AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0638040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0638040 MtrunA17_Chr4g0021031 95.866 508 17 3 1 508 1 504 0.0 986
Msa0638040 MtrunA17_Chr3g0090001 34.568 324 187 7 180 494 84 391 2.60e-41 152
Msa0638040 MtrunA17_Chr3g0145921 30.897 301 198 6 209 506 278 571 1.99e-40 153
Msa0638040 MtrunA17_Chr7g0264491 31.046 306 199 5 202 503 254 551 5.75e-35 137
Msa0638040 MtrunA17_Chr1g0180881 31.373 306 196 6 193 493 249 545 1.55e-34 136
Msa0638040 MtrunA17_Chr1g0146481 28.671 286 189 5 212 494 263 536 3.40e-24 105
Msa0638040 MtrunA17_Chr3g0126401 29.153 295 193 7 208 497 222 505 5.83e-22 99.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0638040 AT1G64860.1 67.704 514 148 6 1 508 1 502 0.0 679
Msa0638040 AT1G64860.2 66.042 480 145 6 1 474 1 468 0.0 619
Msa0638040 AT1G08540.1 33.871 310 191 7 202 506 269 569 7.58e-44 163
Msa0638040 AT5G13730.1 35.738 305 175 7 197 494 114 404 6.82e-39 147
Msa0638040 AT2G36990.1 31.373 306 198 5 193 494 235 532 1.73e-36 142
Msa0638040 AT5G24120.1 31.419 296 185 7 208 497 225 508 1.50e-24 107
Msa0638040 AT5G24120.3 31.419 296 185 7 208 497 225 508 1.50e-24 107
Msa0638040 AT5G24120.2 31.419 296 185 7 208 497 225 508 1.50e-24 107
Msa0638040 AT3G53920.1 30.508 236 147 7 265 493 332 557 3.62e-22 100
Msa0638040 AT3G53920.2 29.771 131 92 0 213 343 280 410 1.50e-13 72.8

Find 133 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCATGCATCATGTGATTT+TGG 0.161123 4_3:-31550792 Msa0638040:CDS
AGATTTCAACTTATGTTTAT+TGG 0.176571 4_3:-31548824 Msa0638040:CDS
GAAATTGTTCGTCTTTATTA+TGG 0.204119 4_3:-31547126 Msa0638040:CDS
AAACAGTCGCCTCATCATTT+TGG 0.205479 4_3:+31546201 None:intergenic
TGCTCAAAGATATGATAATA+TGG 0.212191 4_3:-31549029 Msa0638040:CDS
ATGGCTACTGCAGCAGTTAT+TGG 0.235829 4_3:-31550879 Msa0638040:CDS
TATCAGGAAGTCAAATTTCT+AGG 0.248354 4_3:+31546355 None:intergenic
CCCTCTCTGAATGGTCTTCC+AGG 0.256681 4_3:-31547991 Msa0638040:CDS
CTTTCCTTTGAGACATATTA+AGG 0.259743 4_3:+31548169 None:intergenic
TATAGAGTGGAAGTTAAATT+TGG 0.261841 4_3:+31551254 None:intergenic
CCCCTGAAAATATTGTCTTT+TGG 0.264741 4_3:-31546284 Msa0638040:three_prime_UTR
TTTCTATAGGGTGGCTTGAT+TGG 0.278153 4_3:-31548891 Msa0638040:intron
TTTCTATAATATCTGAATAA+TGG 0.304580 4_3:+31550820 None:intergenic
TGATTCGGAACAATGGTTTC+AGG 0.310782 4_3:-31550619 Msa0638040:CDS
AAGGTATCTGTGACTTGTTC+TGG 0.322986 4_3:-31550438 Msa0638040:CDS
AACTAATAATGAGAAGAAAA+AGG 0.346613 4_3:+31546016 None:intergenic
AAAATTTGATGGTATAATAA+TGG 0.358175 4_3:-31550898 Msa0638040:exon
TGATAATATGGGTGCTGAAA+TGG 0.358343 4_3:-31549017 Msa0638040:CDS
TTCTGACATGGATTATTCAT+TGG 0.361813 4_3:-31550565 Msa0638040:CDS
GAGAAGTTTGATTCTTCAAA+AGG 0.365966 4_3:-31548852 Msa0638040:CDS
GTAATTGGTTGAAACAGATA+TGG 0.372387 4_3:+31551377 None:intergenic
ATGGAAAGAAGAGATGTAAT+TGG 0.381589 4_3:+31551362 None:intergenic
GGGGAATGCTTCCCTATCTA+AGG 0.388400 4_3:+31548011 None:intergenic
GGGAAGTTTCTGAAAGCAAT+AGG 0.399434 4_3:-31550946 Msa0638040:five_prime_UTR
CAGTTTATTGATAGTATAGT+AGG 0.400561 4_3:-31550921 Msa0638040:five_prime_UTR
TAAAACATGCCGCAAGGAAG+AGG 0.406736 4_3:-31546464 Msa0638040:CDS
AGTGGAAGTTAAATTTGGTT+AGG 0.407779 4_3:+31551259 None:intergenic
AAAATGAATAGATAAAGATA+TGG 0.414596 4_3:+31551343 None:intergenic
AGACGAAAGAGGACGATATG+AGG 0.422735 4_3:-31546327 Msa0638040:three_prime_UTR
AATGGAGTCTTTCATTTGAA+AGG 0.424190 4_3:-31550503 Msa0638040:CDS
TGAAATGGGTGACCTTGTTC+AGG 0.424346 4_3:-31549002 Msa0638040:intron
AGCTGACTTACATCAATAGT+TGG 0.424691 4_3:+31548283 None:intergenic
ATACAATTCTAATGACTTTG+AGG 0.424774 4_3:-31550595 Msa0638040:CDS
TAGTATCACTTTGAGATGTT+AGG 0.430171 4_3:-31546074 Msa0638040:three_prime_UTR
TAGCGCCGTGCATGCTGATT+CGG 0.432238 4_3:-31550634 Msa0638040:CDS
GTGCAGCTGGATAGCTTATT+CGG 0.433130 4_3:-31551147 Msa0638040:five_prime_UTR
TGTTCGTCTTTATTATGGAT+TGG 0.438429 4_3:-31547121 Msa0638040:CDS
GATAATATGGGTGCTGAAAT+GGG 0.453441 4_3:-31549016 Msa0638040:CDS
AAAATTAAATTAAATAGAAA+AGG 0.456293 4_3:+31551317 None:intergenic
CTTTCAGATGGTGGAAAAGT+TGG 0.468943 4_3:+31550702 None:intergenic
AATTTGGTTAGGAGAAAGAA+AGG 0.474659 4_3:+31551270 None:intergenic
ACTTATTCAAAACCGTTTGA+AGG 0.475324 4_3:-31550319 Msa0638040:CDS
GGCTTGATTGGACTACTTCG+TGG 0.478283 4_3:-31548879 Msa0638040:CDS
AAGTGTTGAGTGAGAATTCG+AGG 0.479531 4_3:-31550479 Msa0638040:CDS
TAATTGGTTGAAACAGATAT+GGG 0.480364 4_3:+31551378 None:intergenic
TGTTTATTGGTGGATACGAC+AGG 0.480869 4_3:-31548811 Msa0638040:intron
TTTCAACTTATGTTTATTGG+TGG 0.482222 4_3:-31548821 Msa0638040:CDS
AGTAGATGAGTGGGCTCTAA+AGG 0.485139 4_3:-31547787 Msa0638040:intron
