AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0188630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0188630 MtrunA17_Chr2g0277061 93.034 646 9 4 1 646 1 610 0.0 1214
Msa0188630 MtrunA17_Chr8g0385121 62.063 630 196 7 12 638 9 598 0.0 761
Msa0188630 MtrunA17_Chr4g0046841 50.314 636 258 10 12 631 21 614 0.0 604
Msa0188630 MtrunA17_Chr8g0385131 48.815 633 258 7 1 632 1 568 0.0 558
Msa0188630 MtrunA17_Chr8g0377631 43.740 647 293 14 14 628 9 616 2.28e-176 515
Msa0188630 MtrunA17_Chr8g0391931 45.182 633 280 12 13 628 6 588 4.88e-172 503
Msa0188630 MtrunA17_Chr8g0385181 44.708 633 267 11 1 630 1 553 1.50e-168 493
Msa0188630 MtrunA17_Chr3g0122211 41.991 643 301 13 16 628 17 617 2.97e-167 492
Msa0188630 MtrunA17_Chr4g0013011 40.881 636 302 12 8 628 6 582 5.46e-148 441
Msa0188630 MtrunA17_Chr2g0284691 41.653 629 267 12 16 629 22 565 4.12e-146 436
Msa0188630 MtrunA17_Chr8g0385161 45.033 302 110 5 331 632 1 246 7.94e-73 235
Msa0188630 MtrunA17_Chr8g0385171 44.340 318 139 9 11 327 11 291 3.86e-72 235
Msa0188630 MtrunA17_Chr7g0274871 49.007 151 63 4 12 161 126 263 5.03e-34 131
Msa0188630 MtrunA17_Chr8g0385141 55.357 112 48 2 125 234 11 122 6.13e-30 116
Msa0188630 MtrunA17_Chr8g0385151 60.417 48 19 0 281 328 1 48 4.25e-16 72.4
Msa0188630 MtrunA17_Chr7g0274911 46.575 73 31 2 540 609 13 80 4.10e-12 64.3
Msa0188630 MtrunA17_Chr7g0274901 33.913 115 45 2 372 485 1 85 3.37e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0188630 AT4G24290.2 70.494 627 150 3 9 635 7 598 0.0 915
Msa0188630 AT4G24290.3 70.494 627 150 3 9 635 7 598 0.0 915
Msa0188630 AT1G28380.1 50.781 640 260 14 9 634 11 609 0.0 586
Msa0188630 AT4G24290.1 68.263 334 100 2 9 340 7 336 9.83e-164 473
Msa0188630 AT1G14780.1 41.911 649 303 17 14 628 10 618 3.97e-158 469
Msa0188630 AT1G29690.1 40.916 633 257 13 16 628 24 559 1.09e-146 437

Find 197 sgRNAs with CRISPR-Local

Find 467 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATCACATTTGATTAATT+TGG 0.118516 2_1:+3835718 None:intergenic
GATAAGTTGTAAGTTATTTA+AGG 0.192279 2_1:-3830208 Msa0188630:three_prime_UTR
CCAATTACCTCTCTATTAAA+TGG 0.214110 2_1:-3832579 Msa0188630:CDS
AATGGCAGATAAAAGGTTTC+TGG 0.239366 2_1:-3834199 Msa0188630:CDS
TGAAAGAAATGGCAGATAAA+AGG 0.248109 2_1:-3834206 Msa0188630:CDS
TGAAGAGCTCCACCAATTCT+TGG 0.267556 2_1:-3831658 Msa0188630:CDS
TGAGAGTTATTTACTTAGTA+TGG 0.275367 2_1:-3835951 Msa0188630:exon
TATTATTCTCATTATTGATT+TGG 0.277978 2_1:-3829991 Msa0188630:three_prime_UTR
CAATTGCAAGTTGAGAATTA+TGG 0.283102 2_1:-3830885 Msa0188630:CDS
TGGGATGGGTCTCCCGGGCT+AGG 0.283433 2_1:-3830789 Msa0188630:CDS
GACGATCCGCAAACAGTAAT+TGG 0.290437 2_1:-3836231 Msa0188630:five_prime_UTR
ATCTTTACAGTTTAGCTTCA+TGG 0.292509 2_1:-3831556 Msa0188630:CDS
TTTGCTCACATCGTAAATAA+AGG 0.296564 2_1:+3832520 None:intergenic
ACGATATATCTTCTGATATA+AGG 0.297869 2_1:-3835862 Msa0188630:CDS
CCATTTAATAGAGAGGTAAT+TGG 0.300333 2_1:+3832579 None:intergenic
TATAAATTCAGCGGTCTATC+CGG 0.305913 2_1:-3830679 Msa0188630:CDS
GTATTCGTCATCAAGATAAT+TGG 0.311458 2_1:-3830344 Msa0188630:three_prime_UTR
CCCGAGTGGGATGGGTCTCC+CGG 0.314842 2_1:-3830795 Msa0188630:CDS
GATCAGAAGCTGAGCTATAT+TGG 0.322944 2_1:+3834166 None:intergenic
TGTCACTGGAGCAAGACTTT+TGG 0.330179 2_1:-3830559 Msa0188630:CDS
TTGATTAATTTGGAAACATT+TGG 0.342511 2_1:+3835728 None:intergenic
TCTCTATTAAATGGAGTTCC+AGG 0.346369 2_1:-3832570 Msa0188630:CDS
CGCAGGAGACTCCTGGCTAT+TGG 0.347040 2_1:-3830584 Msa0188630:CDS
TTTCCTCACAGTTTGGAATC+AGG 0.347420 2_1:-3832878 Msa0188630:intron
AAAGGCCACCCTACCTGATT+AGG 0.347743 2_1:+3830311 None:intergenic
CCGGTAAATCTTTATTCATC+TGG 0.349002 2_1:-3831507 Msa0188630:CDS
GTGCCCACTGCCTGGGAAGC+TGG 0.351878 2_1:+3831631 None:intergenic
TTTGTTGACTATGATATTAC+CGG 0.352662 2_1:-3830499 Msa0188630:CDS
CCAGATGAATAAAGATTTAC+CGG 0.365909 2_1:+3831507 None:intergenic
AAATTAATCAAATGTGATAA+AGG 0.365999 2_1:-3835716 Msa0188630:CDS
CTTAAATTCTCAACTGTGTT+GGG 0.368805 2_1:-3830837 Msa0188630:CDS
TTATGTGAATAAGAACTTGA+TGG 0.371590 2_1:+3832825 None:intergenic
CCCGGGCTAGGGGCCAAGTC+TGG 0.385188 2_1:-3830777 Msa0188630:CDS
AAGGTGAACGCACCAGGTTC+AGG 0.386131 2_1:-3835697 Msa0188630:CDS
GGATGGGTCTCCCGGGCTAG+GGG 0.386935 2_1:-3830787 Msa0188630:CDS
AGGGAGAGGTTGGGAAAGAA+AGG 0.387741 2_1:-3830370 Msa0188630:three_prime_UTR
TCCAGACTTGGCCCCTAGCC+CGG 0.390185 2_1:+3830776 None:intergenic
GGGATGGGTCTCCCGGGCTA+GGG 0.391858 2_1:-3830788 Msa0188630:CDS
TCTTTACAGTTTAGCTTCAT+GGG 0.397162 2_1:-3831555 Msa0188630:CDS
TAAATCATGCTCGTGTCCTT+TGG 0.399546 2_1:-3831436 Msa0188630:intron
ATCAAGTTCTTATTCACATA+AGG 0.404312 2_1:-3832823 Msa0188630:CDS
GAATTTATATTAACATCTGC+TGG 0.404538 2_1:+3830693 None:intergenic
GCAGGAGACTCCTGGCTATT+GGG 0.407109 2_1:-3830583 Msa0188630:CDS
CCCAGGTTTATCGATACCTT+TGG 0.408636 2_1:-3834330 Msa0188630:intron
TGGAAATTGTAGACGAACTT+TGG 0.409965 2_1:-3829971 Msa0188630:three_prime_UTR
GTGGTTGCAGACCGTTCAAT+TGG 0.415947 2_1:-3832631 Msa0188630:CDS
TTGGGAGCTTGTACGGGAAC+AGG 0.426439 2_1:+3830648 None:intergenic
TAGAAGCTTGGGAGCTTGTA+CGG 0.428330 2_1:+3830641 None:intergenic
TTTGGCACCCATGTTATTGT+TGG 0.433049 2_1:-3834312 Msa0188630:CDS
GATTTAAGTCCATGGGTCTC+TGG 0.433190 2_1:-3830113 Msa0188630:three_prime_UTR
TAAGTTATTTAAGGAGTGTA+GGG 0.433516 2_1:-3830199 Msa0188630:three_prime_UTR
AAAGCTGCTGAGATTGCAAT+TGG 0.433991 2_1:-3835902 Msa0188630:CDS
CCTGGCTATTGGGTTGTCAC+TGG 0.435676 2_1:-3830573 Msa0188630:CDS
GAATACAGGTGCCCACTGCC+TGG 0.436080 2_1:+3831623 None:intergenic
AGCTGACTTTGTTCTTCGTT+AGG 0.437061 2_1:-3830437 Msa0188630:three_prime_UTR
CTTATTAGCCAACACTTCAC+AGG 0.441277 2_1:-3830741 Msa0188630:CDS
TGGTGGAGCTCTTCAATTGG+TGG 0.442263 2_1:+3831666 None:intergenic
ATCTTCCTCTTGGTCCTCAA+TGG 0.443218 2_1:-3831596 Msa0188630:CDS
GTAAGTTATTTAAGGAGTGT+AGG 0.444719 2_1:-3830200 Msa0188630:three_prime_UTR
TCATTCTCGCTTGATTGAGA+TGG 0.449401 2_1:-3835801 Msa0188630:CDS
GTATTCAGTGATCTTCCTCT+TGG 0.451919 2_1:-3831606 Msa0188630:CDS
CCAGACTTGGCCCCTAGCCC+GGG 0.452765 2_1:+3830777 None:intergenic
TTGACTGGCAAAATTCCCTC+AGG 0.453374 2_1:-3835511 Msa0188630:CDS
AATCAGGAGTTGTCTTTGAC+TGG 0.453791 2_1:-3835526 Msa0188630:CDS
CTCAACTGTGTTGGGAGCTA+AGG 0.454561 2_1:-3830829 Msa0188630:CDS
CTCATAGAATCTCTTATCAT+AGG 0.457958 2_1:+3830989 None:intergenic
ATGTTATAACAGGTTGATGT+AGG 0.461015 2_1:-3831152 Msa0188630:intron
GGTCTCCGTCTCTATCTAGA+AGG 0.461252 2_1:-3831113 Msa0188630:CDS
CCCATCAAAAGCAAGGGTCT+TGG 0.462275 2_1:+3835432 None:intergenic
AATTGGTGGAGCTCTTCAAT+TGG 0.463212 2_1:+3831663 None:intergenic
GAGAGGTTGGGAAAGAAAGG+AGG 0.467042 2_1:-3830367 Msa0188630:three_prime_UTR
CTCAACTTGCAATTGTGCTC+CGG 0.467644 2_1:+3830893 None:intergenic
GATGACCGAGCAGTTCAATC+AGG 0.469858 2_1:-3835542 Msa0188630:CDS
ACTTAAATTCTCAACTGTGT+TGG 0.471471 2_1:-3830838 Msa0188630:CDS
GAGGAGCTTTCAATAGTAAC+CGG 0.473360 2_1:-3830912 Msa0188630:CDS
