AlfalfaGEDB | Msa0002250

M. sativa cultivar zhongmu-4 / Msa0002250

KEGG: -
GO: -
PFAM: PF14226.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0002250	XP_013444751.1	92.697	178	12	1	1	177	1	178	4.95e-116	343

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0002250	sp\|Q9LTH7\|ACH12_ARATH	56.287	167	67	3	17	177	14	180	1.90e-59	192

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002250	Msa0032080	0.809057	2.283558e-50	-8.615850e-47
Msa0002250	Msa0061220	0.818322	2.082726e-52	-8.615850e-47
Msa0002250	Msa0061500	0.813005	3.185859e-51	-8.615850e-47
Msa0002250	Msa0089730	0.811101	8.282734e-51	-8.615850e-47
Msa0002250	Msa0092410	0.800104	1.685218e-48	-8.615850e-47
Msa0002250	Msa0117520	0.822154	2.757291e-53	-8.615850e-47
Msa0002250	Msa0130850	0.807115	5.918577e-50	-8.615850e-47
Msa0002250	Msa0136630	0.820979	5.152675e-53	-8.615850e-47
Msa0002250	Msa0138020	0.807800	4.234181e-50	-8.615850e-47
Msa0002250	Msa0152560	0.810272	1.251788e-50	-8.615850e-47
Msa0002250	Msa0160960	0.830242	3.278690e-55	-8.615850e-47
Msa0002250	Msa0187310	0.808587	2.878097e-50	-8.615850e-47
Msa0002250	Msa0240270	0.805513	1.287499e-49	-8.615850e-47
Msa0002250	Msa0269560	0.814359	1.603801e-51	-8.615850e-47
Msa0002250	Msa0278580	0.816754	4.697483e-52	-8.615850e-47
Msa0002250	Msa0317960	0.803113	4.070013e-49	-8.615850e-47
Msa0002250	Msa0319020	0.815540	8.775439e-52	-8.615850e-47
Msa0002250	Msa0331020	0.808969	2.384723e-50	-8.615850e-47
Msa0002250	Msa0371950	0.801363	9.327748e-49	-8.615850e-47
Msa0002250	Msa0380600	0.809813	1.571677e-50	-8.615850e-47
Msa0002250	Msa0382370	0.805751	1.147737e-49	-8.615850e-47
Msa0002250	Msa0388360	0.803559	3.290592e-49	-8.615850e-47
Msa0002250	Msa0388730	0.823817	1.129148e-53	-8.615850e-47
Msa0002250	Msa0427580	0.811953	5.409032e-51	-8.615850e-47
Msa0002250	Msa0430240	0.810004	1.429677e-50	-8.615850e-47
Msa0002250	Msa0432160	0.803913	2.777824e-49	-8.615850e-47
Msa0002250	Msa0476680	0.810395	1.177745e-50	-8.615850e-47
Msa0002250	Msa0484630	0.823384	1.425931e-53	-8.615850e-47
Msa0002250	Msa0518170	0.817166	3.795941e-52	-8.615850e-47
Msa0002250	Msa0519160	0.838018	3.689895e-57	-8.615850e-47
Msa0002250	Msa0521010	0.813234	2.838170e-51	-8.615850e-47
Msa0002250	Msa0545050	0.819379	1.197991e-52	-8.615850e-47
Msa0002250	Msa0573890	0.814848	1.249936e-51	-8.615850e-47
Msa0002250	Msa0581400	0.803747	3.007286e-49	-8.615850e-47
Msa0002250	Msa0600590	0.823390	1.421147e-53	-8.615850e-47
Msa0002250	Msa0641130	0.824598	7.401883e-54	-8.615850e-47
Msa0002250	Msa0711150	0.839068	1.975906e-57	-8.615850e-47
Msa0002250	Msa0743870	0.830241	3.280683e-55	-8.615850e-47
Msa0002250	Msa0750810	0.800877	1.172622e-48	-8.615850e-47
Msa0002250	Msa0750850	0.800006	1.764195e-48	-8.615850e-47
Msa0002250	Msa0831130	0.812894	3.368716e-51	-8.615850e-47
Msa0002250	Msa0844110	0.807523	4.850074e-50	-8.615850e-47
Msa0002250	Msa0863990	0.804300	2.307928e-49	-8.615850e-47
Msa0002250	Msa0894710	0.807805	4.225186e-50	-8.615850e-47
Msa0002250	Msa0960390	0.811177	7.976181e-51	-8.615850e-47
Msa0002250	Msa0994910	0.814412	1.561069e-51	-8.615850e-47
Msa0002250	Msa1013070	0.821257	4.445518e-53	-8.615850e-47
Msa0002250	Msa1023310	0.817867	2.639709e-52	-8.615850e-47
Msa0002250	Msa1042660	0.801466	8.887583e-49	-8.615850e-47
Msa0002250	Msa1054510	0.831830	1.335953e-55	-8.615850e-47
Msa0002250	Msa1062040	0.805113	1.561359e-49	-8.615850e-47
Msa0002250	Msa1089460	0.805640	1.210733e-49	-8.615850e-47
Msa0002250	Msa1093100	0.803460	3.449043e-49	-8.615850e-47
Msa0002250	Msa1094280	0.816520	5.300824e-52	-8.615850e-47
Msa0002250	Msa1107200	0.820709	5.943999e-53	-8.615850e-47