AGAAGTTTGATTCTTCAAAA+GGG 0.485509 4_3:-31548851 Msa0638040:CDS
TTACTTGAATTTCAGACTGA+AGG 0.486903 4_3:-31549194 Msa0638040:intron
TTCAGACTGAAGGAAAGATT+AGG 0.487299 4_3:-31549184 Msa0638040:intron
GATATGGGGACCGGAGTTAG+TGG 0.491043 4_3:+31551393 None:intergenic
GCTCAAAGATATGATAATAT+GGG 0.492997 4_3:-31549028 Msa0638040:CDS
CTTATTCAAAACCGTTTGAA+GGG 0.494758 4_3:-31550318 Msa0638040:CDS
TGCCCGCTCATTTGCATGAG+AGG 0.499729 4_3:-31548357 Msa0638040:CDS
GTTTGTCGAGAGAAAGAGTA+AGG 0.499968 4_3:-31546515 Msa0638040:CDS
GATTCGGAACAATGGTTTCA+GGG 0.500906 4_3:-31550618 Msa0638040:CDS
TGATGAGGCGACTGTTTCCT+AGG 0.505152 4_3:-31546195 Msa0638040:three_prime_UTR
TGATTCTGCTGCCTTTCAGA+TGG 0.506025 4_3:+31550690 None:intergenic
CTTTCACATATCCCTTCAAA+CGG 0.507198 4_3:+31550307 None:intergenic
ATATCAATGTTTCAAAAGCA+TGG 0.511850 4_3:+31546431 None:intergenic
TATTTATTGTTGATATAGAG+TGG 0.513554 4_3:+31551241 None:intergenic
CACTCATCTACTCCATTCCA+TGG 0.516659 4_3:+31547798 None:intergenic
TCAGTCTATCAAGGCACTTA+AGG 0.517482 4_3:-31550670 Msa0638040:CDS
TTTGCTGCAGAAGTCGATGT+TGG 0.520203 4_3:-31550532 Msa0638040:CDS
CATGGGAAGACATTAGTAAA+CGG 0.524317 4_3:-31547083 Msa0638040:intron
AGAGAAAGAGTAAGGCAAGT+TGG 0.524872 4_3:-31546507 Msa0638040:CDS
TTCTGCTGCCTTTCAGATGG+TGG 0.525613 4_3:+31550693 None:intergenic
GCTTGATTGGACTACTTCGT+GGG 0.528031 4_3:-31548878 Msa0638040:CDS
TTTCTCTCTCGCGTTCCACA+AGG 0.530808 4_3:+31547145 None:intergenic
ACGCTATGATGAGTGTCTCC+TGG 0.532432 4_3:+31547973 None:intergenic
GAAGCATTCCCCTCTCTGAA+TGG 0.535106 4_3:-31548000 Msa0638040:CDS
ATTATCATATCTTTGAGCAA+TGG 0.535824 4_3:+31549033 None:intergenic
TGGATAAAGAATGTCTTACA+TGG 0.535990 4_3:-31547101 Msa0638040:CDS
AGTATAGTAGGAAAATTTGA+TGG 0.536272 4_3:-31550909 Msa0638040:five_prime_UTR
ATTTATGCTCATCTAAAGAA+AGG 0.538677 4_3:+31550217 None:intergenic
CTTTAGATGAGCATAAATCC+AGG 0.545580 4_3:-31550212 Msa0638040:intron
AACCTCTCATGCAAATGAGC+GGG 0.548183 4_3:+31548355 None:intergenic
CTCTTGATACAAGTCTTCCT+AGG 0.550932 4_3:+31546178 None:intergenic
AGGAAGATCGCTGCTAAAAG+TGG 0.552288 4_3:-31550381 Msa0638040:CDS
TGCCGCAAGGAAGAGGGAGA+TGG 0.552494 4_3:-31546457 Msa0638040:CDS
ATTTGGTTAGGAGAAAGAAA+GGG 0.553867 4_3:+31551271 None:intergenic
GCAGCAGTTATTGGATTGAG+TGG 0.555881 4_3:-31550870 Msa0638040:CDS
TTATCTGAGAAAATTAAAGC+TGG 0.559702 4_3:-31550240 Msa0638040:CDS
ATTCGAGGAGAGAAAAGATA+CGG 0.560825 4_3:-31550464 Msa0638040:CDS
GCAGCAGAATCAGTCTATCA+AGG 0.560868 4_3:-31550679 Msa0638040:CDS
AACAAAATGAGAACATCCCA+TGG 0.568183 4_3:-31547815 Msa0638040:CDS
AATGAGAACATCCCATGGAA+TGG 0.568965 4_3:-31547810 Msa0638040:CDS
GTTCTGCAGTGATGCAGCTG+AGG 0.571648 4_3:-31550359 Msa0638040:CDS
GATAAAATATAGAAAATGAA+AGG 0.572949 4_3:+31551293 None:intergenic
GCAAGTTGGACTTGTTGCGT+TGG 0.576164 4_3:-31546493 Msa0638040:CDS
TGCATGCTGATTCGGAACAA+TGG 0.577935 4_3:-31550626 Msa0638040:CDS
AAAACATGCCGCAAGGAAGA+GGG 0.578890 4_3:-31546463 Msa0638040:CDS
CTTGTTCTGGAGTGTCTGCA+AGG 0.578924 4_3:-31550425 Msa0638040:CDS
GTTGAAACAGATATGGGGAC+CGG 0.580658 4_3:+31551384 None:intergenic
CTAGGAAGACTTGTATCAAG+AGG 0.583578 4_3:-31546177 Msa0638040:three_prime_UTR
TGAGGTTGAAAGTTCTGACA+TGG 0.586396 4_3:-31550577 Msa0638040:CDS
GACGAAAGAGGACGATATGA+GGG 0.586530 4_3:-31546326 Msa0638040:three_prime_UTR
TAAGCTATCCAGCTGCACAC+TGG 0.586853 4_3:+31551152 None:intergenic
AAAGCCTTAATATGTCTCAA+AGG 0.587061 4_3:-31548173 Msa0638040:CDS
CGAAGTTGCAACTTGATCAT+CGG 0.587519 4_3:+31549150 None:intergenic
AGTCGATGTTGGAAAAGCAA+TGG 0.589446 4_3:-31550521 Msa0638040:CDS
CTTTCTATTCCAAAATGATG+AGG 0.591219 4_3:-31546210 Msa0638040:three_prime_UTR
GAGTATAGACTCGAAGAGAG+AGG 0.594019 4_3:-31548313 Msa0638040:CDS
CGTTTGAAGGGATATGTGAA+AGG 0.601034 4_3:-31550306 Msa0638040:CDS
TGTATATATACAGAACAGAA+AGG 0.601909 4_3:-31546387 Msa0638040:three_prime_UTR
TTGTTCCGAATCAGCATGCA+CGG 0.602330 4_3:+31550629 None:intergenic
TTCCATCTCCCTCTTCCTTG+CGG 0.603171 4_3:+31546455 None:intergenic
ATCTAGTAATAGCAGCAGCA+AGG 0.605734 4_3:-31551184 Msa0638040:five_prime_UTR
AAAGAAGAATGACAATCAAG+AGG 0.607282 4_3:-31550401 Msa0638040:CDS
GAGAGAAAAGATACGGAGGA+AGG 0.610835 4_3:-31550457 Msa0638040:CDS
CCTGGAAGACCATTCAGAGA+GGG 0.620461 4_3:+31547991 None:intergenic
GCATCACACACCACTAACTC+CGG 0.623810 4_3:-31551403 Msa0638040:five_prime_UTR
ACTCATTAATGTGACCCTTG+TGG 0.624531 4_3:-31547160 Msa0638040:CDS
TTCTCTCTCGCGTTCCACAA+GGG 0.627798 4_3:+31547146 None:intergenic
GCAGTTATTGGATTGAGTGG+AGG 0.629684 4_3:-31550867 Msa0638040:CDS
TCTTTATAATCACCTGAACA+AGG 0.630384 4_3:+31548990 None:intergenic
GTTGCAACTTGATCATCGGA+AGG 0.630637 4_3:+31549154 None:intergenic