TTGAAGAGATTGATGTGAAG+GGG 0.474306 2_1:-3830231 Msa0188630:three_prime_UTR
CTTTATTCATCTGGACGTCT+AGG 0.476189 2_1:-3831498 Msa0188630:CDS
ATAAATTCAGCGGTCTATCC+GGG 0.477465 2_1:-3830678 Msa0188630:CDS
GTGCAGCCAATTACTGTTTG+CGG 0.477899 2_1:+3836225 None:intergenic
TCATGTGTGCACTGCTCCTG+TGG 0.477974 2_1:-3830943 Msa0188630:CDS
TCTTGGAATTCCAGCTTCCC+AGG 0.479841 2_1:-3831641 Msa0188630:CDS
AGCAACTTTCATATTTAACT+TGG 0.479983 2_1:-3829891 Msa0188630:three_prime_UTR
GAACTTTGGTGATCAAGAAA+TGG 0.480674 2_1:-3829957 Msa0188630:three_prime_UTR
CCCGGGAGACCCATCCCACT+CGG 0.481170 2_1:+3830794 None:intergenic
GAAGCTGGAATTCCAAGAAT+TGG 0.481340 2_1:+3831646 None:intergenic
CTAGGTATTCAGTGGCAGAC+TGG 0.482502 2_1:-3831480 Msa0188630:CDS
AGAAAGCTGTTCCATCATCA+TGG 0.488153 2_1:-3835345 Msa0188630:CDS
TAGAGAGGTAATTGGAATGA+AGG 0.488757 2_1:+3832587 None:intergenic
AATTCCAGCTTCCCAGGCAG+TGG 0.490270 2_1:-3831635 Msa0188630:CDS
GGGATGAAAGGTGTTGCATA+TGG 0.493225 2_1:+3831066 None:intergenic
AGAAGCTTGGGAGCTTGTAC+GGG 0.496532 2_1:+3830642 None:intergenic
CACTGCTCCTGTGGAATCTG+AGG 0.499061 2_1:-3830934 Msa0188630:CDS
TTAAATGGAGTTCCAGGGAG+TGG 0.502695 2_1:-3832564 Msa0188630:CDS
AACAGGTTGATGTAGGTAAG+AGG 0.504904 2_1:-3831145 Msa0188630:intron
TCTGCTGATGAAGGCAAGAA+AGG 0.505394 2_1:+3830414 None:intergenic
AAGGACATTGAGATCACATC+AGG 0.507817 2_1:+3832606 None:intergenic
GTGATAAAGGTGAACGCACC+AGG 0.509935 2_1:-3835703 Msa0188630:CDS
CATTTGGATCATCTTCAAGC+TGG 0.510901 2_1:+3831030 None:intergenic
TAAAACATCCCGAGTGGGAT+GGG 0.512771 2_1:-3830803 Msa0188630:CDS
GATTCTATGAGAAGGTTCAA+TGG 0.513867 2_1:-3830977 Msa0188630:CDS
TGTTATTGTTGGTATGAAGA+TGG 0.520317 2_1:-3834301 Msa0188630:CDS
GACTAGCTGATTTAAGTCCA+TGG 0.523888 2_1:-3830121 Msa0188630:three_prime_UTR
TGAAGAGATTGATGTGAAGG+GGG 0.525146 2_1:-3830230 Msa0188630:three_prime_UTR
AGTTTAGCTTCATGGGGCCA+AGG 0.525974 2_1:-3831548 Msa0188630:CDS
ATGGTGTTCACGTAGAGCCT+TGG 0.526771 2_1:+3831531 None:intergenic
AACAATAACATGGGTGCCAA+AGG 0.530256 2_1:+3834314 None:intergenic
TTTGAAGAGATTGATGTGAA+GGG 0.530866 2_1:-3830232 Msa0188630:three_prime_UTR
GTAGGTAAGAGGCCAGTGAC+TGG 0.531568 2_1:-3831134 Msa0188630:CDS
AGAGGTTGGGAAAGAAAGGA+GGG 0.531631 2_1:-3830366 Msa0188630:three_prime_UTR
ACTACATTAGAGATCTATGT+TGG 0.536387 2_1:-3829931 Msa0188630:three_prime_UTR
AGAGGACCGCAGGAGACTCC+TGG 0.540384 2_1:-3830591 Msa0188630:CDS
TCAACTCACCTTGCTAATGC+AGG 0.543651 2_1:+3835316 None:intergenic
GCAATTGGATCCATTGGTCG+TGG 0.547894 2_1:-3835887 Msa0188630:CDS
CCGAGTGGGATGGGTCTCCC+GGG 0.548033 2_1:-3830794 Msa0188630:CDS
AATACAGGTGCCCACTGCCT+GGG 0.548056 2_1:+3831624 None:intergenic
TGAATAAAGATTTACCGGTA+TGG 0.549065 2_1:+3831512 None:intergenic
ACATCTGCTGGACGAGGAGG+CGG 0.549259 2_1:+3830705 None:intergenic
AGCTCCTCCTCAGATTCCAC+AGG 0.551132 2_1:+3830927 None:intergenic
ATATTAACATCTGCTGGACG+AGG 0.551402 2_1:+3830699 None:intergenic
AGCTGAGCTATATTGGCCAT+TGG 0.551551 2_1:+3834173 None:intergenic
GAGCTCCGTTGCTTCCATTG+AGG 0.553578 2_1:+3831582 None:intergenic
GAGATTGCAATTGGATCCAT+TGG 0.554473 2_1:-3835893 Msa0188630:CDS
ACGGGAACAGGAGGGCCGCC+CGG 0.555975 2_1:+3830660 None:intergenic
GCAGGTGGGTCCCATGATGA+TGG 0.556483 2_1:+3835334 None:intergenic
ACACTTAGTTCTGCTGATGA+AGG 0.557606 2_1:+3830405 None:intergenic
TCTTACCTTCTAGATAGAGA+CGG 0.557827 2_1:+3831108 None:intergenic
CCAGTGACAACCCAATAGCC+AGG 0.559250 2_1:+3830573 None:intergenic
AACTGTGTTGGGAGCTAAGG+AGG 0.560977 2_1:-3830826 Msa0188630:CDS
GTAAATAAAGGTTTATAGCA+TGG 0.562633 2_1:+3832532 None:intergenic
AGATGTAATATATTTAAAGC+AGG 0.563749 2_1:-3834271 Msa0188630:CDS
TGGCTCAAGAATCCACTCCC+TGG 0.564442 2_1:+3832552 None:intergenic
AGAGGAAGATCACTGAATAC+AGG 0.565542 2_1:+3831609 None:intergenic
ACTAGCTGATTTAAGTCCAT+GGG 0.565602 2_1:-3830120 Msa0188630:three_prime_UTR
GCTGGAATTCCAAGAATTGG+TGG 0.566479 2_1:+3831649 None:intergenic
GGAGCTTGTACGGGAACAGG+AGG 0.569208 2_1:+3830651 None:intergenic
CAAAACATCAGACCTGAACC+TGG 0.572306 2_1:+3835685 None:intergenic
GTTATTGTTGGTATGAAGAT+GGG 0.573121 2_1:-3834300 Msa0188630:CDS
TTATTAGCCAACACTTCACA+GGG 0.577018 2_1:-3830740 Msa0188630:CDS
TAGAAGGTAAGAAAAGCAAT+CGG 0.578082 2_1:-3831097 Msa0188630:CDS
ATTGAATTGAAAAGCCCTGA+GGG 0.579139 2_1:+3835496 None:intergenic
ATTCCAGCTTCCCAGGCAGT+GGG 0.581178 2_1:-3831634 Msa0188630:CDS
TTAACACCCCATCAAAAGCA+AGG 0.584296 2_1:+3835425 None:intergenic
AAAATTTATCGCATAATCAG+TGG 0.585243 2_1:-3832650 Msa0188630:CDS
TGAGATGACTAGAGGACCGC+AGG 0.585822 2_1:-3830601 Msa0188630:CDS
TGACTGGCAAAATTCCCTCA+GGG 0.586502 2_1:-3835510 Msa0188630:CDS
TCTTCATACCAACAATAACA+TGG 0.586936 2_1:+3834304 None:intergenic
TGAAGATAATGATGTAAGAG+AGG 0.587582 2_1:-3835777 Msa0188630:CDS
CCGGGAGACCCATCCCACTC+GGG 0.589214 2_1:+3830795 None:intergenic
ACTCACCTTGCTAATGCAGG+TGG 0.589366 2_1:+3835319 None:intergenic
GAAAGCTGTTCCATCATCAT+GGG 0.590835 2_1:-3835344 Msa0188630:CDS
TTGGTCCTCAATGGAAGCAA+CGG 0.591455 2_1:-3831587 Msa0188630:CDS
CACATCAGGCTCCAATTGAA+CGG 0.591595 2_1:+3832620 None:intergenic
TGCTCCTGTGGAATCTGAGG+AGG 0.592386 2_1:-3830931 Msa0188630:CDS
GTAAAACATCCCGAGTGGGA+TGG 0.595842 2_1:-3830804 Msa0188630:CDS
TATATCGTATCCACGACCAA+TGG 0.596383 2_1:+3835877 None:intergenic
GAAAAGCCCCTGTGAAGTGT+TGG 0.596845 2_1:+3830733 None:intergenic
CTCTATTAAATGGAGTTCCA+GGG 0.597190 2_1:-3832569 Msa0188630:CDS
ACTGATCTAATCAAAACAAG+AGG 0.597284 2_1:+3830079 None:intergenic
AAGTTCTTATTCACATAAGG+AGG 0.597395 2_1:-3832820 Msa0188630:intron
TAGAGACGGAGACCAGTCAC+TGG 0.600119 2_1:+3831122 None:intergenic
CTTCTAGTCGAATATACTCT+CGG 0.601417 2_1:-3829855 None:intergenic
CTTTACAGTTTAGCTTCATG+GGG 0.605349 2_1:-3831554 Msa0188630:CDS
CAACTCCTGATTGAACTGCT+CGG 0.606307 2_1:+3835537 None:intergenic
TGGAACTCCATTTAATAGAG+AGG 0.607859 2_1:+3832572 None:intergenic
AGTGGATATAAGTCCAGACT+TGG 0.608342 2_1:+3830764 None:intergenic
GATCATTCGCCAGAGACCCA+TGG 0.613353 2_1:+3830104 None:intergenic
AAGTTATTTAAGGAGTGTAG+GGG 0.614978 2_1:-3830198 Msa0188630:three_prime_UTR
AGGTAAGAAAAGCAATCGGT+TGG 0.619371 2_1:-3831093 Msa0188630:CDS
TGAAAGGTGTTGCATATGGA+TGG 0.621383 2_1:+3831070 None:intergenic
GGGACCCACCTGCATTAGCA+AGG 0.622805 2_1:-3835324 Msa0188630:intron
TGATAAGAGATTCTATGAGA+AGG 0.622926 2_1:-3830985 Msa0188630:CDS
GCTCTACGTGAACACCATAC+CGG 0.625303 2_1:-3831526 Msa0188630:CDS
AAAAGGTTTCTGGATGCCAA+TGG 0.632135 2_1:-3834189 Msa0188630:CDS
ATAAAAGTCTACATTAATAG+CGG 0.634495 2_1:+3830157 None:intergenic
CTTCATACCAACAATAACAT+GGG 0.635911 2_1:+3834305 None:intergenic
TGCTTCCATTGAGGACCAAG+AGG 0.639157 2_1:+3831591 None:intergenic
CTCACCTTGCTAATGCAGGT+GGG 0.643574 2_1:+3835320 None:intergenic
TAACACCCCATCAAAAGCAA+GGG 0.645381 2_1:+3835426 None:intergenic
TTAACATCTGCTGGACGAGG+AGG 0.648626 2_1:+3830702 None:intergenic
GGAGGTAAAACATCCCGAGT+GGG 0.648984 2_1:-3830808 Msa0188630:CDS