Msa0002250	Msa1109810	0.820838	5.552269e-53	-8.615850e-47
Msa0002250	Msa1150780	0.810381	1.185572e-50	-8.615850e-47
Msa0002250	Msa1184790	0.815204	1.041894e-51	-8.615850e-47
Msa0002250	Msa1212050	0.831357	1.747914e-55	-8.615850e-47
Msa0002250	Msa1212130	0.808224	3.440921e-50	-8.615850e-47
Msa0002250	Msa1221330	0.817295	3.551016e-52	-8.615850e-47
Msa0002250	Msa1239620	0.806826	6.812694e-50	-8.615850e-47
Msa0002250	Msa1259860	0.812950	3.274729e-51	-8.615850e-47
Msa0002250	Msa1270660	0.825426	4.717837e-54	-8.615850e-47
Msa0002250	Msa1270730	0.822383	2.438941e-53	-8.615850e-47
Msa0002250	Msa1280170	0.824736	6.868897e-54	-8.615850e-47
Msa0002250	Msa1291450	0.801073	1.069159e-48	-8.615850e-47
Msa0002250	Msa1335230	0.832095	1.149602e-55	-8.615850e-47
Msa0002250	Msa1337310	0.805426	1.342435e-49	-8.615850e-47
Msa0002250	Msa1338400	0.837191	6.014019e-57	-8.615850e-47
Msa0002250	Msa1355890	0.819759	9.813490e-53	-8.615850e-47
Msa0002250	Msa1369920	-0.817067	3.997239e-52	-8.615850e-47
Msa0002250	Msa1380220	0.825772	3.906981e-54	-8.615850e-47
Msa0002250	Msa1386890	0.807818	4.197757e-50	-8.615850e-47
Msa0002250	Msa1400930	0.813291	2.757740e-51	-8.615850e-47
Msa0002250	Msa1419840	0.807819	4.195986e-50	-8.615850e-47
Msa0002250	Msa1423820	0.807596	4.678917e-50	-8.615850e-47
Msa0002250	Msa1430130	0.816286	5.979641e-52	-8.615850e-47
Msa0002250	Msa1430550	0.803630	3.181264e-49	-8.615850e-47
Msa0002250	Msa1457160	0.804017	2.643450e-49	-8.615850e-47
Msa0002250	Msa1460750	0.813571	2.392621e-51	-8.615850e-47
Msa0002250	Msa1465210	0.813218	2.860657e-51	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0002250	MtrunA17_Chr8g0348081	92.697	178	12	1	1	177	1	178	4.55e-120	343
Msa0002250	MtrunA17_Chr8g0336851	83.146	178	29	1	1	177	1	178	1.08e-106	310
Msa0002250	MtrunA17_Chr8g0336631	80.447	179	33	2	1	177	1	179	6.21e-105	305
Msa0002250	MtrunA17_Chr8g0336761	80.682	176	33	1	1	175	1	176	4.89e-104	303
Msa0002250	MtrunA17_Chr8g0336781	81.006	179	32	2	1	177	36	214	1.29e-103	303
Msa0002250	MtrunA17_Chr8g0336791	79.330	179	35	2	1	177	1	179	8.32e-102	291
Msa0002250	MtrunA17_Chr8g0336831	78.771	179	36	2	1	177	1	179	3.52e-100	289
Msa0002250	MtrunA17_Chr4g0066121	77.401	177	38	2	1	175	1	177	2.33e-98	288
Msa0002250	MtrunA17_Chr8g0336861	78.771	179	36	2	1	177	1	179	4.34e-98	288
Msa0002250	MtrunA17_Chr2g0311761	68.293	164	49	1	15	175	20	183	8.06e-79	239
Msa0002250	MtrunA17_Chr2g0311831	64.634	164	55	1	15	175	20	183	2.74e-75	230
Msa0002250	MtrunA17_Chr2g0311921	63.190	163	57	1	15	174	6	168	6.22e-74	226
Msa0002250	MtrunA17_Chr8g0336751	57.143	175	71	3	6	177	38	211	2.49e-63	200
Msa0002250	MtrunA17_Chr2g0311861	54.802	177	56	3	2	175	4	159	1.95e-60	191
Msa0002250	MtrunA17_Chr1g0167951	55.696	158	68	2	19	175	11	167	4.28e-60	191
Msa0002250	MtrunA17_Chr1g0167911	53.374	163	73	2	15	175	7	168	4.58e-60	191
Msa0002250	MtrunA17_Chr1g0168001	52.410	166	70	3	15	172	7	171	2.57e-57	177
Msa0002250	MtrunA17_Chr1g0167961	53.614	166	73	3	15	177	22	186	5.55e-57	183
Msa0002250	MtrunA17_Chr8g0354261	49.102	167	76	3	17	176	22	186	3.87e-50	166
Msa0002250	MtrunA17_Chr8g0354241	49.102	167	76	3	17	176	22	186	4.80e-50	165
Msa0002250	MtrunA17_Chr1g0187811	46.552	174	78	3	15	175	132	303	6.41e-49	165
Msa0002250	MtrunA17_Chr1g0187821	43.373	166	88	2	17	176	18	183	1.58e-48	161
Msa0002250	MtrunA17_Chr8g0335411	44.512	164	85	2	17	176	22	183	2.36e-47	158
Msa0002250	MtrunA17_Chr7g0235951	44.242	165	86	2	16	176	21	183	5.38e-47	157
Msa0002250	MtrunA17_Chr1g0187831	44.706	170	82	3	17	176	19	186	1.11e-46	157
Msa0002250	MtrunA17_Chr7g0247991	44.512	164	85	2	17	176	22	183	7.99e-46	154
Msa0002250	MtrunA17_Chr8g0364161	41.420	169	87	2	16	177	21	184	1.80e-44	145
