519578-15519597 None:intergenic 35.0%
!!! CCTGTTTGCTATTGTTTTTG+TGG - Chr8:15518276-15518295 MsG0880042891.01.T01:CDS 35.0%
AAGCTGGCAAAAAAGGAGTA+AGG + Chr8:15518642-15518661 None:intergenic 40.0%
AATTAATATGGCTGCTTGCG+GGG - Chr8:15519246-15519265 MsG0880042891.01.T01:CDS 40.0%
ACATTTGGGCCATTACAGTT+GGG - Chr8:15519897-15519916 MsG0880042891.01.T01:intron 40.0%
ACTAGTTGCCATTGTGTTTC+TGG - Chr8:15520094-15520113 MsG0880042891.01.T01:intron 40.0%
ATGCTACTCAGCTTGAAAAG+GGG - Chr8:15519834-15519853 MsG0880042891.01.T01:intron 40.0%
CAATTAATATGGCTGCTTGC+GGG - Chr8:15519245-15519264 MsG0880042891.01.T01:CDS 40.0%
CAGTCATGAAAATCACACAC+AGG + Chr8:15519040-15519059 None:intergenic 40.0%
CCAATTAATATGGCTGCTTG+CGG - Chr8:15519244-15519263 MsG0880042891.01.T01:CDS 40.0%
CTGTTCATGAGCTTCACATT+TGG - Chr8:15519882-15519901 MsG0880042891.01.T01:intron 40.0%
GAGGAACATAAATGTGCAAG+GGG - Chr8:15519613-15519632 MsG0880042891.01.T01:intron 40.0%
GATCTTCATGAGTATGATGG+TGG + Chr8:15519520-15519539 None:intergenic 40.0%
GATGCTACTCAGCTTGAAAA+GGG - Chr8:15519833-15519852 MsG0880042891.01.T01:intron 40.0%
TCAGCTTGAAAAGGGGATAT+TGG - Chr8:15519841-15519860 MsG0880042891.01.T01:intron 40.0%
TGAAAAGGGGATATTGGAGA+TGG - Chr8:15519847-15519866 MsG0880042891.01.T01:intron 40.0%
TGATGCTACTCAGCTTGAAA+AGG - Chr8:15519832-15519851 MsG0880042891.01.T01:intron 40.0%
TGATTCACCGATAAGTGGTT+CGG + Chr8:15519573-15519592 None:intergenic 40.0%
TTAAAACCATGCCCAAACAC+AGG + Chr8:15518221-15518240 None:intergenic 40.0%
TTCATGACTGTTGAACTGGT+TGG - Chr8:15519050-15519069 MsG0880042891.01.T01:CDS 40.0%
TTCGATGCGAAAGCTTATGA+TGG - Chr8:15519007-15519026 MsG0880042891.01.T01:CDS 40.0%
! AACGGTCTTAGACGTTTTAC+TGG - Chr8:15518567-15518586 MsG0880042891.01.T01:CDS 40.0%
! TTCTGAAAAACCCATACGAC+TGG + Chr8:15519196-15519215 None:intergenic 40.0%
!! CTTGTTTTCTTTATGGGCTG+CGG - Chr8:15519151-15519170 MsG0880042891.01.T01:CDS 40.0%
!! GAAGGAGTATTAGTGTCAGA+AGG - Chr8:15518378-15518397 MsG0880042891.01.T01:CDS 40.0%
!! TTGTTTTCTTTATGGGCTGC+GGG - Chr8:15519152-15519171 MsG0880042891.01.T01:CDS 40.0%
AAACTGTAAGTCCGTGACTG+TGG + Chr8:15519469-15519488 None:intergenic 45.0%
AAAGGGGATATTGGAGATGG+AGG - Chr8:15519850-15519869 MsG0880042891.01.T01:intron 45.0%
ACCGGCAATGAGTCTATCAA+TGG + Chr8:15519288-15519307 None:intergenic 45.0%
