AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1336080


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1336080 MtrunA17_Chr7g0270231 96.296 216 8 0 23 238 1 216 2.63e-153 424
Msa1336080 MtrunA17_Chr8g0352991 87.879 132 16 0 23 154 1 132 2.25e-81 240
Msa1336080 MtrunA17_Chr2g0277211 42.949 156 83 3 86 236 68 222 2.24e-30 112
Msa1336080 MtrunA17_Chr2g0298061 40.426 141 82 2 91 230 91 230 4.01e-24 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1336080 AT4G01940.1 67.822 202 55 3 45 238 32 231 4.05e-89 263
Msa1336080 AT5G49940.1 35.897 195 109 5 47 236 51 234 2.25e-26 102
Msa1336080 AT4G25910.1 32.719 217 127 7 34 232 11 226 6.40e-22 90.9
Msa1336080 AT5G49940.2 49.462 93 42 2 91 183 85 172 1.28e-21 89.0

Find 52 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTGCACAATATCTTTAA+TGG 0.141568 tig0000794:-5993 Msa1336080:intergenic
CTCAACCACAACTATGAAAA+TGG 0.150095 tig0000794:+5934 Msa1336080:CDS
CGTGTTCTTAAGGAGAAATT+TGG 0.227866 tig0000794:+5965 Msa1336080:CDS
TTCGTTGGTATTGAACAAAT+TGG 0.356289 tig0000794:-5605 Msa1336080:intergenic
ATCCCGGAGAAGACTGATTC+TGG 0.360883 tig0000794:-5748 Msa1336080:intergenic
AAGGTAACATTGAGAATATC+TGG 0.389748 tig0000794:-7043 Msa1336080:intergenic
GTCGCCATTGATGGAGCTTC+CGG 0.397069 tig0000794:-5575 Msa1336080:intergenic
GGAGTTAGAGTCGCCATTGA+TGG 0.397641 tig0000794:-5584 Msa1336080:intergenic
CTGATTCTGGTTAGCGGTAG+AGG 0.412467 tig0000794:-5735 Msa1336080:intergenic
CATAAGACCCATCATTTGAT+AGG 0.420803 tig0000794:+7203 Msa1336080:intron
GGGAATCGAACGTGTTCTTA+AGG 0.422078 tig0000794:+5955 Msa1336080:CDS
TGATGGAGCTTCCGGAGTTA+TGG 0.424007 tig0000794:-5567 Msa1336080:intergenic
ATTTAAGTCCTATCAAATGA+TGG 0.449168 tig0000794:-7211 Msa1336080:intergenic
TAACCAGAATCAGTCTTCTC+CGG 0.470672 tig0000794:+5745 Msa1336080:CDS
TCAACCACAACTATGAAAAT+GGG 0.480712 tig0000794:+5935 Msa1336080:CDS
GGACCTGAGTCCATTGGATC+AGG 0.493608 tig0000794:+6992 Msa1336080:CDS
AGGTGTTAAAGCTGCGATCA+AGG 0.501612 tig0000794:+7012 Msa1336080:CDS
GATGTTGTATCCGTTGAAAA+CGG 0.506210 tig0000794:+5866 Msa1336080:CDS
TTCATAGTTGTGGTTGAGCT+AGG 0.507201 tig0000794:-5929 Msa1336080:intergenic
ATTCTCAAATTCAGTTTCGT+TGG 0.513374 tig0000794:-5620 Msa1336080:intergenic
AACCAGAATCAGTCTTCTCC+GGG 0.515250 tig0000794:+5746 Msa1336080:CDS
TATGTTGGACCTGAGTCCAT+TGG 0.522225 tig0000794:+6986 Msa1336080:CDS
AGCAGTGAGGTCGAATTTCG+TGG 0.529405 tig0000794:-5780 Msa1336080:intergenic
AACTCCGGAAGCTCCATCAA+TGG 0.535221 tig0000794:+5571 Msa1336080:CDS
TTCGTGGCGGAGTATAATCC+CGG 0.541925 tig0000794:-5764 Msa1336080:intergenic
TATCTTAGTCTATCAATACT+TGG 0.545113 tig0000794:+7306 Msa1336080:three_prime_UTR
AATTGCTACCTAGGTGGAGA+AGG 0.556964 tig0000794:-7062 Msa1336080:intergenic