Msa0002250	MtrunA17_Chr8g0364471	40.217	184	97	3	1	175	3	182	2.15e-44	150
Msa0002250	MtrunA17_Chr2g0311711	43.902	164	88	2	16	175	19	182	2.69e-44	150
Msa0002250	MtrunA17_Chr4g0011311	42.236	161	91	2	17	175	22	182	3.05e-44	149
Msa0002250	MtrunA17_Chr6g0472861	45.304	181	84	3	15	183	15	192	4.57e-44	150
Msa0002250	MtrunA17_Chr4g0055591	44.242	165	77	3	19	176	16	172	1.29e-43	148
Msa0002250	MtrunA17_Chr2g0311701	43.293	164	89	2	16	175	21	184	1.38e-43	149
Msa0002250	MtrunA17_Chr7g0225881	42.353	170	88	2	15	177	15	181	2.98e-42	145
Msa0002250	MtrunA17_Chr2g0311681	42.424	165	91	2	16	176	15	179	6.85e-42	144
Msa0002250	MtrunA17_Chr2g0311691	43.030	165	90	2	16	176	15	179	3.09e-41	142
Msa0002250	MtrunA17_Chr7g0236011	42.073	164	85	4	17	174	22	181	7.90e-41	141
Msa0002250	MtrunA17_Chr4g0066991	38.788	165	75	3	17	177	22	164	4.82e-36	128
Msa0002250	MtrunA17_Chr7g0266651	38.217	157	93	2	19	172	15	170	3.21e-35	126
Msa0002250	MtrunA17_Chr8g0362741	41.290	155	75	4	17	169	22	162	3.57e-35	124
Msa0002250	MtrunA17_Chr1g0184241	39.877	163	93	2	17	176	23	183	4.09e-35	126
Msa0002250	MtrunA17_Chr2g0311741	46.341	123	66	0	55	177	22	144	2.03e-34	123
Msa0002250	MtrunA17_Chr2g0311751	43.902	123	69	0	55	177	22	144	9.78e-33	115
Msa0002250	MtrunA17_Chr1g0167931	38.182	165	61	2	15	177	7	132	3.15e-31	115
Msa0002250	MtrunA17_Chr1g0161081	36.709	158	93	2	19	172	28	182	1.56e-30	114
Msa0002250	MtrunA17_Chr1g0161041	37.342	158	92	2	19	172	51	205	3.80e-30	113
Msa0002250	MtrunA17_Chr1g0161111	34.682	173	105	3	4	172	73	241	1.11e-29	112
Msa0002250	MtrunA17_Chr7g0235991	37.681	138	80	2	42	175	1	136	1.09e-27	102
Msa0002250	MtrunA17_Chr7g0235981	34.146	164	76	4	21	183	12	144	3.26e-22	91.3
Msa0002250	MtrunA17_Chr2g0311621	41.237	97	54	2	27	122	21	115	6.26e-18	75.5
Msa0002250	MtrunA17_Chr7g0242551	29.936	157	101	4	14	162	1	156	8.69e-18	79.7
Msa0002250	MtrunA17_Chr2g0311641	35.659	129	77	4	27	152	21	146	9.78e-18	76.3
Msa0002250	MtrunA17_Chr8g0375571	34.266	143	89	4	27	165	10	151	1.83e-17	78.6
Msa0002250	MtrunA17_Chr2g0311631	33.125	160	100	5	27	183	21	176	1.96e-17	78.6
Msa0002250	MtrunA17_Chr8g0375661	30.872	149	94	6	27	169	17	162	3.68e-15	69.7
Msa0002250	MtrunA17_Chr1g0179801	31.613	155	92	5	27	170	26	177	6.19e-15	71.6
Msa0002250	MtrunA17_Chr8g0345831	31.304	115	76	2	46	160	29	140	1.07e-14	70.9
Msa0002250	MtrunA17_Chr8g0375641	30.872	149	94	6	27	169	17	162	1.34e-14	68.6
Msa0002250	MtrunA17_Chr8g0375601	30.519	154	93	6	28	170	11	161	1.36e-14	70.9
Msa0002250	MtrunA17_Chr5g0420891	28.302	159	105	5	28	182	12	165	4.01e-14	66.6
Msa0002250	MtrunA17_Chr8g0375591	35.849	106	64	3	28	129	11	116	4.38e-14	65.9
Msa0002250	MtrunA17_Chr8g0375671	30.935	139	88	5	28	161	18	153	4.73e-14	68.9
Msa0002250	MtrunA17_Chr3g0093741	30.323	155	95	3	27	174	17	165	6.39e-14	68.6
Msa0002250	MtrunA17_Chr5g0426891	26.531	147	104	3	27	169	3	149	7.76e-14	68.6
Msa0002250	MtrunA17_Chr3g0128001	33.663	101	62	1	60	160	38	133	8.49e-14	68.2
Msa0002250	MtrunA17_Chr5g0423211	30.769	130	82	4	28	154	13	137	1.06e-13	68.2
Msa0002250	MtrunA17_Chr8g0371921	32.174	115	74	3	48	160	26	138	1.49e-13	67.8
Msa0002250	MtrunA17_Chr3g0093751	32.331	133	77	3	27	152	17	143	2.06e-13	67.4
Msa0002250	MtrunA17_Chr5g0423201	26.490	151	96	3	27	165	12	159	2.43e-13	67.0
Msa0002250	MtrunA17_Chr4g0006371	31.667	120	75	4	43	160	48	162	3.24e-13	66.6
Msa0002250	MtrunA17_Chr3g0126741	29.310	174	108	5	1	169	7	170	3.70e-13	66.6
Msa0002250	MtrunA17_Chr5g0421091	29.139	151	89	5	28	165	11	156	6.32e-13	65.9
Msa0002250	MtrunA17_Chr5g0421041	28.667	150	91	4	27	165	12	156	7.21e-13	65.9
Msa0002250	MtrunA17_Chr1g0184161	33.043	115	70	4	46	157	26	136	1.21e-12	65.1