ATGACTGTTGAACTGGTTGG+TGG - Chr8:15519053-15519072 MsG0880042891.01.T01:CDS 45.0%
ATTAGTGTCAGAAGGCTGTC+TGG - Chr8:15518386-15518405 MsG0880042891.01.T01:CDS 45.0%
ATTCACCATCACGCACATGA+AGG - Chr8:15519542-15519561 MsG0880042891.01.T01:intron 45.0%
ATTGGAGATGGAGGAAGTAG+TGG - Chr8:15519859-15519878 MsG0880042891.01.T01:intron 45.0%
CAAATCTTCCTTCCAGCATC+AGG + Chr8:15518921-15518940 None:intergenic 45.0%
CACATTTGGGCCATTACAGT+TGG - Chr8:15519896-15519915 MsG0880042891.01.T01:intron 45.0%
CCGCAAGCAGCCATATTAAT+TGG + Chr8:15519247-15519266 None:intergenic 45.0%
CGCAGCCCATAAAGAAAACA+AGG + Chr8:15519153-15519172 None:intergenic 45.0%
CTGGAACTCAATTCTCTCCA+TGG - Chr8:15520113-15520132 MsG0880042891.01.T01:intron 45.0%
GATGCTGGAAGGAAGATTTG+TGG - Chr8:15518921-15518940 MsG0880042891.01.T01:CDS 45.0%
GCCATTGATAGACTCATTGC+CGG - Chr8:15519284-15519303 MsG0880042891.01.T01:intron 45.0%
GGCGACTCTATCCAAAGTAT+TGG - Chr8:15519653-15519672 MsG0880042891.01.T01:intron 45.0%
GTCCAAGACCATTTCTGCAT+CGG + Chr8:15519963-15519982 None:intergenic 45.0%
TAACACCTTCATGTGCGTGA+TGG + Chr8:15519550-15519569 None:intergenic 45.0%
TGACTGTTGAACTGGTTGGT+GGG - Chr8:15519054-15519073 MsG0880042891.01.T01:CDS 45.0%
TGATGCTGCACATCTTCTCT+CGG - Chr8:15519106-15519125 MsG0880042891.01.T01:CDS 45.0%
TGATTGGAGGAGCAGTCATA+TGG - Chr8:15519681-15519700 MsG0880042891.01.T01:intron 45.0%
! ATTTGTGGTGAAGCACCATG+TGG - Chr8:15518936-15518955 MsG0880042891.01.T01:CDS 45.0%
! GGTGTTACCGAACCACTTAT+CGG - Chr8:15519563-15519582 MsG0880042891.01.T01:intron 45.0%
! TGCAGAAATGGTCTTGGACA+AGG - Chr8:15519964-15519983 MsG0880042891.01.T01:intron 45.0%
!! ACCATCCACATTTTGAGGAC+CGG + Chr8:15519306-15519325 None:intergenic 45.0%
!! AGTTGCTGCATTTGGTCTTG+TGG - Chr8:15519340-15519359 MsG0880042891.01.T01:intron 45.0%
!! CATCGCGGTTGATTTTCACA+TGG + Chr8:15519940-15519959 None:intergenic 45.0%
!! ACAAAAAAAATTAAAAAAAT+TGG + Chr8:15518076-15518095 None:intergenic 5.0%
AAAAACCCATACGACTGGCG+AGG + Chr8:15519191-15519210 None:intergenic 50.0%
AACGCAGATCTTCCTGATGC+TGG - Chr8:15518906-15518925 MsG0880042891.01.T01:CDS 50.0%
ATGGATCCTGTGTTTGGGCA+TGG - Chr8:15518212-15518231 MsG0880042891.01.T01:CDS 50.0%
CAGATCTTCCTGATGCTGGA+AGG - Chr8:15518910-15518929 MsG0880042891.01.T01:CDS 50.0%
CATGGTCACGGTCATGATCA+CGG - Chr8:15519404-15519423 MsG0880042891.01.T01:intron 50.0%