TTTAAGTCCTATCAAATGAT+GGG 0.557737 tig0000794:-7210 Msa1336080:intergenic
GACTGTGTTGTGGAATATGT+TGG 0.562518 tig0000794:+6971 Msa1336080:CDS
AGCAAGGGAAACAACGGTTG+AGG 0.563035 tig0000794:+6030 Msa1336080:CDS
CTCATTACGCACCATAACTC+CGG 0.565461 tig0000794:+5556 Msa1336080:CDS
TGAAGGTGGTGACTGTGTTG+TGG 0.573198 tig0000794:+6961 Msa1336080:CDS
GTGGTTTCTCTTAAGCTACA+AGG 0.577128 tig0000794:+5890 Msa1336080:CDS
CCTCCGTCAGAGATGAGGTA+AGG 0.579366 tig0000794:-5836 Msa1336080:intergenic
CGTCCTTACCTCATCTCTGA+CGG 0.582206 tig0000794:+5833 Msa1336080:CDS
AGCTTTAACACCTGATCCAA+TGG 0.583998 tig0000794:-7002 Msa1336080:intergenic
ATTGAATTGAATTGCTACCT+AGG 0.588253 tig0000794:-7071 Msa1336080:intergenic
CGTTTCCTCCGTCAGAGATG+AGG 0.588496 tig0000794:-5841 Msa1336080:intergenic
CAATGTTACCTTCTCCACCT+AGG 0.589162 tig0000794:+7054 Msa1336080:CDS
AGAAGACTGATTCTGGTTAG+CGG 0.591848 tig0000794:-5741 Msa1336080:intergenic
GGTTAGCGGTAGAGGATGAA+CGG 0.599940 tig0000794:-5727 Msa1336080:intergenic
TGTTTGATGATGATCAAGCA+AGG 0.620834 tig0000794:+6014 Msa1336080:CDS
GTTTGATGATGATCAAGCAA+GGG 0.625912 tig0000794:+6015 Msa1336080:CDS
CCTTACCTCATCTCTGACGG+AGG 0.627657 tig0000794:+5836 Msa1336080:CDS
TCATCTAGAGATACTGAGAC+CGG 0.630070 tig0000794:+6898 Msa1336080:CDS
ACACCTGATCCAATGGACTC+AGG 0.634250 tig0000794:-6995 Msa1336080:intergenic
GAATTGAATTGCTACCTAGG+TGG 0.663541 tig0000794:-7068 Msa1336080:intergenic
TGATCAAGCAAGGGAAACAA+CGG 0.689446 tig0000794:+6024 Msa1336080:CDS
TGTATCCGTTGAAAACGGCG+TGG 0.712918 tig0000794:+5871 Msa1336080:CDS
AGAGGATGAACGGATTACTG+TGG 0.730832 tig0000794:-5717 None:intergenic
GATCGACGTTTGAAGCAGTG+AGG 0.744018 tig0000794:-5793 None:intergenic
AGTGAGGTCGAATTTCGTGG+CGG 0.769982 tig0000794:-5777 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAACTATTATTTATCTTTTA+TGG + tig0000794:6081-6100 Msa1336080:intron 10.0%
!!! TAACTATTATTTATCTTTTA+TGG + tig0000794:6081-6100 Msa1336080:intron 10.0%
!!! AATGTTTTTATAACCTATAT+TGG + tig0000794:6362-6381 Msa1336080:intron 15.0%
!!! AATGTTTTTATAACCTATAT+TGG + tig0000794:6362-6381 Msa1336080:intron 15.0%
!! ATAGTTAAAGCAAAAAGTAA+GGG - tig0000794:6068-6087 Msa1336080:intergenic 20.0%
!! AATAGTTAAAGCAAAAAGTA+AGG - tig0000794:6069-6088 Msa1336080:intergenic 20.0%
!! ATATTAGTTAACATCATGAA+AGG - tig0000794:6227-6246 Msa1336080:intergenic 20.0%
!! TTGGATAAATAACTTATTTG+CGG + tig0000794:6262-6281 Msa1336080:intron 20.0%
!!! TGATATTGTGAAATTGATTT+TGG - tig0000794:6729-6748 Msa1336080:intergenic 20.0%
!! ATAGTTAAAGCAAAAAGTAA+GGG - tig0000794:6068-6087 Msa1336080:intergenic 20.0%
!! AATAGTTAAAGCAAAAAGTA+AGG - tig0000794:6069-6088 Msa1336080:intergenic 20.0%
!! ATATTAGTTAACATCATGAA+AGG - tig0000794:6227-6246 Msa1336080:intergenic 20.0%
!! TTGGATAAATAACTTATTTG+CGG + tig0000794:6262-6281 Msa1336080:intron 20.0%