Msa0002250	MtrunA17_Chr5g0420901	29.730	148	95	5	28	171	12	154	1.87e-12	64.3
Msa0002250	MtrunA17_Chr3g0113641	25.166	151	108	3	14	160	1	150	2.14e-12	64.3
Msa0002250	MtrunA17_Chr5g0421101	33.333	147	87	7	28	169	13	153	2.43e-12	64.3
Msa0002250	MtrunA17_Chr1g0184121	33.636	110	68	3	46	154	25	130	3.03e-12	63.9
Msa0002250	MtrunA17_Chr7g0239101	28.261	138	88	4	28	160	20	151	3.35e-12	63.9
Msa0002250	MtrunA17_Chr1g0162361	33.333	105	61	4	60	164	27	122	5.22e-12	63.2
Msa0002250	MtrunA17_Chr7g0250511	26.316	133	94	2	31	160	17	148	5.70e-12	63.2
Msa0002250	MtrunA17_Chr1g0184151	36.364	99	60	2	57	154	35	131	6.23e-12	62.8
Msa0002250	MtrunA17_Chr5g0412651	34.444	90	57	1	44	133	24	111	6.97e-12	62.8
Msa0002250	MtrunA17_Chr3g0093761	32.090	134	75	5	27	152	17	142	7.58e-12	62.8
Msa0002250	MtrunA17_Chr5g0412671	34.444	90	57	1	44	133	24	111	7.98e-12	62.8
Msa0002250	MtrunA17_Chr5g0421011	29.197	137	89	4	27	160	12	143	8.27e-12	62.8
Msa0002250	MtrunA17_Chr7g0239121	31.429	105	68	3	57	161	48	148	8.50e-12	62.8
Msa0002250	MtrunA17_Chr3g0109041	28.244	131	88	3	28	154	10	138	9.40e-12	62.4
Msa0002250	MtrunA17_Chr5g0423221	28.378	148	99	4	27	171	36	179	1.27e-11	62.0
Msa0002250	MtrunA17_Chr5g0412681	35.556	90	48	2	44	133	19	98	1.34e-11	62.0
Msa0002250	MtrunA17_Chr7g0239111	30.476	105	69	2	57	161	52	152	1.76e-11	61.6
Msa0002250	MtrunA17_Chr1g0184111	31.818	110	70	3	46	154	25	130	1.87e-11	61.6
Msa0002250	MtrunA17_Chr1g0170641	33.766	77	51	0	60	136	45	121	2.41e-11	59.3
Msa0002250	MtrunA17_Chr1g0162191	29.412	102	70	2	60	161	47	146	2.98e-11	61.2
Msa0002250	MtrunA17_Chr5g0420951	26.797	153	106	3	11	160	1	150	2.99e-11	61.2
Msa0002250	MtrunA17_Chr7g0265351	28.333	120	81	1	55	174	34	148	3.42e-11	60.8
Msa0002250	MtrunA17_Chr5g0423251	28.676	136	91	4	27	160	12	143	3.94e-11	60.8
Msa0002250	MtrunA17_Chr2g0311821	39.785	93	50	2	64	154	11	99	7.66e-11	57.4
Msa0002250	MtrunA17_Chr5g0437181	30.159	126	80	4	56	175	45	168	9.60e-11	59.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0002250	AT5G59540.2	56.287	167	67	3	17	177	14	180	4.05e-61	191
Msa0002250	AT5G59540.1	56.287	167	67	3	17	177	14	180	1.93e-60	192
Msa0002250	AT1G06640.3	53.254	169	72	3	16	177	14	182	2.66e-59	187
Msa0002250	AT1G06640.2	53.892	167	70	3	16	175	14	180	5.15e-59	187
Msa0002250	AT1G06640.1	53.254	169	72	3	16	177	14	182	1.75e-58	187
Msa0002250	AT1G06650.1	50.888	169	76	3	16	177	14	182	1.97e-57	183
Msa0002250	AT1G06650.2	50.888	169	76	3	16	177	14	182	9.82e-57	182
Msa0002250	AT1G06620.2	50.000	160	77	1	19	175	18	177	2.81e-56	179
Msa0002250	AT1G06620.1	50.000	160	77	1	19	175	18	177	2.69e-55	179
Msa0002250	AT1G04350.1	50.898	167	74	3	16	177	10	173	7.94e-55	177
Msa0002250	AT2G30840.2	47.619	168	82	2	16	177	9	176	1.01e-52	171
Msa0002250	AT2G30840.1	47.619	168	82	2	16	177	9	176	2.46e-52	171
Msa0002250	AT2G30840.3	47.619	168	82	2	16	177	9	176	2.72e-52	171
Msa0002250	AT5G43440.2	49.123	171	77	4	15	177	11	179	8.15e-52	168
Msa0002250	AT2G25450.1	48.171	164	83	1	16	177	9	172	3.84e-51	168
Msa0002250	AT5G43440.1	49.123	171	77	4	15	177	11	179	5.10e-51	168
Msa0002250	AT5G59530.1	53.012	166	69	5	17	175	13	176	5.97e-51	167
Msa0002250	AT2G30830.1	48.171	164	83	2	16	177	9	172	6.63e-51	167
Msa0002250	AT1G03410.2	47.337	169	81	4	16	177	8	175	2.72e-50	166
Msa0002250	AT1G06645.1	50.303	165	74	4	4	161	16	179	3.91e-50	166
Msa0002250	AT1G03410.1	47.337	169	81	4	16	177	45	212	6.64e-50	166
Msa0002250	AT5G43450.2	45.181	166	78	3	15	172	11	171	9.71e-49	160
Msa0002250	AT5G43450.1	45.181	166	78	3	15	172	11	171	4.46e-48	160
Msa0002250	AT3G61400.2	43.850	187	90	5	1	177	1	182	1.61e-47	157
Msa0002250	AT3G61400.1	43.850	187	90	5	1	177	1	182	5.38e-47	157