TTTGGTAATGAAACTCCACC+AGG 0.650986 2_1:+3835746 None:intergenic
GAGCTTGTACGGGAACAGGA+GGG 0.653809 2_1:+3830652 None:intergenic
AGATAATGATGTAAGAGAGG+TGG 0.657371 2_1:-3835774 Msa0188630:CDS
TGATTTATTATGATTAGACG+AGG 0.659442 2_1:+3831452 None:intergenic
TCATGAAGAGATACATACAA+TGG 0.662017 2_1:-3830263 Msa0188630:three_prime_UTR
GACACAACTGAGATGACTAG+AGG 0.662771 2_1:-3830609 Msa0188630:CDS
GAAGTGTTGGCTAATAAGAG+TGG 0.672984 2_1:+3830746 None:intergenic
CTGGACGTCTAGGTATTCAG+TGG 0.675217 2_1:-3831488 Msa0188630:CDS
AGATGTTAATATAAATTCAG+CGG 0.677176 2_1:-3830688 Msa0188630:CDS
ATTGTTGGTATGAAGATGGG+AGG 0.685663 2_1:-3834297 Msa0188630:CDS
AGGAGGTAAAACATCCCGAG+TGG 0.699249 2_1:-3830809 Msa0188630:CDS
CAATAGCCAGGAGTCTCCTG+CGG 0.701835 2_1:+3830585 None:intergenic
TAATAGCGGAATTACAACAG+TGG 0.707534 2_1:+3830171 None:intergenic
CATTGAATTGAAAAGCCCTG+AGG 0.721249 2_1:+3835495 None:intergenic
TGATGATTATGATGACACGT+TGG 0.726229 2_1:-3830469 Msa0188630:CDS
TATTAGCCAACACTTCACAG+GGG 0.757600 2_1:-3830739 Msa0188630:CDS
AATTCAGCGGTCTATCCGGG+CGG 0.783551 2_1:-3830675 Msa0188630:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTATTTATAAATTAA+TGG - chr2_1:3831179-3831198 Msa0188630:intron 0.0%
!!! TTACTTAAAAATCTAATTTT+TGG - chr2_1:3829901-3829920 Msa0188630:three_prime_UTR 10.0%
!! ATGTAATCTTTATAAATAAA+TGG - chr2_1:3830895-3830914 Msa0188630:CDS 10.0%
!!! TTTTATTTATAAATTAATGG+TGG - chr2_1:3831182-3831201 Msa0188630:intron 10.0%
!! AAATAGGATTAAAAATAAAT+GGG + chr2_1:3831758-3831777 None:intergenic 10.0%
!! TAAAATAGTTTACATTAATA+TGG + chr2_1:3833016-3833035 None:intergenic 10.0%
!! TATAAATATATAAATATTCC+GGG + chr2_1:3833402-3833421 None:intergenic 10.0%
!! GCAAAAATAAAAATAATATA+AGG + chr2_1:3833464-3833483 None:intergenic 10.0%
!!! TATATTATTTTTATTTTTGC+AGG - chr2_1:3833464-3833483 Msa0188630:intron 10.0%
!!! TTATTAATAATTTTTATTCC+CGG + chr2_1:3833795-3833814 None:intergenic 10.0%
!!! AAAAATCTAATTTTTGGTTT+AGG - chr2_1:3829907-3829926 Msa0188630:three_prime_UTR 15.0%
!!! AAAATCTAATTTTTGGTTTA+GGG - chr2_1:3829908-3829927 Msa0188630:three_prime_UTR 15.0%
!! TTTATCACATTTGATTAATT+TGG + chr2_1:3830464-3830483 None:intergenic 15.0%
!! AAATTAATCAAATGTGATAA+AGG - chr2_1:3830463-3830482 Msa0188630:CDS 15.0%
!! AATATGATAAAGCAATAATA+AGG + chr2_1:3831461-3831480 None:intergenic 15.0%
!!! TAATTTAGTTTATACTTTAC+AGG - chr2_1:3831615-3831634 Msa0188630:CDS 15.0%
!! CAAATAGGATTAAAAATAAA+TGG + chr2_1:3831759-3831778 None:intergenic 15.0%
!!! CATTTATTTTTAATCCTATT+TGG - chr2_1:3831757-3831776 Msa0188630:intron 15.0%
!! TAATAATGATTCTCAATATT+GGG + chr2_1:3832102-3832121 None:intergenic 15.0%
!! ATAATAATGATTCTCAATAT+TGG + chr2_1:3832103-3832122 None:intergenic 15.0%
!!! TTTTCTTACAAAGTTTTTTT+TGG - chr2_1:3832605-3832624 Msa0188630:CDS 15.0%
!! GTTAAACAATAGAAAAATAA+AGG - chr2_1:3832644-3832663 Msa0188630:CDS 15.0%
!! TTTAGAAAATCTTAAACTAA+CGG + chr2_1:3832804-3832823 None:intergenic 15.0%
!!! TTGAAATAATCTAAAACAAA+CGG - chr2_1:3833138-3833157 Msa0188630:intron 15.0%
!!! TCATTTGAAATCAATTAATT+TGG + chr2_1:3833213-3833232 None:intergenic 15.0%
!! ATTATATAATATAACAGCTT+GGG + chr2_1:3833769-3833788 None:intergenic 15.0%
!! AATTATATAATATAACAGCT+TGG + chr2_1:3833770-3833789 None:intergenic 15.0%
!!! TATTAATAATTTTTATTCCC+GGG + chr2_1:3833794-3833813 None:intergenic 15.0%
!!! TATTATTCTCATTATTGATT+TGG - chr2_1:3836188-3836207 Msa0188630:intron 15.0%
!!! TTGATTAATTTGGAAACATT+TGG + chr2_1:3830454-3830473 None:intergenic 20.0%
!!! AATTCAATGTTTGAATTTTC+TGG - chr2_1:3830698-3830717 Msa0188630:CDS 20.0%
!!! ATTCAATGTTTGAATTTTCT+GGG - chr2_1:3830699-3830718 Msa0188630:CDS 20.0%
!!! GAACCTGTTTTTATTTATAA+CGG - chr2_1:3831100-3831119 Msa0188630:CDS 20.0%
!! AGAATATGATACTTGATAAA+TGG - chr2_1:3831543-3831562 Msa0188630:CDS 20.0%
!!! TAAATGGTTCTAGTTAAATT+AGG - chr2_1:3831559-3831578 Msa0188630:CDS 20.0%
!! TAATTATGAAAAGCAATAGT+TGG + chr2_1:3831797-3831816 None:intergenic 20.0%
!!! AGATGTAATATATTTAAAGC+AGG - chr2_1:3831908-3831927 Msa0188630:intron 20.0%
!!! TTTCAATTTTTTCTGAACAT+CGG + chr2_1:3831958-3831977 None:intergenic 20.0%
!! TCAGAAAAAATTGAAAGAAA+TGG - chr2_1:3831962-3831981 Msa0188630:intron 20.0%
!!! ATTTTTAACATATCCTGAAA+AGG + chr2_1:3832079-3832098 None:intergenic 20.0%
!! TAGAATATCTCTTCATTTAT+TGG - chr2_1:3832193-3832212 Msa0188630:intron 20.0%
!! TTTGTATTTCATTCTTATTG+TGG + chr2_1:3832249-3832268 None:intergenic 20.0%
!! GGTTATTAGTTATATATTAG+AGG - chr2_1:3832384-3832403 Msa0188630:intron 20.0%
!!! TAAGAAAAGTATATAAACCA+TGG + chr2_1:3833073-3833092 None:intergenic 20.0%
!!! CATTTTTGCTGTAAATAATT+TGG + chr2_1:3833115-3833134 None:intergenic 20.0%
!!! CAAAAATAGCACAAATTTTA+GGG + chr2_1:3833164-3833183 None:intergenic 20.0%
!!! TCAAAAATAGCACAAATTTT+AGG + chr2_1:3833165-3833184 None:intergenic 20.0%
!! TGAGGAAAATAAAATTGTTA+GGG + chr2_1:3833289-3833308 None:intergenic 20.0%
!! TGTTATATTATATAATTGCC+CGG - chr2_1:3833773-3833792 Msa0188630:intron 20.0%
!! GAATATAGATATGCTATATA+GGG + chr2_1:3833953-3833972 None:intergenic 20.0%
!! AGAATATAGATATGCTATAT+AGG + chr2_1:3833954-3833973 None:intergenic 20.0%
!!! GTTGATGTTTTATTTCATTT+TGG - chr2_1:3834122-3834141 Msa0188630:intron 20.0%
!!! AACAAAATTTCATTTGGTTT+TGG + chr2_1:3834192-3834211 None:intergenic 20.0%
!!! AAAACCAAATGAAATTTTGT+TGG - chr2_1:3834191-3834210 Msa0188630:CDS 20.0%
!! AAATTACCATTCTGTAATAA+GGG + chr2_1:3834331-3834350 None:intergenic 20.0%
!! TAAATTACCATTCTGTAATA+AGG + chr2_1:3834332-3834351 None:intergenic 20.0%
!! ATTTCATGAAATCAAAATTC+AGG + chr2_1:3834374-3834393 None:intergenic 20.0%
!! AAGGAAACAAATTTAAAAGA+GGG + chr2_1:3834414-3834433 None:intergenic 20.0%
!!! TTTGTTGTCATTTATTGATT+TGG - chr2_1:3834960-3834979 Msa0188630:intron 20.0%
!! AGATGTTAATATAAATTCAG+CGG - chr2_1:3835491-3835510 Msa0188630:CDS 20.0%
!! GATAAGTTGTAAGTTATTTA+AGG - chr2_1:3835971-3835990 Msa0188630:intron 20.0%
!! ATAAAAGTCTACATTAATAG+CGG + chr2_1:3836025-3836044 None:intergenic 20.0%
! TGAGAGTTATTTACTTAGTA+TGG - chr2_1:3830228-3830247 Msa0188630:three_prime_UTR 25.0%
! ACGATATATCTTCTGATATA+AGG - chr2_1:3830317-3830336 Msa0188630:three_prime_UTR 25.0%
! AAATTGTGTTTGATATCTGT+TGG - chr2_1:3831016-3831035 Msa0188630:CDS 25.0%
!!! ATAGTTTTGAAGAATCAGAA+TGG - chr2_1:3831143-3831162 Msa0188630:CDS 25.0%
!! TTTGAAATTCTATGTGCATT+TGG - chr2_1:3831246-3831265 Msa0188630:intron 25.0%
! CATAACAACAGTAGATATAA+TGG + chr2_1:3831314-3831333 None:intergenic 25.0%
! TTATCATATTCTGATTAAGC+TGG - chr2_1:3831471-3831490 Msa0188630:CDS 25.0%
! TATCATATTCTGATTAAGCT+GGG - chr2_1:3831472-3831491 Msa0188630:CDS 25.0%
!!! AGTTAAATTAGGATTGGTTT+TGG - chr2_1:3831570-3831589 Msa0188630:CDS 25.0%
! AACTTTAATTGATTGTCCTA+GGG - chr2_1:3831694-3831713 Msa0188630:intron 25.0%
! ATTAAAAATAAATGGGAGCT+GGG + chr2_1:3831751-3831770 None:intergenic 25.0%
!! TTTCACAAACCTTTTCATTT+GGG + chr2_1:3832046-3832065 None:intergenic 25.0%