ATGGAATGGAGTAGATGAGT+GGG 0.631890 4_3:-31547796 Msa0638040:CDS
ACTCATCTACTCCATTCCAT+GGG 0.634946 4_3:+31547799 None:intergenic
CAGCTGGATAGCTTATTCGG+TGG 0.639966 4_3:-31551144 Msa0638040:five_prime_UTR
CTGGAAGACCATTCAGAGAG+GGG 0.641914 4_3:+31547992 None:intergenic
TAACCTCTCATGCAAATGAG+CGG 0.653968 4_3:+31548354 None:intergenic
GGATAAAGAATGTCTTACAT+GGG 0.654591 4_3:-31547100 Msa0638040:CDS
GAAAGTCAGAAATGCTACTG+AGG 0.657628 4_3:-31548151 Msa0638040:intron
AGAAACTAAAACATGCCGCA+AGG 0.670521 4_3:-31546470 Msa0638040:CDS
CATGGAATGGAGTAGATGAG+TGG 0.676637 4_3:-31547797 Msa0638040:CDS
CGAGGAGAGAAAAGATACGG+AGG 0.677037 4_3:-31550461 Msa0638040:CDS
TCCTGGAAGACCATTCAGAG+AGG 0.692795 4_3:+31547990 None:intergenic
AATTGGTTGAAACAGATATG+GGG 0.707906 4_3:+31551379 None:intergenic
TAGTAATAGCAGCAGCAAGG+TGG 0.723641 4_3:-31551181 Msa0638040:five_prime_UTR
CGAGTCTATACTCTGCATTG+CGG 0.732447 4_3:+31548323 None:intergenic
AGGAGGAAGTTGATACTGTG+TGG 0.743332 4_3:+31550767 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATACTCTTTTTTTTTTTTTT+TGG + chr4_3:31549836-31549855 None:intergenic 10.0%
!!! TTATATCAACATTATTATTT+TGG + chr4_3:31550148-31550167 None:intergenic 10.0%
!! AAAATGAATAGATAAAGATA+TGG + chr4_3:31546086-31546105 None:intergenic 15.0%
!! GATAAAATATAGAAAATGAA+AGG + chr4_3:31546136-31546155 None:intergenic 15.0%
!!! AAAATTTGATGGTATAATAA+TGG - chr4_3:31546528-31546547 Msa0638040:intron 15.0%
!! TTTCTATAATATCTGAATAA+TGG + chr4_3:31546609-31546628 None:intergenic 15.0%
!! TTTATCATTATTGTTATCAT+AGG - chr4_3:31547490-31547509 Msa0638040:intron 15.0%
!!! TAGTTTTCTTTTTTAGTTTA+TGG - chr4_3:31547614-31547633 Msa0638040:intron 15.0%
!!! TATTTTAAAGAAACTATTTC+AGG + chr4_3:31548741-31548760 None:intergenic 15.0%
!! ATTATAAAATAGAAGCTATA+TGG + chr4_3:31548783-31548802 None:intergenic 15.0%
!! AAAACAAAAACAAGAAAAAA+TGG + chr4_3:31548901-31548920 None:intergenic 15.0%
!! AAAATTGATGTATAAGAAAT+GGG - chr4_3:31549885-31549904 Msa0638040:intron 15.0%
!! AGTATGTTTAATATAATTTG+TGG + chr4_3:31549922-31549941 None:intergenic 15.0%
!! ACAAATGGTATTAATATTTA+TGG + chr4_3:31550220-31550239 None:intergenic 15.0%
!! TTCAAAATGATTTATGAAAT+TGG - chr4_3:31550524-31550543 Msa0638040:CDS 15.0%
!! TATTTATTGTTGATATAGAG+TGG + chr4_3:31546188-31546207 None:intergenic 20.0%
!! AAAGCTAAAAACAAAGTAAA+TGG + chr4_3:31546386-31546405 None:intergenic 20.0%
!!! TTTACTTTGTTTTTAGCTTT+TGG - chr4_3:31546386-31546405 Msa0638040:three_prime_UTR 20.0%
!! TTCAGTGTAATTACAAATTT+CGG - chr4_3:31547871-31547890 Msa0638040:intron 20.0%
!! TACAATGAAATAATTGCATT+AGG - chr4_3:31547981-31548000 Msa0638040:CDS 20.0%
!! ATAAGATACATAAAGTAACA+TGG + chr4_3:31548108-31548127 None:intergenic 20.0%
!! AGTCAATTTACAAAATTATC+TGG + chr4_3:31548150-31548169 None:intergenic 20.0%
!! AGATTTCAACTTATGTTTAT+TGG - chr4_3:31548602-31548621 Msa0638040:intron 20.0%
!!! GTTTTTGTTTTCATTAGTTT+CGG - chr4_3:31548910-31548929 Msa0638040:intron 20.0%
!! AAAGGTAATAAGCAAAATAT+CGG - chr4_3:31549657-31549676 Msa0638040:intron 20.0%
!! AATTATGTGCGTAAATTTAA+TGG - chr4_3:31549786-31549805 Msa0638040:intron 20.0%
!! CAAAATTGATGTATAAGAAA+TGG - chr4_3:31549884-31549903 Msa0638040:intron 20.0%
!!! TTTGTTTTATGAAAACAATC+AGG - chr4_3:31549943-31549962 Msa0638040:intron 20.0%
!!! TCAGCATTTTTCATATTATT+TGG + chr4_3:31550092-31550111 None:intergenic 20.0%
!! TACCATTTGTAAATATTTAC+AGG - chr4_3:31550230-31550249 Msa0638040:CDS 20.0%
!! TTCCTGTAAATATTTACAAA+TGG + chr4_3:31550235-31550254 None:intergenic 20.0%
!!! TATCATCGTATAATTTTACT+TGG + chr4_3:31550416-31550435 None:intergenic 20.0%
!!! TTGGAAATTTTCTTTTACTT+AGG - chr4_3:31550543-31550562 Msa0638040:CDS 20.0%
!! TTACGTAAAAATTTATGCTA+TGG + chr4_3:31550743-31550762 None:intergenic 20.0%
!!! TGTTTTATCAAAAATGTTGA+AGG - chr4_3:31551173-31551192 Msa0638040:five_prime_UTR 20.0%
!! AACTAATAATGAGAAGAAAA+AGG + chr4_3:31551413-31551432 None:intergenic 20.0%
! TAATTGGTTGAAACAGATAT+GGG + chr4_3:31546051-31546070 None:intergenic 25.0%
! TATAGAGTGGAAGTTAAATT+TGG + chr4_3:31546175-31546194 None:intergenic 25.0%
! ATGGTATATGATATTGTTGT+GGG + chr4_3:31546367-31546386 None:intergenic 25.0%
! AATGGTATATGATATTGTTG+TGG + chr4_3:31546368-31546387 None:intergenic 25.0%
!! CAGTTTATTGATAGTATAGT+AGG - chr4_3:31546505-31546524 Msa0638040:CDS 25.0%
! AGTATAGTAGGAAAATTTGA+TGG - chr4_3:31546517-31546536 Msa0638040:CDS 25.0%
! ATACAATTCTAATGACTTTG+AGG - chr4_3:31546831-31546850 Msa0638040:intron 25.0%
! TTATCTGAGAAAATTAAAGC+TGG - chr4_3:31547186-31547205 Msa0638040:intron 25.0%
! ATTTATGCTCATCTAAAGAA+AGG + chr4_3:31547212-31547231 None:intergenic 25.0%
! CTTCTACAATTACACAATTA+TGG + chr4_3:31547327-31547346 None:intergenic 25.0%