!!! TGATATTGTGAAATTGATTT+TGG - tig0000794:6729-6748 Msa1336080:intergenic 20.0%
!! AAAAGCAATTTTCTAATTCG+CGG + tig0000794:5531-5550 Msa1336080:CDS 25.0%
! TAGTTAAAGCAAAAAGTAAG+GGG - tig0000794:6067-6086 Msa1336080:intergenic 25.0%
!! CTTTTATGGTTGTTAATGAT+TGG + tig0000794:6095-6114 Msa1336080:intron 25.0%
! TGTTAACTAATATAGCAACT+AGG + tig0000794:6234-6253 Msa1336080:intron 25.0%
! TGAAACCAAACATAAACTTA+GGG - tig0000794:6484-6503 Msa1336080:intergenic 25.0%
!!! TTCCTTTTTAAGCTAGAAAT+TGG + tig0000794:6599-6618 Msa1336080:intron 25.0%
! TTAGAATCAGTGTATGTTAT+TGG - tig0000794:6785-6804 Msa1336080:intergenic 25.0%
!! ATGAATGTTAGTTGATGTTT+GGG + tig0000794:6850-6869 Msa1336080:intron 25.0%
! TTTAAGTCCTATCAAATGAT+GGG - tig0000794:7213-7232 Msa1336080:intergenic 25.0%
! ATTTAAGTCCTATCAAATGA+TGG - tig0000794:7214-7233 Msa1336080:intergenic 25.0%
! TATCTTAGTCTATCAATACT+TGG + tig0000794:7306-7325 Msa1336080:three_prime_UTR 25.0%
!! AAAAGCAATTTTCTAATTCG+CGG + tig0000794:5531-5550 Msa1336080:CDS 25.0%
! TAGTTAAAGCAAAAAGTAAG+GGG - tig0000794:6067-6086 Msa1336080:intergenic 25.0%
!! CTTTTATGGTTGTTAATGAT+TGG + tig0000794:6095-6114 Msa1336080:intron 25.0%
! TGTTAACTAATATAGCAACT+AGG + tig0000794:6234-6253 Msa1336080:intron 25.0%
! TGAAACCAAACATAAACTTA+GGG - tig0000794:6484-6503 Msa1336080:intergenic 25.0%
!!! TTCCTTTTTAAGCTAGAAAT+TGG + tig0000794:6599-6618 Msa1336080:intron 25.0%
! TTAGAATCAGTGTATGTTAT+TGG - tig0000794:6785-6804 Msa1336080:intergenic 25.0%
!! ATGAATGTTAGTTGATGTTT+GGG + tig0000794:6850-6869 Msa1336080:intron 25.0%
! TTTAAGTCCTATCAAATGAT+GGG - tig0000794:7213-7232 Msa1336080:intergenic 25.0%
! ATTTAAGTCCTATCAAATGA+TGG - tig0000794:7214-7233 Msa1336080:intergenic 25.0%
! TATCTTAGTCTATCAATACT+TGG + tig0000794:7306-7325 Msa1336080:three_prime_UTR 25.0%
! TTCGTTGGTATTGAACAAAT+TGG - tig0000794:5608-5627 Msa1336080:intergenic 30.0%
ATTCTCAAATTCAGTTTCGT+TGG - tig0000794:5623-5642 Msa1336080:intergenic 30.0%
! GAAGTTCTTGAATTTTGCTT+TGG - tig0000794:5695-5714 Msa1336080:intergenic 30.0%
TCAACCACAACTATGAAAAT+GGG + tig0000794:5935-5954 Msa1336080:CDS 30.0%
CACTTGCACAATATCTTTAA+TGG - tig0000794:5996-6015 Msa1336080:intergenic 30.0%
CCTTATAAGTTCTCCAATAT+AGG - tig0000794:6378-6397 Msa1336080:intergenic 30.0%
CCTATATTGGAGAACTTATA+AGG + tig0000794:6375-6394 Msa1336080:intron 30.0%
GTGAAACCAAACATAAACTT+AGG - tig0000794:6485-6504 Msa1336080:intergenic 30.0%
!!! CACACCTTTAAAATCACTTT+TGG - tig0000794:6519-6538 Msa1336080:intergenic 30.0%
!! CAAAAGTGATTTTAAAGGTG+TGG + tig0000794:6517-6536 Msa1336080:intron 30.0%
TAAAAAGGAATCAATTCTGG+AGG - tig0000794:6589-6608 Msa1336080:intergenic 30.0%
GCTTAAAAAGGAATCAATTC+TGG - tig0000794:6592-6611 Msa1336080:intergenic 30.0%