Msa0002250	AT1G04380.2	45.963	161	70	4	16	175	13	157	3.78e-45	150
Msa0002250	AT1G04380.1	45.963	161	70	4	16	175	13	157	2.24e-44	150
Msa0002250	AT1G03400.1	44.048	168	78	4	16	177	8	165	1.87e-42	145
Msa0002250	AT1G03400.2	44.048	168	78	4	16	177	8	165	4.18e-42	145
Msa0002250	AT3G13610.1	30.769	156	97	5	27	177	26	175	6.28e-19	83.2
Msa0002250	AT1G55290.1	31.447	159	93	4	27	177	25	175	3.29e-18	81.3
Msa0002250	AT2G36690.2	32.639	144	87	3	25	160	18	159	1.44e-16	76.6
Msa0002250	AT2G36690.1	32.639	144	87	3	25	160	18	159	1.44e-16	76.6
Msa0002250	AT3G12900.1	31.410	156	98	5	27	177	21	172	2.14e-16	76.3
Msa0002250	AT4G10500.1	33.333	93	60	1	60	152	44	134	1.24e-13	68.2
Msa0002250	AT4G10490.1	28.713	101	70	1	60	160	42	140	1.25e-12	65.5
Msa0002250	AT3G19000.2	27.517	149	94	5	30	170	2	144	1.72e-12	64.7
Msa0002250	AT2G38240.1	27.703	148	96	4	20	162	4	145	1.95e-12	64.7
Msa0002250	AT3G19000.1	27.517	149	94	5	30	170	2	144	3.06e-12	64.3
Msa0002250	AT4G25300.1	31.452	124	79	4	40	160	30	150	3.98e-12	63.9
Msa0002250	AT3G19010.2	30.508	118	73	3	55	167	23	136	5.01e-12	63.5
Msa0002250	AT3G19010.3	30.508	118	73	3	55	167	23	136	6.82e-12	63.2
Msa0002250	AT3G19010.1	30.508	118	73	3	55	167	23	136	7.60e-12	63.2
Msa0002250	AT3G19010.4	30.508	118	73	3	55	167	23	136	7.60e-12	63.2
Msa0002250	AT5G05600.2	27.358	106	75	2	56	160	58	162	9.06e-12	62.8
Msa0002250	AT5G24530.1	31.000	100	64	1	61	160	39	133	1.03e-11	62.8
Msa0002250	AT5G05600.1	27.358	106	75	2	56	160	58	162	1.34e-11	62.4
Msa0002250	AT2G44800.1	26.389	144	101	3	21	160	9	151	4.79e-11	60.8
Msa0002250	AT1G77330.1	36.842	76	35	2	59	134	2	64	6.36e-11	60.5
Msa0002250	AT3G11180.2	27.500	120	77	3	41	160	82	191	8.65e-11	60.1
Msa0002250	AT3G11180.1	27.500	120	77	3	41	160	82	191	8.70e-11	60.1

Find 36 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATAGCTCACCAGCACTTAAT+TGG	0.240215	1_1:-4088148	Msa0002250:CDS
AAAATTGCTATTATAAATAA+AGG	0.284707	1_1:+4088178	None:intergenic
GAAACAAAAGCTGGTGTAAA+AGG	0.293999	1_1:-4088509	Msa0002250:CDS
TCTTCTGGTTTGGGAGTATC+AGG	0.295482	1_1:+4088098	None:intergenic
AATTAATATATCTTAAAATA+AGG	0.302151	1_1:+4087600	None:intergenic
ATCAGGTTGATGATGGAATA+AGG	0.321050	1_1:+4088454	None:intergenic
TAGGCTAACTCATATTTATC+AGG	0.330157	1_1:+4088437	None:intergenic
TATAGGAATATCTTCTGGTT+TGG	0.355865	1_1:+4088088	None:intergenic
AATAACATGGCTTGTGTTGT+AGG	0.361872	1_1:+4088418	None:intergenic
ATAGGAATATCTTCTGGTTT+GGG	0.365035	1_1:+4088089	None:intergenic
AGTTGAAAGATGGTGTTAAG+AGG	0.407849	1_1:-4088259	Msa0002250:CDS
CATATTTATCAGGTTGATGA+TGG	0.411678	1_1:+4088447	None:intergenic
CATACTATAGGAATATCTTC+TGG	0.435826	1_1:+4088083	None:intergenic
TACATATACCTGCATACTAT+AGG	0.463744	1_1:+4088071	None:intergenic
GTTCATTCAATATAGAATCA+AGG	0.486469	1_1:+4088546	None:intergenic
GGTTGATGATGGAATAAGGT+AGG	0.489286	1_1:+4088458	None:intergenic
TTCAATATAGAATCAAGGTT+AGG	0.490953	1_1:+4088551	None:intergenic
AACTCCTCAAGAACACTCAA+AGG	0.516232	1_1:+4088278	None:intergenic
TATAGAATCAAGGTTAGGCT+TGG	0.520854	1_1:+4088556	None:intergenic
ACTCCTCAAGAACACTCAAA+GGG	0.527377	1_1:+4088279	None:intergenic
TGAAGGAAGCATGTGAAACA+TGG	0.532384	1_1:-4088331	Msa0002250:CDS
AAGATATTCCTATAGTATGC+AGG	0.538473	1_1:-4088079	Msa0002250:intron
GTATCCCTCCAATTAAGTGC+TGG	0.539300	1_1:+4088140	None:intergenic
AATCCCTTTGAGTGTTCTTG+AGG	0.545874	1_1:-4088282	Msa0002250:CDS
GCTCACCAGCACTTAATTGG+AGG	0.561497	1_1:-4088145	Msa0002250:CDS
GTTCTTGAGGAGTTGAAAGA+TGG	0.561567	1_1:-4088269	Msa0002250:CDS
ATATCTGCAAGGTCTATGAC+AGG	0.576610	1_1:+4088395	None:intergenic
GCATTTGATGAAACAAAAGC+TGG	0.578863	1_1:-4088518	Msa0002250:CDS
GTTGATGATGGAATAAGGTA+GGG	0.587595	1_1:+4088459	None:intergenic