CATTGCCGGTCCTCAAAATG+TGG - Chr8:15519298-15519317 MsG0880042891.01.T01:intron 50.0%
CCAGCATCTGAGAATCCACA+TGG + Chr8:15518954-15518973 None:intergenic 50.0%
CCATGTGGATTCTCAGATGC+TGG - Chr8:15518951-15518970 MsG0880042891.01.T01:CDS 50.0%
GGGGCTTATCTCCATGTACT+CGG - Chr8:15519632-15519651 MsG0880042891.01.T01:intron 50.0%
TGAGTAGCATCAATCTCGCG+AGG + Chr8:15519824-15519843 None:intergenic 50.0%
TGCCGATGCAGAAATGGTCT+TGG - Chr8:15519958-15519977 MsG0880042891.01.T01:intron 50.0%
TTAGGTCATGATCACGGCCA+TGG - Chr8:15519386-15519405 MsG0880042891.01.T01:intron 50.0%
! TTCTTTATGGGCTGCGGGAT+GGG - Chr8:15519157-15519176 MsG0880042891.01.T01:CDS 50.0%
! TTTCTTTATGGGCTGCGGGA+TGG - Chr8:15519156-15519175 MsG0880042891.01.T01:CDS 50.0%
CATGATCACGGCCATGGTCA+CGG - Chr8:15519392-15519411 MsG0880042891.01.T01:intron 55.0%
CATGGTCACGGTCATGACCA+CGG - Chr8:15519428-15519447 MsG0880042891.01.T01:intron 55.0%
CGTGATCATGACCGTGACCA+TGG + Chr8:15519406-15519425 None:intergenic 55.0%
CTACTCCTCGCCAGTCGTAT+GGG - Chr8:15519183-15519202 MsG0880042891.01.T01:CDS 55.0%
GACCACGGACATGGTCATCA+TGG - Chr8:15519443-15519462 MsG0880042891.01.T01:intron 55.0%
GCCGGTCCTCAAAATGTGGA+TGG - Chr8:15519302-15519321 MsG0880042891.01.T01:intron 55.0%
GGATAGAGTCGCCGAGTACA+TGG + Chr8:15519646-15519665 None:intergenic 55.0%
GGCTGTCTGGACAGCAGTTT+CGG - Chr8:15518399-15518418 MsG0880042891.01.T01:CDS 55.0%
GGTCATCATGGCCACAGTCA+CGG - Chr8:15519455-15519474 MsG0880042891.01.T01:intron 55.0%
! CCATTTCTGCATCGGCATCG+CGG + Chr8:15519955-15519974 None:intergenic 55.0%
ATGCGCACAGCTCTCAGCAC+GGG - Chr8:15518868-15518887 MsG0880042891.01.T01:CDS 60.0%
CACGGTCATGACCACGGACA+TGG - Chr8:15519434-15519453 MsG0880042891.01.T01:intron 60.0%
CACGGTCATGATCACGGCCA+TGG - Chr8:15519410-15519429 MsG0880042891.01.T01:intron 60.0%
CCGCGATGCCGATGCAGAAA+TGG - Chr8:15519952-15519971 MsG0880042891.01.T01:intron 60.0%
CGTGGTCATGACCGTGACCA+TGG + Chr8:15519430-15519449 None:intergenic 60.0%
GATGCGCACAGCTCTCAGCA+CGG - Chr8:15518867-15518886 MsG0880042891.01.T01:CDS 60.0%
GCTACTCCTCGCCAGTCGTA+TGG - Chr8:15519182-15519201 MsG0880042891.01.T01:CDS 60.0%
GGCCATGATGACCATGTCCG+TGG + Chr8:15519448-15519467 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr8 gene 15517955 15520192 15517955 ID=MsG0880042891.01;Name=MsG0880042891.01