!! CTCCAATTTCTAGCTTAAAA+AGG - tig0000794:6604-6623 Msa1336080:intergenic 30.0%
! TTTGGTTAAAAGTGAGTTGA+AGG - tig0000794:6711-6730 Msa1336080:intergenic 30.0%
! GATGAATGTTAGTTGATGTT+TGG + tig0000794:6849-6868 Msa1336080:intron 30.0%
AGACCGGCAATTAAAAATTA+CGG + tig0000794:6914-6933 Msa1336080:CDS 30.0%
AAGGTAACATTGAGAATATC+TGG - tig0000794:7046-7065 Msa1336080:intergenic 30.0%
ATTGAATTGAATTGCTACCT+AGG - tig0000794:7074-7093 Msa1336080:intergenic 30.0%
TCCTTCTTTCTGAATATAGT+TGG + tig0000794:7166-7185 Msa1336080:intron 30.0%
TCCAACTATATTCAGAAAGA+AGG - tig0000794:7170-7189 Msa1336080:intergenic 30.0%
! TTCGTTGGTATTGAACAAAT+TGG - tig0000794:5608-5627 Msa1336080:intergenic 30.0%
ATTCTCAAATTCAGTTTCGT+TGG - tig0000794:5623-5642 Msa1336080:intergenic 30.0%
! GAAGTTCTTGAATTTTGCTT+TGG - tig0000794:5695-5714 Msa1336080:intergenic 30.0%
TCAACCACAACTATGAAAAT+GGG + tig0000794:5935-5954 Msa1336080:CDS 30.0%
CACTTGCACAATATCTTTAA+TGG - tig0000794:5996-6015 Msa1336080:intergenic 30.0%
CCTTATAAGTTCTCCAATAT+AGG - tig0000794:6378-6397 Msa1336080:intergenic 30.0%
CCTATATTGGAGAACTTATA+AGG + tig0000794:6375-6394 Msa1336080:intron 30.0%
GTGAAACCAAACATAAACTT+AGG - tig0000794:6485-6504 Msa1336080:intergenic 30.0%
!!! CACACCTTTAAAATCACTTT+TGG - tig0000794:6519-6538 Msa1336080:intergenic 30.0%
!! CAAAAGTGATTTTAAAGGTG+TGG + tig0000794:6517-6536 Msa1336080:intron 30.0%
TAAAAAGGAATCAATTCTGG+AGG - tig0000794:6589-6608 Msa1336080:intergenic 30.0%
GCTTAAAAAGGAATCAATTC+TGG - tig0000794:6592-6611 Msa1336080:intergenic 30.0%
!! CTCCAATTTCTAGCTTAAAA+AGG - tig0000794:6604-6623 Msa1336080:intergenic 30.0%
! TTTGGTTAAAAGTGAGTTGA+AGG - tig0000794:6711-6730 Msa1336080:intergenic 30.0%
! GATGAATGTTAGTTGATGTT+TGG + tig0000794:6849-6868 Msa1336080:intron 30.0%
AGACCGGCAATTAAAAATTA+CGG + tig0000794:6914-6933 Msa1336080:CDS 30.0%
AAGGTAACATTGAGAATATC+TGG - tig0000794:7046-7065 Msa1336080:intergenic 30.0%
ATTGAATTGAATTGCTACCT+AGG - tig0000794:7074-7093 Msa1336080:intergenic 30.0%
TCCTTCTTTCTGAATATAGT+TGG + tig0000794:7166-7185 Msa1336080:intron 30.0%
TCCAACTATATTCAGAAAGA+AGG - tig0000794:7170-7189 Msa1336080:intergenic 30.0%
GATGTTGTATCCGTTGAAAA+CGG + tig0000794:5866-5885 Msa1336080:CDS 35.0%
CTCAACCACAACTATGAAAA+TGG + tig0000794:5934-5953 Msa1336080:CDS 35.0%
! GATTCCCATTTTCATAGTTG+TGG - tig0000794:5942-5961 Msa1336080:intergenic 35.0%
CGTGTTCTTAAGGAGAAATT+TGG + tig0000794:5965-5984 Msa1336080:CDS 35.0%
!! TGTTTGATGATGATCAAGCA+AGG + tig0000794:6014-6033 Msa1336080:CDS 35.0%
!! GTTTGATGATGATCAAGCAA+GGG + tig0000794:6015-6034 Msa1336080:CDS 35.0%
ATATAGCAACTAGGTCTGTT+TGG + tig0000794:6243-6262 Msa1336080:intron 35.0%
! ATGTTTGGTTTCACTTCTAG+AGG + tig0000794:6491-6510 Msa1336080:intron 35.0%
! TGTTTGGTTTCACTTCTAGA+GGG + tig0000794:6492-6511 Msa1336080:intron 35.0%