! ATATACTGTTAAGCAATCTT+TGG - chr4_3:31547379-31547398 Msa0638040:intron 25.0%
! ATTGTTATCATAGGTAAAGA+AGG - chr4_3:31547499-31547518 Msa0638040:intron 25.0%
! TTGTTATCATAGGTAAAGAA+GGG - chr4_3:31547500-31547519 Msa0638040:intron 25.0%
! TATGTATCTTATATCGTTTG+AGG - chr4_3:31548116-31548135 Msa0638040:intron 25.0%
! ATGTATCTTATATCGTTTGA+GGG - chr4_3:31548117-31548136 Msa0638040:intron 25.0%
! CAATTTACAAAATTATCTGG+TGG + chr4_3:31548147-31548166 None:intergenic 25.0%
!!! TAAATTGACTTCTTTTCTTG+TGG - chr4_3:31548160-31548179 Msa0638040:CDS 25.0%
! ATTATCATATCTTTGAGCAA+TGG + chr4_3:31548396-31548415 None:intergenic 25.0%
! TGCTCAAAGATATGATAATA+TGG - chr4_3:31548397-31548416 Msa0638040:CDS 25.0%
! GCTCAAAGATATGATAATAT+GGG - chr4_3:31548398-31548417 Msa0638040:CDS 25.0%
! AGAAGTTTGATTCTTCAAAA+GGG - chr4_3:31548575-31548594 Msa0638040:intron 25.0%
! TTTCAACTTATGTTTATTGG+TGG - chr4_3:31548605-31548624 Msa0638040:intron 25.0%
! AATTGTCATAAATTCACCAA+TGG - chr4_3:31548675-31548694 Msa0638040:intron 25.0%
! CTGATTTATTGCAGAAATTA+TGG + chr4_3:31548828-31548847 None:intergenic 25.0%
! TGCAATTCTCTACAAAATAA+GGG + chr4_3:31549232-31549251 None:intergenic 25.0%
! TTGCAATTCTCTACAAAATA+AGG + chr4_3:31549233-31549252 None:intergenic 25.0%
! GATATTACATTAAGTGTATG+TGG + chr4_3:31549328-31549347 None:intergenic 25.0%
!! ATGAGACGATTGATATTTTT+GGG + chr4_3:31549555-31549574 None:intergenic 25.0%
!! AATGAGACGATTGATATTTT+TGG + chr4_3:31549556-31549575 None:intergenic 25.0%
! TTTACGCACATAATTAAAGA+AGG + chr4_3:31549781-31549800 None:intergenic 25.0%
! TGCATATAATCAATATCACT+TGG - chr4_3:31550001-31550020 Msa0638040:intron 25.0%
! ATATTATTTGGCATTCTCAT+GGG + chr4_3:31550080-31550099 None:intergenic 25.0%
! GAAATTGTTCGTCTTTATTA+TGG - chr4_3:31550300-31550319 Msa0638040:CDS 25.0%
! GATAATATCAAGGACTAAAT+TGG + chr4_3:31550571-31550590 None:intergenic 25.0%
! GTTTCTGTAAGATAATATCA+AGG + chr4_3:31550581-31550600 None:intergenic 25.0%
! GACCTTATCAAATACTAAAT+TGG - chr4_3:31550683-31550702 Msa0638040:CDS 25.0%
! ATATCAATGTTTCAAAAGCA+TGG + chr4_3:31550998-31551017 None:intergenic 25.0%
!!! CTTTTGAAACATTGATATGA+TGG - chr4_3:31551000-31551019 Msa0638040:intron 25.0%
! TGTATATATACAGAACAGAA+AGG - chr4_3:31551039-31551058 Msa0638040:intron 25.0%
!! TCCAAAAGACAATATTTTCA+GGG + chr4_3:31551146-31551165 None:intergenic 25.0%
AATTGGTTGAAACAGATATG+GGG + chr4_3:31546050-31546069 None:intergenic 30.0%
GTAATTGGTTGAAACAGATA+TGG + chr4_3:31546052-31546071 None:intergenic 30.0%
ATGGAAAGAAGAGATGTAAT+TGG + chr4_3:31546067-31546086 None:intergenic 30.0%
ATTTGGTTAGGAGAAAGAAA+GGG + chr4_3:31546158-31546177 None:intergenic 30.0%
AATTTGGTTAGGAGAAAGAA+AGG + chr4_3:31546159-31546178 None:intergenic 30.0%
AGTGGAAGTTAAATTTGGTT+AGG + chr4_3:31546170-31546189 None:intergenic 30.0%
! TGCATAGTTGCAACTTTTTA+AGG - chr4_3:31546332-31546351 Msa0638040:three_prime_UTR 30.0%
!! CTTTTTGTTTATCAGAGCTT+GGG - chr4_3:31546460-31546479 Msa0638040:CDS 30.0%
!! ACTATTACAGATTTTGAAGG+AGG + chr4_3:31546679-31546698 None:intergenic 30.0%
! GCAACTATTACAGATTTTGA+AGG + chr4_3:31546682-31546701 None:intergenic 30.0%
! TTCTGACATGGATTATTCAT+TGG - chr4_3:31546861-31546880 Msa0638040:intron 30.0%
AATGGAGTCTTTCATTTGAA+AGG - chr4_3:31546923-31546942 Msa0638040:intron 30.0%
AAAGAAGAATGACAATCAAG+AGG - chr4_3:31547025-31547044 Msa0638040:intron 30.0%
!!! AAACGGTTTTGAATAAGTTC+GGG + chr4_3:31547105-31547124 None:intergenic 30.0%
!!! CAAACGGTTTTGAATAAGTT+CGG + chr4_3:31547106-31547125 None:intergenic 30.0%
ACTTATTCAAAACCGTTTGA+AGG - chr4_3:31547107-31547126 Msa0638040:CDS 30.0%
CTTATTCAAAACCGTTTGAA+GGG - chr4_3:31547108-31547127 Msa0638040:CDS 30.0%
ATTAATCCTACAACTGAATG+TGG - chr4_3:31547460-31547479 Msa0638040:intron 30.0%
! AAGAAGGGTTCTATCATTTT+CGG - chr4_3:31547515-31547534 Msa0638040:intron 30.0%
! AGTGAACTGAACATTTTTGT+AGG - chr4_3:31547644-31547663 Msa0638040:intron 30.0%
ATCAAATATTTGCCTCACAT+TGG - chr4_3:31547718-31547737 Msa0638040:intron 30.0%
GCAATATATTGTTGGAATGA+AGG + chr4_3:31547750-31547769 None:intergenic 30.0%
TCATTCCAACAATATATTGC+TGG - chr4_3:31547750-31547769 Msa0638040:intron 30.0%
ATTGCATTAGGATGTACTAT+AGG - chr4_3:31547993-31548012 Msa0638040:CDS 30.0%
TTGCATTAGGATGTACTATA+GGG - chr4_3:31547994-31548013 Msa0638040:CDS 30.0%
TTACTTGAATTTCAGACTGA+AGG - chr4_3:31548232-31548251 Msa0638040:intron 30.0%
TCTTTATAATCACCTGAACA+AGG + chr4_3:31548439-31548458 None:intergenic 30.0%
GAAGATATGAGGTTAAAACA+TGG + chr4_3:31548465-31548484 None:intergenic 30.0%
AACAAAGCTAAGAAGATATG+AGG + chr4_3:31548476-31548495 None:intergenic 30.0%
!!! ACTCACATTGCTTTTTCTAT+AGG - chr4_3:31548522-31548541 Msa0638040:intron 30.0%