!! ATTTCACAAACCTTTTCATT+TGG + chr2_1:3832047-3832066 None:intergenic 25.0%
!! AAATTATGCTTTTCCTTTTC+AGG - chr2_1:3832063-3832082 Msa0188630:intron 25.0%
! TATAACTAATAACCTACATG+TGG + chr2_1:3832378-3832397 None:intergenic 25.0%
! TTAAAAAAATTGTTACCGTG+AGG - chr2_1:3832721-3832740 Msa0188630:intron 25.0%
!!! TGTGCTATTTTTGATTTGTA+AGG - chr2_1:3833171-3833190 Msa0188630:intron 25.0%
! GTGAGGAAAATAAAATTGTT+AGG + chr2_1:3833290-3833309 None:intergenic 25.0%
!!! ATTTTATTTTCCTCACAGTT+TGG - chr2_1:3833294-3833313 Msa0188630:intron 25.0%
! TTATGTGAATAAGAACTTGA+TGG + chr2_1:3833357-3833376 None:intergenic 25.0%
! ATCAAGTTCTTATTCACATA+AGG - chr2_1:3833356-3833375 Msa0188630:intron 25.0%
! AAAATTTATCGCATAATCAG+TGG - chr2_1:3833529-3833548 Msa0188630:intron 25.0%
! GTAAATAAAGGTTTATAGCA+TGG + chr2_1:3833650-3833669 None:intergenic 25.0%
! GTTATATTATATAATTGCCC+GGG - chr2_1:3833774-3833793 Msa0188630:intron 25.0%
! TGTATTCCTTATATGTAAGT+AGG - chr2_1:3833819-3833838 Msa0188630:intron 25.0%
! GTATTCCTTATATGTAAGTA+GGG - chr2_1:3833820-3833839 Msa0188630:intron 25.0%
! TATTCCTTATATGTAAGTAG+GGG - chr2_1:3833821-3833840 Msa0188630:intron 25.0%
! AAAACATCAACAAGCATTAT+GGG + chr2_1:3834113-3834132 None:intergenic 25.0%
! TAAAACATCAACAAGCATTA+TGG + chr2_1:3834114-3834133 None:intergenic 25.0%
!!! AAAATTTCATTTGGTTTTGG+AGG + chr2_1:3834189-3834208 None:intergenic 25.0%
! TTCTCCAACAAAATTTCATT+TGG + chr2_1:3834198-3834217 None:intergenic 25.0%
! GTATGTTTCAGTACTTAATA+AGG + chr2_1:3834303-3834322 None:intergenic 25.0%
! TTCATGAAATTAAATTCCCA+TGG - chr2_1:3834384-3834403 Msa0188630:intron 25.0%
! GAAGGAAACAAATTTAAAAG+AGG + chr2_1:3834415-3834434 None:intergenic 25.0%
! AATGATGAAACATTTCAAAC+TGG + chr2_1:3834470-3834489 None:intergenic 25.0%
! TGATTTATTATGATTAGACG+AGG + chr2_1:3834730-3834749 None:intergenic 25.0%
! AGGAAAATTACTAAATCAGT+GGG - chr2_1:3834776-3834795 Msa0188630:intron 25.0%
! TTGTTTATATTCACATGTAG+TGG - chr2_1:3834815-3834834 Msa0188630:intron 25.0%
!!! AATTCACTGTATTTTAACCT+TGG - chr2_1:3834926-3834945 Msa0188630:intron 25.0%
! CAATAAATGACAACAAACTT+CGG + chr2_1:3834957-3834976 None:intergenic 25.0%
!! TGTTATAACATGAAGTATTC+CGG + chr2_1:3835018-3835037 None:intergenic 25.0%
! GAATTTATATTAACATCTGC+TGG + chr2_1:3835489-3835508 None:intergenic 25.0%
!!! TCAACAAATTTTAGAAGCTT+GGG + chr2_1:3835552-3835571 None:intergenic 25.0%
! AGAAGGGAAAAATTTCTTTA+CGG - chr2_1:3835646-3835665 Msa0188630:intron 25.0%
!! TTTGTTGACTATGATATTAC+CGG - chr2_1:3835680-3835699 Msa0188630:CDS 25.0%
!!! GAACTAAGTGTTCATTTTTT+AGG - chr2_1:3835786-3835805 Msa0188630:CDS 25.0%
!!! TAAGTGTTCATTTTTTAGGA+GGG - chr2_1:3835790-3835809 Msa0188630:CDS 25.0%
!!! GTGTTTTAATCACAGTAAAA+AGG + chr2_1:3835889-3835908 None:intergenic 25.0%
!! TAAGTTATTTAAGGAGTGTA+GGG - chr2_1:3835980-3835999 Msa0188630:intron 25.0%
! AGCAACTTTCATATTTAACT+TGG - chr2_1:3836288-3836307 Msa0188630:five_prime_UTR 25.0%
TTGTACACTATGCACAATTT+GGG - chr2_1:3830091-3830110 Msa0188630:three_prime_UTR 30.0%
!! ATAAGGCTCAAGTTTTGTAA+AGG - chr2_1:3830334-3830353 Msa0188630:three_prime_UTR 30.0%
TGAAGATAATGATGTAAGAG+AGG - chr2_1:3830402-3830421 Msa0188630:three_prime_UTR 30.0%
! TGATGTTTTGTCTTTTCAAC+AGG - chr2_1:3830507-3830526 Msa0188630:CDS 30.0%
TAAAGCAAAGCAAAGCAATT+AGG + chr2_1:3830572-3830591 None:intergenic 30.0%
! TAATAATACTTGGCTTGACA+TGG + chr2_1:3830939-3830958 None:intergenic 30.0%
CATCAGAGTGTAATAATACT+TGG + chr2_1:3830949-3830968 None:intergenic 30.0%
TAAATATGACCTATCAAGGA+AGG + chr2_1:3831046-3831065 None:intergenic 30.0%
TTCCTTGATAGGTCATATTT+AGG - chr2_1:3831045-3831064 Msa0188630:CDS 30.0%
CAGCCGTTATAAATAAAAAC+AGG + chr2_1:3831106-3831125 None:intergenic 30.0%
ACAGATAGATGCAAAAATAC+TGG + chr2_1:3831382-3831401 None:intergenic 30.0%
! GGTTCTAGTTAAATTAGGAT+TGG - chr2_1:3831564-3831583 Msa0188630:CDS 30.0%
TTAATGCAACAATTCTCTTG+AGG - chr2_1:3831656-3831675 Msa0188630:CDS 30.0%
CAACTTTAATTGATTGTCCT+AGG - chr2_1:3831693-3831712 Msa0188630:intron 30.0%
ACTTTAATTGATTGTCCTAG+GGG - chr2_1:3831695-3831714 Msa0188630:intron 30.0%
AATTGAATTAGATAACCCCT+AGG + chr2_1:3831713-3831732 None:intergenic 30.0%
AGGGGTTATCTAATTCAATT+AGG - chr2_1:3831713-3831732 Msa0188630:intron 30.0%
GATTAAAAATAAATGGGAGC+TGG + chr2_1:3831752-3831771 None:intergenic 30.0%
GAAAAGCAATCGATAAATCT+GGG + chr2_1:3831821-3831840 None:intergenic 30.0%
TGAAAAGCAATCGATAAATC+TGG + chr2_1:3831822-3831841 None:intergenic 30.0%
!! TTGCTTTTCATAATTAACCC+AGG - chr2_1:3831801-3831820 Msa0188630:intron 30.0%
CTTCATACCAACAATAACAT+GGG + chr2_1:3831877-3831896 None:intergenic 30.0%
TCTTCATACCAACAATAACA+TGG + chr2_1:3831878-3831897 None:intergenic 30.0%
TGTTATTGTTGGTATGAAGA+TGG - chr2_1:3831878-3831897 Msa0188630:intron 30.0%
GTTATTGTTGGTATGAAGAT+GGG - chr2_1:3831879-3831898 Msa0188630:intron 30.0%
TGAAAGAAATGGCAGATAAA+AGG - chr2_1:3831973-3831992 Msa0188630:intron 30.0%
! TCAAGTTTTCCCAAATGAAA+AGG - chr2_1:3832034-3832053 Msa0188630:intron 30.0%
! GAAGTACTTTGTGATAAAGA+GGG + chr2_1:3832227-3832246 None:intergenic 30.0%
GCTTAATTCCAGAAAATTCA+GGG + chr2_1:3832410-3832429 None:intergenic 30.0%
TGCTTAATTCCAGAAAATTC+AGG + chr2_1:3832411-3832430 None:intergenic 30.0%
!!! GAATTTTCTGGAATTAAGCA+AGG - chr2_1:3832411-3832430 Msa0188630:intron 30.0%
! TTACATGTTTTCTTGGATCT+AGG + chr2_1:3832446-3832465 None:intergenic 30.0%
AAGTTCTTATTCACATAAGG+AGG - chr2_1:3833359-3833378 Msa0188630:intron 30.0%
! ATATAGTAAGCTTTTGCAAG+AGG - chr2_1:3833487-3833506 Msa0188630:intron 30.0%
CCATTTAATAGAGAGGTAAT+TGG + chr2_1:3833603-3833622 None:intergenic 30.0%
CCAATTACCTCTCTATTAAA+TGG - chr2_1:3833600-3833619 Msa0188630:intron 30.0%
TTTGCTCACATCGTAAATAA+AGG + chr2_1:3833662-3833681 None:intergenic 30.0%
ATTCCTTATATGTAAGTAGG+GGG - chr2_1:3833822-3833841 Msa0188630:intron 30.0%
!! TGGTTTGTATTTGGTAGTTT+TGG - chr2_1:3833859-3833878 Msa0188630:intron 30.0%
! GGAAAAAGTTCATTCTCTTT+TGG - chr2_1:3833880-3833899 Msa0188630:intron 30.0%
TAGATCATTAGGAACTTATC+AGG - chr2_1:3834054-3834073 Msa0188630:intron 30.0%
TCTGGTTGTAAAAACTATAG+TGG + chr2_1:3834082-3834101 None:intergenic 30.0%
ATATGATCAGTCAACAATGA+AGG + chr2_1:3834433-3834452 None:intergenic 30.0%
! ATCTTTACAGTTTAGCTTCA+TGG - chr2_1:3834623-3834642 Msa0188630:intron 30.0%
! TCTTTACAGTTTAGCTTCAT+GGG - chr2_1:3834624-3834643 Msa0188630:intron 30.0%
TGAATAAAGATTTACCGGTA+TGG + chr2_1:3834670-3834689 None:intergenic 30.0%
CCAGATGAATAAAGATTTAC+CGG + chr2_1:3834675-3834694 None:intergenic 30.0%
GAGGAAAATTACTAAATCAG+TGG - chr2_1:3834775-3834794 Msa0188630:intron 30.0%
! GTTATAACATGAAGTATTCC+GGG + chr2_1:3835017-3835036 None:intergenic 30.0%
GGAATACTTCATGTTATAAC+AGG - chr2_1:3835017-3835036 Msa0188630:intron 30.0%
!! ATGTTATAACAGGTTGATGT+AGG - chr2_1:3835027-3835046 Msa0188630:intron 30.0%
TAGAAGGTAAGAAAAGCAAT+CGG - chr2_1:3835082-3835101 Msa0188630:intron 30.0%