GTTGAAGGTAAACTGAATGA+TGG - tig0000794:6696-6715 Msa1336080:intergenic 35.0%
!! CCTCCGTAATTTTTAATTGC+CGG - tig0000794:6920-6939 Msa1336080:intergenic 35.0%
!! GTGCAAGTTTTATCTGTTGA+AGG + tig0000794:6944-6963 Msa1336080:CDS 35.0%
!! CAAGTTTTATCTGTTGAAGG+TGG + tig0000794:6947-6966 Msa1336080:CDS 35.0%
CATAAGACCCATCATTTGAT+AGG + tig0000794:7203-7222 Msa1336080:intron 35.0%
GATGTTGTATCCGTTGAAAA+CGG + tig0000794:5866-5885 Msa1336080:CDS 35.0%
CTCAACCACAACTATGAAAA+TGG + tig0000794:5934-5953 Msa1336080:CDS 35.0%
! GATTCCCATTTTCATAGTTG+TGG - tig0000794:5942-5961 Msa1336080:intergenic 35.0%
CGTGTTCTTAAGGAGAAATT+TGG + tig0000794:5965-5984 Msa1336080:CDS 35.0%
!! TGTTTGATGATGATCAAGCA+AGG + tig0000794:6014-6033 Msa1336080:CDS 35.0%
!! GTTTGATGATGATCAAGCAA+GGG + tig0000794:6015-6034 Msa1336080:CDS 35.0%
ATATAGCAACTAGGTCTGTT+TGG + tig0000794:6243-6262 Msa1336080:intron 35.0%
! ATGTTTGGTTTCACTTCTAG+AGG + tig0000794:6491-6510 Msa1336080:intron 35.0%
! TGTTTGGTTTCACTTCTAGA+GGG + tig0000794:6492-6511 Msa1336080:intron 35.0%
GTTGAAGGTAAACTGAATGA+TGG - tig0000794:6696-6715 Msa1336080:intergenic 35.0%
!! CCTCCGTAATTTTTAATTGC+CGG - tig0000794:6920-6939 Msa1336080:intergenic 35.0%
!! GTGCAAGTTTTATCTGTTGA+AGG + tig0000794:6944-6963 Msa1336080:CDS 35.0%
!! CAAGTTTTATCTGTTGAAGG+TGG + tig0000794:6947-6966 Msa1336080:CDS 35.0%
CATAAGACCCATCATTTGAT+AGG + tig0000794:7203-7222 Msa1336080:intron 35.0%
! AGAAGACTGATTCTGGTTAG+CGG - tig0000794:5744-5763 Msa1336080:intergenic 40.0%
TAACCAGAATCAGTCTTCTC+CGG + tig0000794:5745-5764 Msa1336080:CDS 40.0%
GTGGTTTCTCTTAAGCTACA+AGG + tig0000794:5890-5909 Msa1336080:CDS 40.0%
TTCATAGTTGTGGTTGAGCT+AGG - tig0000794:5932-5951 Msa1336080:intergenic 40.0%
TGATCAAGCAAGGGAAACAA+CGG + tig0000794:6024-6043 Msa1336080:CDS 40.0%
TCAGATACGCCAATTCAAAC+TGG + tig0000794:6458-6477 Msa1336080:intron 40.0%
AACTTAGGGCCAGTTTGAAT+TGG - tig0000794:6470-6489 Msa1336080:intergenic 40.0%
ACTGGCCCTAAGTTTATGTT+TGG + tig0000794:6476-6495 Msa1336080:intron 40.0%
! GTTTGGTTTCACTTCTAGAG+GGG + tig0000794:6493-6512 Msa1336080:intron 40.0%
! GGGGCCAAAAGTGATTTTAA+AGG + tig0000794:6512-6531 Msa1336080:intron 40.0%
! TGTTAGTTGATGTTTGGGTG+TGG + tig0000794:6855-6874 Msa1336080:intron 40.0%
! GTTAGTTGATGTTTGGGTGT+GGG + tig0000794:6856-6875 Msa1336080:intron 40.0%
!!! TGTTTGGGTGTGGGTTTTTT+AGG + tig0000794:6865-6884 Msa1336080:intron 40.0%
TCATCTAGAGATACTGAGAC+CGG + tig0000794:6898-6917 Msa1336080:CDS 40.0%
CCGGCAATTAAAAATTACGG+AGG + tig0000794:6917-6936 Msa1336080:CDS 40.0%
GACTGTGTTGTGGAATATGT+TGG + tig0000794:6971-6990 Msa1336080:CDS 40.0%
! AGCTTTAACACCTGATCCAA+TGG - tig0000794:7005-7024 Msa1336080:intergenic 40.0%
GAATTGAATTGCTACCTAGG+TGG - tig0000794:7071-7090 Msa1336080:intergenic 40.0%