!!! CTCACATTGCTTTTTCTATA+GGG - chr4_3:31548523-31548542 Msa0638040:intron 30.0%
GAGAAGTTTGATTCTTCAAA+AGG - chr4_3:31548574-31548593 Msa0638040:intron 30.0%
TCAGCACAATTATTTAGTGA+CGG + chr4_3:31549003-31549022 None:intergenic 30.0%
! ACTAAATAATTGTGCTGACA+GGG - chr4_3:31549005-31549024 Msa0638040:CDS 30.0%
AAAGCCTTAATATGTCTCAA+AGG - chr4_3:31549253-31549272 Msa0638040:intron 30.0%
!! CTTTCCTTTGAGACATATTA+AGG + chr4_3:31549260-31549279 None:intergenic 30.0%
! CAAAGTTTTCTCCTTAGATA+GGG - chr4_3:31549404-31549423 Msa0638040:intron 30.0%
!! TTTGATATAAAGAGCATTGC+AGG + chr4_3:31549758-31549777 None:intergenic 30.0%
! AAAGAGTATGTTATGACATC+AGG - chr4_3:31549847-31549866 Msa0638040:intron 30.0%
TAATACATAGCTGAACTCTA+TGG - chr4_3:31549968-31549987 Msa0638040:intron 30.0%
CATATTATTTGGCATTCTCA+TGG + chr4_3:31550081-31550100 None:intergenic 30.0%
AAATGCTGAATGAGCAAAAA+AGG - chr4_3:31550103-31550122 Msa0638040:intron 30.0%
TGTTCGTCTTTATTATGGAT+TGG - chr4_3:31550305-31550324 Msa0638040:CDS 30.0%
TGGATAAAGAATGTCTTACA+TGG - chr4_3:31550325-31550344 Msa0638040:CDS 30.0%
GGATAAAGAATGTCTTACAT+GGG - chr4_3:31550326-31550345 Msa0638040:CDS 30.0%
AAAGAAGTAACAAACTGTCA+CGG + chr4_3:31550378-31550397 None:intergenic 30.0%
! TCGTATAATTTTACTTGGCA+AGG + chr4_3:31550411-31550430 None:intergenic 30.0%
ACGATGATACATCATCTTAT+TGG - chr4_3:31550427-31550446 Msa0638040:CDS 30.0%
CGATGATACATCATCTTATT+GGG - chr4_3:31550428-31550447 Msa0638040:CDS 30.0%
GTCTAACACTAACAATTTCA+TGG + chr4_3:31550471-31550490 None:intergenic 30.0%
ATAAGACTAAATTGTCACCT+AGG - chr4_3:31550661-31550680 Msa0638040:CDS 30.0%
TTAGTATTTGATAAGGTCCT+AGG + chr4_3:31550681-31550700 None:intergenic 30.0%
CGCCAATTTAGTATTTGATA+AGG + chr4_3:31550688-31550707 None:intergenic 30.0%
TGTTCAGAATGTACATTTGA+TGG - chr4_3:31550769-31550788 Msa0638040:CDS 30.0%
!! CTAGTTTTCTTCACAAATTG+AGG - chr4_3:31550798-31550817 Msa0638040:CDS 30.0%
TATCAGGAAGTCAAATTTCT+AGG + chr4_3:31551074-31551093 None:intergenic 30.0%
!!! CTCTTTCGTCTATTTTTATC+AGG + chr4_3:31551090-31551109 None:intergenic 30.0%
CTGATAAAAATAGACGAAAG+AGG - chr4_3:31551088-31551107 Msa0638040:intron 30.0%
!! CAAAAGACAATATTTTCAGG+GGG + chr4_3:31551144-31551163 None:intergenic 30.0%
! CCAAAAGACAATATTTTCAG+GGG + chr4_3:31551145-31551164 None:intergenic 30.0%
! CTCCAAAAGACAATATTTTC+AGG + chr4_3:31551147-31551166 None:intergenic 30.0%
CTTTCTATTCCAAAATGATG+AGG - chr4_3:31551216-31551235 Msa0638040:five_prime_UTR 30.0%
!! TAGTATCACTTTGAGATGTT+AGG - chr4_3:31551352-31551371 Msa0638040:five_prime_UTR 30.0%
GTATATGATATTGTTGTGGG+TGG + chr4_3:31546364-31546383 None:intergenic 35.0%
!! GCTTTTTGTTTATCAGAGCT+TGG - chr4_3:31546459-31546478 Msa0638040:CDS 35.0%
! TCTCATGCATCATGTGATTT+TGG - chr4_3:31546634-31546653 Msa0638040:intron 35.0%
ATTCGAGGAGAGAAAAGATA+CGG - chr4_3:31546962-31546981 Msa0638040:intron 35.0%
CTTTCACATATCCCTTCAAA+CGG + chr4_3:31547122-31547141 None:intergenic 35.0%
CTTTAGATGAGCATAAATCC+AGG - chr4_3:31547214-31547233 Msa0638040:intron 35.0%
ATTATGAACACCAACAATGC+AGG + chr4_3:31547246-31547265 None:intergenic 35.0%
CTAATTCCACATTCAGTTGT+AGG + chr4_3:31547469-31547488 None:intergenic 35.0%
! GAACTGAACATTTTTGTAGG+TGG - chr4_3:31547647-31547666 Msa0638040:intron 35.0%
CATAGCCAGCAATATATTGT+TGG + chr4_3:31547758-31547777 None:intergenic 35.0%
TTCAGACTGAAGGAAAGATT+AGG - chr4_3:31548242-31548261 Msa0638040:intron 35.0%
!! TGATAATATGGGTGCTGAAA+TGG - chr4_3:31548409-31548428 Msa0638040:intron 35.0%
!! GATAATATGGGTGCTGAAAT+GGG - chr4_3:31548410-31548429 Msa0638040:intron 35.0%
TAGAAAAAGCAATGTGAGTG+CGG + chr4_3:31548521-31548540 None:intergenic 35.0%
!!! ACATTGCTTTTTCTATAGGG+TGG - chr4_3:31548526-31548545 Msa0638040:intron 35.0%
TAAATTCACCAATGGATGCA+AGG - chr4_3:31548683-31548702 Msa0638040:intron 35.0%
GCAGAAATTATGGCTCAAAA+TGG + chr4_3:31548818-31548837 None:intergenic 35.0%
!!! TGTTTTGAGAAATCTGTGCA+AGG - chr4_3:31548948-31548967 Msa0638040:intron 35.0%
!!! GTTTTGAGAAATCTGTGCAA+GGG - chr4_3:31548949-31548968 Msa0638040:intron 35.0%
! CACTAAATAATTGTGCTGAC+AGG - chr4_3:31549004-31549023 Msa0638040:CDS 35.0%
! AGCTGACTTACATCAATAGT+TGG + chr4_3:31549146-31549165 None:intergenic 35.0%
CGTGTGTATATACATATTGC+AGG - chr4_3:31549374-31549393 Msa0638040:intron 35.0%
! GCAAAGTTTTCTCCTTAGAT+AGG - chr4_3:31549403-31549422 Msa0638040:intron 35.0%
! CTTTTTCTACAAGTCCATCA+AGG - chr4_3:31549491-31549510 Msa0638040:intron 35.0%
AATCCAATGATCTTCCTTGA+TGG + chr4_3:31549508-31549527 None:intergenic 35.0%
AACAAAATGAGAACATCCCA+TGG - chr4_3:31549611-31549630 Msa0638040:intron 35.0%
TTATGCTTTGCAATCAAGAC+AGG + chr4_3:31549690-31549709 None:intergenic 35.0%