!! TTTCGTCTGAAGTTTTCATT+TGG + chr2_1:3835168-3835187 None:intergenic 30.0%
CTCATAGAATCTCTTATCAT+AGG + chr2_1:3835193-3835212 None:intergenic 30.0%
TGATAAGAGATTCTATGAGA+AGG - chr2_1:3835194-3835213 Msa0188630:intron 30.0%
! CAATTGCAAGTTGAGAATTA+TGG - chr2_1:3835294-3835313 Msa0188630:intron 30.0%
ACTTAAATTCTCAACTGTGT+TGG - chr2_1:3835341-3835360 Msa0188630:CDS 30.0%
CTTAAATTCTCAACTGTGTT+GGG - chr2_1:3835342-3835361 Msa0188630:CDS 30.0%
!! GTCAACAAATTTTAGAAGCT+TGG + chr2_1:3835553-3835572 None:intergenic 30.0%
GAAGGGAAAAATTTCTTTAC+GGG - chr2_1:3835647-3835666 Msa0188630:intron 30.0%
TCATAATCATCATCATCATC+CGG + chr2_1:3835702-3835721 None:intergenic 30.0%
!!! CTAAGTGTTCATTTTTTAGG+AGG - chr2_1:3835789-3835808 Msa0188630:CDS 30.0%
GTATTCGTCATCAAGATAAT+TGG - chr2_1:3835835-3835854 Msa0188630:CDS 30.0%
!!! TGGTTTTAGTTTTCCTAATC+AGG - chr2_1:3835855-3835874 Msa0188630:CDS 30.0%
!!! TTTAGTTTTCCTAATCAGGT+AGG - chr2_1:3835859-3835878 Msa0188630:CDS 30.0%
!! TTAGTTTTCCTAATCAGGTA+GGG - chr2_1:3835860-3835879 Msa0188630:CDS 30.0%
TCATGAAGAGATACATACAA+TGG - chr2_1:3835916-3835935 Msa0188630:CDS 30.0%
!! TTTTGAAGAGATTGATGTGA+AGG - chr2_1:3835946-3835965 Msa0188630:exon 30.0%
TTTGAAGAGATTGATGTGAA+GGG - chr2_1:3835947-3835966 Msa0188630:exon 30.0%
! GTAAGTTATTTAAGGAGTGT+AGG - chr2_1:3835979-3835998 Msa0188630:intron 30.0%
! AAGTTATTTAAGGAGTGTAG+GGG - chr2_1:3835981-3836000 Msa0188630:intron 30.0%
!!! AAATCAGCTAGTCATTTTTC+TGG + chr2_1:3836051-3836070 None:intergenic 30.0%
ACTGATCTAATCAAAACAAG+AGG + chr2_1:3836103-3836122 None:intergenic 30.0%
!!! CTTGTTTTGATTAGATCAGT+TGG - chr2_1:3836103-3836122 Msa0188630:intron 30.0%
ACTACATTAGAGATCTATGT+TGG - chr2_1:3836248-3836267 Msa0188630:five_prime_UTR 30.0%
TTTGTCTTTGCATGTCTTGT+TGG - chr2_1:3830046-3830065 Msa0188630:three_prime_UTR 35.0%
GTTGTACACTATGCACAATT+TGG - chr2_1:3830090-3830109 Msa0188630:three_prime_UTR 35.0%
ATGGCACCTAAAAATGAAGA+TGG - chr2_1:3830247-3830266 Msa0188630:three_prime_UTR 35.0%
!! TGAGCTCCATCTTCATTTTT+AGG + chr2_1:3830256-3830275 None:intergenic 35.0%
AGATAATGATGTAAGAGAGG+TGG - chr2_1:3830405-3830424 Msa0188630:three_prime_UTR 35.0%
! TAGGAGATTCTGAAAACAGA+AGG + chr2_1:3830553-3830572 None:intergenic 35.0%
ATTGAATTGAAAAGCCCTGA+GGG + chr2_1:3830686-3830705 None:intergenic 35.0%
!! TGTTTGAATTTTCTGGGAGT+TGG - chr2_1:3830705-3830724 Msa0188630:CDS 35.0%
TGCCTAAATATGACCTATCA+AGG + chr2_1:3831050-3831069 None:intergenic 35.0%
! TACACACACACAGTTCATTT+TGG - chr2_1:3831071-3831090 Msa0188630:CDS 35.0%
CACTGCAGTTATATAAATCC+TGG + chr2_1:3831339-3831358 None:intergenic 35.0%
!!! AATTTTTTCTGAACATCGGC+AGG + chr2_1:3831954-3831973 None:intergenic 35.0%
AATGGCAGATAAAAGGTTTC+TGG - chr2_1:3831980-3831999 Msa0188630:intron 35.0%
!! GGAAGTACTTTGTGATAAAG+AGG + chr2_1:3832228-3832247 None:intergenic 35.0%
! CACTCAGTTACATGTTTTCT+TGG + chr2_1:3832453-3832472 None:intergenic 35.0%
CAAGAAAACATGTAACTGAG+TGG - chr2_1:3832451-3832470 Msa0188630:intron 35.0%
TAACTGAGTGGAAGTTTAAG+AGG - chr2_1:3832463-3832482 Msa0188630:intron 35.0%
!!! AAAGCTTTTAGTTTTGAGCC+AGG - chr2_1:3832487-3832506 Msa0188630:intron 35.0%
GCTGAATAACAAATTGTTCC+TGG + chr2_1:3832508-3832527 None:intergenic 35.0%
!! GTAGATGTGTTGCTATTTCA+TGG - chr2_1:3832535-3832554 Msa0188630:CDS 35.0%
!! TTGCTATTTCATGGAAGCAT+CGG - chr2_1:3832544-3832563 Msa0188630:CDS 35.0%
!!! GGAATATAGTTTTTTCCGAG+TGG - chr2_1:3832565-3832584 Msa0188630:CDS 35.0%
!!! TATAGTTTTTTCCGAGTGGA+TGG - chr2_1:3832569-3832588 Msa0188630:CDS 35.0%
!! TGGATAACATTTTGACCTCA+CGG + chr2_1:3832739-3832758 None:intergenic 35.0%
! ATGTTATCCAATGACTTGCA+TGG - chr2_1:3832749-3832768 Msa0188630:intron 35.0%
! TGTTATCCAATGACTTGCAT+GGG - chr2_1:3832750-3832769 Msa0188630:intron 35.0%
!!! CTTGAATGCTTTTTCAACCA+TGG - chr2_1:3833053-3833072 Msa0188630:intron 35.0%
GTATGCTTAGAACATTTACC+CGG - chr2_1:3833381-3833400 Msa0188630:intron 35.0%
TAGAGAGGTAATTGGAATGA+AGG + chr2_1:3833595-3833614 None:intergenic 35.0%
TGGAACTCCATTTAATAGAG+AGG + chr2_1:3833610-3833629 None:intergenic 35.0%
TCTCTATTAAATGGAGTTCC+AGG - chr2_1:3833609-3833628 Msa0188630:intron 35.0%
CTCTATTAAATGGAGTTCCA+GGG - chr2_1:3833610-3833629 Msa0188630:intron 35.0%
TAACCCCCTACTTACATATA+AGG + chr2_1:3833828-3833847 None:intergenic 35.0%
TTATATGTAAGTAGGGGGTT+AGG - chr2_1:3833827-3833846 Msa0188630:intron 35.0%
AAGTTAATATCTCGCCCAAA+GGG - chr2_1:3834013-3834032 Msa0188630:intron 35.0%
TTCCTAATGATCTACTTACG+CGG + chr2_1:3834048-3834067 None:intergenic 35.0%
!!! AGCATTTTTCAAGTCCTTGT+GGG + chr2_1:3834258-3834277 None:intergenic 35.0%
TTTAAAAGAGGGTGATCCAT+GGG + chr2_1:3834403-3834422 None:intergenic 35.0%
ATTTAAAAGAGGGTGATCCA+TGG + chr2_1:3834404-3834423 None:intergenic 35.0%
! CTTTACAGTTTAGCTTCATG+GGG - chr2_1:3834625-3834644 Msa0188630:intron 35.0%
CCGGTAAATCTTTATTCATC+TGG - chr2_1:3834672-3834691 Msa0188630:intron 35.0%
! GCATCTTTATTTGCAAGTCT+AGG + chr2_1:3834843-3834862 None:intergenic 35.0%
GCAACATTTATTCTAATGCC+CGG - chr2_1:3834996-3835015 Msa0188630:intron 35.0%
TCTTACCTTCTAGATAGAGA+CGG + chr2_1:3835074-3835093 None:intergenic 35.0%
!! AGATTTTTGGAAGGGATGAA+AGG + chr2_1:3835128-3835147 None:intergenic 35.0%
!! AAGCTGGAAGATTTTTGGAA+GGG + chr2_1:3835136-3835155 None:intergenic 35.0%
! TCTTCAAGCTGGAAGATTTT+TGG + chr2_1:3835141-3835160 None:intergenic 35.0%
GATTCTATGAGAAGGTTCAA+TGG - chr2_1:3835202-3835221 Msa0188630:intron 35.0%
TTATTAGCCAACACTTCACA+GGG - chr2_1:3835439-3835458 Msa0188630:CDS 35.0%
TATAAATTCAGCGGTCTATC+CGG - chr2_1:3835500-3835519 Msa0188630:CDS 35.0%
TGATGATTATGATGACACGT+TGG - chr2_1:3835710-3835729 Msa0188630:CDS 35.0%
TTGAAGAGATTGATGTGAAG+GGG - chr2_1:3835948-3835967 Msa0188630:exon 35.0%
! TAATAGCGGAATTACAACAG+TGG + chr2_1:3836011-3836030 None:intergenic 35.0%
! ACTAGCTGATTTAAGTCCAT+GGG - chr2_1:3836059-3836078 Msa0188630:intron 35.0%
TGGAAATTGTAGACGAACTT+TGG - chr2_1:3836208-3836227 Msa0188630:intron 35.0%
! GAACTTTGGTGATCAAGAAA+TGG - chr2_1:3836222-3836241 Msa0188630:five_prime_UTR 35.0%
! TTTGCATGTCTTGTTGGTGT+GGG - chr2_1:3830052-3830071 Msa0188630:three_prime_UTR 40.0%
AAAGCTGCTGAGATTGCAAT+TGG - chr2_1:3830277-3830296 Msa0188630:three_prime_UTR 40.0%
GAGATTGCAATTGGATCCAT+TGG - chr2_1:3830286-3830305 Msa0188630:three_prime_UTR 40.0%
TATATCGTATCCACGACCAA+TGG + chr2_1:3830305-3830324 None:intergenic 40.0%
TCATTCTCGCTTGATTGAGA+TGG - chr2_1:3830378-3830397 Msa0188630:three_prime_UTR 40.0%
!! TTTGGTAATGAAACTCCACC+AGG + chr2_1:3830436-3830455 None:intergenic 40.0%
GAAAAGAAGCAAACCCTTGT+TGG + chr2_1:3830616-3830635 None:intergenic 40.0%
AATCAGGAGTTGTCTTTGAC+TGG - chr2_1:3830653-3830672 Msa0188630:CDS 40.0%
CATTGAATTGAAAAGCCCTG+AGG + chr2_1:3830687-3830706 None:intergenic 40.0%
TAACACCCCATCAAAAGCAA+GGG + chr2_1:3830756-3830775 None:intergenic 40.0%
TTAACACCCCATCAAAAGCA+AGG + chr2_1:3830757-3830776 None:intergenic 40.0%