! AGAAGACTGATTCTGGTTAG+CGG - tig0000794:5744-5763 Msa1336080:intergenic 40.0%
TAACCAGAATCAGTCTTCTC+CGG + tig0000794:5745-5764 Msa1336080:CDS 40.0%
GTGGTTTCTCTTAAGCTACA+AGG + tig0000794:5890-5909 Msa1336080:CDS 40.0%
TTCATAGTTGTGGTTGAGCT+AGG - tig0000794:5932-5951 Msa1336080:intergenic 40.0%
TGATCAAGCAAGGGAAACAA+CGG + tig0000794:6024-6043 Msa1336080:CDS 40.0%
TCAGATACGCCAATTCAAAC+TGG + tig0000794:6458-6477 Msa1336080:intron 40.0%
AACTTAGGGCCAGTTTGAAT+TGG - tig0000794:6470-6489 Msa1336080:intergenic 40.0%
ACTGGCCCTAAGTTTATGTT+TGG + tig0000794:6476-6495 Msa1336080:intron 40.0%
! GTTTGGTTTCACTTCTAGAG+GGG + tig0000794:6493-6512 Msa1336080:intron 40.0%
! GGGGCCAAAAGTGATTTTAA+AGG + tig0000794:6512-6531 Msa1336080:intron 40.0%
! TGTTAGTTGATGTTTGGGTG+TGG + tig0000794:6855-6874 Msa1336080:intron 40.0%
! GTTAGTTGATGTTTGGGTGT+GGG + tig0000794:6856-6875 Msa1336080:intron 40.0%
!!! TGTTTGGGTGTGGGTTTTTT+AGG + tig0000794:6865-6884 Msa1336080:intron 40.0%
TCATCTAGAGATACTGAGAC+CGG + tig0000794:6898-6917 Msa1336080:CDS 40.0%
CCGGCAATTAAAAATTACGG+AGG + tig0000794:6917-6936 Msa1336080:CDS 40.0%
GACTGTGTTGTGGAATATGT+TGG + tig0000794:6971-6990 Msa1336080:CDS 40.0%
! AGCTTTAACACCTGATCCAA+TGG - tig0000794:7005-7024 Msa1336080:intergenic 40.0%
GAATTGAATTGCTACCTAGG+TGG - tig0000794:7071-7090 Msa1336080:intergenic 40.0%
CTCATTACGCACCATAACTC+CGG + tig0000794:5556-5575 Msa1336080:CDS 45.0%
!! AGAGGATGAACGGATTACTG+TGG - tig0000794:5720-5739 Msa1336080:intergenic 45.0%
AACCAGAATCAGTCTTCTCC+GGG + tig0000794:5746-5765 Msa1336080:CDS 45.0%
!! AGAAACCACGCCGTTTTCAA+CGG - tig0000794:5879-5898 Msa1336080:intergenic 45.0%
GGGAATCGAACGTGTTCTTA+AGG + tig0000794:5955-5974 Msa1336080:CDS 45.0%
GAGCTCATCAATTGGCGTTT+GGG - tig0000794:6440-6459 Msa1336080:intergenic 45.0%
TGAGCTCATCAATTGGCGTT+TGG - tig0000794:6441-6460 Msa1336080:intergenic 45.0%
GCGTATCTGAGCTCATCAAT+TGG - tig0000794:6448-6467 Msa1336080:intergenic 45.0%
!!! TTGGGTGTGGGTTTTTTAGG+CGG + tig0000794:6868-6887 Msa1336080:intron 45.0%
TATGTTGGACCTGAGTCCAT+TGG + tig0000794:6986-7005 Msa1336080:CDS 45.0%
AGGTGTTAAAGCTGCGATCA+AGG + tig0000794:7012-7031 Msa1336080:CDS 45.0%
CAATGTTACCTTCTCCACCT+AGG + tig0000794:7054-7073 Msa1336080:CDS 45.0%
AATTGCTACCTAGGTGGAGA+AGG - tig0000794:7065-7084 Msa1336080:intergenic 45.0%
CTCATTACGCACCATAACTC+CGG + tig0000794:5556-5575 Msa1336080:CDS 45.0%
!! AGAGGATGAACGGATTACTG+TGG - tig0000794:5720-5739 Msa1336080:intergenic 45.0%
AACCAGAATCAGTCTTCTCC+GGG + tig0000794:5746-5765 Msa1336080:CDS 45.0%
!! AGAAACCACGCCGTTTTCAA+CGG - tig0000794:5879-5898 Msa1336080:intergenic 45.0%
GGGAATCGAACGTGTTCTTA+AGG + tig0000794:5955-5974 Msa1336080:CDS 45.0%
GAGCTCATCAATTGGCGTTT+GGG - tig0000794:6440-6459 Msa1336080:intergenic 45.0%