Chr8 mRNA 15517955 15520192 15517955 ID=MsG0880042891.01.T01;Parent=MsG0880042891.01;Name=MsG0880042891.01.T01;_AED=0.44;_eAED=0.44;_QI=59|1|1|1|0|0.5|2|144|394
Chr8 exon 15517955 15519283 15517955 ID=MsG0880042891.01.T01:exon:37018;Parent=MsG0880042891.01.T01
Chr8 exon 15520134 15520192 15520134 ID=MsG0880042891.01.T01:exon:37017;Parent=MsG0880042891.01.T01
Chr8 five_prime_UTR 15520134 15520192 15520134 ID=MsG0880042891.01.T01:five_prime_utr;Parent=MsG0880042891.01.T01
Chr8 CDS 15518099 15519283 15518099 ID=MsG0880042891.01.T01:cds;Parent=MsG0880042891.01.T01
Chr8 three_prime_UTR 15517955 15518098 15517955 ID=MsG0880042891.01.T01:three_prime_utr;Parent=MsG0880042891.01.T01
Gene Sequence

>MsG0880042891.01.T01

ATGGATGCGCACAGCTCTCAGCACGGGCAAATTATTGAAATCAACGCAGATCTTCCTGATGCTGGAAGGAAGATTTGTGGTGAAGCACCATGTGGATTCTCAGATGCTGGATCCATCTCTAACGATTCTAAAGAACGTTCAACTTCGATGCGAAAGCTTATGATGGCAGTCATCCTGTGTGTGATTTTCATGACTGTTGAACTGGTTGGTGGGCTCAAAGCAAACAGTCTTGCGATACTGACTGATGCTGCACATCTTCTCTCGGACGTTGCAGCATTTGCTATCTCCTTGTTTTCTTTATGGGCTGCGGGATGGGAAGCTACTCCTCGCCAGTCGTATGGGTTTTTCAGAATAGAGATTCTCGGTGCTTTAGTGTCTATCCAATTAATATGGCTGCTTGCGGGGATTATTGTATATGAAGCCATTGATAGACTCATTGCCGGTCCTCAAAATGTGGATGGTTTTTTAATGTTTTCAGTTGCTGCATTTGGTCTTGTGGTTAACATCATTATGGCTGTGTTATTAGGTCATGATCACGGCCATGGTCACGGTCATGATCACGGCCATGGTCACGGTCATGACCACGGACATGGTCATCATGGCCACAGTCACGGACTTACAGTTTCTACACATGATCTTACAAAAGATGAGCACCACCATCATACTCATGAAGATCACATTCACCATCACGCACATGAAGGTGTTACCGAACCACTTATCGGTGAATCAAAAGAAAAATCCAAGAAGAAGAGGAACATAAATGTGCAAGGGGCTTATCTCCATGTACTCGGCGACTCTATCCAAAGTATTGGAGTAATGATTGGAGGAGCAGTCATATGGTATAAACCAGAATGGAAAATAGTTGATTTAATTTGCACTCTATTCTTTTCGGCAATTGTTTTGGGAACAACTATCAATATGCTGCGTAACATTTTAGAAGTTCTGATGGAGAGTACGCCTCGCGAGATTGATGCTACTCAGCTTGAAAAGGGGATATTGGAGATGGAGGAAGTAGTGGCTGTTCATGAGCTTCACATTTGGGCCATTACAGTTGGGAAGATTTTGTTAGCATGCCATGTGAAAATCAACCGCGATGCCGATGCAGAAATGGTCTTGGACAAGGTTGTTGACTACATCAAAAGAGTTTATAACATTAGTCATGTAACTATTCAAATAGAGCGCTAG

Protein sequence

>MsG0880042891.01.T01

MDAHSSQHGQIIEINADLPDAGRKICGEAPCGFSDAGSISNDSKERSTSMRKLMMAVILCVIFMTVELVGGLKANSLAILTDAAHLLSDVAAFAISLFSLWAAGWEATPRQSYGFFRIEILGALVSIQLIWLLAGIIVYEAIDRLIAGPQNVDGFLMFSVAAFGLVVNIIMAVLLGHDHGHGHGHDHGHGHGHDHGHGHHGHSHGLTVSTHDLTKDEHHHHTHEDHIHHHAHEGVTEPLIGESKEKSKKKRNINVQGAYLHVLGDSIQSIGVMIGGAVIWYKPEWKIVDLICTLFFSAIVLGTTINMLRNILEVLMESTPREIDATQLEKGILEMEEVVAVHELHIWAITVGKILLACHVKINRDADAEMVLDKVVDYIKRVYNISHVTIQIER*