GTAAAAGGCCTTGTTGATGA+AGG	0.592109	1_1:-4088494	Msa0002250:CDS
GAAGGAAGCATGTGAAACAT+GGG	0.600229	1_1:-4088330	Msa0002250:CDS
CTTTGTTATCAATATCTGCA+AGG	0.600509	1_1:+4088384	None:intergenic
CTCACCAGCACTTAATTGGA+GGG	0.611496	1_1:-4088144	Msa0002250:CDS
TCTTAAGTCCTTCATCAACA+AGG	0.630268	1_1:+4088486	None:intergenic
GGTCTATGACAGGAATAACA+TGG	0.684175	1_1:+4088405	None:intergenic
AAGGAAGCATGTGAAACATG+GGG	0.690006	1_1:-4088329	Msa0002250:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	AAAATTGCTATTATAAATAA+AGG	+	chr1_1:4088002-4088021	None:intergenic	10.0%
!!	TTAAGTTAAATACTTAAATT+TGG	-	chr1_1:4088357-4088376	Msa0002250:CDS	10.0%
!!!	AAAATTGCTATTATAAATAA+AGG	+	chr1_1:4088002-4088021	None:intergenic	10.0%
!!	TTAAGTTAAATACTTAAATT+TGG	-	chr1_1:4088357-4088376	Msa0002250:CDS	10.0%
!!!	TTTTTTCAAGTTGTTAATCA+TGG	-	chr1_1:4087872-4087891	Msa0002250:intron	20.0%
!!	TTTATGTACTATTTCAACTT+TGG	-	chr1_1:4088144-4088163	Msa0002250:CDS	20.0%
!!	CGGTTAGAAAATATAAAATA+TGG	+	chr1_1:4088274-4088293	None:intergenic	20.0%
!!!	TTTTTTCAAGTTGTTAATCA+TGG	-	chr1_1:4087872-4087891	Msa0002250:intron	20.0%
!!	TTTATGTACTATTTCAACTT+TGG	-	chr1_1:4088144-4088163	Msa0002250:CDS	20.0%
!!	CGGTTAGAAAATATAAAATA+TGG	+	chr1_1:4088274-4088293	None:intergenic	20.0%
!	TTCAATATAGAATCAAGGTT+AGG	+	chr1_1:4087629-4087648	None:intergenic	25.0%
!	GTTCATTCAATATAGAATCA+AGG	+	chr1_1:4087634-4087653	None:intergenic	25.0%
!!!	TCACTTTGTCAACAATTTTT+TGG	+	chr1_1:4087829-4087848	None:intergenic	25.0%
!	AAAAATTGTTGACAAAGTGA+AGG	-	chr1_1:4087829-4087848	Msa0002250:intron	25.0%
!!	GGATACTTTTATATGTTACT+TGG	-	chr1_1:4088054-4088073	Msa0002250:intron	25.0%
!	TGAACAAATTGAAGAAACAA+CGG	-	chr1_1:4088389-4088408	Msa0002250:CDS	25.0%
!	TTCAATATAGAATCAAGGTT+AGG	+	chr1_1:4087629-4087648	None:intergenic	25.0%
!	GTTCATTCAATATAGAATCA+AGG	+	chr1_1:4087634-4087653	None:intergenic	25.0%
!!!	TCACTTTGTCAACAATTTTT+TGG	+	chr1_1:4087829-4087848	None:intergenic	25.0%
!	AAAAATTGTTGACAAAGTGA+AGG	-	chr1_1:4087829-4087848	Msa0002250:intron	25.0%
!!	GGATACTTTTATATGTTACT+TGG	-	chr1_1:4088054-4088073	Msa0002250:intron	25.0%
!	TGAACAAATTGAAGAAACAA+CGG	-	chr1_1:4088389-4088408	Msa0002250:CDS	25.0%
!!	CATATTTATCAGGTTGATGA+TGG	+	chr1_1:4087733-4087752	None:intergenic	30.0%
	TAGGCTAACTCATATTTATC+AGG	+	chr1_1:4087743-4087762	None:intergenic	30.0%
!	CTTTGTTATCAATATCTGCA+AGG	+	chr1_1:4087796-4087815	None:intergenic	30.0%
!!	ATAGGAATATCTTCTGGTTT+GGG	+	chr1_1:4088091-4088110	None:intergenic	30.0%
!	TATAGGAATATCTTCTGGTT+TGG	+	chr1_1:4088092-4088111	None:intergenic	30.0%
	CATACTATAGGAATATCTTC+TGG	+	chr1_1:4088097-4088116	None:intergenic	30.0%
	AAGATATTCCTATAGTATGC+AGG	-	chr1_1:4088098-4088117	Msa0002250:CDS	30.0%
	TACATATACCTGCATACTAT+AGG	+	chr1_1:4088109-4088128	None:intergenic	30.0%
	GGTATAATTGAATGTAACCA+TGG	+	chr1_1:4088253-4088272	None:intergenic	30.0%
!!	CATATTTATCAGGTTGATGA+TGG	+	chr1_1:4087733-4087752	None:intergenic	30.0%
	TAGGCTAACTCATATTTATC+AGG	+	chr1_1:4087743-4087762	None:intergenic	30.0%
!	CTTTGTTATCAATATCTGCA+AGG	+	chr1_1:4087796-4087815	None:intergenic	30.0%
!!	ATAGGAATATCTTCTGGTTT+GGG	+	chr1_1:4088091-4088110	None:intergenic	30.0%
!	TATAGGAATATCTTCTGGTT+TGG	+	chr1_1:4088092-4088111	None:intergenic	30.0%
	CATACTATAGGAATATCTTC+TGG	+	chr1_1:4088097-4088116	None:intergenic	30.0%
	AAGATATTCCTATAGTATGC+AGG	-	chr1_1:4088098-4088117	Msa0002250:CDS	30.0%
	TACATATACCTGCATACTAT+AGG	+	chr1_1:4088109-4088128	None:intergenic	30.0%
	GGTATAATTGAATGTAACCA+TGG	+	chr1_1:4088253-4088272	None:intergenic	30.0%
	TATAGAATCAAGGTTAGGCT+TGG	+	chr1_1:4087624-4087643	None:intergenic	35.0%
	GCATTTGATGAAACAAAAGC+TGG	-	chr1_1:4087659-4087678	Msa0002250:intron	35.0%