TGAGCTCATCAATTGGCGTT+TGG - tig0000794:6441-6460 Msa1336080:intergenic 45.0%
GCGTATCTGAGCTCATCAAT+TGG - tig0000794:6448-6467 Msa1336080:intergenic 45.0%
!!! TTGGGTGTGGGTTTTTTAGG+CGG + tig0000794:6868-6887 Msa1336080:intron 45.0%
TATGTTGGACCTGAGTCCAT+TGG + tig0000794:6986-7005 Msa1336080:CDS 45.0%
AGGTGTTAAAGCTGCGATCA+AGG + tig0000794:7012-7031 Msa1336080:CDS 45.0%
CAATGTTACCTTCTCCACCT+AGG + tig0000794:7054-7073 Msa1336080:CDS 45.0%
AATTGCTACCTAGGTGGAGA+AGG - tig0000794:7065-7084 Msa1336080:intergenic 45.0%
TGATGGAGCTTCCGGAGTTA+TGG - tig0000794:5570-5589 Msa1336080:intergenic 50.0%
AACTCCGGAAGCTCCATCAA+TGG + tig0000794:5571-5590 Msa1336080:CDS 50.0%
GGAGTTAGAGTCGCCATTGA+TGG - tig0000794:5587-5606 Msa1336080:intergenic 50.0%
GGTTAGCGGTAGAGGATGAA+CGG - tig0000794:5730-5749 Msa1336080:intergenic 50.0%
! CTGATTCTGGTTAGCGGTAG+AGG - tig0000794:5738-5757 Msa1336080:intergenic 50.0%
! ATCCCGGAGAAGACTGATTC+TGG - tig0000794:5751-5770 Msa1336080:intergenic 50.0%
! TTCGTGGCGGAGTATAATCC+CGG - tig0000794:5767-5786 Msa1336080:intergenic 50.0%
AGTGAGGTCGAATTTCGTGG+CGG - tig0000794:5780-5799 Msa1336080:intergenic 50.0%
AGCAGTGAGGTCGAATTTCG+TGG - tig0000794:5783-5802 Msa1336080:intergenic 50.0%
! GATCGACGTTTGAAGCAGTG+AGG - tig0000794:5796-5815 Msa1336080:intergenic 50.0%
CGTCCTTACCTCATCTCTGA+CGG + tig0000794:5833-5852 Msa1336080:CDS 50.0%
TGTATCCGTTGAAAACGGCG+TGG + tig0000794:5871-5890 Msa1336080:CDS 50.0%
AGCAAGGGAAACAACGGTTG+AGG + tig0000794:6030-6049 Msa1336080:CDS 50.0%
TGAAGGTGGTGACTGTGTTG+TGG + tig0000794:6961-6980 Msa1336080:CDS 50.0%
! ACACCTGATCCAATGGACTC+AGG - tig0000794:6998-7017 Msa1336080:intergenic 50.0%
TGATGGAGCTTCCGGAGTTA+TGG - tig0000794:5570-5589 Msa1336080:intergenic 50.0%
AACTCCGGAAGCTCCATCAA+TGG + tig0000794:5571-5590 Msa1336080:CDS 50.0%
GGAGTTAGAGTCGCCATTGA+TGG - tig0000794:5587-5606 Msa1336080:intergenic 50.0%
GGTTAGCGGTAGAGGATGAA+CGG - tig0000794:5730-5749 Msa1336080:intergenic 50.0%
! CTGATTCTGGTTAGCGGTAG+AGG - tig0000794:5738-5757 Msa1336080:intergenic 50.0%
! ATCCCGGAGAAGACTGATTC+TGG - tig0000794:5751-5770 Msa1336080:intergenic 50.0%
! TTCGTGGCGGAGTATAATCC+CGG - tig0000794:5767-5786 Msa1336080:intergenic 50.0%
AGTGAGGTCGAATTTCGTGG+CGG - tig0000794:5780-5799 Msa1336080:intergenic 50.0%
AGCAGTGAGGTCGAATTTCG+TGG - tig0000794:5783-5802 Msa1336080:intergenic 50.0%
! GATCGACGTTTGAAGCAGTG+AGG - tig0000794:5796-5815 Msa1336080:intergenic 50.0%
CGTCCTTACCTCATCTCTGA+CGG + tig0000794:5833-5852 Msa1336080:CDS 50.0%
TGTATCCGTTGAAAACGGCG+TGG + tig0000794:5871-5890 Msa1336080:CDS 50.0%
AGCAAGGGAAACAACGGTTG+AGG + tig0000794:6030-6049 Msa1336080:CDS 50.0%
TGAAGGTGGTGACTGTGTTG+TGG + tig0000794:6961-6980 Msa1336080:CDS 50.0%
! ACACCTGATCCAATGGACTC+AGG - tig0000794:6998-7017 Msa1336080:intergenic 50.0%