AGAAAGCTGTTCCATCATCA+TGG - chr2_1:3830834-3830853 Msa0188630:CDS 40.0%
GAAAGCTGTTCCATCATCAT+GGG - chr2_1:3830835-3830854 Msa0188630:CDS 40.0%
TCTGATGTATGTAGCCAACA+AGG - chr2_1:3830962-3830981 Msa0188630:CDS 40.0%
CTGATGTATGTAGCCAACAA+GGG - chr2_1:3830963-3830982 Msa0188630:CDS 40.0%
!! GTTGGTAATCCTTCCTTGAT+AGG - chr2_1:3831034-3831053 Msa0188630:CDS 40.0%
ATCTACTGTTGTTATGCTCC+AGG - chr2_1:3831318-3831337 Msa0188630:intron 40.0%
CAAAAAACAACTGAAACCCG+AGG + chr2_1:3831512-3831531 None:intergenic 40.0%
!! CCAAAGGTATCGATAAACCT+GGG + chr2_1:3831852-3831871 None:intergenic 40.0%
AACAATAACATGGGTGCCAA+AGG + chr2_1:3831868-3831887 None:intergenic 40.0%
TTTGGCACCCATGTTATTGT+TGG - chr2_1:3831867-3831886 Msa0188630:intron 40.0%
ATTGTTGGTATGAAGATGGG+AGG - chr2_1:3831882-3831901 Msa0188630:intron 40.0%
! AAAAGGTTTCTGGATGCCAA+TGG - chr2_1:3831990-3832009 Msa0188630:intron 40.0%
GATCAGAAGCTGAGCTATAT+TGG + chr2_1:3832016-3832035 None:intergenic 40.0%
TTGTGATAAAGAGGGTCTAG+TGG + chr2_1:3832219-3832238 None:intergenic 40.0%
! ATTAGAGGCCCTGAATTTTC+TGG - chr2_1:3832399-3832418 Msa0188630:intron 40.0%
TAGCAACACATCTACATTGC+AGG + chr2_1:3832530-3832549 None:intergenic 40.0%
AAATCTCAGAACCATCCACT+CGG + chr2_1:3832583-3832602 None:intergenic 40.0%
ACAACTGCACAAACTATGTG+AGG - chr2_1:3832672-3832691 Msa0188630:CDS 40.0%
TGCACAAACTATGTGAGGTA+TGG - chr2_1:3832677-3832696 Msa0188630:CDS 40.0%
GCACAAACTATGTGAGGTAT+GGG - chr2_1:3832678-3832697 Msa0188630:CDS 40.0%
AGTTCACGTCAACTCTTGTT+AGG - chr2_1:3833254-3833273 Msa0188630:intron 40.0%
! TTTCCTCACAGTTTGGAATC+AGG - chr2_1:3833301-3833320 Msa0188630:intron 40.0%
AAGGACATTGAGATCACATC+AGG + chr2_1:3833576-3833595 None:intergenic 40.0%
!!! AACTGTTGCCTGTGTTGTTT+TGG - chr2_1:3833743-3833762 Msa0188630:intron 40.0%
TGAGAGTCATAGTTAGCTAG+AGG + chr2_1:3833981-3834000 None:intergenic 40.0%
CAAGTTAATATCTCGCCCAA+AGG - chr2_1:3834012-3834031 Msa0188630:intron 40.0%
ATCCGCGTAAGTAGATCATT+AGG - chr2_1:3834043-3834062 Msa0188630:intron 40.0%
! TAGTTTTTACAACCAGACCC+AGG - chr2_1:3834085-3834104 Msa0188630:intron 40.0%
AACAAGCATTATGGGTTCCT+GGG + chr2_1:3834105-3834124 None:intergenic 40.0%
!! GAAATGTGTGTGCTAGCTTT+AGG - chr2_1:3834215-3834234 Msa0188630:CDS 40.0%
!! CTAGCTTTAGGAGTGTGTAT+AGG - chr2_1:3834227-3834246 Msa0188630:CDS 40.0%
!!! CAGCATTTTTCAAGTCCTTG+TGG + chr2_1:3834259-3834278 None:intergenic 40.0%
CAGACACCCTTATTACAGAA+TGG - chr2_1:3834322-3834341 Msa0188630:CDS 40.0%
AATTGGTGGAGCTCTTCAAT+TGG + chr2_1:3834519-3834538 None:intergenic 40.0%
GAAGCTGGAATTCCAAGAAT+TGG + chr2_1:3834536-3834555 None:intergenic 40.0%
AGAGGAAGATCACTGAATAC+AGG + chr2_1:3834573-3834592 None:intergenic 40.0%
GTATTCAGTGATCTTCCTCT+TGG - chr2_1:3834573-3834592 Msa0188630:intron 40.0%
CTTTATTCATCTGGACGTCT+AGG - chr2_1:3834681-3834700 Msa0188630:intron 40.0%
TAAATCATGCTCGTGTCCTT+TGG - chr2_1:3834743-3834762 Msa0188630:intron 40.0%
TTTCCTCCAACACAAACCAA+AGG + chr2_1:3834762-3834781 None:intergenic 40.0%
! ATCAGTGGGAAGAAGCTTTT+AGG - chr2_1:3834790-3834809 Msa0188630:intron 40.0%
AACAAACTTCGGAATGTCCA+AGG + chr2_1:3834946-3834965 None:intergenic 40.0%
!! AACAGGTTGATGTAGGTAAG+AGG - chr2_1:3835034-3835053 Msa0188630:intron 40.0%
AGGTAAGAAAAGCAATCGGT+TGG - chr2_1:3835086-3835105 Msa0188630:intron 40.0%
!! TGAAAGGTGTTGCATATGGA+TGG + chr2_1:3835112-3835131 None:intergenic 40.0%
!! CAAGCTGGAAGATTTTTGGA+AGG + chr2_1:3835137-3835156 None:intergenic 40.0%
CATTTGGATCATCTTCAAGC+TGG + chr2_1:3835152-3835171 None:intergenic 40.0%
GAGGAGCTTTCAATAGTAAC+CGG - chr2_1:3835267-3835286 Msa0188630:intron 40.0%
AGTGGATATAAGTCCAGACT+TGG + chr2_1:3835418-3835437 None:intergenic 40.0%
!! GAAGTGTTGGCTAATAAGAG+TGG + chr2_1:3835436-3835455 None:intergenic 40.0%
CTTATTAGCCAACACTTCAC+AGG - chr2_1:3835438-3835457 Msa0188630:CDS 40.0%
TATTAGCCAACACTTCACAG+GGG - chr2_1:3835440-3835459 Msa0188630:CDS 40.0%
ATATTAACATCTGCTGGACG+AGG + chr2_1:3835483-3835502 None:intergenic 40.0%
ATAAATTCAGCGGTCTATCC+GGG - chr2_1:3835501-3835520 Msa0188630:CDS 40.0%
!! AGCAAGACTTTTGGTTGAGA+AGG - chr2_1:3835629-3835648 Msa0188630:intron 40.0%
!! GCAAGACTTTTGGTTGAGAA+GGG - chr2_1:3835630-3835649 Msa0188630:intron 40.0%
! AGCTGACTTTGTTCTTCGTT+AGG - chr2_1:3835742-3835761 Msa0188630:CDS 40.0%
!! ACACTTAGTTCTGCTGATGA+AGG + chr2_1:3835777-3835796 None:intergenic 40.0%
!!! GTTCATTTTTTAGGAGGGAG+AGG - chr2_1:3835795-3835814 Msa0188630:CDS 40.0%
!!! ATTTTTTAGGAGGGAGAGGT+TGG - chr2_1:3835799-3835818 Msa0188630:CDS 40.0%
!!! TTTTTTAGGAGGGAGAGGTT+GGG - chr2_1:3835800-3835819 Msa0188630:CDS 40.0%
TGAAGAGATTGATGTGAAGG+GGG - chr2_1:3835949-3835968 Msa0188630:exon 40.0%
! GACTAGCTGATTTAAGTCCA+TGG - chr2_1:3836058-3836077 Msa0188630:intron 40.0%
GACGATCCGCAAACAGTAAT+TGG - chr2_1:3829948-3829967 Msa0188630:three_prime_UTR 45.0%
GTGCAGCCAATTACTGTTTG+CGG + chr2_1:3829957-3829976 None:intergenic 45.0%
! CTTTGCATGTCTTGTTGGTG+TGG - chr2_1:3830051-3830070 Msa0188630:three_prime_UTR 45.0%
!! GTAAGAGAGGTGGTTTTACC+TGG - chr2_1:3830415-3830434 Msa0188630:three_prime_UTR 45.0%
CAAAACATCAGACCTGAACC+TGG + chr2_1:3830497-3830516 None:intergenic 45.0%
!! AAACCCTTGTTGGCTTTGGA+GGG + chr2_1:3830606-3830625 None:intergenic 45.0%
!! AAGCAAACCCTTGTTGGCTT+TGG + chr2_1:3830610-3830629 None:intergenic 45.0%
CAACTCCTGATTGAACTGCT+CGG + chr2_1:3830645-3830664 None:intergenic 45.0%
TTGACTGGCAAAATTCCCTC+AGG - chr2_1:3830668-3830687 Msa0188630:CDS 45.0%
TGACTGGCAAAATTCCCTCA+GGG - chr2_1:3830669-3830688 Msa0188630:CDS 45.0%
!! ACCAAGACCCTTGCTTTTGA+TGG - chr2_1:3830746-3830765 Msa0188630:CDS 45.0%
!! CCAAGACCCTTGCTTTTGAT+GGG - chr2_1:3830747-3830766 Msa0188630:CDS 45.0%
!! CAAGACCCTTGCTTTTGATG+GGG - chr2_1:3830748-3830767 Msa0188630:CDS 45.0%
TCAACTCACCTTGCTAATGC+AGG + chr2_1:3830866-3830885 None:intergenic 45.0%
TGTATGTAGCCAACAAGGGT+CGG - chr2_1:3830967-3830986 Msa0188630:CDS 45.0%
GGGCATTTGACATATCTCCT+CGG - chr2_1:3831492-3831511 Msa0188630:CDS 45.0%
GGCATTTGACATATCTCCTC+GGG - chr2_1:3831493-3831512 Msa0188630:CDS 45.0%
CAAGAGTCTCGAGTCCAAAT+AGG + chr2_1:3831774-3831793 None:intergenic 45.0%
CCCAGGTTTATCGATACCTT+TGG - chr2_1:3831849-3831868 Msa0188630:intron 45.0%
!! GCCAAAGGTATCGATAAACC+TGG + chr2_1:3831853-3831872 None:intergenic 45.0%
! TTTTCTGAACATCGGCAGGT+TGG + chr2_1:3831950-3831969 None:intergenic 45.0%
AGCTGAGCTATATTGGCCAT+TGG + chr2_1:3832009-3832028 None:intergenic 45.0%
AAACTGGCACGTACAAAGCT+AGG + chr2_1:3832286-3832305 None:intergenic 45.0%
GGAAAATCACGTGGGAAAAC+TGG + chr2_1:3832302-3832321 None:intergenic 45.0%
CCCTAGTTGAAGTCTCTTTG+GGG + chr2_1:3832327-3832346 None:intergenic 45.0%
CCCCAAAGAGACTTCAACTA+GGG - chr2_1:3832324-3832343 Msa0188630:intron 45.0%
CCCCTAGTTGAAGTCTCTTT+GGG + chr2_1:3832328-3832347 None:intergenic 45.0%
CCCAAAGAGACTTCAACTAG+GGG - chr2_1:3832325-3832344 Msa0188630:intron 45.0%