	GAAACAAAAGCTGGTGTAAA+AGG	-	chr1_1:4087668-4087687	Msa0002250:intron	35.0%
	TCTTAAGTCCTTCATCAACA+AGG	+	chr1_1:4087694-4087713	None:intergenic	35.0%
!!	GTTGATGATGGAATAAGGTA+GGG	+	chr1_1:4087721-4087740	None:intergenic	35.0%
!!	ATCAGGTTGATGATGGAATA+AGG	+	chr1_1:4087726-4087745	None:intergenic	35.0%
!	AATAACATGGCTTGTGTTGT+AGG	+	chr1_1:4087762-4087781	None:intergenic	35.0%
!	AGTTGAAAGATGGTGTTAAG+AGG	-	chr1_1:4087918-4087937	Msa0002250:intron	35.0%
!!	TGTTAAGAGGTTTTATGAGC+AGG	-	chr1_1:4087931-4087950	Msa0002250:intron	35.0%
!	ATGCCTACAATTTAAAGCGT+TGG	+	chr1_1:4088188-4088207	None:intergenic	35.0%
!	GTGAAGCACTAACATATACA+AGG	+	chr1_1:4088332-4088351	None:intergenic	35.0%
	TATAGAATCAAGGTTAGGCT+TGG	+	chr1_1:4087624-4087643	None:intergenic	35.0%
	GCATTTGATGAAACAAAAGC+TGG	-	chr1_1:4087659-4087678	Msa0002250:intron	35.0%
	GAAACAAAAGCTGGTGTAAA+AGG	-	chr1_1:4087668-4087687	Msa0002250:intron	35.0%
	TCTTAAGTCCTTCATCAACA+AGG	+	chr1_1:4087694-4087713	None:intergenic	35.0%
!!	GTTGATGATGGAATAAGGTA+GGG	+	chr1_1:4087721-4087740	None:intergenic	35.0%
!!	ATCAGGTTGATGATGGAATA+AGG	+	chr1_1:4087726-4087745	None:intergenic	35.0%
!	AATAACATGGCTTGTGTTGT+AGG	+	chr1_1:4087762-4087781	None:intergenic	35.0%
!	AGTTGAAAGATGGTGTTAAG+AGG	-	chr1_1:4087918-4087937	Msa0002250:intron	35.0%
!!	TGTTAAGAGGTTTTATGAGC+AGG	-	chr1_1:4087931-4087950	Msa0002250:intron	35.0%
!	ATGCCTACAATTTAAAGCGT+TGG	+	chr1_1:4088188-4088207	None:intergenic	35.0%
!	GTGAAGCACTAACATATACA+AGG	+	chr1_1:4088332-4088351	None:intergenic	35.0%
!!	GTAAAAGGCCTTGTTGATGA+AGG	-	chr1_1:4087683-4087702	Msa0002250:intron	40.0%
!!	GGTTGATGATGGAATAAGGT+AGG	+	chr1_1:4087722-4087741	None:intergenic	40.0%
	GGTCTATGACAGGAATAACA+TGG	+	chr1_1:4087775-4087794	None:intergenic	40.0%
	ATATCTGCAAGGTCTATGAC+AGG	+	chr1_1:4087785-4087804	None:intergenic	40.0%
!	TGAAGGAAGCATGTGAAACA+TGG	-	chr1_1:4087846-4087865	Msa0002250:intron	40.0%
!	GAAGGAAGCATGTGAAACAT+GGG	-	chr1_1:4087847-4087866	Msa0002250:intron	40.0%
!	AAGGAAGCATGTGAAACATG+GGG	-	chr1_1:4087848-4087867	Msa0002250:intron	40.0%
	AATCCCTTTGAGTGTTCTTG+AGG	-	chr1_1:4087895-4087914	Msa0002250:intron	40.0%
	ACTCCTCAAGAACACTCAAA+GGG	+	chr1_1:4087901-4087920	None:intergenic	40.0%
	AACTCCTCAAGAACACTCAA+AGG	+	chr1_1:4087902-4087921	None:intergenic	40.0%
	GTTCTTGAGGAGTTGAAAGA+TGG	-	chr1_1:4087908-4087927	Msa0002250:intron	40.0%
	ATAGCTCACCAGCACTTAAT+TGG	-	chr1_1:4088029-4088048	Msa0002250:intron	40.0%
!	GCACCAACGCTTTAAATTGT+AGG	-	chr1_1:4088182-4088201	Msa0002250:CDS	40.0%
	ATGTCTAGCATGTGTCCTAT+CGG	-	chr1_1:4088213-4088232	Msa0002250:CDS	40.0%
	CTAATATTGTCACGTGGACA+CGG	+	chr1_1:4088294-4088313	None:intergenic	40.0%
	ACGACACTAATATTGTCACG+TGG	+	chr1_1:4088300-4088319	None:intergenic	40.0%
	GACAATATTAGTGTCGTCTC+TGG	-	chr1_1:4088303-4088322	Msa0002250:CDS	40.0%
!!	GTAAAAGGCCTTGTTGATGA+AGG	-	chr1_1:4087683-4087702	Msa0002250:intron	40.0%
!!	GGTTGATGATGGAATAAGGT+AGG	+	chr1_1:4087722-4087741	None:intergenic	40.0%
	GGTCTATGACAGGAATAACA+TGG	+	chr1_1:4087775-4087794	None:intergenic	40.0%
	ATATCTGCAAGGTCTATGAC+AGG	+	chr1_1:4087785-4087804	None:intergenic	40.0%
!	TGAAGGAAGCATGTGAAACA+TGG	-	chr1_1:4087846-4087865	Msa0002250:intron	40.0%
!	GAAGGAAGCATGTGAAACAT+GGG	-	chr1_1:4087847-4087866	Msa0002250:intron	40.0%
!	AAGGAAGCATGTGAAACATG+GGG	-	chr1_1:4087848-4087867	Msa0002250:intron	40.0%
	AATCCCTTTGAGTGTTCTTG+AGG	-	chr1_1:4087895-4087914	Msa0002250:intron	40.0%
	ACTCCTCAAGAACACTCAAA+GGG	+	chr1_1:4087901-4087920	None:intergenic	40.0%
	AACTCCTCAAGAACACTCAA+AGG	+	chr1_1:4087902-4087921	None:intergenic	40.0%
	GTTCTTGAGGAGTTGAAAGA+TGG	-	chr1_1:4087908-4087927	Msa0002250:intron	40.0%