GTCGCCATTGATGGAGCTTC+CGG - tig0000794:5578-5597 Msa1336080:intergenic 55.0%
CCTCCGTCAGAGATGAGGTA+AGG - tig0000794:5839-5858 Msa1336080:intergenic 55.0%
CCTTACCTCATCTCTGACGG+AGG + tig0000794:5836-5855 Msa1336080:CDS 55.0%
CGTTTCCTCCGTCAGAGATG+AGG - tig0000794:5844-5863 Msa1336080:intergenic 55.0%
GGACCTGAGTCCATTGGATC+AGG + tig0000794:6992-7011 Msa1336080:CDS 55.0%
GTCGCCATTGATGGAGCTTC+CGG - tig0000794:5578-5597 Msa1336080:intergenic 55.0%
CCTCCGTCAGAGATGAGGTA+AGG - tig0000794:5839-5858 Msa1336080:intergenic 55.0%
CCTTACCTCATCTCTGACGG+AGG + tig0000794:5836-5855 Msa1336080:CDS 55.0%
CGTTTCCTCCGTCAGAGATG+AGG - tig0000794:5844-5863 Msa1336080:intergenic 55.0%
GGACCTGAGTCCATTGGATC+AGG + tig0000794:6992-7011 Msa1336080:CDS 55.0%
Chromosome Type Strat End Strand Name
tig0000794 gene 5509 7334 5509 ID=Msa1336080;Name=Msa1336080
tig0000794 mRNA 5509 7334 5509 ID=Msa1336080-mRNA-1;Parent=Msa1336080;Name=Msa1336080-mRNA-1;_AED=0.02;_eAED=0.02;_QI=15|1|1|1|0.5|0.33|3|213|238
tig0000794 exon 5509 6051 5509 ID=Msa1336080-mRNA-1:exon:558;Parent=Msa1336080-mRNA-1
tig0000794 exon 6887 7157 6887 ID=Msa1336080-mRNA-1:exon:559;Parent=Msa1336080-mRNA-1
tig0000794 exon 7204 7334 7204 ID=Msa1336080-mRNA-1:exon:560;Parent=Msa1336080-mRNA-1
tig0000794 five_prime_UTR 5509 5523 5509 ID=Msa1336080-mRNA-1:five_prime_utr;Parent=Msa1336080-mRNA-1
tig0000794 CDS 5524 6051 5524 ID=Msa1336080-mRNA-1:cds;Parent=Msa1336080-mRNA-1
tig0000794 CDS 6887 7075 6887 ID=Msa1336080-mRNA-1:cds;Parent=Msa1336080-mRNA-1
tig0000794 three_prime_UTR 7076 7157 7076 ID=Msa1336080-mRNA-1:three_prime_utr;Parent=Msa1336080-mRNA-1
tig0000794 three_prime_UTR 7204 7334 7204 ID=Msa1336080-mRNA-1:three_prime_utr;Parent=Msa1336080-mRNA-1
Gene Sequence

>Msa1336080

ATGTCAAAAAAGCAATTTTCTAATTCGCGGTGCTCATTACGCACCATAACTCCGGAAGCTCCATCAATGGCGACTCTAACTCCAATTTGTTCAATACCAACGAAACTGAATTTGAGAATGCAACAAAAACAACACAATCTCAATTTCGCACTTTTCAATTTCAAAAATCCAAAGCAAAATTCAAGAACTTCAACCACAGTAATCCGTTCATCCTCTACCGCTAACCAGAATCAGTCTTCTCCGGGATTATACTCCGCCACGAAATTCGACCTCACTGCTTCAAACGTCGATCTCGTTCTCGAAGATGTTCGTCCTTACCTCATCTCTGACGGAGGAAACGTCGATGTTGTATCCGTTGAAAACGGCGTGGTTTCTCTTAAGCTACAAGGTGCATGCGAAAGTTGTCCTAGCTCAACCACAACTATGAAAATGGGAATCGAACGTGTTCTTAAGGAGAAATTTGGAGATTCCATTAAAGATATTGTGCAAGTGTTTGATGATGATCAAGCAAGGGAAACAACGGTTGAGGCGGTGAACAATCATCTAGAGATACTGAGACCGGCAATTAAAAATTACGGAGGTAGTGTGCAAGTTTTATCTGTTGAAGGTGGTGACTGTGTTGTGGAATATGTTGGACCTGAGTCCATTGGATCAGGTGTTAAAGCTGCGATCAAGGAGAAGTTTCCAGATATTCTCAATGTTACCTTCTCCACCTAG

Protein sequence

>Msa1336080

MSKKQFSNSRCSLRTITPEAPSMATLTPICSIPTKLNLRMQQKQHNLNFALFNFKNPKQNSRTSTTVIRSSSTANQNQSSPGLYSATKFDLTASNVDLVLEDVRPYLISDGGNVDVVSVENGVVSLKLQGACESCPSSTTTMKMGIERVLKEKFGDSIKDIVQVFDDDQARETTVEAVNNHLEILRPAIKNYGGSVQVLSVEGGDCVVEYVGPESIGSGVKAAIKEKFPDILNVTFST*