ACCCCTAGTTGAAGTCTCTT+TGG + chr2_1:3832329-3832348 None:intergenic 45.0%
TGAGACTTTCAGCCACATGT+AGG - chr2_1:3832363-3832382 Msa0188630:intron 45.0%
CATTCTCCCATGCAAGTCAT+TGG + chr2_1:3832759-3832778 None:intergenic 45.0%
! ATGACTTGCATGGGAGAATG+AGG - chr2_1:3832759-3832778 Msa0188630:intron 45.0%
! ATGAGGAGTGTGCGAGTATA+AGG - chr2_1:3832776-3832795 Msa0188630:intron 45.0%
! TGAGGAGTGTGCGAGTATAA+GGG - chr2_1:3832777-3832796 Msa0188630:intron 45.0%
CACGTCAACTCTTGTTAGGT+TGG - chr2_1:3833258-3833277 Msa0188630:intron 45.0%
! GTAAGCTTTTGCAAGAGGAG+AGG - chr2_1:3833492-3833511 Msa0188630:intron 45.0%
CACATCAGGCTCCAATTGAA+CGG + chr2_1:3833562-3833581 None:intergenic 45.0%
TTAAATGGAGTTCCAGGGAG+TGG - chr2_1:3833615-3833634 Msa0188630:intron 45.0%
TATGTAAGTAGGGGGTTAGG+AGG - chr2_1:3833830-3833849 Msa0188630:intron 45.0%
!!! TTTTGGAGTTTCGCAACTCC+TGG - chr2_1:3833897-3833916 Msa0188630:intron 45.0%
ACTATAGCAACATGCTGTCC+AGG + chr2_1:3833918-3833937 None:intergenic 45.0%
CAACAAGCATTATGGGTTCC+TGG + chr2_1:3834106-3834125 None:intergenic 45.0%
!! GCTTTAGGAGTGTGTATAGG+TGG - chr2_1:3834230-3834249 Msa0188630:CDS 45.0%
TGAAGAGCTCCACCAATTCT+TGG - chr2_1:3834521-3834540 Msa0188630:intron 45.0%
GCTGGAATTCCAAGAATTGG+TGG + chr2_1:3834533-3834552 None:intergenic 45.0%
ATCTTCCTCTTGGTCCTCAA+TGG - chr2_1:3834583-3834602 Msa0188630:intron 45.0%
TTGGTCCTCAATGGAAGCAA+CGG - chr2_1:3834592-3834611 Msa0188630:intron 45.0%
!! TCGTGTCCTTTGGTTTGTGT+TGG - chr2_1:3834753-3834772 Msa0188630:intron 45.0%
!! TGTCCTTTGGTTTGTGTTGG+AGG - chr2_1:3834756-3834775 Msa0188630:intron 45.0%
!! GGGATGAAAGGTGTTGCATA+TGG + chr2_1:3835116-3835135 None:intergenic 45.0%
CTCAACTTGCAATTGTGCTC+CGG + chr2_1:3835289-3835308 None:intergenic 45.0%
TAAAACATCCCGAGTGGGAT+GGG - chr2_1:3835376-3835395 Msa0188630:CDS 45.0%
TAGAAGCTTGGGAGCTTGTA+CGG + chr2_1:3835541-3835560 None:intergenic 45.0%
GACACAACTGAGATGACTAG+AGG - chr2_1:3835570-3835589 Msa0188630:intron 45.0%
! TGTCACTGGAGCAAGACTTT+TGG - chr2_1:3835620-3835639 Msa0188630:intron 45.0%
TCTGCTGATGAAGGCAAGAA+AGG + chr2_1:3835768-3835787 None:intergenic 45.0%
AGAGGTTGGGAAAGAAAGGA+GGG - chr2_1:3835813-3835832 Msa0188630:CDS 45.0%
! GTTTTCCTAATCAGGTAGGG+TGG - chr2_1:3835863-3835882 Msa0188630:CDS 45.0%
GATTTAAGTCCATGGGTCTC+TGG - chr2_1:3836066-3836085 Msa0188630:intron 45.0%
!! TTATAAATATATAAATATTC+CGG + chr2_1:3833403-3833422 None:intergenic 5.0%
GCAATTGGATCCATTGGTCG+TGG - chr2_1:3830292-3830311 Msa0188630:three_prime_UTR 50.0%
!! AGAGAGGTGGTTTTACCTGG+TGG - chr2_1:3830418-3830437 Msa0188630:three_prime_UTR 50.0%
GTGATAAAGGTGAACGCACC+AGG - chr2_1:3830476-3830495 Msa0188630:CDS 50.0%
!! CAAACCCTTGTTGGCTTTGG+AGG + chr2_1:3830607-3830626 None:intergenic 50.0%
GATGACCGAGCAGTTCAATC+AGG - chr2_1:3830637-3830656 Msa0188630:CDS 50.0%
CCCATCAAAAGCAAGGGTCT+TGG + chr2_1:3830750-3830769 None:intergenic 50.0%
CTCACCTTGCTAATGCAGGT+GGG + chr2_1:3830862-3830881 None:intergenic 50.0%
ACTCACCTTGCTAATGCAGG+TGG + chr2_1:3830863-3830882 None:intergenic 50.0%
TTGGGGCAGGAAAATCACGT+GGG + chr2_1:3832310-3832329 None:intergenic 50.0%
! TTTGGGGCAGGAAAATCACG+TGG + chr2_1:3832311-3832330 None:intergenic 50.0%
!! AGTTGAAGTCTCTTTGGGGC+AGG + chr2_1:3832323-3832342 None:intergenic 50.0%
GCCCCAAAGAGACTTCAACT+AGG - chr2_1:3832323-3832342 Msa0188630:intron 50.0%
TGTGAGGTATGGGTACAGTC+TGG - chr2_1:3832688-3832707 Msa0188630:CDS 50.0%
GTGAGGTATGGGTACAGTCT+GGG - chr2_1:3832689-3832708 Msa0188630:CDS 50.0%
TGAGGTATGGGTACAGTCTG+GGG - chr2_1:3832690-3832709 Msa0188630:CDS 50.0%
CGTCCTGATTCCAAACTGTG+AGG + chr2_1:3833307-3833326 None:intergenic 50.0%
! AGCTTTTGCAAGAGGAGAGG+TGG - chr2_1:3833495-3833514 Msa0188630:intron 50.0%
GTGGTTGCAGACCGTTCAAT+TGG - chr2_1:3833548-3833567 Msa0188630:intron 50.0%
AGCTTGGGCCAAAACAACAC+AGG + chr2_1:3833754-3833773 None:intergenic 50.0%
GTGTATAGGTGGTTCCCACA+AGG - chr2_1:3834241-3834260 Msa0188630:CDS 50.0%
TGGTGGAGCTCTTCAATTGG+TGG + chr2_1:3834516-3834535 None:intergenic 50.0%
TCTTGGAATTCCAGCTTCCC+AGG - chr2_1:3834538-3834557 Msa0188630:intron 50.0%
TGCTTCCATTGAGGACCAAG+AGG + chr2_1:3834591-3834610 None:intergenic 50.0%
! AGTTTAGCTTCATGGGGCCA+AGG - chr2_1:3834631-3834650 Msa0188630:intron 50.0%
ATGGTGTTCACGTAGAGCCT+TGG + chr2_1:3834651-3834670 None:intergenic 50.0%
GCTCTACGTGAACACCATAC+CGG - chr2_1:3834653-3834672 Msa0188630:intron 50.0%
CTGGACGTCTAGGTATTCAG+TGG - chr2_1:3834691-3834710 Msa0188630:intron 50.0%
CTAGGTATTCAGTGGCAGAC+TGG - chr2_1:3834699-3834718 Msa0188630:intron 50.0%
GGTCTCCGTCTCTATCTAGA+AGG - chr2_1:3835066-3835085 Msa0188630:intron 50.0%
CTCAACTGTGTTGGGAGCTA+AGG - chr2_1:3835350-3835369 Msa0188630:CDS 50.0%
AACTGTGTTGGGAGCTAAGG+AGG - chr2_1:3835353-3835372 Msa0188630:CDS 50.0%
AGGAGGTAAAACATCCCGAG+TGG - chr2_1:3835370-3835389 Msa0188630:CDS 50.0%
GGAGGTAAAACATCCCGAGT+GGG - chr2_1:3835371-3835390 Msa0188630:CDS 50.0%
GTAAAACATCCCGAGTGGGA+TGG - chr2_1:3835375-3835394 Msa0188630:CDS 50.0%
GAAAAGCCCCTGTGAAGTGT+TGG + chr2_1:3835449-3835468 None:intergenic 50.0%
TTAACATCTGCTGGACGAGG+AGG + chr2_1:3835480-3835499 None:intergenic 50.0%
AGAAGCTTGGGAGCTTGTAC+GGG + chr2_1:3835540-3835559 None:intergenic 50.0%
AGGGAGAGGTTGGGAAAGAA+AGG - chr2_1:3835809-3835828 Msa0188630:CDS 50.0%
GAGAGGTTGGGAAAGAAAGG+AGG - chr2_1:3835812-3835831 Msa0188630:CDS 50.0%
AAAGGCCACCCTACCTGATT+AGG + chr2_1:3835871-3835890 None:intergenic 50.0%
AAGGTGAACGCACCAGGTTC+AGG - chr2_1:3830482-3830501 Msa0188630:CDS 55.0%
!! CCTTGTTGGCTTTGGAGGGA+GGG + chr2_1:3830602-3830621 None:intergenic 55.0%
CCTCCCTCCAAAGCCAACAA+GGG - chr2_1:3830600-3830619 Msa0188630:CDS 55.0%
CCAGTTAAGCCGACCCTTGT+TGG + chr2_1:3830979-3830998 None:intergenic 55.0%
! CCAACAAGGGTCGGCTTAAC+TGG - chr2_1:3830976-3830995 Msa0188630:CDS 55.0%
! CAAGGGTCGGCTTAACTGGT+AGG - chr2_1:3830980-3830999 Msa0188630:CDS 55.0%
TGGCTCAAGAATCCACTCCC+TGG + chr2_1:3833630-3833649 None:intergenic 55.0%
! CGCGGATCGATTCTCCCTTT+GGG + chr2_1:3834030-3834049 None:intergenic 55.0%
! ACGCGGATCGATTCTCCCTT+TGG + chr2_1:3834031-3834050 None:intergenic 55.0%
GCATTATGGGTTCCTGGGTC+TGG + chr2_1:3834100-3834119 None:intergenic 55.0%
AATTCCAGCTTCCCAGGCAG+TGG - chr2_1:3834544-3834563 Msa0188630:intron 55.0%
ATTCCAGCTTCCCAGGCAGT+GGG - chr2_1:3834545-3834564 Msa0188630:intron 55.0%
AATACAGGTGCCCACTGCCT+GGG + chr2_1:3834558-3834577 None:intergenic 55.0%
GAGCTCCGTTGCTTCCATTG+AGG + chr2_1:3834600-3834619 None:intergenic 55.0%
GTAGGTAAGAGGCCAGTGAC+TGG - chr2_1:3835045-3835064 Msa0188630:intron 55.0%
TAGAGACGGAGACCAGTCAC+TGG + chr2_1:3835060-3835079 None:intergenic 55.0%
TCATGTGTGCACTGCTCCTG+TGG - chr2_1:3835236-3835255 Msa0188630:intron 55.0%
CACTGCTCCTGTGGAATCTG+AGG - chr2_1:3835245-3835264 Msa0188630:intron 55.0%
TGCTCCTGTGGAATCTGAGG+AGG - chr2_1:3835248-3835267 Msa0188630:intron 55.0%
AGCTCCTCCTCAGATTCCAC+AGG + chr2_1:3835255-3835274 None:intergenic 55.0%