!! AAAGAGCATTGCAGGATAAA+AGG + chr4_3:31549750-31549769 None:intergenic 35.0%
CATGGGAAGACATTAGTAAA+CGG - chr4_3:31550343-31550362 Msa0638040:CDS 35.0%
! ATTTTACTTGGCAAGGACAT+TGG + chr4_3:31550404-31550423 None:intergenic 35.0%
TGCTATGGATGAATCAGATA+AGG + chr4_3:31550728-31550747 None:intergenic 35.0%
! TTGTGTTATTCCTACAGGAT+AGG - chr4_3:31550889-31550908 Msa0638040:exon 35.0%
! CCCCTGAAAATATTGTCTTT+TGG - chr4_3:31551142-31551161 Msa0638040:five_prime_UTR 35.0%
ATCTAGTAATAGCAGCAGCA+AGG - chr4_3:31546242-31546261 Msa0638040:three_prime_UTR 40.0%
! GGGAAGTTTCTGAAAGCAAT+AGG - chr4_3:31546480-31546499 Msa0638040:CDS 40.0%
!! CTTTCAGATGGTGGAAAAGT+TGG + chr4_3:31546727-31546746 None:intergenic 40.0%
! CAACTTTTCCACCATCTGAA+AGG - chr4_3:31546725-31546744 Msa0638040:intron 40.0%
! TCAGTCTATCAAGGCACTTA+AGG - chr4_3:31546756-31546775 Msa0638040:intron 40.0%
! TGATTCGGAACAATGGTTTC+AGG - chr4_3:31546807-31546826 Msa0638040:intron 40.0%
GATTCGGAACAATGGTTTCA+GGG - chr4_3:31546808-31546827 Msa0638040:intron 40.0%
! TGAGGTTGAAAGTTCTGACA+TGG - chr4_3:31546849-31546868 Msa0638040:intron 40.0%
AGTCGATGTTGGAAAAGCAA+TGG - chr4_3:31546905-31546924 Msa0638040:intron 40.0%
!! AAGTGTTGAGTGAGAATTCG+AGG - chr4_3:31546947-31546966 Msa0638040:intron 40.0%
!! AAGGTATCTGTGACTTGTTC+TGG - chr4_3:31546988-31547007 Msa0638040:intron 40.0%
CGTTTGAAGGGATATGTGAA+AGG - chr4_3:31547120-31547139 Msa0638040:CDS 40.0%
!! GTCTTCAACATTGACTTTCG+AGG + chr4_3:31547593-31547612 None:intergenic 40.0%
! ACATTTTTGTAGGTGGAGCA+TGG - chr4_3:31547654-31547673 Msa0638040:intron 40.0%
! CATTTTTGTAGGTGGAGCAT+GGG - chr4_3:31547655-31547674 Msa0638040:intron 40.0%
TGAAGGCTAAAACCAATGTG+AGG + chr4_3:31547733-31547752 None:intergenic 40.0%
! ATATTGCTGGCTATGAAGCA+CGG - chr4_3:31547763-31547782 Msa0638040:intron 40.0%
!! TACAAATTTCGGTGTCGTGT+CGG - chr4_3:31547882-31547901 Msa0638040:intron 40.0%
CGAAGTTGCAACTTGATCAT+CGG + chr4_3:31548279-31548298 None:intergenic 40.0%
TTTCTATAGGGTGGCTTGAT+TGG - chr4_3:31548535-31548554 Msa0638040:intron 40.0%
! TGTTTATTGGTGGATACGAC+AGG - chr4_3:31548615-31548634 Msa0638040:intron 40.0%
GCACAATTATTTAGTGACGG+TGG + chr4_3:31549000-31549019 None:intergenic 40.0%
TAACCTCTCATGCAAATGAG+CGG + chr4_3:31549075-31549094 None:intergenic 40.0%
GAAAGTCAGAAATGCTACTG+AGG - chr4_3:31549275-31549294 Msa0638040:intron 40.0%
AGTCCATCAAGGAAGATCAT+TGG - chr4_3:31549502-31549521 Msa0638040:intron 40.0%
AATGAGAACATCCCATGGAA+TGG - chr4_3:31549616-31549635 Msa0638040:intron 40.0%
ACTCATCTACTCCATTCCAT+GGG + chr4_3:31549630-31549649 None:intergenic 40.0%
ATGGAATGGAGTAGATGAGT+GGG - chr4_3:31549630-31549649 Msa0638040:intron 40.0%
TTGATTCCTGAAACCATGAG+AGG - chr4_3:31550048-31550067 Msa0638040:intron 40.0%
ACTCATTAATGTGACCCTTG+TGG - chr4_3:31550266-31550285 Msa0638040:CDS 40.0%
ATTGGCGATTCACTTTCACT+AGG - chr4_3:31550701-31550720 Msa0638040:CDS 40.0%
! GACTCTTGTGTTATTCCTAC+AGG - chr4_3:31550884-31550903 Msa0638040:exon 40.0%
GTTTGTCGAGAGAAAGAGTA+AGG - chr4_3:31550911-31550930 Msa0638040:five_prime_UTR 40.0%
AGAGAAAGAGTAAGGCAAGT+TGG - chr4_3:31550919-31550938 Msa0638040:five_prime_UTR 40.0%
AGAAACTAAAACATGCCGCA+AGG - chr4_3:31550956-31550975 Msa0638040:intron 40.0%
! AAACAGTCGCCTCATCATTT+TGG + chr4_3:31551228-31551247 None:intergenic 40.0%
CTCTTGATACAAGTCTTCCT+AGG + chr4_3:31551251-31551270 None:intergenic 40.0%
CTAGGAAGACTTGTATCAAG+AGG - chr4_3:31551249-31551268 Msa0638040:five_prime_UTR 40.0%
GTTGAAACAGATATGGGGAC+CGG + chr4_3:31546045-31546064 None:intergenic 45.0%
TAGTAATAGCAGCAGCAAGG+TGG - chr4_3:31546245-31546264 Msa0638040:three_prime_UTR 45.0%
GTGCAGCTGGATAGCTTATT+CGG - chr4_3:31546279-31546298 Msa0638040:three_prime_UTR 45.0%
ATGGCTACTGCAGCAGTTAT+TGG - chr4_3:31546547-31546566 Msa0638040:intron 45.0%
GCAGCAGTTATTGGATTGAG+TGG - chr4_3:31546556-31546575 Msa0638040:intron 45.0%
GCAGTTATTGGATTGAGTGG+AGG - chr4_3:31546559-31546578 Msa0638040:intron 45.0%
!! AGGAGGAAGTTGATACTGTG+TGG + chr4_3:31546662-31546681 None:intergenic 45.0%
TGATTCTGCTGCCTTTCAGA+TGG + chr4_3:31546739-31546758 None:intergenic 45.0%
GCAGCAGAATCAGTCTATCA+AGG - chr4_3:31546747-31546766 Msa0638040:intron 45.0%
TTGTTCCGAATCAGCATGCA+CGG + chr4_3:31546800-31546819 None:intergenic 45.0%
!! TGCATGCTGATTCGGAACAA+TGG - chr4_3:31546800-31546819 Msa0638040:intron 45.0%
TTTGCTGCAGAAGTCGATGT+TGG - chr4_3:31546894-31546913 Msa0638040:intron 45.0%
GAGAGAAAAGATACGGAGGA+AGG - chr4_3:31546969-31546988 Msa0638040:intron 45.0%
AGGAAGATCGCTGCTAAAAG+TGG - chr4_3:31547045-31547064 Msa0638040:intron 45.0%
CAACAATGCAGGCATTTACC+TGG + chr4_3:31547235-31547254 None:intergenic 45.0%