	ATAGCTCACCAGCACTTAAT+TGG	-	chr1_1:4088029-4088048	Msa0002250:intron	40.0%
!	GCACCAACGCTTTAAATTGT+AGG	-	chr1_1:4088182-4088201	Msa0002250:CDS	40.0%
	ATGTCTAGCATGTGTCCTAT+CGG	-	chr1_1:4088213-4088232	Msa0002250:CDS	40.0%
	CTAATATTGTCACGTGGACA+CGG	+	chr1_1:4088294-4088313	None:intergenic	40.0%
	ACGACACTAATATTGTCACG+TGG	+	chr1_1:4088300-4088319	None:intergenic	40.0%
	GACAATATTAGTGTCGTCTC+TGG	-	chr1_1:4088303-4088322	Msa0002250:CDS	40.0%
	CTCACCAGCACTTAATTGGA+GGG	-	chr1_1:4088033-4088052	Msa0002250:intron	45.0%
	GTATCCCTCCAATTAAGTGC+TGG	+	chr1_1:4088040-4088059	None:intergenic	45.0%
!!	TCTTCTGGTTTGGGAGTATC+AGG	+	chr1_1:4088082-4088101	None:intergenic	45.0%
!!	ATGTAACCATGGTGTCGTGT+TGG	+	chr1_1:4088242-4088261	None:intergenic	45.0%
	GAAACAACGGCTCAATTCAC+TGG	-	chr1_1:4088402-4088421	Msa0002250:CDS	45.0%
	CTCACCAGCACTTAATTGGA+GGG	-	chr1_1:4088033-4088052	Msa0002250:intron	45.0%
	GTATCCCTCCAATTAAGTGC+TGG	+	chr1_1:4088040-4088059	None:intergenic	45.0%
!!	TCTTCTGGTTTGGGAGTATC+AGG	+	chr1_1:4088082-4088101	None:intergenic	45.0%
!!	ATGTAACCATGGTGTCGTGT+TGG	+	chr1_1:4088242-4088261	None:intergenic	45.0%
	GAAACAACGGCTCAATTCAC+TGG	-	chr1_1:4088402-4088421	Msa0002250:CDS	45.0%
	GCTCACCAGCACTTAATTGG+AGG	-	chr1_1:4088032-4088051	Msa0002250:intron	50.0%
	GATAGAGTGACCTTGCTACC+AGG	+	chr1_1:4088438-4088457	None:intergenic	50.0%
	GCTCACCAGCACTTAATTGG+AGG	-	chr1_1:4088032-4088051	Msa0002250:intron	50.0%
	GATAGAGTGACCTTGCTACC+AGG	+	chr1_1:4088438-4088457	None:intergenic	50.0%
!	GTGTCGTGTTGGTGTCCGAT+AGG	+	chr1_1:4088231-4088250	None:intergenic	55.0%
	CGGCTCAATTCACTGGATCG+TGG	-	chr1_1:4088409-4088428	Msa0002250:CDS	55.0%
!	GTGTCGTGTTGGTGTCCGAT+AGG	+	chr1_1:4088231-4088250	None:intergenic	55.0%
	CGGCTCAATTCACTGGATCG+TGG	-	chr1_1:4088409-4088428	Msa0002250:CDS	55.0%
	CGGACACCAACACGACACCA+TGG	-	chr1_1:4088233-4088252	Msa0002250:CDS	60.0%
	TTCACTGGATCGTGGCAGCC+TGG	-	chr1_1:4088417-4088436	Msa0002250:CDS	60.0%
	ATCGTGGCAGCCTGGTAGCA+AGG	-	chr1_1:4088425-4088444	Msa0002250:CDS	60.0%
	CGGACACCAACACGACACCA+TGG	-	chr1_1:4088233-4088252	Msa0002250:CDS	60.0%
	TTCACTGGATCGTGGCAGCC+TGG	-	chr1_1:4088417-4088436	Msa0002250:CDS	60.0%
	ATCGTGGCAGCCTGGTAGCA+AGG	-	chr1_1:4088425-4088444	Msa0002250:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	4087602	4088597	4087602	ID=Msa0002250;Name=Msa0002250
chr1_1	mRNA	4087602	4088597	4087602	ID=Msa0002250-mRNA-1;Parent=Msa0002250;Name=Msa0002250-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|184
chr1_1	exon	4088080	4088597	4088080	ID=Msa0002250-mRNA-1:exon:1262;Parent=Msa0002250-mRNA-1
chr1_1	exon	4087602	4087638	4087602	ID=Msa0002250-mRNA-1:exon:1261;Parent=Msa0002250-mRNA-1
chr1_1	CDS	4088080	4088597	4088080	ID=Msa0002250-mRNA-1:cds;Parent=Msa0002250-mRNA-1
chr1_1	CDS	4087602	4087638	4087602	ID=Msa0002250-mRNA-1:cds;Parent=Msa0002250-mRNA-1

Gene Sequence

>Msa0002250

ATGGGAAGTACTGATACAACCAAGCCTAACCTTGATTCTATATTGAATGAACGCAAAGCATTTGATGAAACAAAAGCTGGTGTAAAAGGCCTTGTTGATGAAGGACTTAAGAAGATCCCTACCTTATTCCATCATCAACCTGATAAATATGAGTTAGCCTACAACACAAGCCATGTTATTCCTGTCATAGACCTTGCAGATATTGATAACAAAGATCGTATTCACCAAAAAATTGTTGACAAAGTGAAGGAAGCATGTGAAACATGGGGATTTTTTCAAGTTGTTAATCATGGAATCCCTTTGAGTGTTCTTGAGGAGTTGAAAGATGGTGTTAAGAGGTTTTATGAGCAGGATACAGAAGTAAAAAAAGATTTGTATACTAGAGACAGACATAAATCCTTTATTTATAATAGCAATTTTGATATTTATAGCTCACCAGCACTTAATTGGAGGGATACTTTTATATGTTACTTGGCTCCTGATACTCCCAAACCAGAAGATATTCCTATAGTATGCAGTGATGTTACTTTCTATCCTTATTTTAAGATATATTAA

Protein sequence

>Msa0002250

MGSTDTTKPNLDSILNERKAFDETKAGVKGLVDEGLKKIPTLFHHQPDKYELAYNTSHVIPVIDLADIDNKDRIHQKIVDKVKEACETWGFFQVVNHGIPLSVLEELKDGVKRFYEQDTEVKKDLYTRDRHKSFIYNSNFDIYSSPALNWRDTFICYLAPDTPKPEDIPIVCSDVTFYPYFKIY*