AATTCAGCGGTCTATCCGGG+CGG - chr2_1:3835504-3835523 Msa0188630:CDS 55.0%
GAGCTTGTACGGGAACAGGA+GGG + chr2_1:3835530-3835549 None:intergenic 55.0%
TTGGGAGCTTGTACGGGAAC+AGG + chr2_1:3835534-3835553 None:intergenic 55.0%
TGAGATGACTAGAGGACCGC+AGG - chr2_1:3835578-3835597 Msa0188630:intron 55.0%
CAATAGCCAGGAGTCTCCTG+CGG + chr2_1:3835597-3835616 None:intergenic 55.0%
GCAGGAGACTCCTGGCTATT+GGG - chr2_1:3835596-3835615 Msa0188630:intron 55.0%
CCAGTGACAACCCAATAGCC+AGG + chr2_1:3835609-3835628 None:intergenic 55.0%
! CCTGGCTATTGGGTTGTCAC+TGG - chr2_1:3835606-3835625 Msa0188630:intron 55.0%
GATCATTCGCCAGAGACCCA+TGG + chr2_1:3836078-3836097 None:intergenic 55.0%
CCCTCCCTCCAAAGCCAACA+AGG - chr2_1:3830599-3830618 Msa0188630:CDS 60.0%
!! CCCTTGTTGGCTTTGGAGGG+AGG + chr2_1:3830603-3830622 None:intergenic 60.0%
GCAGGTGGGTCCCATGATGA+TGG + chr2_1:3830848-3830867 None:intergenic 60.0%
GGGACCCACCTGCATTAGCA+AGG - chr2_1:3830855-3830874 Msa0188630:CDS 60.0%
GAATACAGGTGCCCACTGCC+TGG + chr2_1:3834559-3834578 None:intergenic 60.0%
ACATCTGCTGGACGAGGAGG+CGG + chr2_1:3835477-3835496 None:intergenic 60.0%
GGAGCTTGTACGGGAACAGG+AGG + chr2_1:3835531-3835550 None:intergenic 60.0%
CGCAGGAGACTCCTGGCTAT+TGG - chr2_1:3835595-3835614 Msa0188630:intron 60.0%
TCCAGACTTGGCCCCTAGCC+CGG + chr2_1:3835406-3835425 None:intergenic 65.0%
AGAGGACCGCAGGAGACTCC+TGG - chr2_1:3835588-3835607 Msa0188630:intron 65.0%
GTGCCCACTGCCTGGGAAGC+TGG + chr2_1:3834551-3834570 None:intergenic 70.0%
CCGGGAGACCCATCCCACTC+GGG + chr2_1:3835387-3835406 None:intergenic 70.0%
CCCGAGTGGGATGGGTCTCC+CGG - chr2_1:3835384-3835403 Msa0188630:CDS 70.0%
CCCGGGAGACCCATCCCACT+CGG + chr2_1:3835388-3835407 None:intergenic 70.0%
CCGAGTGGGATGGGTCTCCC+GGG - chr2_1:3835385-3835404 Msa0188630:CDS 70.0%
TGGGATGGGTCTCCCGGGCT+AGG - chr2_1:3835390-3835409 Msa0188630:CDS 70.0%
GGGATGGGTCTCCCGGGCTA+GGG - chr2_1:3835391-3835410 Msa0188630:CDS 70.0%
! GGATGGGTCTCCCGGGCTAG+GGG - chr2_1:3835392-3835411 Msa0188630:CDS 70.0%
CCAGACTTGGCCCCTAGCCC+GGG + chr2_1:3835405-3835424 None:intergenic 70.0%
! CCCGGGCTAGGGGCCAAGTC+TGG - chr2_1:3835402-3835421 Msa0188630:CDS 75.0%
ACGGGAACAGGAGGGCCGCC+CGG + chr2_1:3835522-3835541 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 3829856 3836345 3829856 ID=Msa0188630;Name=Msa0188630
chr2_1 mRNA 3829856 3836345 3829856 ID=Msa0188630-mRNA-1;Parent=Msa0188630;Name=Msa0188630-mRNA-1;_AED=0.13;_eAED=0.13;_QI=146|0.85|0.87|1|0.85|0.75|8|602|646
chr2_1 exon 3829856 3831162 3829856 ID=Msa0188630-mRNA-1:exon:1653;Parent=Msa0188630-mRNA-1
chr2_1 exon 3831437 3831693 3831437 ID=Msa0188630-mRNA-1:exon:1652;Parent=Msa0188630-mRNA-1
chr2_1 exon 3832529 3832715 3832529 ID=Msa0188630-mRNA-1:exon:1651;Parent=Msa0188630-mRNA-1
chr2_1 exon 3832821 3832889 3832821 ID=Msa0188630-mRNA-1:exon:1650;Parent=Msa0188630-mRNA-1
chr2_1 exon 3834146 3834347 3834146 ID=Msa0188630-mRNA-1:exon:1649;Parent=Msa0188630-mRNA-1
chr2_1 exon 3835325 3835563 3835325 ID=Msa0188630-mRNA-1:exon:1648;Parent=Msa0188630-mRNA-1
chr2_1 exon 3835673 3835973 3835673 ID=Msa0188630-mRNA-1:exon:1647;Parent=Msa0188630-mRNA-1
chr2_1 exon 3836219 3836345 3836219 ID=Msa0188630-mRNA-1:exon:1646;Parent=Msa0188630-mRNA-1
chr2_1 five_prime_UTR 3836219 3836345 3836219 ID=Msa0188630-mRNA-1:five_prime_utr;Parent=Msa0188630-mRNA-1
chr2_1 five_prime_UTR 3835955 3835973 3835955 ID=Msa0188630-mRNA-1:five_prime_utr;Parent=Msa0188630-mRNA-1
chr2_1 CDS 3835673 3835954 3835673 ID=Msa0188630-mRNA-1:cds;Parent=Msa0188630-mRNA-1
chr2_1 CDS 3835325 3835563 3835325 ID=Msa0188630-mRNA-1:cds;Parent=Msa0188630-mRNA-1
chr2_1 CDS 3834146 3834347 3834146 ID=Msa0188630-mRNA-1:cds;Parent=Msa0188630-mRNA-1
chr2_1 CDS 3832821 3832889 3832821 ID=Msa0188630-mRNA-1:cds;Parent=Msa0188630-mRNA-1
chr2_1 CDS 3832529 3832715 3832529 ID=Msa0188630-mRNA-1:cds;Parent=Msa0188630-mRNA-1
chr2_1 CDS 3831437 3831693 3831437 ID=Msa0188630-mRNA-1:cds;Parent=Msa0188630-mRNA-1
chr2_1 CDS 3830458 3831162 3830458 ID=Msa0188630-mRNA-1:cds;Parent=Msa0188630-mRNA-1
chr2_1 three_prime_UTR 3829856 3830457 3829856 ID=Msa0188630-mRNA-1:three_prime_utr;Parent=Msa0188630-mRNA-1
Gene Sequence

>Msa0188630

ATGGCACCTAAAAATGAAGATGGAGCTCATAAAGCTGCTGAGATTGCAATTGGATCCATTGGTCGTGGATACGATATATCTTCTGATATAAGGCTCAAGTTTTGTAAAGGTGATTCTAATTCTAATTCTATTCATTCTCGCTTGATTGAGATGGATGAAGATAATGATGTAAGAGAGGTGGTTTTACCTGGTGGAGTTTCATTACCAAATGTTTCCAAATTAATCAAATGTGATAAAGGTGAACGCACCAGGTTCAGGTCTGATGTTTTGTCTTTTCAACAGATGACCGAGCAGTTCAATCAGGAGTTGTCTTTGACTGGCAAAATTCCCTCAGGGCTTTTCAATTCAATGTTTGAATTTTCTGGGAGTTGGCAGAAAGATGCAGCGCATACCAAGACCCTTGCTTTTGATGGGGTGTTAATTACACTTTACACTGTTGCATTAGAGAAGTCTCAGATGCTACTTTGCGATCATGTTAAGAAAGCTGTTCCATCATCATGGGACCCACCTGCATTAGCAAGGTTTATCGATACCTTTGGCACCCATGTTATTGTTGGTATGAAGATGGGAGGAAAAGATGTAATATATTTAAAGCAGGAGCACTCATCAACTCTCCAACCTGCCGATGTTCAGAAAAAATTGAAAGAAATGGCAGATAAAAGGTTTCTGGATGCCAATGGCCAATATAGCTCAGCTTCTGATCAAGTTTTCCCAAATGAAAAGTTTGGAATCAGGACGCAGAGACTAACATTTGCTAATATTAGTCCATCAAGTTCTTATTCACATAAGGAGGATATAGTAAGCTTTTGCAAGAGGAGAGGTGGAAGTGATGACAAAAATTTATCGCATAATCAGTGGTTGCAGACCGTTCAATTGGAGCCTGATGTGATCTCAATGTCCTTCATTCCAATTACCTCTCTATTAAATGGAGTTCCAGGGAGTGGATTCTTGAGCCATGCTATAAACCTTTATTTACGATATAAACCACCAATTGAAGAGCTCCACCAATTCTTGGAATTCCAGCTTCCCAGGCAGTGGGCACCTGTATTCAGTGATCTTCCTCTTGGTCCTCAATGGAAGCAACGGAGCTCTGCATCTTTACAGTTTAGCTTCATGGGGCCAAGGCTCTACGTGAACACCATACCGGTAAATCTTTATTCATCTGGACGTCTAGGTATTCAGTGGCAGACTGGAAGTGCCTCGTCTAATCATAATAAATCATGCTCGTGTCCTTTGGTTGATGTAGGTAAGAGGCCAGTGACTGGTCTCCGTCTCTATCTAGAAGGTAAGAAAAGCAATCGGTTGGCCATCCATATGCAACACCTTTCATCCCTTCCAAAAATCTTCCAGCTTGAAGATGATCCAAATGAAAACTTCAGACGAAAGTCCTATGATAAGAGATTCTATGAGAAGGTTCAATGGAAGAATTTCTCTCATGTGTGCACTGCTCCTGTGGAATCTGAGGAGGAGCTTTCAATAGTAACCGGAGCACAATTGCAAGTTGAGAATTATGGCTTTAAAAATATACTCTTCTTAAGACTTAAATTCTCAACTGTGTTGGGAGCTAAGGAGGTAAAACATCCCGAGTGGGATGGGTCTCCCGGGCTAGGGGCCAAGTCTGGACTTATATCCACTCTTATTAGCCAACACTTCACAGGGGCTTTTCAGAAGCCGCCTCCTCGTCCAGCAGATGTTAATATAAATTCAGCGGTCTATCCGGGCGGCCCTCCTGTTCCCGTACAAGCTCCCAAGCTTCTAAAATTTGTTGACACAACTGAGATGACTAGAGGACCGCAGGAGACTCCTGGCTATTGGGTTGTCACTGGAGCAAGACTTTTGGTTGAGAAGGGAAAAATTTCTTTACGGGTTAAGTATTCTTTGTTGACTATGATATTACCGGATGATGATGATGATTATGATGACACGTTGGATGATCAGTAG

Protein sequence

>Msa0188630

MAPKNEDGAHKAAEIAIGSIGRGYDISSDIRLKFCKGDSNSNSIHSRLIEMDEDNDVREVVLPGGVSLPNVSKLIKCDKGERTRFRSDVLSFQQMTEQFNQELSLTGKIPSGLFNSMFEFSGSWQKDAAHTKTLAFDGVLITLYTVALEKSQMLLCDHVKKAVPSSWDPPALARFIDTFGTHVIVGMKMGGKDVIYLKQEHSSTLQPADVQKKLKEMADKRFLDANGQYSSASDQVFPNEKFGIRTQRLTFANISPSSSYSHKEDIVSFCKRRGGSDDKNLSHNQWLQTVQLEPDVISMSFIPITSLLNGVPGSGFLSHAINLYLRYKPPIEELHQFLEFQLPRQWAPVFSDLPLGPQWKQRSSASLQFSFMGPRLYVNTIPVNLYSSGRLGIQWQTGSASSNHNKSCSCPLVDVGKRPVTGLRLYLEGKKSNRLAIHMQHLSSLPKIFQLEDDPNENFRRKSYDKRFYEKVQWKNFSHVCTAPVESEEELSIVTGAQLQVENYGFKNILFLRLKFSTVLGAKEVKHPEWDGSPGLGAKSGLISTLISQHFTGAFQKPPPRPADVNINSAVYPGGPPVPVQAPKLLKFVDTTEMTRGPQETPGYWVVTGARLLVEKGKISLRVKYSLLTMILPDDDDDYDDTLDDQ*