CAGGTAAATGCCTGCATTGT+TGG - chr4_3:31547233-31547252 Msa0638040:intron 45.0%
GTCCTTGCTTCATAGATTGC+TGG - chr4_3:31547955-31547974 Msa0638040:intron 45.0%
CACCAGCAATCTATGAAGCA+AGG + chr4_3:31547960-31547979 None:intergenic 45.0%
CTTGCTTCATAGATTGCTGG+TGG - chr4_3:31547958-31547977 Msa0638040:intron 45.0%
GTTGCAACTTGATCATCGGA+AGG + chr4_3:31548275-31548294 None:intergenic 45.0%
TGAAATGGGTGACCTTGTTC+AGG - chr4_3:31548424-31548443 Msa0638040:intron 45.0%
GCTTGATTGGACTACTTCGT+GGG - chr4_3:31548548-31548567 Msa0638040:intron 45.0%
TCTACTGTCCTTGCATCCAT+TGG + chr4_3:31548694-31548713 None:intergenic 45.0%
ATGGATGCAAGGACAGTAGA+TGG - chr4_3:31548694-31548713 Msa0638040:intron 45.0%
TGGATGCAAGGACAGTAGAT+GGG - chr4_3:31548695-31548714 Msa0638040:intron 45.0%
AACCTCTCATGCAAATGAGC+GGG + chr4_3:31549074-31549093 None:intergenic 45.0%
CGAGTCTATACTCTGCATTG+CGG + chr4_3:31549106-31549125 None:intergenic 45.0%
GAGTATAGACTCGAAGAGAG+AGG - chr4_3:31549113-31549132 Msa0638040:CDS 45.0%
CACTCATCTACTCCATTCCA+TGG + chr4_3:31549631-31549650 None:intergenic 45.0%
CATGGAATGGAGTAGATGAG+TGG - chr4_3:31549629-31549648 Msa0638040:intron 45.0%
! AGTAGATGAGTGGGCTCTAA+AGG - chr4_3:31549639-31549658 Msa0638040:intron 45.0%
! TCACTTGGTGAGAGAAGACT+TGG - chr4_3:31550016-31550035 Msa0638040:intron 45.0%
ACGAATCCTCTCATGGTTTC+AGG + chr4_3:31550057-31550076 None:intergenic 45.0%
GCAGTTAGTGTGACACTTTC+AGG + chr4_3:31550838-31550857 None:intergenic 45.0%
TCTCGACAAACCTATCCTGT+AGG + chr4_3:31550902-31550921 None:intergenic 45.0%
TAAAACATGCCGCAAGGAAG+AGG - chr4_3:31550962-31550981 Msa0638040:intron 45.0%
AAAACATGCCGCAAGGAAGA+GGG - chr4_3:31550963-31550982 Msa0638040:intron 45.0%
AGACGAAAGAGGACGATATG+AGG - chr4_3:31551099-31551118 Msa0638040:five_prime_UTR 45.0%
GACGAAAGAGGACGATATGA+GGG - chr4_3:31551100-31551119 Msa0638040:five_prime_UTR 45.0%
!! AAAATTAAATTAAATAGAAA+AGG + chr4_3:31546112-31546131 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTGA+AGG - chr4_3:31547811-31547830 Msa0638040:CDS 5.0%
GCATCACACACCACTAACTC+CGG - chr4_3:31546023-31546042 Msa0638040:three_prime_UTR 50.0%
!!! GGTTTTTTCCAGTGTGCAGC+TGG - chr4_3:31546266-31546285 Msa0638040:three_prime_UTR 50.0%
TAAGCTATCCAGCTGCACAC+TGG + chr4_3:31546277-31546296 None:intergenic 50.0%
CAGCTGGATAGCTTATTCGG+TGG - chr4_3:31546282-31546301 Msa0638040:three_prime_UTR 50.0%
TTCTGCTGCCTTTCAGATGG+TGG + chr4_3:31546736-31546755 None:intergenic 50.0%
CGAGGAGAGAAAAGATACGG+AGG - chr4_3:31546965-31546984 Msa0638040:intron 50.0%
!! CTTGTTCTGGAGTGTCTGCA+AGG - chr4_3:31547001-31547020 Msa0638040:intron 50.0%
CTGGCTATGAAGCACGGATA+CGG - chr4_3:31547769-31547788 Msa0638040:intron 50.0%
ATGAAGCACGGATACGGACA+CGG - chr4_3:31547775-31547794 Msa0638040:intron 50.0%
GCAAGGACACTCCTCGAATT+AGG + chr4_3:31547943-31547962 None:intergenic 50.0%
! TGCGGAGTGTTTGTCAACAG+AGG + chr4_3:31548503-31548522 None:intergenic 50.0%
GGCTTGATTGGACTACTTCG+TGG - chr4_3:31548547-31548566 Msa0638040:intron 50.0%
! ATTGGTGGATACGACAGGTG+AGG - chr4_3:31548620-31548639 Msa0638040:intron 50.0%
GGGGAATGCTTCCCTATCTA+AGG + chr4_3:31549418-31549437 None:intergenic 50.0%
! GAAGCATTCCCCTCTCTGAA+TGG - chr4_3:31549426-31549445 Msa0638040:intron 50.0%
CTGGAAGACCATTCAGAGAG+GGG + chr4_3:31549437-31549456 None:intergenic 50.0%
CCTGGAAGACCATTCAGAGA+GGG + chr4_3:31549438-31549457 None:intergenic 50.0%
TCCTGGAAGACCATTCAGAG+AGG + chr4_3:31549439-31549458 None:intergenic 50.0%
ACGCTATGATGAGTGTCTCC+TGG + chr4_3:31549456-31549475 None:intergenic 50.0%
TCATGGGACGAATCCTCTCA+TGG + chr4_3:31550064-31550083 None:intergenic 50.0%
TTCTCTCTCGCGTTCCACAA+GGG + chr4_3:31550283-31550302 None:intergenic 50.0%
TTTCTCTCTCGCGTTCCACA+AGG + chr4_3:31550284-31550303 None:intergenic 50.0%
!! GCAAGTTGGACTTGTTGCGT+TGG - chr4_3:31550933-31550952 Msa0638040:five_prime_UTR 50.0%
TTCCATCTCCCTCTTCCTTG+CGG + chr4_3:31550974-31550993 None:intergenic 50.0%
TGATGAGGCGACTGTTTCCT+AGG - chr4_3:31551231-31551250 Msa0638040:five_prime_UTR 50.0%
GATATGGGGACCGGAGTTAG+TGG + chr4_3:31546036-31546055 None:intergenic 55.0%
! TAGCGCCGTGCATGCTGATT+CGG - chr4_3:31546792-31546811 Msa0638040:intron 55.0%
GTTCTGCAGTGATGCAGCTG+AGG - chr4_3:31547067-31547086 Msa0638040:intron 55.0%
ACACGACACGTGTTCGACAC+CGG - chr4_3:31547911-31547930 Msa0638040:intron 55.0%
TCCTCGAATTAGGCGTGTCC+CGG + chr4_3:31547933-31547952 None:intergenic 55.0%
TGCCCGCTCATTTGCATGAG+AGG - chr4_3:31549069-31549088 Msa0638040:CDS 55.0%
CCCTCTCTGAATGGTCTTCC+AGG - chr4_3:31549435-31549454 Msa0638040:intron 55.0%
CACGACACGTGTTCGACACC+GGG - chr4_3:31547912-31547931 Msa0638040:intron 60.0%
ACCGGGACACGCCTAATTCG+AGG - chr4_3:31547929-31547948 Msa0638040:intron 60.0%
TGCCGCAAGGAAGAGGGAGA+TGG - chr4_3:31550969-31550988 Msa0638040:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 31546009 31551439 31546009 ID=Msa0638040;Name=Msa0638040
chr4_3 mRNA 31546009 31551439 31546009 ID=Msa0638040-mRNA-1;Parent=Msa0638040;Name=Msa0638040-mRNA-1;_AED=0.04;_eAED=0.04;_QI=417|1|1|1|0.88|0.8|10|425|508
chr4_3 exon 31546009 31546542 31546009 ID=Msa0638040-mRNA-1:exon:7401;Parent=Msa0638040-mRNA-1
chr4_3 exon 31547084 31547196 31547084 ID=Msa0638040-mRNA-1:exon:7400;Parent=Msa0638040-mRNA-1
chr4_3 exon 31547788 31547850 31547788 ID=Msa0638040-mRNA-1:exon:7399;Parent=Msa0638040-mRNA-1
chr4_3 exon 31547975 31548052 31547975 ID=Msa0638040-mRNA-1:exon:7398;Parent=Msa0638040-mRNA-1
chr4_3 exon 31548152 31548205 31548152 ID=Msa0638040-mRNA-1:exon:7397;Parent=Msa0638040-mRNA-1
chr4_3 exon 31548294 31548422 31548294 ID=Msa0638040-mRNA-1:exon:7396;Parent=Msa0638040-mRNA-1
chr4_3 exon 31548812 31548904 31548812 ID=Msa0638040-mRNA-1:exon:7395;Parent=Msa0638040-mRNA-1
chr4_3 exon 31549003 31549201 31549003 ID=Msa0638040-mRNA-1:exon:7394;Parent=Msa0638040-mRNA-1
chr4_3 exon 31550213 31550973 31550213 ID=Msa0638040-mRNA-1:exon:7393;Parent=Msa0638040-mRNA-1
chr4_3 exon 31551095 31551439 31551095 ID=Msa0638040-mRNA-1:exon:7392;Parent=Msa0638040-mRNA-1
chr4_3 five_prime_UTR 31551095 31551439 31551095 ID=Msa0638040-mRNA-1:five_prime_utr;Parent=Msa0638040-mRNA-1
chr4_3 five_prime_UTR 31550902 31550973 31550902 ID=Msa0638040-mRNA-1:five_prime_utr;Parent=Msa0638040-mRNA-1
chr4_3 CDS 31550213 31550901 31550213 ID=Msa0638040-mRNA-1:cds;Parent=Msa0638040-mRNA-1
chr4_3 CDS 31549003 31549201 31549003 ID=Msa0638040-mRNA-1:cds;Parent=Msa0638040-mRNA-1
chr4_3 CDS 31548812 31548904 31548812 ID=Msa0638040-mRNA-1:cds;Parent=Msa0638040-mRNA-1
chr4_3 CDS 31548294 31548422 31548294 ID=Msa0638040-mRNA-1:cds;Parent=Msa0638040-mRNA-1
chr4_3 CDS 31548152 31548205 31548152 ID=Msa0638040-mRNA-1:cds;Parent=Msa0638040-mRNA-1
chr4_3 CDS 31547975 31548052 31547975 ID=Msa0638040-mRNA-1:cds;Parent=Msa0638040-mRNA-1
chr4_3 CDS 31547788 31547850 31547788 ID=Msa0638040-mRNA-1:cds;Parent=Msa0638040-mRNA-1
chr4_3 CDS 31547084 31547196 31547084 ID=Msa0638040-mRNA-1:cds;Parent=Msa0638040-mRNA-1
chr4_3 CDS 31546434 31546542 31546434 ID=Msa0638040-mRNA-1:cds;Parent=Msa0638040-mRNA-1
chr4_3 three_prime_UTR 31546009 31546433 31546009 ID=Msa0638040-mRNA-1:three_prime_utr;Parent=Msa0638040-mRNA-1
Gene Sequence

>Msa0638040

ATGGCTACTGCAGCAGTTATTGGATTGAGTGGAGGAAAGAGACTATTGAGTTCATCTTACCATTATTCAGATATTATAGAAAAGTTTTCTCATGCATCATGTGATTTTGGTTCCACACAGTATCAACTTCCTCCTTCAAAATCTGTAATAGTTGCAAAGAAATCATCAAAATACACTCCAACTTTTCCACCATCTGAAAGGCAGCAGAATCAGTCTATCAAGGCACTTAAGGAACACGTTGTCGATAGCGCCGTGCATGCTGATTCGGAACAATGGTTTCAGGGATACAATTCTAATGACTTTGAGGTTGAAAGTTCTGACATGGATTATTCATTGGACGCGCTTCTTTTGCTGCAGAAGTCGATGTTGGAAAAGCAATGGAGTCTTTCATTTGAAAGGAAAGTGTTGAGTGAGAATTCGAGGAGAGAAAAGATACGGAGGAAGGTATCTGTGACTTGTTCTGGAGTGTCTGCAAGGCAAAGAAGAATGACAATCAAGAGGAAGATCGCTGCTAAAAGTGGTTCTGCAGTGATGCAGCTGAGGTCTACAATCAATCCCGAACTTATTCAAAACCGTTTGAAGGGATATGTGAAAGGTGTCGTGAGTGACGAATTGCTCTCTCATGCTGAAGTTGTAAAGTTATCTGAGAAAATTAAAGCTGGCCTTTCTTTAGATGAGCATAAATCCAGACTGAAGGAAAGATTAGGAAGTGAACCTTCCGATGATCAAGTTGCAACTTCGTTGAAGATTTCTCGAGCTGAACTACGAGCTAAAATAATTGAGTGCTGTTTAGCAAGAGAAAAGTTAACTATGAGCAATGTTCGCTTAGTTTTGTCCATTGCTCAAAGATATGATAATATGGGTGCTGAAATGGGTGACCTTGTTCAGGGTGGCTTGATTGGACTACTTCGTGGGATTGAGAAGTTTGATTCTTCAAAAGGGTTCAAGATTTCAACTTATGTTTATTGGTGGATACGACAGGGTGTTTCAAGAGCTCTAGTTGAGAATTCAAGAACATTAAGATTGCCCGCTCATTTGCATGAGAGGTTATCTCTGATCCGCAATGCAGAGTATAGACTCGAAGAGAGAGGCATCACTCCAACTATTGATAGAATTGCAAAAAGCCTTAATATGTCTCAAAGGAAAGTCAGAAATGCTACTGAGGCTATAAGCAAAGTTTTCTCCTTAGATAGGGAAGCATTCCCCTCTCTGAATGGTCTTCCAGGAGACACTCATCATAGCTTTATTGCAGATAAACAAAATGAGAACATCCCATGGAATGGAGTAGATGAGTGGGCTCTAAAGGAAGAAGTGAACAGACTCATTAATGTGACCCTTGTGGAACGCGAGAGAGAAATTGTTCGTCTTTATTATGGATTGGATAAAGAATGTCTTACATGGGAAGACATTAGTAAACGGATAGGTTTGTCGAGAGAAAGAGTAAGGCAAGTTGGACTTGTTGCGTTGGAGAAACTAAAACATGCCGCAAGGAAGAGGGAGATGGAAGCCATGCTTTTGAAACATTGA

Protein sequence

>Msa0638040

MATAAVIGLSGGKRLLSSSYHYSDIIEKFSHASCDFGSTQYQLPPSKSVIVAKKSSKYTPTFPPSERQQNQSIKALKEHVVDSAVHADSEQWFQGYNSNDFEVESSDMDYSLDALLLLQKSMLEKQWSLSFERKVLSENSRREKIRRKVSVTCSGVSARQRRMTIKRKIAAKSGSAVMQLRSTINPELIQNRLKGYVKGVVSDELLSHAEVVKLSEKIKAGLSLDEHKSRLKERLGSEPSDDQVATSLKISRAELRAKIIECCLAREKLTMSNVRLVLSIAQRYDNMGAEMGDLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPAHLHERLSLIRNAEYRLEERGITPTIDRIAKSLNMSQRKVRNATEAISKVFSLDREAFPSLNGLPGDTHHSFIADKQNENIPWNGVDEWALKEEVNRLINVTLVEREREIVRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH*