AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0099140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0099140 MtrunA17_Chr1g0151241 84.670 561 20 5 907 1401 20 580 0.0 951
Msa0099140 MtrunA17_Chr1g0151241 70.370 513 104 5 10 475 63 574 0.0 723
Msa0099140 MtrunA17_Chr1g0151301 77.734 512 68 3 10 475 37 548 0.0 818
Msa0099140 MtrunA17_Chr1g0151301 66.853 537 110 7 926 1395 13 548 0.0 721
Msa0099140 MtrunA17_Chr1g0151321 72.361 521 90 5 8 475 32 551 0.0 747
Msa0099140 MtrunA17_Chr1g0151321 63.197 538 125 8 929 1395 16 551 0.0 662
Msa0099140 MtrunA17_Chr1g0151261 84.512 297 16 5 505 776 48 339 4.03e-166 501
Msa0099140 MtrunA17_Chr8g0342491 49.438 534 197 8 929 1392 44 574 1.73e-163 503
Msa0099140 MtrunA17_Chr8g0342491 47.563 513 216 7 10 472 65 574 3.92e-146 457
Msa0099140 MtrunA17_Chr2g0330151 48.689 534 201 9 929 1392 44 574 1.69e-162 500
Msa0099140 MtrunA17_Chr2g0330151 47.276 514 216 10 10 472 65 574 8.96e-148 461
Msa0099140 MtrunA17_Chr1g0178391 46.857 525 211 7 932 1390 43 565 2.01e-158 489
Msa0099140 MtrunA17_Chr1g0178391 44.922 512 231 7 8 470 56 565 2.73e-145 454
Msa0099140 MtrunA17_Chr7g0266641 46.168 535 218 8 926 1392 41 573 5.10e-158 488
Msa0099140 MtrunA17_Chr7g0266641 45.597 511 228 6 10 472 65 573 3.38e-146 457
Msa0099140 MtrunA17_Chr4g0056501 42.614 528 230 10 933 1392 112 634 5.07e-125 403
Msa0099140 MtrunA17_Chr4g0056501 40.472 509 250 10 10 470 129 632 2.26e-112 368
Msa0099140 MtrunA17_Chr1g0151271 89.151 212 23 0 267 478 1 212 5.96e-123 380
Msa0099140 MtrunA17_Chr1g0151271 61.792 212 52 2 1214 1397 1 211 3.39e-75 248
Msa0099140 MtrunA17_Chr3g0079291 39.602 553 258 12 909 1392 78 623 2.41e-120 390
Msa0099140 MtrunA17_Chr3g0079291 40.000 510 250 9 9 470 120 621 7.40e-111 363
Msa0099140 MtrunA17_Chr5g0427521 50.423 355 130 8 947 1255 11 365 2.30e-109 351
Msa0099140 MtrunA17_Chr5g0427521 44.475 362 145 8 3 308 4 365 2.06e-96 315
Msa0099140 MtrunA17_Chr1g0151281 81.538 195 19 2 22 199 76 270 2.50e-106 338
Msa0099140 MtrunA17_Chr1g0151281 66.154 195 39 3 959 1126 76 270 4.78e-79 261
Msa0099140 MtrunA17_Chr1g0153141 48.498 233 98 7 506 726 51 273 1.24e-51 185
Msa0099140 MtrunA17_Chr3g0122091 43.083 253 117 6 504 729 82 334 5.74e-49 180
Msa0099140 MtrunA17_Chr5g0427511 50.000 168 82 2 305 470 20 187 1.37e-44 160
Msa0099140 MtrunA17_Chr5g0427511 45.882 170 61 4 1253 1392 21 189 1.79e-36 137
Msa0099140 MtrunA17_Chr1g0151251 56.000 75 23 2 1133 1198 33 106 9.60e-22 91.7
Msa0099140 MtrunA17_Chr1g0151251 96.296 27 1 0 806 832 80 106 6.55e-12 63.5
Msa0099140 MtrunA17_Chr1g0151251 55.319 47 20 1 205 251 61 106 2.79e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0099140 AT3G13790.2 52.247 534 182 10 930 1392 49 580 1.20e-173 530
Msa0099140 AT3G13790.2 50.000 520 202 10 8 472 64 580 4.61e-158 489
Msa0099140 AT3G13790.1 51.955 537 182 11 930 1392 49 583 2.21e-171 524
Msa0099140 AT3G13790.1 50.193 518 200 10 10 472 69 583 1.02e-157 488
Msa0099140 AT1G55120.1 50.093 539 192 10 930 1392 36 573 2.98e-170 522
Msa0099140 AT1G55120.1 48.479 526 214 8 10 479 56 580 1.23e-154 481
Msa0099140 AT5G11920.1 50.847 531 187 11 933 1392 17 544 8.59e-163 500
Msa0099140 AT5G11920.1 50.000 512 206 8 10 472 34 544 1.14e-155 481
Msa0099140 AT1G55120.4 49.615 520 188 9 946 1392 15 533 2.03e-161 497
Msa0099140 AT1G55120.4 48.479 526 214 8 10 479 16 540 3.10e-155 481
Msa0099140 AT1G55120.2 49.518 519 188 9 947 1392 17 534 2.21e-160 494
Msa0099140 AT1G55120.2 47.753 534 222 8 2 479 9 541 3.69e-156 483
Msa0099140 AT1G55120.3 49.143 525 193 9 941 1392 35 558 2.60e-160 495
Msa0099140 AT1G55120.3 48.302 530 217 8 6 479 37 565 8.81e-156 483
Msa0099140 AT3G13790.5 51.456 515 177 10 949 1392 1 513 3.08e-160 492
Msa0099140 AT3G13790.5 50.000 516 200 10 12 472 1 513 1.03e-156 483
Msa0099140 AT3G13790.4 51.456 515 177 10 949 1392 1 513 3.08e-160 492
Msa0099140 AT3G13790.4 50.000 516 200 10 12 472 1 513 1.03e-156 483
Msa0099140 AT3G13790.3 51.456 515 177 10 949 1392 1 513 3.08e-160 492
Msa0099140 AT3G13790.3 50.000 516 200 10 12 472 1 513 1.03e-156 483
Msa0099140 AT3G13784.1 48.689 534 200 11 928 1390 38 568 7.18e-160 493
Msa0099140 AT3G13784.1 47.776 517 213 9 8 470 55 568 8.21e-151 469
Msa0099140 AT3G13784.2 48.417 537 200 12 928 1390 38 571 1.20e-157 488
Msa0099140 AT3G13784.2 47.961 515 211 9 10 470 60 571 1.45e-150 469
Msa0099140 AT3G13784.4 48.417 537 200 12 928 1390 38 571 1.51e-157 487
Msa0099140 AT3G13784.4 48.062 516 211 9 9 470 59 571 3.39e-151 471
Msa0099140 AT5G11920.3 50.000 510 205 8 12 472 1 509 5.78e-155 478
Msa0099140 AT5G11920.3 50.586 512 182 10 949 1392 1 509 3.13e-154 476
Msa0099140 AT3G13784.3 47.961 515 211 9 10 470 7 518 1.96e-151 469
Msa0099140 AT3G13784.3 47.674 516 196 11 946 1390 6 518 3.38e-147 458
Msa0099140 AT3G52600.1 45.421 535 213 9 932 1388 47 580 5.74e-147 460
Msa0099140 AT3G52600.1 44.316 519 228 10 10 469 65 581 3.15e-131 418
Msa0099140 AT3G52600.3 45.367 518 207 8 946 1388 10 526 7.74e-141 442
Msa0099140 AT3G52600.3 44.316 519 228 10 10 469 11 527 6.27e-132 418
Msa0099140 AT2G36190.1 43.527 533 223 8 932 1387 49 580 1.99e-138 437
Msa0099140 AT2G36190.1 43.243 518 234 8 10 469 67 582 3.43e-129 412
Msa0099140 AT3G52600.2 45.049 515 207 8 949 1388 1 514 2.13e-138 435
Msa0099140 AT3G52600.2 44.294 517 227 10 12 469 1 515 5.60e-131 415
Msa0099140 AT5G11920.2 52.685 391 140 9 933 1280 17 405 3.20e-123 390
Msa0099140 AT5G11920.2 50.000 372 137 7 10 332 34 405 1.92e-109 353
Msa0099140 AT1G12240.1 40.075 534 242 12 933 1392 121 650 1.47e-118 386
Msa0099140 AT1G12240.1 37.833 526 260 14 10 477 138 654 3.32e-105 350
Msa0099140 AT1G62660.1 38.837 533 249 12 933 1392 106 634 1.97e-111 366
Msa0099140 AT1G62660.1 36.692 526 265 14 10 477 123 638 4.59e-97 327
Msa0099140 AT5G52010.1 66.406 256 61 3 511 741 72 327 1.69e-109 352
Msa0099140 AT1G62660.2 38.491 517 244 11 946 1392 24 536 6.19e-106 348
Msa0099140 AT1G62660.2 36.692 526 265 14 10 477 25 540 3.85e-98 326
Msa0099140 AT1G62660.4 36.344 465 223 10 998 1392 7 468 3.58e-85 287
Msa0099140 AT1G62660.4 34.375 480 249 13 56 477 1 472 4.58e-78 267
Msa0099140 AT1G62660.3 36.344 465 223 10 998 1392 7 468 3.58e-85 287
Msa0099140 AT1G62660.3 34.375 480 249 13 56 477 1 472 4.58e-78 267
Msa0099140 AT4G12240.1 46.667 240 105 5 514 730 39 278 7.48e-54 193

Find 336 sgRNAs with CRISPR-Local

Find 842 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTAATGATTAGTATTTATT+TGG 0.156088 1_3:+5190359 None:intergenic
TATTTGAAGCTCTAAATATT+TGG 0.163365 1_3:-5203180 None:intergenic
TTGGACTTATTTATCAAATT+TGG 0.169596 1_3:-5204024 None:intergenic
TGTCCTATGATCTCATTAAT+TGG 0.208626 1_3:+5201526 Msa0099140:CDS
GGGGATGTTGATAGGGCTTT+AGG 0.212583 1_3:+5195640 Msa0099140:CDS
AAGGCTAGAGAGGCTAATTT+AGG 0.234340 1_3:+5195604 Msa0099140:CDS
TGGATACGAGGTTGGGGTTT+TGG 0.235659 1_3:-5194893 None:intergenic
ATCTATCTGATCCTTACTTA+TGG 0.236808 1_3:+5190667 Msa0099140:CDS
GTGTATATCAATAGCAATAA+TGG 0.243828 1_3:+5190942 Msa0099140:CDS
AAGTAGAGTGTATCCTTTAT+TGG 0.244964 1_3:+5203763 Msa0099140:CDS
TATCAAATGATCTCATAAAT+TGG 0.248172 1_3:+5190487 Msa0099140:CDS
GGATCAACTCTTGAAGTAAA+AGG 0.259612 1_3:+5191798 Msa0099140:CDS
AAAGCGTCGGTTAGATTCTT+TGG 0.262309 1_3:-5201699 None:intergenic
GAATGGTGAGGTTACGGATA+TGG 0.264144 1_3:+5195702 Msa0099140:intron
AAATAGAGTGTATCCCTTAT+TGG 0.264626 1_3:+5192969 Msa0099140:CDS
GCATCAAGAAGTGGCAAAAT+AGG 0.267466 1_3:+5203097 Msa0099140:CDS
GGGATGTTGATAGGGCTTTA+GGG 0.271261 1_3:+5195641 Msa0099140:CDS
CCAAGGTAGTGTATCTAATT+TGG 0.271769 1_3:+5204068 Msa0099140:three_prime_UTR
ACGACAACAATGGATGATTT+TGG 0.273875 1_3:+5195775 Msa0099140:CDS
AAGAGGATGGGCTGGTTTAC+AGG 0.274050 1_3:+5191238 Msa0099140:CDS
TAAGGATCAGATAGATTCTT+TGG 0.280907 1_3:-5190660 None:intergenic
TATCAAAACGCTTATCAGTA+TGG 0.284321 1_3:+5204154 Msa0099140:three_prime_UTR
GTGTATATCAATAGTACTAA+TGG 0.286181 1_3:+5201981 Msa0099140:CDS
CGGTCCATTATTGAGAGTTT+TGG 0.286313 1_3:+5192922 Msa0099140:CDS
ATCTTTCTCTATAGCCAATA+AGG 0.287536 1_3:-5192983 None:intergenic
GAAAGGATGGGCAGGTTTAC+AGG 0.290146 1_3:+5202271 Msa0099140:CDS
TGACCAAATGTTGCTGCATC+AGG 0.306793 1_3:-5190438 None:intergenic
AGACAATTCCAAGGATGTTT+TGG 0.311516 1_3:+5191676 Msa0099140:intron
TAAGAAAGATATGGAGATTA+AGG 0.312766 1_3:+5203911 Msa0099140:exon
TTGTTGTTGGGGATGTTGAT+AGG 0.320262 1_3:+5195632 Msa0099140:CDS
GAAGAAGAGGCAGAAGTATA+AGG 0.320482 1_3:+5195342 Msa0099140:CDS
AAGTCCATTATTGAGAGTTT+TGG 0.321216 1_3:+5203716 Msa0099140:CDS
ATGACTTTGAAGCATAAAAT+AGG 0.323325 1_3:-5191139 None:intergenic
ATCTCCAAAACTCTCAATAA+TGG 0.325601 1_3:-5192926 None:intergenic
ATCTCCAAAACTCTCAATAA+TGG 0.325601 1_3:-5203720 None:intergenic
ATTTAGGGACTGTTGTTGTT+GGG 0.325884 1_3:+5195620 Msa0099140:CDS
GCCAAACCATACCCAACTTT+TGG 0.332829 1_3:-5195421 None:intergenic
AGAAGTATAATGATGCTGTT+AGG 0.333113 1_3:+5195386 Msa0099140:CDS
AGACAATTCCAAGGCAAGTT+TGG 0.339596 1_3:+5202731 Msa0099140:intron
TGTATATCAATAGCAATAAT+GGG 0.342838 1_3:+5190943 Msa0099140:CDS
ATCTAACCGACGCTTTCTTA+AGG 0.343018 1_3:+5201706 Msa0099140:CDS
TTAGGTATCCTGTACTTGAT+AGG 0.345975 1_3:-5200247 None:intergenic
GGCAAGGAAATGATGGAAAA+TGG 0.346822 1_3:+5190775 Msa0099140:CDS
TGGATTTGGTTCCAAGGAAT+AGG 0.348659 1_3:+5195722 Msa0099140:CDS
TGGTAAATATGTTTCTGATA+AGG 0.350299 1_3:+5202088 Msa0099140:CDS
TTGCTGCATCAGGGTTATAT+TGG 0.350746 1_3:-5190428 None:intergenic
CTTTCATTCATCTTCCTCAA+TGG 0.352874 1_3:+5195125 Msa0099140:CDS
GCATCAAGAAAAGGAATGAT+AGG 0.356295 1_3:+5192158 Msa0099140:CDS
GTCAAATCTTAAGTCTTTGC+TGG 0.356543 1_3:-5191111 None:intergenic
GAGAGATAAGGCGGCGTTGT+AGG 0.359823 1_3:-5195041 None:intergenic
AATTTAGGGACTGTTGTTGT+TGG 0.361704 1_3:+5195619 Msa0099140:CDS
GGCATGGAAAAGATGGAAAA+TGG 0.361827 1_3:+5201814 Msa0099140:CDS
GCCATTTGGTTTGAAAGCTT+TGG 0.362065 1_3:+5192181 Msa0099140:CDS
AGCATGAAACAAGCAGAGTT+TGG 0.363723 1_3:+5193069 Msa0099140:CDS
TGTATATCAATAGTACTAAT+GGG 0.367638 1_3:+5201982 Msa0099140:CDS
CTTCTTCTATCCCTATTCCT+TGG 0.367662 1_3:-5195733 None:intergenic
AAAGATTTAAGGTTTGACTA+TGG 0.368584 1_3:+5202149 Msa0099140:intron
AGACGATTCCAGGGCATGTT+TGG 0.369305 1_3:+5197575 Msa0099140:intron
AAACTAGATGACATCCAAAA+AGG 0.371756 1_3:+5197411 Msa0099140:CDS
TCTTTCAATGCCATCTTGTT+CGG 0.372077 1_3:-5191219 None:intergenic
GTAATCATTGGTGCTCAAAA+TGG 0.372417 1_3:+5190801 Msa0099140:CDS
GACAAACAGATCAATATTAC+AGG 0.372976 1_3:+5202814 Msa0099140:CDS
TTTCTGTTAAACAGTAGAAA+TGG 0.374569 1_3:+5200190 Msa0099140:intron
AGTGGCAAAATAGGACCATT+TGG 0.377596 1_3:+5203106 Msa0099140:CDS
TGAGGTTACGGATATGGATT+TGG 0.380915 1_3:+5195708 Msa0099140:intron
CCTCAACATCTCACTAAAAT+CGG 0.381248 1_3:-5195581 None:intergenic
ACCAAAAGTTGGGTATGGTT+TGG 0.382753 1_3:+5195420 Msa0099140:CDS
CATTTGGTGATATAATTGTA+TGG 0.383801 1_3:+5201493 Msa0099140:CDS
ATCCTCACTTTGATAAAGAA+TGG 0.385139 1_3:-5201877 None:intergenic
TGAGGGAGAGGAAGGAGTGG+GGG 0.390477 1_3:-5194868 None:intergenic
TCTAACCGACGCTTTCTTAA+GGG 0.392576 1_3:+5201707 Msa0099140:CDS
TTGAGGGAGAGGAAGGAGTG+GGG 0.392883 1_3:-5194869 None:intergenic
TCTGTTGCATAGAATGGATT+AGG 0.392944 1_3:-5190882 None:intergenic
GACATCAACAGTTGTTGGTC+AGG 0.396812 1_3:+5201588 Msa0099140:CDS
CTATGAGTAGAGGGATTGAT+TGG 0.397433 1_3:+5195536 Msa0099140:CDS
AACCCTGATGCAGCAACATT+TGG 0.398188 1_3:+5190435 Msa0099140:CDS
CACCAGGACTACTACTTTGT+TGG 0.398823 1_3:+5197279 Msa0099140:intron
GGATTTGGTTCCAAGGAATA+GGG 0.400811 1_3:+5195723 Msa0099140:CDS
AATCCACTTGCAGCAACATT+TGG 0.404498 1_3:+5201477 Msa0099140:CDS
TATGGTTCGAAGTCATAAAC+TGG 0.405225 1_3:+5197352 Msa0099140:CDS
ACAGCATTGGATACGAGGTT+GGG 0.406801 1_3:-5194900 None:intergenic
AGGGAGGCATGCTGATTTGT+GGG 0.407902 1_3:+5195660 Msa0099140:CDS
AAAGACTTAAGATTTGACTA+TGG 0.408964 1_3:+5191116 Msa0099140:CDS
TTTCATTCATCTTCCTCAAT+GGG 0.409031 1_3:+5195126 Msa0099140:CDS
AAAACAAAGTCTGTGTCCTC+TGG 0.411202 1_3:+5194987 Msa0099140:intron
GTGGATTATGTTGGTAGAAA+AGG 0.411627 1_3:-5201461 None:intergenic
TAATGGGGTTGATACAACTA+TGG 0.418613 1_3:+5190959 Msa0099140:CDS
TCTATCTGATCCTTACTTAT+GGG 0.419249 1_3:+5190668 Msa0099140:CDS
CTTCAAGAGTTGATCCACTT+TGG 0.419393 1_3:-5191791 None:intergenic
CATCATACATACTTATTGTT+GGG 0.420613 1_3:-5197987 None:intergenic
GAGGGAGAGGAAGGAGTGGG+GGG 0.421552 1_3:-5194867 None:intergenic
GTAATTGTCGGTGCTCAAAA+TGG 0.421595 1_3:+5201840 Msa0099140:CDS
AAAGGAATGATAGGGCCATT+TGG 0.422034 1_3:+5192167 Msa0099140:CDS
AGTTTGTCTACCTCTTCAAT+TGG 0.423574 1_3:-5197629 None:intergenic
GAACCGTTTGAATTCTTTGA+AGG 0.425604 1_3:+5195318 Msa0099140:CDS
TCTTTCTCTATAGCCAATAA+AGG 0.427496 1_3:-5203776 None:intergenic
CACTGTTGAATGCATAAAGA+TGG 0.428014 1_3:-5198223 None:intergenic
AATCCAATTAATGAGATCAT+AGG 0.428261 1_3:-5201529 None:intergenic
AGGCTAGAGAGGCTAATTTA+GGG 0.429097 1_3:+5195605 Msa0099140:CDS
AACGATTTCACTTAGAAGCT+TGG 0.433252 1_3:+5203604 Msa0099140:intron
ACAGGACCAATGTACTATAA+AGG 0.433459 1_3:+5190387 Msa0099140:CDS
TAAGCCTCAAGCTGCTGATT+GGG 0.436038 1_3:+5195489 Msa0099140:CDS
TTATCAAGCCAAACTTGCCT+TGG 0.436792 1_3:-5202739 None:intergenic
GTTTGAGGGAGAGGAAGGAG+TGG 0.437067 1_3:-5194871 None:intergenic
ACATCATACATACTTATTGT+TGG 0.437873 1_3:-5197988 None:intergenic
GCTTCGGAGTTGAGGAGAGC+AGG 0.438402 1_3:+5195442 Msa0099140:CDS
CTAAGAATAGGAGAATATTA+TGG 0.439535 1_3:+5191174 Msa0099140:CDS
CGACGCTTTCTTAAGGGAAT+GGG 0.440309 1_3:+5201713 Msa0099140:CDS
ACCTCAGCACTTTCTAGATC+AGG 0.441403 1_3:-5192086 None:intergenic
TTATTTCACAACTGAATGCT+TGG 0.442142 1_3:+5193046 Msa0099140:CDS
ATAAGCCTCAAGCTGCTGAT+TGG 0.442172 1_3:+5195488 Msa0099140:CDS
GACTTATTTATCAAATTTGG+TGG 0.443442 1_3:-5204021 None:intergenic
TAGGGAGGCATGCTGATTTG+TGG 0.446184 1_3:+5195659 Msa0099140:CDS
TAGGAGAATATTGTGGGGTT+GGG 0.446531 1_3:+5202214 Msa0099140:CDS
AGTATTTATTTGGCTGTGAC+AGG 0.447580 1_3:+5190369 Msa0099140:CDS
GACATAAACAGTTGTTGGTC+AGG 0.447820 1_3:+5190549 Msa0099140:CDS
GTATCATCTGTTGCATAGAA+TGG 0.447854 1_3:-5190888 None:intergenic
ATATTGTAGTCTTCTCTGAT+TGG 0.448373 1_3:-5192214 None:intergenic
CTGTGGATAATTCAAGTGTT+AGG 0.450034 1_3:+5202015 Msa0099140:CDS
AACAATTTCACTCAGAAGCT+TGG 0.450306 1_3:+5192805 Msa0099140:CDS
TCCCCTTCAAAGAATTCAAA+CGG 0.451680 1_3:-5195321 None:intergenic
GATGTCGATTATGTTGTTGT+TGG 0.451846 1_3:-5194924 None:intergenic
ACAGAACATACGTAAGGTTC+AGG 0.453549 1_3:-5195214 None:intergenic
TTCTATGCAACAGATGATAC+TGG 0.456559 1_3:+5190891 Msa0099140:CDS
AAAAGGATGGGCTGATGTAC+AGG 0.457396 1_3:+5197428 Msa0099140:CDS
ATAGGAGAATATTGTGGGGT+TGG 0.458358 1_3:+5202213 Msa0099140:CDS
ATGTTAGAAATAACCTGCTT+TGG 0.458700 1_3:-5203228 None:intergenic
CCGACGCTTTCTTAAGGGAA+TGG 0.459205 1_3:+5201712 Msa0099140:CDS
TTTCCTTGCCATGCAGTTGA+AGG 0.459536 1_3:-5190762 None:intergenic
TTTCCATGCCATGCAGTTGA+AGG 0.459536 1_3:-5201801 None:intergenic
TGATCTCAAAACTGAATACT+TGG 0.460342 1_3:+5198263 Msa0099140:CDS
GATTGTGCTTAAGAAAGATA+TGG 0.461369 1_3:+5203902 Msa0099140:exon
TTTGTTAGCTTTAGCTTCAA+AGG 0.461959 1_3:+5203129 Msa0099140:CDS
AAAAGGGATCACTGCATCTC+AGG 0.462664 1_3:+5191815 Msa0099140:CDS
GATCAACTCTTGAAGTAAAA+GGG 0.462814 1_3:+5191799 Msa0099140:CDS
GGTGACGTCGCCGAAGCGTT+CGG 0.464549 1_3:-5195074 None:intergenic
CTGATCCTTACTTATGGGAA+TGG 0.464717 1_3:+5190673 Msa0099140:CDS
CACTCACCACTTTCTAGCTT+AGG 0.467120 1_3:-5203022 None:intergenic
TTACAGGTCTTCATTGAGGC+AGG 0.469865 1_3:+5192730 Msa0099140:intron
TTTGAGGGAGAGGAAGGAGT+GGG 0.471205 1_3:-5194870 None:intergenic
TCATCAAGCCAAAACATCCT+TGG 0.471780 1_3:-5191684 None:intergenic
TTGAAACCAAAAGTTGGGTA+TGG 0.472123 1_3:+5195415 Msa0099140:CDS
ACTGCATGGCATGGAAAAGA+TGG 0.475008 1_3:+5201807 Msa0099140:CDS
AGCATGAAGCATGCAGAGAT+AGG 0.476022 1_3:+5203863 Msa0099140:CDS
CTAGTGACATAAACAGTTGT+TGG 0.476420 1_3:+5190544 Msa0099140:CDS
AGTTGGGTATGGTTTGGCTT+CGG 0.477851 1_3:+5195426 Msa0099140:CDS
GGCTCAACTCTTGAAATCTC+AGG 0.479290 1_3:+5202853 Msa0099140:CDS
CAACAACTGTTGATGTCATA+AGG 0.480132 1_3:-5201582 None:intergenic
ATACACCTTTGTAGTACATA+GGG 0.480710 1_3:-5201434 None:intergenic
CAAGTTTGGCTTGATAAAAG+TGG 0.481311 1_3:+5202745 Msa0099140:CDS
GGGTGTAGAAGTGGAGAGTG+TGG 0.482014 1_3:-5194847 None:intergenic
TGATCCTTACTTATGGGAAT+GGG 0.482048 1_3:+5190674 Msa0099140:CDS
GGCATTGAAAGAGGATGGGC+TGG 0.483690 1_3:+5191230 Msa0099140:CDS
TAAGAATAGGAGAATATTGT+GGG 0.486642 1_3:+5202208 Msa0099140:CDS
TTATCTCAAAACTGAATGCT+TGG 0.486774 1_3:+5203840 Msa0099140:CDS
GCCAAAGCTTTCAAACCAAA+TGG 0.487937 1_3:-5192182 None:intergenic
TATGCAACTATCTTTGACAT+AGG 0.490826 1_3:+5192770 Msa0099140:CDS
TTCCTTGCCATGCAGTTGAA+GGG 0.493420 1_3:-5190761 None:intergenic
TTCCATGCCATGCAGTTGAA+GGG 0.493420 1_3:-5201800 None:intergenic
TCTTTCTCTATAGCCAATAA+GGG 0.495242 1_3:-5192982 None:intergenic
AACAGCATTGGATACGAGGT+TGG 0.496049 1_3:-5194901 None:intergenic
GATATAGAGAAAGGATGGGC+AGG 0.496476 1_3:+5202263 Msa0099140:CDS
GATAAATTCAATAACAAAGA+AGG 0.497823 1_3:-5203973 None:intergenic
ACTGCATGGCAAGGAAATGA+TGG 0.498338 1_3:+5190768 Msa0099140:CDS
TGTTGTTGGGGATGTTGATA+GGG 0.498608 1_3:+5195633 Msa0099140:CDS
ATTAGATACACTACCTTGGA+AGG 0.499481 1_3:-5204064 None:intergenic
GAAGTATAATGATGCTGTTA+GGG 0.500181 1_3:+5195387 Msa0099140:CDS
AGCGTGGCGGTTGGCGTAAG+CGG 0.500548 1_3:-5195104 None:intergenic
TCTTGAGGATCAACTTCGCT+TGG 0.501173 1_3:-5192116 None:intergenic
AAGATGATATAGAGAAAGGA+TGG 0.502302 1_3:+5202258 Msa0099140:CDS
CATTCAACAGTGGAAGAAGC+AGG 0.502678 1_3:+5198234 Msa0099140:CDS
GGCGAGGGATTTGAGAGATA+AGG 0.503534 1_3:-5195053 None:intergenic
GTAGAAGTGGAGAGTGTGGA+GGG 0.504165 1_3:-5194843 None:intergenic
GAACAATATGCATCAAGAAA+AGG 0.506692 1_3:+5192149 Msa0099140:CDS
AGAGATAAGGCGGCGTTGTA+GGG 0.506909 1_3:-5195040 None:intergenic
GGGAAATTGACACATTGGAT+TGG 0.507863 1_3:-5204043 None:intergenic
TCTGATGAAGAAGATGAAGA+TGG 0.507897 1_3:+5195883 Msa0099140:CDS
CATAAACTGGAGAATATTGT+GGG 0.507921 1_3:+5197365 Msa0099140:CDS
CTGATGAAGAAGATGAAGAT+GGG 0.509060 1_3:+5195884 Msa0099140:CDS
GCTAAAGCTAACAAACCAAA+TGG 0.510298 1_3:-5203121 None:intergenic
ATGTAGAGTTTATCGTTCAC+TGG 0.510400 1_3:+5198184 Msa0099140:intron
AAATCCCTCGCCGAACGCTT+CGG 0.510847 1_3:+5195064 Msa0099140:CDS
TGATGATACCTTTACGTTCG+AGG 0.511617 1_3:-5195186 None:intergenic
TCACCAAATGTTGCTGCAAG+TGG 0.513455 1_3:-5201480 None:intergenic
GTTGTGAAATAACCACACTT+TGG 0.513538 1_3:-5193035 None:intergenic
GTTCCTGTAAACTCTACATC+AGG 0.516578 1_3:-5202122 None:intergenic
CTCACTAAAATCGGAATCAT+CGG 0.517860 1_3:-5195572 None:intergenic
AAGATGGCATTGAAAGAGGA+TGG 0.518422 1_3:+5191225 Msa0099140:CDS
TGTAGAAGTGGAGAGTGTGG+AGG 0.519402 1_3:-5194844 None:intergenic
CTAAGAATAGGAGAATATTG+TGG 0.519989 1_3:+5202207 Msa0099140:CDS
CTCGACTTCCTCGAACGTAA+AGG 0.522822 1_3:+5195178 Msa0099140:CDS
CGCGTGGTGGTTTGTTGTCG+AGG 0.523493 1_3:-5195012 None:intergenic
TTTAGGGACTGTTGTTGTTG+GGG 0.523557 1_3:+5195621 Msa0099140:CDS
TGTTGTTGTTGGAACAGCAT+TGG 0.523984 1_3:-5194913 None:intergenic
ATTTGGTGATATAATTGTAT+GGG 0.524715 1_3:+5201494 Msa0099140:CDS
TTTATGTCACTAGGCACACT+TGG 0.527729 1_3:-5190534 None:intergenic
AGTTGAGGATCAACTTCACT+TGG 0.527811 1_3:-5203055 None:intergenic
TCATAAACTGGAGAATATTG+TGG 0.529589 1_3:+5197364 Msa0099140:CDS
CGGATATGGATTTGGTTCCA+AGG 0.531339 1_3:+5195716 Msa0099140:CDS
ATGTGTCAATTTCCCTTCCA+AGG 0.531903 1_3:+5204051 Msa0099140:three_prime_UTR
GTCGCCGAAGCGTTCGGCGA+GGG 0.533107 1_3:-5195068 None:intergenic
CATCAAGAAAAGGAATGATA+GGG 0.536854 1_3:+5192159 Msa0099140:CDS
CAGCATTGGATACGAGGTTG+GGG 0.537610 1_3:-5194899 None:intergenic
TGATGATAAGTGACCAGACC+AGG 0.542395 1_3:+5192276 Msa0099140:CDS
CACAATCTGTATTTCCCTCA+TGG 0.542893 1_3:-5203886 None:intergenic
CTCAGGCATCAATGCATCAC+AGG 0.543055 1_3:+5202870 Msa0099140:CDS
TGTTCTTTACAGAGTTCTTG+AGG 0.543126 1_3:-5192131 None:intergenic
TGGAAGGGAAATTGACACAT+TGG 0.544344 1_3:-5204048 None:intergenic
AACCGTTTGAATTCTTTGAA+GGG 0.544942 1_3:+5195319 Msa0099140:CDS
CCAAATTAGATACACTACCT+TGG 0.547006 1_3:-5204068 None:intergenic
GACAAGCAAATCAGTATCGC+AGG 0.548721 1_3:+5191759 Msa0099140:CDS
GACCCTTCAACTGCATGGCA+TGG 0.549589 1_3:+5201798 Msa0099140:CDS
ATAGGAGAATATTATGGCGA+TGG 0.552402 1_3:+5191180 Msa0099140:CDS
CTTCGGAGTTGAGGAGAGCA+GGG 0.552606 1_3:+5195443 Msa0099140:CDS
CAAAACTCTCAATAATGGAC+CGG 0.557556 1_3:-5192921 None:intergenic
AAACAAAGTCTGTGTCCTCT+GGG 0.558785 1_3:+5194988 Msa0099140:intron
ACTGGAGAATATTGTGGGCA+TGG 0.560867 1_3:+5197370 Msa0099140:CDS
ATTACAGGAGAGAAACTTGA+GGG 0.561402 1_3:+5202829 Msa0099140:CDS
CTTATGACATCAACAGTTGT+TGG 0.561670 1_3:+5201583 Msa0099140:CDS
CCACTAGGTGGAGTCATCAA+AGG 0.562008 1_3:-5190714 None:intergenic
ATCAAAACGCTTATCAGTAT+GGG 0.562109 1_3:+5204155 Msa0099140:three_prime_UTR
CCACTAGGTGGAGTCATCAC+AGG 0.562322 1_3:-5201753 None:intergenic
ATCAGATAGATTCTTTGGCA+TGG 0.562603 1_3:-5190655 None:intergenic
ACTGTTGAATGCATAAAGAT+GGG 0.562708 1_3:-5198222 None:intergenic
GTTAATATATGCAGATTGAC+CGG 0.562840 1_3:+5192902 Msa0099140:intron
AAACAGTAGAAATGGAATTG+AGG 0.565381 1_3:+5200198 Msa0099140:intron
CACTTTACAGGTCTTCATTG+AGG 0.565481 1_3:+5192726 Msa0099140:intron
ACGCAAGATGATATAGAGAA+AGG 0.566752 1_3:+5202254 Msa0099140:CDS
CATCTTTATGTATTCAACAA+TGG 0.568155 1_3:+5193009 Msa0099140:CDS
CATCTTTATGTATTCAACAA+TGG 0.568155 1_3:+5203803 Msa0099140:CDS
TATACACCTTTGTAGTACAT+AGG 0.570250 1_3:-5201435 None:intergenic
GAACAAGATGGCATTGAAAG+AGG 0.570426 1_3:+5191221 Msa0099140:CDS
GGTGCTCAAAATGGTGATGA+AGG 0.571473 1_3:+5201849 Msa0099140:CDS
ATGAATGAAAGCGTGGCGGT+TGG 0.572273 1_3:-5195113 None:intergenic
GATTATGTTGGTAGAAAAGG+TGG 0.572926 1_3:-5201458 None:intergenic
TCCACCTAGTGGAGTTGAAG+AGG 0.573176 1_3:+5201764 Msa0099140:CDS
TAGGAGAATATTATGGCGAT+GGG 0.573621 1_3:+5191181 Msa0099140:CDS
GGCTCAACCACTATACTCCC+TGG 0.573634 1_3:+5190570 Msa0099140:CDS
AAAGCCCAATCAGCAGCTTG+AGG 0.574075 1_3:-5195493 None:intergenic
AAGTTTGGCTTGATAAAAGT+GGG 0.574645 1_3:+5202746 Msa0099140:CDS
TGATGTGCAGTGACCAAAGC+AGG 0.576197 1_3:+5203215 Msa0099140:CDS
CTTACAGTGGCCAATTGAAG+AGG 0.576555 1_3:+5197619 Msa0099140:CDS
GGAAAATGGAGGGTAATTGT+CGG 0.577503 1_3:+5201828 Msa0099140:CDS
AAACAATATGCATCAAGAAG+TGG 0.579094 1_3:+5203088 Msa0099140:CDS
CTTTACGTTCGAGGAAGTCG+AGG 0.579347 1_3:-5195177 None:intergenic
GACCCTTCAACTGCATGGCA+AGG 0.579815 1_3:+5190759 Msa0099140:CDS
CGTTGGTTGAGAACCCATTG+AGG 0.579899 1_3:-5195139 None:intergenic
TGTTTGCTACATAATAGTTG+AGG 0.580062 1_3:-5203070 None:intergenic
TAAACACCTTTATAGTACAT+TGG 0.580560 1_3:-5190393 None:intergenic
TGATGCATTCTATGAGTAGA+GGG 0.580660 1_3:+5195527 Msa0099140:CDS
GATGTTGAGGAAGGCTAGAG+AGG 0.580682 1_3:+5195594 Msa0099140:CDS
GAGCTACCTAAGCTAGAAAG+TGG 0.582940 1_3:+5203016 Msa0099140:CDS
GGTGCTCAAAATGGTGATGA+AGG 0.583038 1_3:+5190810 Msa0099140:CDS
ATGGTTTGGCTTCGGAGTTG+AGG 0.585237 1_3:+5195434 Msa0099140:CDS
GTATTGATCCTATCAAGTAC+AGG 0.587930 1_3:+5200239 Msa0099140:CDS
CGAAAATGTAGACAATTCCA+AGG 0.587982 1_3:+5191667 Msa0099140:intron
GTGGGGAGAGATTGATGCAG+TGG 0.590803 1_3:+5191709 Msa0099140:CDS
CAACAACTGTTTATGTCACT+AGG 0.591684 1_3:-5190543 None:intergenic
ACCGTTTGAATTCTTTGAAG+GGG 0.594952 1_3:+5195320 Msa0099140:CDS
AACATTGCTCTTGAACCAAG+TGG 0.595021 1_3:+5201558 Msa0099140:CDS
ATGATGCATTCTATGAGTAG+AGG 0.597154 1_3:+5195526 Msa0099140:CDS
TTATCCTCTTCAACTCCACT+AGG 0.598590 1_3:-5201768 None:intergenic
GCATGTTTGGCGATAAAAGA+GGG 0.599330 1_3:+5197588 Msa0099140:CDS
GACCAAATGTTGCTGCATCA+GGG 0.599733 1_3:-5190437 None:intergenic
TTGGAACAGCATTGGATACG+AGG 0.599990 1_3:-5194905 None:intergenic
TTAGAGACCCTTCAACTGCA+TGG 0.602044 1_3:+5201793 Msa0099140:CDS
GGTTCAGCCACTATACTCCC+AGG 0.605138 1_3:+5201609 Msa0099140:CDS
TCACCGACTTCAACTCCACT+AGG 0.605450 1_3:-5190729 None:intergenic
ATTCTTTGAAGGGGAAGAAG+AGG 0.607168 1_3:+5195329 Msa0099140:CDS
CATGCAGAGATAGGCCATGA+GGG 0.607754 1_3:+5203872 Msa0099140:CDS
TGGCAATGTAGACAATTCCA+AGG 0.607787 1_3:+5202722 Msa0099140:intron
TTATTGCTATTGATATACAC+AGG 0.608404 1_3:-5190939 None:intergenic
CATCTTTATGCATTCAACAG+TGG 0.608675 1_3:+5198224 Msa0099140:CDS
TATCAATAGTACTAATGGGG+TGG 0.610925 1_3:+5201986 Msa0099140:CDS
AGATGGCATTGAAAGAGGAT+GGG 0.611842 1_3:+5191226 Msa0099140:CDS
GTTGGCGTAAGCGGAGATGT+CGG 0.613403 1_3:-5195095 None:intergenic
AACAACAACGACGACAACAA+TGG 0.614821 1_3:+5195765 Msa0099140:CDS
TCAGAGACCCTTCAACTGCA+TGG 0.615717 1_3:+5190754 Msa0099140:CDS
CAACATAATCGACATCGACA+TGG 0.615996 1_3:+5194931 Msa0099140:CDS
TTGATGTCATAAGGTCCACT+TGG 0.616532 1_3:-5201573 None:intergenic
TATAAGGAGAGATATGTGAG+TGG 0.618483 1_3:+5195358 Msa0099140:CDS
GATAAGGCGGCGTTGTAGGG+TGG 0.618926 1_3:-5195037 None:intergenic
CCATTCTCAACAGCATTCCA+CGG 0.619851 1_3:-5195685 None:intergenic
AAGGAAATGATGGAAAATGG+AGG 0.623713 1_3:+5190778 Msa0099140:CDS
ATGGAAAAGATGGAAAATGG+AGG 0.623713 1_3:+5201817 Msa0099140:CDS
CCATTCCCTTAAGAAAGCGT+CGG 0.624107 1_3:-5201712 None:intergenic
GGCATGTTTGGCGATAAAAG+AGG 0.624808 1_3:+5197587 Msa0099140:CDS
GAGGCTGACTCCGAACAAGA+TGG 0.625858 1_3:+5191209 Msa0099140:CDS
TTGTAGGGTGGTCCGCGTGG+TGG 0.626810 1_3:-5195025 None:intergenic
GGAAAATGGAGGGTAATCAT+TGG 0.627171 1_3:+5190789 Msa0099140:CDS
CGTCGCCGAAGCGTTCGGCG+AGG 0.628476 1_3:-5195069 None:intergenic
GATACAGTGGCCAATTGAAG+AGG 0.629577 1_3:+5202777 Msa0099140:CDS
CCACCTAGTGGAGTTGAAGT+CGG 0.629703 1_3:+5190726 Msa0099140:CDS
GTGCTCAAAATGGTGATGAA+GGG 0.633107 1_3:+5201850 Msa0099140:CDS
TCCTCTTCAACTCCACTAGG+TGG 0.634405 1_3:-5201765 None:intergenic
GTGGGAAGAGATTGATACAG+TGG 0.634457 1_3:+5202764 Msa0099140:CDS
TTAGATACACTACCTTGGAA+GGG 0.637395 1_3:-5204063 None:intergenic
ATTATGGCGATGGGTAGAAG+AGG 0.638829 1_3:+5191190 Msa0099140:CDS
CCTTTGATGACTCCACCTAG+TGG 0.641854 1_3:+5190714 Msa0099140:CDS
CCTGTGATGACTCCACCTAG+TGG 0.641854 1_3:+5201753 Msa0099140:CDS
CAACAATGGAAGCCAAAGTG+TGG 0.645202 1_3:+5193023 Msa0099140:CDS
CTAAGCTAGAAAGTGGTGAG+TGG 0.649783 1_3:+5203023 Msa0099140:CDS
AGGAAATGATGGAAAATGGA+GGG 0.651406 1_3:+5190779 Msa0099140:CDS
TGGAAAAGATGGAAAATGGA+GGG 0.651406 1_3:+5201818 Msa0099140:CDS
TTCGGAGTTGAGGAGAGCAG+GGG 0.652756 1_3:+5195444 Msa0099140:CDS
TAATGGGGTGGATACATCTG+TGG 0.653909 1_3:+5201998 Msa0099140:CDS
ATGTTGATAGGGCTTTAGGG+AGG 0.654086 1_3:+5195644 Msa0099140:CDS
GAACATACGTAAGGTTCAGG+TGG 0.654767 1_3:-5195211 None:intergenic
AGATGATATAGAGAAAGGAT+GGG 0.654785 1_3:+5202259 Msa0099140:CDS
GTTGGAGTATAGTGATGATG+AGG 0.656125 1_3:+5195846 Msa0099140:CDS
TTAGTACTATTGATATACAC+AGG 0.657868 1_3:-5201978 None:intergenic
GTATATCAATAGTACTAATG+GGG 0.660746 1_3:+5201983 Msa0099140:CDS
ATTCAACAGTGGAAGAAGCA+GGG 0.663613 1_3:+5198235 Msa0099140:CDS
AAAACGCTTATCAGTATGGG+CGG 0.664829 1_3:+5204158 Msa0099140:three_prime_UTR
GAGGAAGATGAATGAAAGCG+TGG 0.667208 1_3:-5195120 None:intergenic
TATTACAGGAGAGAAACTTG+AGG 0.670674 1_3:+5202828 Msa0099140:CDS
CAACAATGGAAGTCAGAGTG+TGG 0.671906 1_3:+5203817 Msa0099140:CDS
GCATGCAGAGATAGGCCATG+AGG 0.672091 1_3:+5203871 Msa0099140:CDS
GCAGGAGAGACACTCCAAAG+TGG 0.676610 1_3:+5191777 Msa0099140:CDS
ATGCTGATTTGTGGGTGCCG+TGG 0.676696 1_3:+5195668 Msa0099140:CDS
GAGGGAAGCAATTCTTACAG+TGG 0.677964 1_3:+5197606 Msa0099140:CDS
CCGACTTCAACTCCACTAGG+TGG 0.683686 1_3:-5190726 None:intergenic
TTGCTGCAAGTGGATTATGT+TGG 0.684182 1_3:-5201470 None:intergenic
GTATATCAATAGCAATAATG+GGG 0.685553 1_3:+5190944 Msa0099140:CDS
TGATGATGAGGATTCTGATG+AGG 0.686403 1_3:+5195858 Msa0099140:CDS
ACCTGATCTAGAAAGTGCTG+AGG 0.688958 1_3:+5192085 Msa0099140:CDS
GCGTTGTAGGGTGGTCCGCG+TGG 0.689378 1_3:-5195028 None:intergenic
GTTTGTTGTCGAGGTCCCAG+AGG 0.689800 1_3:-5195003 None:intergenic
GCAGCCCCTATGTACTACAA+AGG 0.696410 1_3:+5201429 Msa0099140:intron
TACACCTTTGTAGTACATAG+GGG 0.703188 1_3:-5201433 None:intergenic
GAGGGATTTGAGAGATAAGG+CGG 0.706412 1_3:-5195050 None:intergenic
CTCGACAACAAACCACCACG+CGG 0.706944 1_3:+5195013 Msa0099140:CDS
ACAGGAGAGAAACTTGAGGG+TGG 0.721046 1_3:+5202832 Msa0099140:CDS
AAGAATAGGAGAATATTGTG+GGG 0.736283 1_3:+5202209 Msa0099140:CDS
GGTGTTTGTGAAGACTGTGG+AGG 0.763123 1_3:+5195465 Msa0099140:intron
GAAGATGAATGAAAGCGTGG+CGG 0.793373 1_3:-5195117 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGTAATGATTTTATTAAT+TGG + chr1_3:5190850-5190869 Msa0099140:intron 10.0%
!!! ATCGATAAAAATATATTTTA+AGG + chr1_3:5193405-5193424 Msa0099140:intron 10.0%
!!! ACATTTTAATTAGATTAATT+GGG - chr1_3:5193652-5193671 None:intergenic 10.0%
!!! AACATTTTAATTAGATTAAT+TGG - chr1_3:5193653-5193672 None:intergenic 10.0%
!!! TTATTTTAAATTATCTCATA+TGG + chr1_3:5193726-5193745 Msa0099140:intron 10.0%
!!! TTATTTTAAATTATCTCATA+TGG + chr1_3:5193726-5193745 Msa0099140:intron 10.0%
!!! ATTCAATTTAAAATATATTG+TGG - chr1_3:5193867-5193886 None:intergenic 10.0%
!! TTAAAACCTAAAATAAAAAT+AGG + chr1_3:5193947-5193966 Msa0099140:intron 10.0%
!! TAAAACCTAAAATAAAAATA+GGG + chr1_3:5193948-5193967 Msa0099140:intron 10.0%
!!! GTATATCTTTTAATTTTTTT+TGG + chr1_3:5200387-5200406 Msa0099140:intron 10.0%
!!! AATTAACATAATATGATTTT+AGG + chr1_3:5202563-5202582 Msa0099140:intron 10.0%
!!! TACTTTTTAATAACTTTTCA+AGG + chr1_3:5192037-5192056 Msa0099140:intron 15.0%
!! TGTTTCATAAAATATGTATT+AGG + chr1_3:5193616-5193635 Msa0099140:intron 15.0%
!!! ATTTTAATTAGATTAATTGG+GGG - chr1_3:5193650-5193669 None:intergenic 15.0%
!!! CATTTTAATTAGATTAATTG+GGG - chr1_3:5193651-5193670 None:intergenic 15.0%
!! ATTCAATTTAAACTATATTG+TGG - chr1_3:5193758-5193777 None:intergenic 15.0%
!!! ATTTAAAATATATTGTGGAA+AGG - chr1_3:5193862-5193881 None:intergenic 15.0%
!! AAAACCTAAAATAAAAATAG+GGG + chr1_3:5193949-5193968 Msa0099140:intron 15.0%
!!! TATTTTTCTATTTTTATGCA+AGG + chr1_3:5194251-5194270 Msa0099140:intron 15.0%
!! AGAAAAAAATAACTTTAAGT+AGG - chr1_3:5194295-5194314 None:intergenic 15.0%
!!! AATATTTTTTTTAGCGAATA+AGG - chr1_3:5194491-5194510 None:intergenic 15.0%
!! ATTATGTTCATAAAATTCAA+TGG - chr1_3:5196652-5196671 None:intergenic 15.0%
!! ATTTATATGTATTAAGATGT+AGG + chr1_3:5197510-5197529 Msa0099140:intron 15.0%
!!! TTAAACATCTATTTTAACTA+AGG + chr1_3:5198602-5198621 Msa0099140:intron 15.0%
!! AGTTTAAATATAATTCAGTT+TGG + chr1_3:5198768-5198787 Msa0099140:intron 15.0%
!! TTCATAATCAAATTAAAGTA+TGG + chr1_3:5198964-5198983 Msa0099140:intron 15.0%
!!! AATAAAAAATAGTTTTAGTG+AGG + chr1_3:5199546-5199565 Msa0099140:intron 15.0%
!! AATCCAATTAAATAGTTAAA+AGG - chr1_3:5199683-5199702 None:intergenic 15.0%
!!! AAAAGAAACCATTTTATTTT+TGG - chr1_3:5199737-5199756 None:intergenic 15.0%
!! TGAATTTAATGTACTTTATT+AGG - chr1_3:5199892-5199911 None:intergenic 15.0%
!!! ATTTAAATATAATTTCTAGC+TGG + chr1_3:5199929-5199948 Msa0099140:intron 15.0%
!! GGTATTATTTAATCATAATT+AGG + chr1_3:5200871-5200890 Msa0099140:intron 15.0%
!!! TATATTCAGTTTTTATTCAA+CGG - chr1_3:5201024-5201043 None:intergenic 15.0%
!! CTTGAAAACAATTAAAATTA+TGG - chr1_3:5202387-5202406 None:intergenic 15.0%
!!! AGAATTTATTTATTTTGAGA+TGG + chr1_3:5203935-5203954 Msa0099140:three_prime_UTR 15.0%
!!! GAATTTATTTATTTTGAGAT+GGG + chr1_3:5203936-5203955 Msa0099140:three_prime_UTR 15.0%
!! TATCAAATGATCTCATAAAT+TGG + chr1_3:5190487-5190506 Msa0099140:CDS 20.0%
!! TGTATATCAATAGCAATAAT+GGG + chr1_3:5190943-5190962 Msa0099140:CDS 20.0%
!! TAATTGTAATATCTACAATG+TGG - chr1_3:5192398-5192417 None:intergenic 20.0%
!!! CAATTTCTATTTTACTTACT+AGG - chr1_3:5192456-5192475 None:intergenic 20.0%
!!! GTTGTTTTTATTTGAAAGAA+CGG + chr1_3:5193186-5193205 Msa0099140:intron 20.0%
!! ATAAAATATGTATTAGGCTA+TGG + chr1_3:5193622-5193641 Msa0099140:intron 20.0%
!!! TTTTAATTAGATTAATTGGG+GGG - chr1_3:5193649-5193668 None:intergenic 20.0%
!! ATTTAAACTATATTGTGGAA+AGG - chr1_3:5193753-5193772 None:intergenic 20.0%
!!! TAATCCCCTATTTTTATTTT+AGG - chr1_3:5193956-5193975 None:intergenic 20.0%
!! TAGGAGAATAAAATTCATTA+AGG - chr1_3:5193993-5194012 None:intergenic 20.0%
!! ATATATATTAGAAACCCTAA+AGG - chr1_3:5194429-5194448 None:intergenic 20.0%
!! AAAAAATATTTCTTTGTGCT+CGG + chr1_3:5194501-5194520 Msa0099140:intron 20.0%
!! TTTAAATTCTAACTCATTCT+TGG + chr1_3:5194558-5194577 Msa0099140:intron 20.0%
!!! ATTTATTTTGTGATTTGTGA+TGG + chr1_3:5196252-5196271 Msa0099140:intron 20.0%
!!! TTTGTTTAACTTTGCATATA+TGG + chr1_3:5196363-5196382 Msa0099140:intron 20.0%
!! GGAAATTCTATTAATTAAAG+TGG - chr1_3:5196515-5196534 None:intergenic 20.0%
!! AACTACGTTAAAATAAAATG+AGG - chr1_3:5196543-5196562 None:intergenic 20.0%
!!! ATGTTGACATATTTTCTAAA+CGG + chr1_3:5196989-5197008 Msa0099140:intron 20.0%
!!! ACGATTAGTTTTTATTTATG+TGG + chr1_3:5197194-5197213 Msa0099140:intron 20.0%
!!! CGATTAGTTTTTATTTATGT+GGG + chr1_3:5197195-5197214 Msa0099140:intron 20.0%
!! TCAAATATAATGTTTGACTA+TGG + chr1_3:5197322-5197341 Msa0099140:intron 20.0%
!! ACTCTTTACTTATAACTTTA+TGG + chr1_3:5197466-5197485 Msa0099140:intron 20.0%
!! TTAATACATATAAATCACGT+TGG - chr1_3:5197505-5197524 None:intergenic 20.0%
!! TGCATAAAATATTCAATAAG+AGG - chr1_3:5197741-5197760 None:intergenic 20.0%
!!! TGATTTCTTTTAAAACTCTA+AGG + chr1_3:5197787-5197806 Msa0099140:intron 20.0%
!!! CTTTTTAGTACACTATTATT+AGG + chr1_3:5198380-5198399 Msa0099140:intron 20.0%
!!! CCAAAAGATAATTTTTTTGA+CGG - chr1_3:5198503-5198522 None:intergenic 20.0%
!!! TTCTGAAAATTATGAAGAAT+AGG + chr1_3:5198540-5198559 Msa0099140:intron 20.0%
!! ACAGTTAAATGACAAAAATA+TGG + chr1_3:5198884-5198903 Msa0099140:intron 20.0%
!! CAGTTAAATGACAAAAATAT+GGG + chr1_3:5198885-5198904 Msa0099140:intron 20.0%
!! TAATCAGTTTCATTATCTTA+CGG + chr1_3:5199215-5199234 Msa0099140:intron 20.0%
!! AAGTATTTAAATGTGCTTAT+TGG + chr1_3:5199572-5199591 Msa0099140:intron 20.0%
!!! CATTTTATTTTTGGTAAAAC+AGG - chr1_3:5199728-5199747 None:intergenic 20.0%
!!! CTGTTTTACCAAAAATAAAA+TGG + chr1_3:5199726-5199745 Msa0099140:intron 20.0%
!! TTCTATAATTGTATACTACT+TGG + chr1_3:5199828-5199847 Msa0099140:intron 20.0%
!!! TTTAGTTCTATAAAACCAAT+TGG - chr1_3:5199961-5199980 None:intergenic 20.0%
!!! AAATGATAAGAAGTTTTGTA+AGG - chr1_3:5200280-5200299 None:intergenic 20.0%
!! AAAAATAATTTGACATAGCT+TGG - chr1_3:5200341-5200360 None:intergenic 20.0%
!! TATCAATGGTTTATAACAAA+AGG - chr1_3:5200415-5200434 None:intergenic 20.0%
!!! TTTGTTATAAACCATTGATA+AGG + chr1_3:5200415-5200434 Msa0099140:intron 20.0%
!!! AAAATAATTAGCCTTATCAA+TGG - chr1_3:5200429-5200448 None:intergenic 20.0%
!! ATCATATAATGCTTATGTAT+AGG + chr1_3:5200723-5200742 Msa0099140:intron 20.0%
!!! CAAAAGTACTATTAACTTTT+CGG - chr1_3:5200811-5200830 None:intergenic 20.0%
!!! ATTTGGTGATATAATTGTAT+GGG + chr1_3:5201494-5201513 Msa0099140:CDS 20.0%
!! TGTATATCAATAGTACTAAT+GGG + chr1_3:5201982-5202001 Msa0099140:CDS 20.0%
!!! TTGATTTTAGTTATTTTAGC+AGG + chr1_3:5202322-5202341 Msa0099140:intron 20.0%
!!! ATTTTCCAATTTGAACTTTA+AGG + chr1_3:5202973-5202992 Msa0099140:intron 20.0%
!!! TATTTGAAGCTCTAAATATT+TGG - chr1_3:5203183-5203202 None:intergenic 20.0%
!!! GATTTTTATTTACAAACTGT+TGG + chr1_3:5203403-5203422 Msa0099140:intron 20.0%
!!! ATACTAGTTTGATATATATG+AGG + chr1_3:5203674-5203693 Msa0099140:intron 20.0%
!! GATAAATTCAATAACAAAGA+AGG - chr1_3:5203976-5203995 None:intergenic 20.0%
!! TTGGACTTATTTATCAAATT+TGG - chr1_3:5204027-5204046 None:intergenic 20.0%
! TAAACACCTTTATAGTACAT+TGG - chr1_3:5190396-5190415 None:intergenic 25.0%
! AACATTTGGTCATGAAAAAA+TGG + chr1_3:5190449-5190468 Msa0099140:CDS 25.0%
! ATATACACAGGAAAAAAATC+TGG - chr1_3:5190930-5190949 None:intergenic 25.0%
!! TTATTGCTATTGATATACAC+AGG - chr1_3:5190942-5190961 None:intergenic 25.0%
! GTGTATATCAATAGCAATAA+TGG + chr1_3:5190942-5190961 Msa0099140:CDS 25.0%
! GTATATCAATAGCAATAATG+GGG + chr1_3:5190944-5190963 Msa0099140:CDS 25.0%
! AAAGACTTAAGATTTGACTA+TGG + chr1_3:5191116-5191135 Msa0099140:CDS 25.0%
!!! ATGACTTTGAAGCATAAAAT+AGG - chr1_3:5191142-5191161 None:intergenic 25.0%
!!! TTTTTGACTATGCTAAGAAT+AGG + chr1_3:5191162-5191181 Msa0099140:CDS 25.0%
! CTAAGAATAGGAGAATATTA+TGG + chr1_3:5191174-5191193 Msa0099140:CDS 25.0%
!!! TTTTTGCTATAATTTGCGTA+AGG + chr1_3:5191293-5191312 Msa0099140:intron 25.0%
!!! ACCTTTTTTAAACCTTTGTA+TGG - chr1_3:5191341-5191360 None:intergenic 25.0%
!! GAATAGTTTTTACTCAAATG+TGG - chr1_3:5191523-5191542 None:intergenic 25.0%
! CTATTCGCAATATTAAGAAT+TGG + chr1_3:5191537-5191556 Msa0099140:intron 25.0%
!! AGTTTTTCTAACTCTTCAAT+TGG - chr1_3:5191735-5191754 None:intergenic 25.0%
!! AGAAGACTACAATATCTTTT+CGG + chr1_3:5192222-5192241 Msa0099140:CDS 25.0%
!! AAGAGTGTAAAAAAATAACC+TGG - chr1_3:5192297-5192316 None:intergenic 25.0%
! TTACAATTATAGAGAGAACT+CGG + chr1_3:5192409-5192428 Msa0099140:intron 25.0%
! TCATGGTTAAGATTAACAAT+TGG - chr1_3:5192593-5192612 None:intergenic 25.0%
! TCATGAAATTTAATCGTTCA+TGG - chr1_3:5192610-5192629 None:intergenic 25.0%
! CATCTTTATGTATTCAACAA+TGG + chr1_3:5193009-5193028 Msa0099140:CDS 25.0%
! GTATAAAGCTGAATAGAATT+TGG + chr1_3:5193103-5193122 Msa0099140:intron 25.0%
!! TTTTATTCTCCTATGACAAA+AGG + chr1_3:5194000-5194019 Msa0099140:intron 25.0%
! GGCTAATACAAAAAAAAGAA+CGG - chr1_3:5194071-5194090 None:intergenic 25.0%
! GCTTTATCTTGAGAATAAAA+GGG - chr1_3:5194092-5194111 None:intergenic 25.0%
!! CTTTTATTCTCAAGATAAAG+CGG + chr1_3:5194091-5194110 Msa0099140:intron 25.0%
! AATATATAGTTTACGCCTTT+AGG + chr1_3:5194411-5194430 Msa0099140:intron 25.0%
! ATATATAGTTTACGCCTTTA+GGG + chr1_3:5194412-5194431 Msa0099140:intron 25.0%
!! CTACCCAAATTTTAAATTCT+TGG + chr1_3:5194524-5194543 Msa0099140:intron 25.0%
!! GAGCCAAGAATTTAAAATTT+GGG - chr1_3:5194530-5194549 None:intergenic 25.0%
! AGTTAGAATTTAAACAACAG+CGG - chr1_3:5194552-5194571 None:intergenic 25.0%
!!! AAATGGATTAGATAATGCTA+TGG - chr1_3:5194782-5194801 None:intergenic 25.0%
!!! TTTGTTTTGTTTTTGTTCGT+AGG - chr1_3:5194975-5194994 None:intergenic 25.0%
!!! AGATTTTGAAACCAAAAGTT+GGG + chr1_3:5195410-5195429 Msa0099140:CDS 25.0%
!! AATGGAAGAAGATTTTATGT+TGG + chr1_3:5195828-5195847 Msa0099140:CDS 25.0%
!! TTCTTTTGTAAATGAAGCTA+AGG + chr1_3:5195922-5195941 Msa0099140:intron 25.0%
!! TGAAGTATATTCGACTTTTA+AGG + chr1_3:5196184-5196203 Msa0099140:intron 25.0%
! ACAAAACTGAAACAATTCAT+AGG - chr1_3:5196348-5196367 None:intergenic 25.0%
! TTAAAATAAAATGAGGAAGG+GGG - chr1_3:5196536-5196555 None:intergenic 25.0%
! GTTAAAATAAAATGAGGAAG+GGG - chr1_3:5196537-5196556 None:intergenic 25.0%
! CGTTAAAATAAAATGAGGAA+GGG - chr1_3:5196538-5196557 None:intergenic 25.0%
! ACGTTAAAATAAAATGAGGA+AGG - chr1_3:5196539-5196558 None:intergenic 25.0%
! TAGAGCAAATTCATATAGTA+TGG - chr1_3:5197141-5197160 None:intergenic 25.0%
!! TTTGACTATGGTAGATTTTA+TGG + chr1_3:5197334-5197353 Msa0099140:intron 25.0%
! AAGTTATAAGTAAAGAGTCA+TGG - chr1_3:5197464-5197483 None:intergenic 25.0%
! AAATATTCAATAAGAGGAAG+TGG - chr1_3:5197735-5197754 None:intergenic 25.0%
! CATCATACATACTTATTGTT+GGG - chr1_3:5197990-5198009 None:intergenic 25.0%
! ACATCATACATACTTATTGT+TGG - chr1_3:5197991-5198010 None:intergenic 25.0%
! ATATGCATGGAAAATAAGTT+TGG - chr1_3:5198052-5198071 None:intergenic 25.0%
! TGAAATGCAAAATATATGCA+TGG - chr1_3:5198065-5198084 None:intergenic 25.0%
! CATATATCAAACTATATGCA+TGG - chr1_3:5198102-5198121 None:intergenic 25.0%
! TGCATATAGTTTGATATATG+CGG + chr1_3:5198102-5198121 Msa0099140:intron 25.0%
! TATTATTAGGTGAAATCTTG+TGG + chr1_3:5198393-5198412 Msa0099140:intron 25.0%
!!! ATTTTGGAAAGCTATACTTT+AGG + chr1_3:5198446-5198465 Msa0099140:intron 25.0%
!! CCGTCAAAAAAATTATCTTT+TGG + chr1_3:5198500-5198519 Msa0099140:intron 25.0%
! AACGTAAAAGTGAGAAATAT+GGG - chr1_3:5198674-5198693 None:intergenic 25.0%
! CTCAAATATTAGAGAAAAGT+TGG + chr1_3:5198710-5198729 Msa0099140:intron 25.0%
!!! TGAAACTTTAGAACAATTAC+AGG + chr1_3:5198992-5199011 Msa0099140:intron 25.0%
! AAATGTTCAAAATCTCTTGA+GGG + chr1_3:5199033-5199052 Msa0099140:intron 25.0%
!! GTGAAATGTTACTTCAATAA+TGG - chr1_3:5199387-5199406 None:intergenic 25.0%
!!! GGTCCTTTTAACTATTTAAT+TGG + chr1_3:5199677-5199696 Msa0099140:intron 25.0%
!! TACTACTTGGATAATTTTGA+AGG + chr1_3:5199841-5199860 Msa0099140:intron 25.0%
!! AGTTTTTCATGATACAAGAA+TGG - chr1_3:5200138-5200157 None:intergenic 25.0%
! TTTCTGTTAAACAGTAGAAA+TGG + chr1_3:5200190-5200209 Msa0099140:intron 25.0%
! TTGTTGAAGAAAATTGATAG+TGG + chr1_3:5200469-5200488 Msa0099140:intron 25.0%
! ATAGATAAATAAAGTCAGTG+GGG - chr1_3:5200528-5200547 None:intergenic 25.0%
! GATAGATAAATAAAGTCAGT+GGG - chr1_3:5200529-5200548 None:intergenic 25.0%
! AGATAGATAAATAAAGTCAG+TGG - chr1_3:5200530-5200549 None:intergenic 25.0%
! GCTCAAAGTTTAAATACAAA+AGG - chr1_3:5200658-5200677 None:intergenic 25.0%
! AACAATCCTAATATCCAATT+CGG - chr1_3:5201050-5201069 None:intergenic 25.0%
! TGAAAAAACTTAACTATGAC+TGG - chr1_3:5201152-5201171 None:intergenic 25.0%
! GAAATAGTGTATACATAAGT+GGG - chr1_3:5201199-5201218 None:intergenic 25.0%
! AGAAATAGTGTATACATAAG+TGG - chr1_3:5201200-5201219 None:intergenic 25.0%
!!! TATACACTATTTCTGTAACT+AGG + chr1_3:5201206-5201225 Msa0099140:intron 25.0%
!! CTACTAGTATAAACACTTTT+GGG - chr1_3:5201296-5201315 None:intergenic 25.0%
!! TCTACTAGTATAAACACTTT+TGG - chr1_3:5201297-5201316 None:intergenic 25.0%
!! CATTTGGTGATATAATTGTA+TGG + chr1_3:5201493-5201512 Msa0099140:CDS 25.0%
! AATCCAATTAATGAGATCAT+AGG - chr1_3:5201532-5201551 None:intergenic 25.0%
! GTATTATCTGTTGCAAAAAA+TGG - chr1_3:5201930-5201949 None:intergenic 25.0%
!!! TTTTTTGCAACAGATAATAC+TGG + chr1_3:5201930-5201949 Msa0099140:intron 25.0%
! TTAGTACTATTGATATACAC+AGG - chr1_3:5201981-5202000 None:intergenic 25.0%
! GTGTATATCAATAGTACTAA+TGG + chr1_3:5201981-5202000 Msa0099140:CDS 25.0%
! GTATATCAATAGTACTAATG+GGG + chr1_3:5201983-5202002 Msa0099140:CDS 25.0%
!! TGGTAAATATGTTTCTGATA+AGG + chr1_3:5202088-5202107 Msa0099140:CDS 25.0%
!! AAAGATTTAAGGTTTGACTA+TGG + chr1_3:5202149-5202168 Msa0099140:intron 25.0%
!!! TTTTTGACTATGCTAAGAAT+AGG + chr1_3:5191162-5191181 Msa0099140:CDS 25.0%
! TAAGAATAGGAGAATATTGT+GGG + chr1_3:5202208-5202227 Msa0099140:CDS 25.0%
! GACTATGTTCATAAATCATA+AGG + chr1_3:5202360-5202379 Msa0099140:intron 25.0%
!! GATATAGTCTTAAAGTTTCA+CGG + chr1_3:5202623-5202642 Msa0099140:intron 25.0%
!!! TTTTCAAGATATTGTCAATG+TGG + chr1_3:5202665-5202684 Msa0099140:intron 25.0%
! GGTAAATGTATAATCTTGTT+TGG + chr1_3:5202702-5202721 Msa0099140:intron 25.0%
! ATCAACCTTAAAGTTCAAAT+TGG - chr1_3:5202981-5203000 None:intergenic 25.0%
! CATCTTTATGTATTCAACAA+TGG + chr1_3:5193009-5193028 Msa0099140:CDS 25.0%
! TAAGAAAGATATGGAGATTA+AGG + chr1_3:5203911-5203930 Msa0099140:exon 25.0%
! GACTTATTTATCAAATTTGG+TGG - chr1_3:5204024-5204043 None:intergenic 25.0%
TTGGTCATGAAAAAATGGTA+TGG + chr1_3:5190454-5190473 Msa0099140:CDS 30.0%
TGGTCATGAAAAAATGGTAT+GGG + chr1_3:5190455-5190474 Msa0099140:CDS 30.0%
TAAGGATCAGATAGATTCTT+TGG - chr1_3:5190663-5190682 None:intergenic 30.0%
ATCTATCTGATCCTTACTTA+TGG + chr1_3:5190667-5190686 Msa0099140:CDS 30.0%
TCTATCTGATCCTTACTTAT+GGG + chr1_3:5190668-5190687 Msa0099140:CDS 30.0%
TAAAGTAGAAGTCAAGATGT+CGG - chr1_3:5191028-5191047 None:intergenic 30.0%
CATCTTGACTTCTACTTTAT+TGG + chr1_3:5191029-5191048 Msa0099140:intron 30.0%
GTTCCTGATGTAATATATAC+AGG + chr1_3:5191086-5191105 Msa0099140:intron 30.0%
GTTCCTGTATATATTACATC+AGG - chr1_3:5191092-5191111 None:intergenic 30.0%
GCCATACAAAGGTTTAAAAA+AGG + chr1_3:5191337-5191356 Msa0099140:intron 30.0%
TTTCTTAAATCTTGGCATTG+CGG - chr1_3:5191382-5191401 None:intergenic 30.0%
CAATGCCAAGATTTAAGAAA+AGG + chr1_3:5191382-5191401 Msa0099140:intron 30.0%
! GCAAACCTTTTCTTAAATCT+TGG - chr1_3:5191390-5191409 None:intergenic 30.0%
!!! AGAGTGACTTTTTTAAGTCT+TGG - chr1_3:5191434-5191453 None:intergenic 30.0%
AAGACTTAAAAAAGTCACTC+TGG + chr1_3:5191433-5191452 Msa0099140:intron 30.0%
CAATATTAAGAATTGGCATG+TGG + chr1_3:5191544-5191563 Msa0099140:intron 30.0%
GATCAACTCTTGAAGTAAAA+GGG + chr1_3:5191799-5191818 Msa0099140:CDS 30.0%
TCAGGTACGTAATTAAACAA+TGG + chr1_3:5191833-5191852 Msa0099140:intron 30.0%
GTTAATATGAGTGTCATGTT+CGG - chr1_3:5191892-5191911 None:intergenic 30.0%
GAACAATATGCATCAAGAAA+AGG + chr1_3:5192149-5192168 Msa0099140:CDS 30.0%
CATCAAGAAAAGGAATGATA+GGG + chr1_3:5192159-5192178 Msa0099140:CDS 30.0%
ATATTGTAGTCTTCTCTGAT+TGG - chr1_3:5192217-5192236 None:intergenic 30.0%
TGTAAAAAAATAACCTGGTC+TGG - chr1_3:5192292-5192311 None:intergenic 30.0%
TTACTGCAGAAAATTTGAGT+AGG + chr1_3:5192667-5192686 Msa0099140:intron 30.0%
! TTAAGTTGTGTACACTTTAC+AGG + chr1_3:5192714-5192733 Msa0099140:intron 30.0%
TATGCAACTATCTTTGACAT+AGG + chr1_3:5192770-5192789 Msa0099140:CDS 30.0%
!!! AGTGAAATTGTTTTGAGATC+GGG - chr1_3:5192797-5192816 None:intergenic 30.0%
!!! GAGTGAAATTGTTTTGAGAT+CGG - chr1_3:5192798-5192817 None:intergenic 30.0%
!!! ATCCTAGTTTTATATACACG+AGG + chr1_3:5192878-5192897 Msa0099140:intron 30.0%
GTTAATATATGCAGATTGAC+CGG + chr1_3:5192902-5192921 Msa0099140:intron 30.0%
ATCTCCAAAACTCTCAATAA+TGG - chr1_3:5192929-5192948 None:intergenic 30.0%
!!! ATTATTGAGAGTTTTGGAGA+TGG + chr1_3:5192928-5192947 Msa0099140:CDS 30.0%
AAATAGAGTGTATCCCTTAT+TGG + chr1_3:5192969-5192988 Msa0099140:CDS 30.0%
TCTTTCTCTATAGCCAATAA+GGG - chr1_3:5192985-5193004 None:intergenic 30.0%
ATCTTTCTCTATAGCCAATA+AGG - chr1_3:5192986-5193005 None:intergenic 30.0%
TTATTTCACAACTGAATGCT+TGG + chr1_3:5193046-5193065 Msa0099140:CDS 30.0%
TATATAGACAAATCAAACCG+AGG - chr1_3:5193259-5193278 None:intergenic 30.0%
CGCTTTATCTTGAGAATAAA+AGG - chr1_3:5194093-5194112 None:intergenic 30.0%
ACTAAAAACACATTTAACCC+CGG + chr1_3:5194214-5194233 Msa0099140:intron 30.0%
AAATAATAGTGCATACGTTC+CGG - chr1_3:5194236-5194255 None:intergenic 30.0%
TAAGCATGAGAGACATTAAT+TGG - chr1_3:5194354-5194373 None:intergenic 30.0%
! GGAGCCAAGAATTTAAAATT+TGG - chr1_3:5194531-5194550 None:intergenic 30.0%
CATTATCTAATCCATTTCCA+TGG + chr1_3:5194785-5194804 Msa0099140:intron 30.0%
TTTCATTCATCTTCCTCAAT+GGG + chr1_3:5195126-5195145 Msa0099140:CDS 30.0%
AACCGTTTGAATTCTTTGAA+GGG + chr1_3:5195319-5195338 Msa0099140:CDS 30.0%
! AGAAGTATAATGATGCTGTT+AGG + chr1_3:5195386-5195405 Msa0099140:CDS 30.0%
GAAGTATAATGATGCTGTTA+GGG + chr1_3:5195387-5195406 Msa0099140:CDS 30.0%
!!! GAGATTTTGAAACCAAAAGT+TGG + chr1_3:5195409-5195428 Msa0099140:CDS 30.0%
!!! TGATGTGTTGTTTTTTCATG+AGG + chr1_3:5195798-5195817 Msa0099140:CDS 30.0%
!!! GATGTGTTGTTTTTTCATGA+GGG + chr1_3:5195799-5195818 Msa0099140:CDS 30.0%
ATCAATTACTACTCAACTAG+AGG + chr1_3:5195969-5195988 Msa0099140:intron 30.0%
TGTAATCAATGTATCAGTGT+CGG - chr1_3:5196057-5196076 None:intergenic 30.0%
! TGCATATATGGATTGCAATT+TGG + chr1_3:5196375-5196394 Msa0099140:intron 30.0%
! ATTTTACAACCATCATCCAA+GGG - chr1_3:5196481-5196500 None:intergenic 30.0%
! TATTTTACAACCATCATCCA+AGG - chr1_3:5196482-5196501 None:intergenic 30.0%
AAGTTAGAGCAGAATTGAAA+TGG + chr1_3:5196597-5196616 Msa0099140:intron 30.0%
AGTTAGAGCAGAATTGAAAT+GGG + chr1_3:5196598-5196617 Msa0099140:intron 30.0%
GAGATATATGAATTCTGAAC+AGG + chr1_3:5196767-5196786 Msa0099140:intron 30.0%
! TAAGCATACACACTCTTTTT+AGG + chr1_3:5196895-5196914 Msa0099140:intron 30.0%
AATATCGCTAGCATACAATT+TGG - chr1_3:5197037-5197056 None:intergenic 30.0%
!! ATGATACATAGTGGATAGTA+TGG - chr1_3:5197171-5197190 None:intergenic 30.0%
AATCGTTAGATGATACATAG+TGG - chr1_3:5197180-5197199 None:intergenic 30.0%
TCATAAACTGGAGAATATTG+TGG + chr1_3:5197364-5197383 Msa0099140:CDS 30.0%
CATAAACTGGAGAATATTGT+GGG + chr1_3:5197365-5197384 Msa0099140:CDS 30.0%
! TTTTTGGATGTCATCTAGTT+TGG - chr1_3:5197412-5197431 None:intergenic 30.0%
AAACTAGATGACATCCAAAA+AGG + chr1_3:5197411-5197430 Msa0099140:CDS 30.0%
ATAAATCACGTTGGTATATG+AGG - chr1_3:5197496-5197515 None:intergenic 30.0%
AAAAATCATGCTGGTGAATA+GGG + chr1_3:5197533-5197552 Msa0099140:intron 30.0%
TAACACAAGTACAATATCGA+TGG + chr1_3:5197764-5197783 Msa0099140:intron 30.0%
!! TTTGTTAGCTTTAGTTTCAG+AGG + chr1_3:5197920-5197939 Msa0099140:intron 30.0%
GCATATAGTTTGATATATGC+GGG + chr1_3:5198103-5198122 Msa0099140:intron 30.0%
CATATAGTTTGATATATGCG+GGG + chr1_3:5198104-5198123 Msa0099140:intron 30.0%
GTAGATTGATCGATCTATTA+TGG + chr1_3:5198136-5198155 Msa0099140:intron 30.0%
! GATCTATTATGGAGAGTTTT+TGG + chr1_3:5198147-5198166 Msa0099140:intron 30.0%
ACTGTTGAATGCATAAAGAT+GGG - chr1_3:5198225-5198244 None:intergenic 30.0%
TGATCTCAAAACTGAATACT+TGG + chr1_3:5198263-5198282 Msa0099140:CDS 30.0%
TAGCTTTCCAAAATTGATCA+TGG - chr1_3:5198440-5198459 None:intergenic 30.0%
AGCTTTCCAAAAATTGATCA+TGG - chr1_3:5198477-5198496 None:intergenic 30.0%
! TAGGTTGACAATAGAGAATA+AGG + chr1_3:5198559-5198578 Msa0099140:intron 30.0%
ACGTAAAAGTGAGAAATATG+GGG - chr1_3:5198673-5198692 None:intergenic 30.0%
GAACGTAAAAGTGAGAAATA+TGG - chr1_3:5198675-5198694 None:intergenic 30.0%
! TTCTTCATGCTCTAAATTAG+GGG - chr1_3:5198802-5198821 None:intergenic 30.0%
! CTTCTTCATGCTCTAAATTA+GGG - chr1_3:5198803-5198822 None:intergenic 30.0%
! TCTTCTTCATGCTCTAAATT+AGG - chr1_3:5198804-5198823 None:intergenic 30.0%
CAAATGTTCAAAATCTCTTG+AGG + chr1_3:5199032-5199051 Msa0099140:intron 30.0%
AGTTGTATGCAGAGAATATT+TGG + chr1_3:5199115-5199134 Msa0099140:intron 30.0%
! CATTTCACAGTTGATTTCAT+CGG - chr1_3:5199418-5199437 None:intergenic 30.0%
AACTGTGAAATGTTTGTTCA+GGG + chr1_3:5199426-5199445 Msa0099140:intron 30.0%
TTGCCCTATATTTGTTTACA+GGG - chr1_3:5199469-5199488 None:intergenic 30.0%
ATTGCCCTATATTTGTTTAC+AGG - chr1_3:5199470-5199489 None:intergenic 30.0%
! AATTGGATTTGATCTAAAGC+TGG + chr1_3:5199694-5199713 Msa0099140:intron 30.0%
TTGTTATAGTAAGTGTAGCT+AGG - chr1_3:5199779-5199798 None:intergenic 30.0%
!!! TGAAGGTTCAATCAGTTTTT+TGG + chr1_3:5199858-5199877 Msa0099140:intron 30.0%
CAGATAGGAATAATGGTTAT+TGG - chr1_3:5200008-5200027 None:intergenic 30.0%
CAATAACCATTATTCCTATC+TGG + chr1_3:5200006-5200025 Msa0099140:intron 30.0%
! TTTTCATGATACAAGAATGG+AGG - chr1_3:5200135-5200154 None:intergenic 30.0%
AAACAGTAGAAATGGAATTG+AGG + chr1_3:5200198-5200217 Msa0099140:intron 30.0%
! GTTTTGTAAGGTTGTTCTTT+AGG - chr1_3:5200268-5200287 None:intergenic 30.0%
! TACTATTAACTTTTCGGTTC+GGG - chr1_3:5200805-5200824 None:intergenic 30.0%
! GTACTATTAACTTTTCGGTT+CGG - chr1_3:5200806-5200825 None:intergenic 30.0%
TATGATCTTAAGTCCTAACA+CGG - chr1_3:5200898-5200917 None:intergenic 30.0%
TGTTAGGACTTAAGATCATA+AGG + chr1_3:5200898-5200917 Msa0099140:intron 30.0%
!!! ACCTAATGGACTAGTATTTT+GGG - chr1_3:5200933-5200952 None:intergenic 30.0%
!! GTAGATAAAAGTGTTTGATG+CGG - chr1_3:5200979-5200998 None:intergenic 30.0%
! TTTTTATTCAACGGTCTGTT+AGG - chr1_3:5201015-5201034 None:intergenic 30.0%
AACTGAATATAGAACCGAAT+TGG + chr1_3:5201033-5201052 Msa0099140:intron 30.0%
ATAGAACCGAATTGGATATT+AGG + chr1_3:5201041-5201060 Msa0099140:intron 30.0%
ATACACCTTTGTAGTACATA+GGG - chr1_3:5201437-5201456 None:intergenic 30.0%
TATACACCTTTGTAGTACAT+AGG - chr1_3:5201438-5201457 None:intergenic 30.0%
TGTCCTATGATCTCATTAAT+TGG + chr1_3:5201526-5201545 Msa0099140:CDS 30.0%
AACCATTCTTTATCAAAGTG+AGG + chr1_3:5201875-5201894 Msa0099140:intron 30.0%
ATCCTCACTTTGATAAAGAA+TGG - chr1_3:5201880-5201899 None:intergenic 30.0%
AAAGTGAGGATTTCGTTAAT+TGG + chr1_3:5201889-5201908 Msa0099140:intron 30.0%
! TCTGTTGCAAAAAATGGATT+TGG - chr1_3:5201924-5201943 None:intergenic 30.0%
ATATACACAGGAAAAAAGTC+TGG - chr1_3:5201969-5201988 None:intergenic 30.0%
CAGGAACTAGTAAAGATTTA+AGG + chr1_3:5202138-5202157 Msa0099140:intron 30.0%
CTAAGAATAGGAGAATATTG+TGG + chr1_3:5202207-5202226 Msa0099140:CDS 30.0%
AAGAATAGGAGAATATTGTG+GGG + chr1_3:5202209-5202228 Msa0099140:CDS 30.0%
AAGATGATATAGAGAAAGGA+TGG + chr1_3:5202258-5202277 Msa0099140:CDS 30.0%
AGATGATATAGAGAAAGGAT+GGG + chr1_3:5202259-5202278 Msa0099140:CDS 30.0%
CTAAAATCAAAATGCGAACA+TGG - chr1_3:5202312-5202331 None:intergenic 30.0%
TCAAACTACGCGAATAATAT+TGG - chr1_3:5202466-5202485 None:intergenic 30.0%
GGACTATAATGACATTAAGT+TGG - chr1_3:5202515-5202534 None:intergenic 30.0%
TGTTAATTAGATTCGTCCTT+TGG - chr1_3:5202551-5202570 None:intergenic 30.0%
TATTGCTAATGTACAAGACT+AGG + chr1_3:5202598-5202617 Msa0099140:intron 30.0%
TTAAAGTTTCACGGACAAAT+TGG + chr1_3:5202632-5202651 Msa0099140:intron 30.0%
! AATGTGGAAGAGTATGATAT+TGG + chr1_3:5202681-5202700 Msa0099140:intron 30.0%
!! AAGTTTGGCTTGATAAAAGT+GGG + chr1_3:5202746-5202765 Msa0099140:CDS 30.0%
! AGTTTTTCTACCTCTTCAAT+TGG - chr1_3:5202790-5202809 None:intergenic 30.0%
GACAAACAGATCAATATTAC+AGG + chr1_3:5202814-5202833 Msa0099140:CDS 30.0%
! TGTTTGCTACATAATAGTTG+AGG - chr1_3:5203073-5203092 None:intergenic 30.0%
AAACAATATGCATCAAGAAG+TGG + chr1_3:5203088-5203107 Msa0099140:CDS 30.0%
!! TTTGTTAGCTTTAGCTTCAA+AGG + chr1_3:5203129-5203148 Msa0099140:CDS 30.0%
ATGTTAGAAATAACCTGCTT+TGG - chr1_3:5203231-5203250 None:intergenic 30.0%
! TTAAGCTGTGTACATTTTAC+AGG + chr1_3:5203513-5203532 Msa0099140:intron 30.0%
!!! TTCCATATGTGGTTTTATCA+AGG - chr1_3:5203556-5203575 None:intergenic 30.0%
! AAGTCCATTATTGAGAGTTT+TGG + chr1_3:5203716-5203735 Msa0099140:CDS 30.0%
ATCTCCAAAACTCTCAATAA+TGG - chr1_3:5192929-5192948 None:intergenic 30.0%
!!! ATTATTGAGAGTTTTGGAGA+TGG + chr1_3:5192928-5192947 Msa0099140:CDS 30.0%
AAGTAGAGTGTATCCTTTAT+TGG + chr1_3:5203763-5203782 Msa0099140:CDS 30.0%
TCTTTCTCTATAGCCAATAA+AGG - chr1_3:5192985-5193004 None:intergenic 30.0%
TTATCTCAAAACTGAATGCT+TGG + chr1_3:5203840-5203859 Msa0099140:CDS 30.0%
GATTGTGCTTAAGAAAGATA+TGG + chr1_3:5203902-5203921 Msa0099140:exon 30.0%
TATCAAAACGCTTATCAGTA+TGG + chr1_3:5204154-5204173 Msa0099140:three_prime_UTR 30.0%
ATCAAAACGCTTATCAGTAT+GGG + chr1_3:5204155-5204174 Msa0099140:three_prime_UTR 30.0%
AGTATTTATTTGGCTGTGAC+AGG + chr1_3:5190369-5190388 Msa0099140:CDS 35.0%
ACAGGACCAATGTACTATAA+AGG + chr1_3:5190387-5190406 Msa0099140:CDS 35.0%
GGTCATGAAAAAATGGTATG+GGG + chr1_3:5190456-5190475 Msa0099140:CDS 35.0%
CAACAACTGTTTATGTCACT+AGG - chr1_3:5190546-5190565 None:intergenic 35.0%
CTAGTGACATAAACAGTTGT+TGG + chr1_3:5190544-5190563 Msa0099140:CDS 35.0%
AAACCTGCTATCTTGTATAC+AGG + chr1_3:5190597-5190616 Msa0099140:intron 35.0%
ATTCCTGTATACAAGATAGC+AGG - chr1_3:5190603-5190622 None:intergenic 35.0%
! GCATGGCTAAATTTTGAACT+TGG - chr1_3:5190641-5190660 None:intergenic 35.0%
ATCAGATAGATTCTTTGGCA+TGG - chr1_3:5190658-5190677 None:intergenic 35.0%
TGATCCTTACTTATGGGAAT+GGG + chr1_3:5190674-5190693 Msa0099140:CDS 35.0%
! TTTTCCCATTCCCATAAGTA+AGG - chr1_3:5190681-5190700 None:intergenic 35.0%
! AAGGAAATGATGGAAAATGG+AGG + chr1_3:5190778-5190797 Msa0099140:CDS 35.0%
! AGGAAATGATGGAAAATGGA+GGG + chr1_3:5190779-5190798 Msa0099140:CDS 35.0%
! GTAATCATTGGTGCTCAAAA+TGG + chr1_3:5190801-5190820 Msa0099140:CDS 35.0%
! TCTGTTGCATAGAATGGATT+AGG - chr1_3:5190885-5190904 None:intergenic 35.0%
GTATCATCTGTTGCATAGAA+TGG - chr1_3:5190891-5190910 None:intergenic 35.0%
TTCTATGCAACAGATGATAC+TGG + chr1_3:5190891-5190910 Msa0099140:CDS 35.0%
!! TAATGGGGTTGATACAACTA+TGG + chr1_3:5190959-5190978 Msa0099140:CDS 35.0%
ATATGCATCTGATTCTGATC+AGG + chr1_3:5191055-5191074 Msa0099140:intron 35.0%
GTCAAATCTTAAGTCTTTGC+TGG - chr1_3:5191114-5191133 None:intergenic 35.0%
ATAGGAGAATATTATGGCGA+TGG + chr1_3:5191180-5191199 Msa0099140:CDS 35.0%
TAGGAGAATATTATGGCGAT+GGG + chr1_3:5191181-5191200 Msa0099140:CDS 35.0%
TCTTTCAATGCCATCTTGTT+CGG - chr1_3:5191222-5191241 None:intergenic 35.0%
CGAAAATGTAGACAATTCCA+AGG + chr1_3:5191667-5191686 Msa0099140:intron 35.0%
! AGACAATTCCAAGGATGTTT+TGG + chr1_3:5191676-5191695 Msa0099140:intron 35.0%
!!! ATGTTTTGGCTTGATGAAAG+TGG + chr1_3:5191690-5191709 Msa0099140:CDS 35.0%
!!! TGTTTTGGCTTGATGAAAGT+GGG + chr1_3:5191691-5191710 Msa0099140:CDS 35.0%
GGATCAACTCTTGAAGTAAA+AGG + chr1_3:5191798-5191817 Msa0099140:CDS 35.0%
!! ATAACTTTTCAAGGCTGATG+TGG + chr1_3:5192046-5192065 Msa0099140:intron 35.0%
TGTTCTTTACAGAGTTCTTG+AGG - chr1_3:5192134-5192153 None:intergenic 35.0%
GCATCAAGAAAAGGAATGAT+AGG + chr1_3:5192158-5192177 Msa0099140:CDS 35.0%
AACAATTTCACTCAGAAGCT+TGG + chr1_3:5192805-5192824 Msa0099140:CDS 35.0%
CACCTCGTGTATATAAAACT+AGG - chr1_3:5192883-5192902 None:intergenic 35.0%
!! CAAAACTCTCAATAATGGAC+CGG - chr1_3:5192924-5192943 None:intergenic 35.0%
GTTGTGAAATAACCACACTT+TGG - chr1_3:5193038-5193057 None:intergenic 35.0%
CGGATTCTATTGTGTCAATA+TGG + chr1_3:5193206-5193225 Msa0099140:intron 35.0%
GTGTCAATATGGCAATATCA+TGG + chr1_3:5193217-5193236 Msa0099140:intron 35.0%
CAATATGGCAATATCATGGT+TGG + chr1_3:5193221-5193240 Msa0099140:intron 35.0%
TGAATCTGTGGTTCGAATTT+CGG - chr1_3:5193538-5193557 None:intergenic 35.0%
TCACTTAAGTAGTGAATCTG+TGG - chr1_3:5193550-5193569 None:intergenic 35.0%
TTCTCAAGATAAAGCGGTTA+TGG + chr1_3:5194097-5194116 Msa0099140:intron 35.0%
ATAAAGCGGTTATGGTGATT+TGG + chr1_3:5194105-5194124 Msa0099140:intron 35.0%
TCTACTAAAGAATCGAACTC+AGG + chr1_3:5194168-5194187 Msa0099140:intron 35.0%
AATAATAGTGCATACGTTCC+GGG - chr1_3:5194235-5194254 None:intergenic 35.0%
TAACCCATCCAAATTGACAT+CGG - chr1_3:5194596-5194615 None:intergenic 35.0%
ACACGCATAAAAGAATGAGT+TGG - chr1_3:5194635-5194654 None:intergenic 35.0%
TTTATGCGTGTAAGTTTCTG+AGG + chr1_3:5194644-5194663 Msa0099140:intron 35.0%
GGATTAGATAATGCTATGGA+TGG - chr1_3:5194778-5194797 None:intergenic 35.0%
! GATGTCGATTATGTTGTTGT+TGG - chr1_3:5194927-5194946 None:intergenic 35.0%
GACATGGTAAAAACCAAACA+AGG + chr1_3:5194947-5194966 Msa0099140:intron 35.0%
CTTTCATTCATCTTCCTCAA+TGG + chr1_3:5195125-5195144 Msa0099140:CDS 35.0%
GAACCGTTTGAATTCTTTGA+AGG + chr1_3:5195318-5195337 Msa0099140:CDS 35.0%
! ACCGTTTGAATTCTTTGAAG+GGG + chr1_3:5195320-5195339 Msa0099140:CDS 35.0%
TCCCCTTCAAAGAATTCAAA+CGG - chr1_3:5195324-5195343 None:intergenic 35.0%
TTGAAACCAAAAGTTGGGTA+TGG + chr1_3:5195415-5195434 Msa0099140:CDS 35.0%
ATGATGCATTCTATGAGTAG+AGG + chr1_3:5195526-5195545 Msa0099140:CDS 35.0%
TGATGCATTCTATGAGTAGA+GGG + chr1_3:5195527-5195546 Msa0099140:CDS 35.0%
!! AGGGATTGATTGGTTGTTTT+TGG + chr1_3:5195546-5195565 Msa0099140:CDS 35.0%
CTCACTAAAATCGGAATCAT+CGG - chr1_3:5195575-5195594 None:intergenic 35.0%
CCTCAACATCTCACTAAAAT+CGG - chr1_3:5195584-5195603 None:intergenic 35.0%
! TTTTAGTGAGATGTTGAGGA+AGG + chr1_3:5195585-5195604 Msa0099140:CDS 35.0%
AATTTAGGGACTGTTGTTGT+TGG + chr1_3:5195619-5195638 Msa0099140:CDS 35.0%
! ATTTAGGGACTGTTGTTGTT+GGG + chr1_3:5195620-5195639 Msa0099140:CDS 35.0%
! ACGACAACAATGGATGATTT+TGG + chr1_3:5195775-5195794 Msa0099140:CDS 35.0%
TCTGATGAAGAAGATGAAGA+TGG + chr1_3:5195883-5195902 Msa0099140:CDS 35.0%
CTGATGAAGAAGATGAAGAT+GGG + chr1_3:5195884-5195903 Msa0099140:CDS 35.0%
! TTTTACAACCATCATCCAAG+GGG - chr1_3:5196480-5196499 None:intergenic 35.0%
ATCTCTAACTAGCAAAACAC+TGG - chr1_3:5196752-5196771 None:intergenic 35.0%
AAAAACAGCCTTTCAGAACT+AGG + chr1_3:5196796-5196815 Msa0099140:intron 35.0%
!! TACTGATACCTAGTTCTGAA+AGG - chr1_3:5196807-5196826 None:intergenic 35.0%
TATCGTTCATCCAACTTTGT+GGG - chr1_3:5196842-5196861 None:intergenic 35.0%
! TAAATTGACAATGAGTGCTG+CGG - chr1_3:5196869-5196888 None:intergenic 35.0%
ACTATGATGTTGTCAACAAG+AGG - chr1_3:5197085-5197104 None:intergenic 35.0%
! CAACATCATAGTCTTACTAG+AGG + chr1_3:5197093-5197112 Msa0099140:intron 35.0%
! CATAGTCTTACTAGAGGAAA+AGG + chr1_3:5197099-5197118 Msa0099140:intron 35.0%
TTTGACAATGTGGGACTTAA+AGG + chr1_3:5197221-5197240 Msa0099140:intron 35.0%
! GATTTTATGTAGTCTACACC+AGG + chr1_3:5197263-5197282 Msa0099140:intron 35.0%
TATGGTTCGAAGTCATAAAC+TGG + chr1_3:5197352-5197371 Msa0099140:CDS 35.0%
TAGATGACATCCAAAAAGGA+TGG + chr1_3:5197415-5197434 Msa0099140:CDS 35.0%
AGATGACATCCAAAAAGGAT+GGG + chr1_3:5197416-5197435 Msa0099140:CDS 35.0%
AGATGTAGGAAAAATCATGC+TGG + chr1_3:5197524-5197543 Msa0099140:intron 35.0%
GAAAAATCATGCTGGTGAAT+AGG + chr1_3:5197532-5197551 Msa0099140:intron 35.0%
AGTTTGTCTACCTCTTCAAT+TGG - chr1_3:5197632-5197651 None:intergenic 35.0%
TATTCAATAAGAGGAAGTGG+AGG - chr1_3:5197732-5197751 None:intergenic 35.0%
! ATGTAGCAAAGAGTATGAAG+TGG + chr1_3:5197892-5197911 Msa0099140:intron 35.0%
ATGTAGAGTTTATCGTTCAC+TGG + chr1_3:5198184-5198203 Msa0099140:intron 35.0%
CACTGTTGAATGCATAAAGA+TGG - chr1_3:5198226-5198245 None:intergenic 35.0%
CATCTTTATGCATTCAACAG+TGG + chr1_3:5198224-5198243 Msa0099140:CDS 35.0%
ATGATTCTCCTAATCCTTCT+AGG - chr1_3:5198312-5198331 None:intergenic 35.0%
! GGAAAGCTATACTTTAGGAA+TGG + chr1_3:5198451-5198470 Msa0099140:intron 35.0%
! GAATGGCCATGATCAATTTT+TGG + chr1_3:5198431-5198450 Msa0099140:intron 35.0%
AGAGATCAAGAGAAGATATG+CGG + chr1_3:5198821-5198840 Msa0099140:intron 35.0%
AAAAAATCTATGAGCTGCCA+TGG + chr1_3:5199148-5199167 Msa0099140:intron 35.0%
TATAGCATTACACCTATCCA+TGG - chr1_3:5199168-5199187 None:intergenic 35.0%
GGCCTAAAACTCTAAATCAT+GGG + chr1_3:5199236-5199255 Msa0099140:intron 35.0%
TAAAATGTTCAAGTCTCGTG+AGG - chr1_3:5199323-5199342 None:intergenic 35.0%
CAACTGTGAAATGTTTGTTC+AGG + chr1_3:5199425-5199444 Msa0099140:intron 35.0%
TCTGCCCTGTAAACAAATAT+AGG + chr1_3:5199462-5199481 Msa0099140:intron 35.0%
CTGCCCTGTAAACAAATATA+GGG + chr1_3:5199463-5199482 Msa0099140:intron 35.0%
GTTAGACGGTAAGTAAAACT+TGG - chr1_3:5199618-5199637 None:intergenic 35.0%
GCTCTATCAGATCAATCAAA+TGG - chr1_3:5200073-5200092 None:intergenic 35.0%
GAAGATCAACAAAAGCAAGA+TGG - chr1_3:5200108-5200127 None:intergenic 35.0%
! GTATTGATCCTATCAAGTAC+AGG + chr1_3:5200239-5200258 Msa0099140:CDS 35.0%
TTAGGTATCCTGTACTTGAT+AGG - chr1_3:5200250-5200269 None:intergenic 35.0%
! TACCGTTCATCCAATTTTGT+GGG - chr1_3:5200309-5200328 None:intergenic 35.0%
! ATACCGTTCATCCAATTTTG+TGG - chr1_3:5200310-5200329 None:intergenic 35.0%
CTTCATTATGCAGATCCAAA+TGG + chr1_3:5200499-5200518 Msa0099140:intron 35.0%
GTGTATTGTTCAGTTCAAGA+AGG + chr1_3:5200749-5200768 Msa0099140:intron 35.0%
ACTTCTGTAGCAGTTTAGTT+CGG - chr1_3:5200778-5200797 None:intergenic 35.0%
!! TTGCGAACCAAACTGATTTT+TGG + chr1_3:5200828-5200847 Msa0099140:intron 35.0%
!! TGCGAACCAAACTGATTTTT+GGG + chr1_3:5200829-5200848 Msa0099140:intron 35.0%
TCGATTCCCAAAAATCAGTT+TGG - chr1_3:5200838-5200857 None:intergenic 35.0%
GGAATCGAACTATATCAAGT+TGG + chr1_3:5200850-5200869 Msa0099140:intron 35.0%
ATCATAATTAGGACCGTGTT+AGG + chr1_3:5200882-5200901 Msa0099140:intron 35.0%
!!! ATGGACTAGTATTTTGGGTT+GGG - chr1_3:5200928-5200947 None:intergenic 35.0%
!!! AATGGACTAGTATTTTGGGT+TGG - chr1_3:5200929-5200948 None:intergenic 35.0%
ACCCAAAATACTAGTCCATT+AGG + chr1_3:5200929-5200948 Msa0099140:intron 35.0%
!!! CACCTAATGGACTAGTATTT+TGG - chr1_3:5200934-5200953 None:intergenic 35.0%
CAAAATACTAGTCCATTAGG+TGG + chr1_3:5200932-5200951 Msa0099140:intron 35.0%
GTTTGTGAACTATTTGTCAC+TGG - chr1_3:5201100-5201119 None:intergenic 35.0%
TAAGCCATTTGATTCCTGTT+TGG - chr1_3:5201335-5201354 None:intergenic 35.0%
TACACCTTTGTAGTACATAG+GGG - chr1_3:5201436-5201455 None:intergenic 35.0%
! GATTATGTTGGTAGAAAAGG+TGG - chr1_3:5201461-5201480 None:intergenic 35.0%
! GTGGATTATGTTGGTAGAAA+AGG - chr1_3:5201464-5201483 None:intergenic 35.0%
CAACAACTGTTGATGTCATA+AGG - chr1_3:5201585-5201604 None:intergenic 35.0%
CTTATGACATCAACAGTTGT+TGG + chr1_3:5201583-5201602 Msa0099140:CDS 35.0%
! AAATAGCAGGTTTTTCACCT+GGG - chr1_3:5201629-5201648 None:intergenic 35.0%
! AAAATAGCAGGTTTTTCACC+TGG - chr1_3:5201630-5201649 None:intergenic 35.0%
!!! AAACCTGCTATTTTGTACAC+AGG + chr1_3:5201636-5201655 Msa0099140:intron 35.0%
ATTCCTGTGTACAAAATAGC+AGG - chr1_3:5201642-5201661 None:intergenic 35.0%
ATGGAAAAGATGGAAAATGG+AGG + chr1_3:5201817-5201836 Msa0099140:CDS 35.0%
TGGAAAAGATGGAAAATGGA+GGG + chr1_3:5201818-5201837 Msa0099140:CDS 35.0%
TGAGGATTTCGTTAATTGGA+CGG + chr1_3:5201893-5201912 Msa0099140:intron 35.0%
TATCAATAGTACTAATGGGG+TGG + chr1_3:5201986-5202005 Msa0099140:CDS 35.0%
CTGTGGATAATTCAAGTGTT+AGG + chr1_3:5202015-5202034 Msa0099140:CDS 35.0%
! CAGCATGACTACTATTTTCT+TGG + chr1_3:5202068-5202087 Msa0099140:CDS 35.0%
ACGCAAGATGATATAGAGAA+AGG + chr1_3:5202254-5202273 Msa0099140:CDS 35.0%
!! TTGTTTTCAAGACTATGCTG+AGG + chr1_3:5202396-5202415 Msa0099140:intron 35.0%
!! ACATTAAGTTGGTCATGTCA+GGG - chr1_3:5202504-5202523 None:intergenic 35.0%
AATTAGATTCGTCCTTTGGT+TGG - chr1_3:5202547-5202566 None:intergenic 35.0%
!! CAAGTTTGGCTTGATAAAAG+TGG + chr1_3:5202745-5202764 Msa0099140:CDS 35.0%
TATTACAGGAGAGAAACTTG+AGG + chr1_3:5202828-5202847 Msa0099140:CDS 35.0%
ATTACAGGAGAGAAACTTGA+GGG + chr1_3:5202829-5202848 Msa0099140:CDS 35.0%
GCTAAAGCTAACAAACCAAA+TGG - chr1_3:5203124-5203143 None:intergenic 35.0%
GACCTTGATAAAACCACATA+TGG + chr1_3:5203551-5203570 Msa0099140:intron 35.0%
!! AGTGAAATCGTTCTGAGATT+AGG - chr1_3:5203596-5203615 None:intergenic 35.0%
AACGATTTCACTTAGAAGCT+TGG + chr1_3:5203604-5203623 Msa0099140:intron 35.0%
TTAGATACACTACCTTGGAA+GGG - chr1_3:5204066-5204085 None:intergenic 35.0%
ATTAGATACACTACCTTGGA+AGG - chr1_3:5204067-5204086 None:intergenic 35.0%
CCAAATTAGATACACTACCT+TGG - chr1_3:5204071-5204090 None:intergenic 35.0%
CCAAGGTAGTGTATCTAATT+TGG + chr1_3:5204068-5204087 Msa0099140:three_prime_UTR 35.0%
!! GATAAGCGTTTTGATAAGTC+AGG - chr1_3:5204150-5204169 None:intergenic 35.0%
TTGCTGCATCAGGGTTATAT+TGG - chr1_3:5190431-5190450 None:intergenic 40.0%
TTTATGTCACTAGGCACACT+TGG - chr1_3:5190537-5190556 None:intergenic 40.0%
GACATAAACAGTTGTTGGTC+AGG + chr1_3:5190549-5190568 Msa0099140:CDS 40.0%
!! TTTTTCACCAGGGAGTATAG+TGG - chr1_3:5190580-5190599 None:intergenic 40.0%
! AGATAGCAGGTTTTTCACCA+GGG - chr1_3:5190590-5190609 None:intergenic 40.0%
! AAGATAGCAGGTTTTTCACC+AGG - chr1_3:5190591-5190610 None:intergenic 40.0%
CTGATCCTTACTTATGGGAA+TGG + chr1_3:5190673-5190692 Msa0099140:CDS 40.0%
! GGAGTCATCAAAGGATTTTG+AGG - chr1_3:5190708-5190727 None:intergenic 40.0%
! GGCAAGGAAATGATGGAAAA+TGG + chr1_3:5190775-5190794 Msa0099140:CDS 40.0%
GGAAAATGGAGGGTAATCAT+TGG + chr1_3:5190789-5190808 Msa0099140:CDS 40.0%
! GAACAAGATGGCATTGAAAG+AGG + chr1_3:5191221-5191240 Msa0099140:CDS 40.0%
! AAGATGGCATTGAAAGAGGA+TGG + chr1_3:5191225-5191244 Msa0099140:CDS 40.0%
! AGATGGCATTGAAAGAGGAT+GGG + chr1_3:5191226-5191245 Msa0099140:CDS 40.0%
!! ATTGTATAACGGATAGCGCA+CGG - chr1_3:5191589-5191608 None:intergenic 40.0%
TCATCAAGCCAAAACATCCT+TGG - chr1_3:5191687-5191706 None:intergenic 40.0%
!!! GTTTTGGCTTGATGAAAGTG+GGG + chr1_3:5191692-5191711 Msa0099140:CDS 40.0%
! CTTCAAGAGTTGATCCACTT+TGG - chr1_3:5191794-5191813 None:intergenic 40.0%
AAAGGAATGATAGGGCCATT+TGG + chr1_3:5192167-5192186 Msa0099140:CDS 40.0%
!! GCCATTTGGTTTGAAAGCTT+TGG + chr1_3:5192181-5192200 Msa0099140:CDS 40.0%
GCCAAAGCTTTCAAACCAAA+TGG - chr1_3:5192185-5192204 None:intergenic 40.0%
! TTTTCGGATATACAGAGTCG+TGG + chr1_3:5192238-5192257 Msa0099140:CDS 40.0%
GGAAGTCATGGATAAGAGAA+AGG + chr1_3:5192430-5192449 Msa0099140:intron 40.0%
CTGCAGAAAATTTGAGTAGG+TGG + chr1_3:5192670-5192689 Msa0099140:intron 40.0%
CACTTTACAGGTCTTCATTG+AGG + chr1_3:5192726-5192745 Msa0099140:intron 40.0%
! CGGTCCATTATTGAGAGTTT+TGG + chr1_3:5192922-5192941 Msa0099140:CDS 40.0%
!!! ATTGAGAGTTTTGGAGATGG+AGG + chr1_3:5192931-5192950 Msa0099140:CDS 40.0%
!!! TTGAGAGTTTTGGAGATGGA+GGG + chr1_3:5192932-5192951 Msa0099140:CDS 40.0%
AGCATGAAACAAGCAGAGTT+TGG + chr1_3:5193069-5193088 Msa0099140:CDS 40.0%
!!! GTTGGTCTTTTAGTTCACCT+CGG + chr1_3:5193239-5193258 Msa0099140:intron 40.0%
! AGACATGAGCCTTTTGTCAT+AGG - chr1_3:5194012-5194031 None:intergenic 40.0%
! GGTTATGGTGATTTGGAGTT+CGG + chr1_3:5194112-5194131 Msa0099140:intron 40.0%
ATAATAGTGCATACGTTCCG+GGG - chr1_3:5194234-5194253 None:intergenic 40.0%
GATTCTCTCCGATGTCAATT+TGG + chr1_3:5194585-5194604 Msa0099140:intron 40.0%
TCTCCGATGTCAATTTGGAT+GGG + chr1_3:5194590-5194609 Msa0099140:intron 40.0%
GATAATGCTATGGATGGTCA+TGG - chr1_3:5194772-5194791 None:intergenic 40.0%
TCACATTGCTTCCATGGAAA+TGG - chr1_3:5194799-5194818 None:intergenic 40.0%
ATTTCCATGGAAGCAATGTG+AGG + chr1_3:5194798-5194817 Msa0099140:intron 40.0%
TTTCCATGGAAGCAATGTGA+GGG + chr1_3:5194799-5194818 Msa0099140:intron 40.0%
! TGTTGTTGTTGGAACAGCAT+TGG - chr1_3:5194916-5194935 None:intergenic 40.0%
CAACATAATCGACATCGACA+TGG + chr1_3:5194931-5194950 Msa0099140:CDS 40.0%
TTGTTCGTAGGTTCCTTGTT+TGG - chr1_3:5194963-5194982 None:intergenic 40.0%
AAAACAAAGTCTGTGTCCTC+TGG + chr1_3:5194987-5195006 Msa0099140:intron 40.0%
AAACAAAGTCTGTGTCCTCT+GGG + chr1_3:5194988-5195007 Msa0099140:intron 40.0%
! AGTCGAGGTTTTTACGTTCA+CGG - chr1_3:5195165-5195184 None:intergenic 40.0%
TGATGATACCTTTACGTTCG+AGG - chr1_3:5195189-5195208 None:intergenic 40.0%
ACAGAACATACGTAAGGTTC+AGG - chr1_3:5195217-5195236 None:intergenic 40.0%
! ATTCTTTGAAGGGGAAGAAG+AGG + chr1_3:5195329-5195348 Msa0099140:CDS 40.0%
ACCAAAAGTTGGGTATGGTT+TGG + chr1_3:5195420-5195439 Msa0099140:CDS 40.0%
CTATGAGTAGAGGGATTGAT+TGG + chr1_3:5195536-5195555 Msa0099140:CDS 40.0%
!! CCGATTTTAGTGAGATGTTG+AGG + chr1_3:5195581-5195600 Msa0099140:CDS 40.0%
AAGGCTAGAGAGGCTAATTT+AGG + chr1_3:5195604-5195623 Msa0099140:CDS 40.0%
AGGCTAGAGAGGCTAATTTA+GGG + chr1_3:5195605-5195624 Msa0099140:CDS 40.0%
! TTTAGGGACTGTTGTTGTTG+GGG + chr1_3:5195621-5195640 Msa0099140:CDS 40.0%
! TTGTTGTTGGGGATGTTGAT+AGG + chr1_3:5195632-5195651 Msa0099140:CDS 40.0%
TGTTGTTGGGGATGTTGATA+GGG + chr1_3:5195633-5195652 Msa0099140:CDS 40.0%
TGTTGAGAATGGTGAGGTTA+CGG + chr1_3:5195696-5195715 Msa0099140:intron 40.0%
TGAGGTTACGGATATGGATT+TGG + chr1_3:5195708-5195727 Msa0099140:intron 40.0%
! TGGATTTGGTTCCAAGGAAT+AGG + chr1_3:5195722-5195741 Msa0099140:CDS 40.0%
! GGATTTGGTTCCAAGGAATA+GGG + chr1_3:5195723-5195742 Msa0099140:CDS 40.0%
CTTCTTCTATCCCTATTCCT+TGG - chr1_3:5195736-5195755 None:intergenic 40.0%
AACAACAACGACGACAACAA+TGG + chr1_3:5195765-5195784 Msa0099140:CDS 40.0%
! GTTGGAGTATAGTGATGATG+AGG + chr1_3:5195846-5195865 Msa0099140:CDS 40.0%
! TGATGATGAGGATTCTGATG+AGG + chr1_3:5195858-5195877 Msa0099140:CDS 40.0%
CTGAAGTAGTAGTGCTACAT+AGG - chr1_3:5196014-5196033 None:intergenic 40.0%
TTATTGTGTCGTGCTTGTGT+CGG + chr1_3:5196107-5196126 Msa0099140:intron 40.0%
TCATAGAAGTTGAGGGATTG+AGG + chr1_3:5196134-5196153 Msa0099140:intron 40.0%
GCTAGTACTGCTTGAATTTC+AGG + chr1_3:5196303-5196322 Msa0099140:intron 40.0%
CTTGAATTTCAGGATTGCCT+CGG + chr1_3:5196313-5196332 Msa0099140:intron 40.0%
!!! GGTTTTAACTCTGCAACTTG+AGG - chr1_3:5196459-5196478 None:intergenic 40.0%
AGTTAAAACCCCTTGGATGA+TGG + chr1_3:5196469-5196488 Msa0099140:intron 40.0%
TTATCTAAGCTGTAGCTTCC+AGG + chr1_3:5196693-5196712 Msa0099140:intron 40.0%
!!! GTTCTGAAAGGCTGTTTTTC+AGG - chr1_3:5196795-5196814 None:intergenic 40.0%
ATCGTTCATCCAACTTTGTG+GGG - chr1_3:5196841-5196860 None:intergenic 40.0%
GTATCGTTCATCCAACTTTG+TGG - chr1_3:5196843-5196862 None:intergenic 40.0%
!! ACATAGTGGATAGTATGGCA+AGG - chr1_3:5197166-5197185 None:intergenic 40.0%
ATGTGGGAACTTTGACAATG+TGG + chr1_3:5197211-5197230 Msa0099140:intron 40.0%
TGTGGGAACTTTGACAATGT+GGG + chr1_3:5197212-5197231 Msa0099140:intron 40.0%
TACCAACAAAGTAGTAGTCC+TGG - chr1_3:5197284-5197303 None:intergenic 40.0%
TGAAATTCGAGACGATTCCA+GGG + chr1_3:5197566-5197585 Msa0099140:intron 40.0%
GCATGTTTGGCGATAAAAGA+GGG + chr1_3:5197588-5197607 Msa0099140:CDS 40.0%
GGTAGACAAACTAGTATGAC+AGG + chr1_3:5197640-5197659 Msa0099140:intron 40.0%
GATACATGTGACTTCAAGAG+TGG - chr1_3:5197686-5197705 None:intergenic 40.0%
TCACTGCATCACAAGTAAAC+TGG + chr1_3:5197704-5197723 Msa0099140:intron 40.0%
TTTGTTTGAGCTACCTGAAC+TGG + chr1_3:5197823-5197842 Msa0099140:intron 40.0%
TCTTTGCTACATAGCAGTTG+GGG - chr1_3:5197884-5197903 None:intergenic 40.0%
CTCTTTGCTACATAGCAGTT+GGG - chr1_3:5197885-5197904 None:intergenic 40.0%
ACTCTTTGCTACATAGCAGT+TGG - chr1_3:5197886-5197905 None:intergenic 40.0%
ATTCAACAGTGGAAGAAGCA+GGG + chr1_3:5198235-5198254 Msa0099140:CDS 40.0%
AGTATGAAGCAAGCAGAGTT+TGG + chr1_3:5198286-5198305 Msa0099140:intron 40.0%
CTTGTGGCTCTCAATACTTT+AGG + chr1_3:5198409-5198428 Msa0099140:intron 40.0%
! GGCTCTCAATACTTTAGGAA+TGG + chr1_3:5198414-5198433 Msa0099140:intron 40.0%
! GGAATGGCCATGATCAATTT+TGG + chr1_3:5198430-5198449 Msa0099140:intron 40.0%
ATCAAGAGAAGATATGCGGT+GGG + chr1_3:5198825-5198844 Msa0099140:intron 40.0%
CGGCCTAAAACTCTAAATCA+TGG + chr1_3:5199235-5199254 Msa0099140:intron 40.0%
!! GGCCCATGATTTAGAGTTTT+AGG - chr1_3:5199241-5199260 None:intergenic 40.0%
ATATCCAGAGTTCGGTTAGA+CGG - chr1_3:5199632-5199651 None:intergenic 40.0%
! GAGTTCTGATATCCAGAGTT+CGG - chr1_3:5199640-5199659 None:intergenic 40.0%
ATCAGAACTCCTTTCTCTTG+AGG + chr1_3:5199650-5199669 Msa0099140:intron 40.0%
TCTAGCTGGAACTATCCAAT+TGG + chr1_3:5199943-5199962 Msa0099140:intron 40.0%
AGAGGACCAGATAGGAATAA+TGG - chr1_3:5200015-5200034 None:intergenic 40.0%
!! CATACTGATCTGTCACTTTG+TGG - chr1_3:5200040-5200059 None:intergenic 40.0%
ATGATACAAGAATGGAGGAG+TGG - chr1_3:5200130-5200149 None:intergenic 40.0%
! ATTTTCAGCCCCCACAAAAT+TGG + chr1_3:5200296-5200315 Msa0099140:CDS 40.0%
! ACCGTTCATCCAATTTTGTG+GGG - chr1_3:5200308-5200327 None:intergenic 40.0%
! ACACTTTTATCTACTCGACG+TGG + chr1_3:5200985-5201004 Msa0099140:intron 40.0%
! CACTTTTATCTACTCGACGT+GGG + chr1_3:5200986-5201005 Msa0099140:intron 40.0%
! TGTCACTGGTCAGTTCTTTT+CGG - chr1_3:5201086-5201105 None:intergenic 40.0%
GTTCATGAACGGAACAAGTT+CGG - chr1_3:5201127-5201146 None:intergenic 40.0%
TATGACTGGCAGTTCATGAA+CGG - chr1_3:5201138-5201157 None:intergenic 40.0%
CACTCCAAACAGGAATCAAA+TGG + chr1_3:5201328-5201347 Msa0099140:intron 40.0%
!! TTGCTGCAAGTGGATTATGT+TGG - chr1_3:5201473-5201492 None:intergenic 40.0%
AATCCACTTGCAGCAACATT+TGG + chr1_3:5201477-5201496 Msa0099140:CDS 40.0%
AACATTGCTCTTGAACCAAG+TGG + chr1_3:5201558-5201577 Msa0099140:CDS 40.0%
TTGATGTCATAAGGTCCACT+TGG - chr1_3:5201576-5201595 None:intergenic 40.0%
!! TTTTTCACCTGGGAGTATAG+TGG - chr1_3:5201619-5201638 None:intergenic 40.0%
!! AAAGCGTCGGTTAGATTCTT+TGG - chr1_3:5201702-5201721 None:intergenic 40.0%
ATCTAACCGACGCTTTCTTA+AGG + chr1_3:5201706-5201725 Msa0099140:CDS 40.0%
TCTAACCGACGCTTTCTTAA+GGG + chr1_3:5201707-5201726 Msa0099140:CDS 40.0%
! GAGTCATCACAGGATTTTGA+GGG - chr1_3:5201746-5201765 None:intergenic 40.0%
TTATCCTCTTCAACTCCACT+AGG - chr1_3:5201771-5201790 None:intergenic 40.0%
GGCATGGAAAAGATGGAAAA+TGG + chr1_3:5201814-5201833 Msa0099140:CDS 40.0%
GGAAAATGGAGGGTAATTGT+CGG + chr1_3:5201828-5201847 Msa0099140:CDS 40.0%
! GTAATTGTCGGTGCTCAAAA+TGG + chr1_3:5201840-5201859 Msa0099140:CDS 40.0%
! GTGCTCAAAATGGTGATGAA+GGG + chr1_3:5190811-5190830 Msa0099140:CDS 40.0%
GTTCCTGATGTAGAGTTTAC+AGG + chr1_3:5202119-5202138 Msa0099140:intron 40.0%
GTTCCTGTAAACTCTACATC+AGG - chr1_3:5202125-5202144 None:intergenic 40.0%
ATAGGAGAATATTGTGGGGT+TGG + chr1_3:5202213-5202232 Msa0099140:CDS 40.0%
TAGGAGAATATTGTGGGGTT+GGG + chr1_3:5202214-5202233 Msa0099140:CDS 40.0%
!! GACATTAAGTTGGTCATGTC+AGG - chr1_3:5202505-5202524 None:intergenic 40.0%
! TCCTTTGGTTGGTATTTGCA+GGG - chr1_3:5202536-5202555 None:intergenic 40.0%
TGGCAATGTAGACAATTCCA+AGG + chr1_3:5202722-5202741 Msa0099140:intron 40.0%
AGACAATTCCAAGGCAAGTT+TGG + chr1_3:5202731-5202750 Msa0099140:intron 40.0%
TTATCAAGCCAAACTTGCCT+TGG - chr1_3:5202742-5202761 None:intergenic 40.0%
AGTTGAGGATCAACTTCACT+TGG - chr1_3:5203058-5203077 None:intergenic 40.0%
GCATCAAGAAGTGGCAAAAT+AGG + chr1_3:5203097-5203116 Msa0099140:CDS 40.0%
AGTGGCAAAATAGGACCATT+TGG + chr1_3:5203106-5203125 Msa0099140:CDS 40.0%
ACTGTTGGATCTTCATGCAA+TGG + chr1_3:5203418-5203437 Msa0099140:intron 40.0%
TGCACGTATTGAAGGAATCT+CGG - chr1_3:5203444-5203463 None:intergenic 40.0%
TTCCTAACTGCAGGAAATTC+TGG + chr1_3:5203473-5203492 Msa0099140:intron 40.0%
GTCGAAGATTGTTCCATATG+TGG - chr1_3:5203567-5203586 None:intergenic 40.0%
!!! ATTGAGAGTTTTGGAGATGG+AGG + chr1_3:5192931-5192950 Msa0099140:CDS 40.0%
CACAATCTGTATTTCCCTCA+TGG - chr1_3:5203889-5203908 None:intergenic 40.0%
GGGAAATTGACACATTGGAT+TGG - chr1_3:5204046-5204065 None:intergenic 40.0%
TGGAAGGGAAATTGACACAT+TGG - chr1_3:5204051-5204070 None:intergenic 40.0%
ATGTGTCAATTTCCCTTCCA+AGG + chr1_3:5204051-5204070 Msa0099140:three_prime_UTR 40.0%
AAAACGCTTATCAGTATGGG+CGG + chr1_3:5204158-5204177 Msa0099140:three_prime_UTR 40.0%
AACCCTGATGCAGCAACATT+TGG + chr1_3:5190435-5190454 Msa0099140:CDS 45.0%
GACCAAATGTTGCTGCATCA+GGG - chr1_3:5190440-5190459 None:intergenic 45.0%
TGACCAAATGTTGCTGCATC+AGG - chr1_3:5190441-5190460 None:intergenic 45.0%
TTCCTTGCCATGCAGTTGAA+GGG - chr1_3:5190764-5190783 None:intergenic 45.0%
TTTCCTTGCCATGCAGTTGA+AGG - chr1_3:5190765-5190784 None:intergenic 45.0%
ACTGCATGGCAAGGAAATGA+TGG + chr1_3:5190768-5190787 Msa0099140:CDS 45.0%
! GGTGCTCAAAATGGTGATGA+AGG + chr1_3:5190810-5190829 Msa0099140:CDS 45.0%
ATTATGGCGATGGGTAGAAG+AGG + chr1_3:5191190-5191209 Msa0099140:CDS 45.0%
TAAGGTTTGCGATCTCGATC+TGG + chr1_3:5191311-5191330 Msa0099140:intron 45.0%
AAAGGTCTGCGATGTCAATC+TGG + chr1_3:5191355-5191374 Msa0099140:intron 45.0%
AAAGGTTTGCGATCTCGAGT+TGG + chr1_3:5191400-5191419 Msa0099140:intron 45.0%
CACTCTGGACTGCAATATCA+AGG + chr1_3:5191448-5191467 Msa0099140:intron 45.0%
GACAAGCAAATCAGTATCGC+AGG + chr1_3:5191759-5191778 Msa0099140:CDS 45.0%
AAAAGGGATCACTGCATCTC+AGG + chr1_3:5191815-5191834 Msa0099140:CDS 45.0%
!! GTTCGGTGTTCGTACTTCAT+AGG - chr1_3:5191875-5191894 None:intergenic 45.0%
!! ACCTGATCTAGAAAGTGCTG+AGG + chr1_3:5192085-5192104 Msa0099140:CDS 45.0%
ACCTCAGCACTTTCTAGATC+AGG - chr1_3:5192089-5192108 None:intergenic 45.0%
TCTTGAGGATCAACTTCGCT+TGG - chr1_3:5192119-5192138 None:intergenic 45.0%
TGATGATAAGTGACCAGACC+AGG + chr1_3:5192276-5192295 Msa0099140:CDS 45.0%
TAGAGAGAACTCGGAAGTCA+TGG + chr1_3:5192418-5192437 Msa0099140:intron 45.0%
TTACAGGTCTTCATTGAGGC+AGG + chr1_3:5192730-5192749 Msa0099140:intron 45.0%
CAACAATGGAAGCCAAAGTG+TGG + chr1_3:5193023-5193042 Msa0099140:CDS 45.0%
GCATAGTTGCAGAACATTGC+AGG + chr1_3:5193512-5193531 Msa0099140:intron 45.0%
CTCTCCGATGTCAATTTGGA+TGG + chr1_3:5194589-5194608 Msa0099140:intron 45.0%
!! TGGATGGTCATGGATTAGAG+TGG - chr1_3:5194762-5194781 None:intergenic 45.0%
!!! TTTTGGTTTGAGGGAGAGGA+AGG - chr1_3:5194879-5194898 None:intergenic 45.0%
!!! AGGTTGGGGTTTTGGTTTGA+GGG - chr1_3:5194888-5194907 None:intergenic 45.0%
! ACAGCATTGGATACGAGGTT+GGG - chr1_3:5194903-5194922 None:intergenic 45.0%
! AACAGCATTGGATACGAGGT+TGG - chr1_3:5194904-5194923 None:intergenic 45.0%
! TTGGAACAGCATTGGATACG+AGG - chr1_3:5194908-5194927 None:intergenic 45.0%
GAGGGATTTGAGAGATAAGG+CGG - chr1_3:5195053-5195072 None:intergenic 45.0%
! GAAGATGAATGAAAGCGTGG+CGG - chr1_3:5195120-5195139 None:intergenic 45.0%
GAGGAAGATGAATGAAAGCG+TGG - chr1_3:5195123-5195142 None:intergenic 45.0%
GAACATACGTAAGGTTCAGG+TGG - chr1_3:5195214-5195233 None:intergenic 45.0%
CCACAGACAGAACATACGTA+AGG - chr1_3:5195223-5195242 None:intergenic 45.0%
CCTTACGTATGTTCTGTCTG+TGG + chr1_3:5195220-5195239 Msa0099140:intron 45.0%
! GCCAAACCATACCCAACTTT+TGG - chr1_3:5195424-5195443 None:intergenic 45.0%
! AGTTGGGTATGGTTTGGCTT+CGG + chr1_3:5195426-5195445 Msa0099140:CDS 45.0%
ATAAGCCTCAAGCTGCTGAT+TGG + chr1_3:5195488-5195507 Msa0099140:CDS 45.0%
! TAAGCCTCAAGCTGCTGATT+GGG + chr1_3:5195489-5195508 Msa0099140:CDS 45.0%
! GGGATGTTGATAGGGCTTTA+GGG + chr1_3:5195641-5195660 Msa0099140:CDS 45.0%
!! ATGTTGATAGGGCTTTAGGG+AGG + chr1_3:5195644-5195663 Msa0099140:CDS 45.0%
CCATTCTCAACAGCATTCCA+CGG - chr1_3:5195688-5195707 None:intergenic 45.0%
GAATGCTGTTGAGAATGGTG+AGG + chr1_3:5195690-5195709 Msa0099140:intron 45.0%
GAATGGTGAGGTTACGGATA+TGG + chr1_3:5195702-5195721 Msa0099140:intron 45.0%
! CGGATATGGATTTGGTTCCA+AGG + chr1_3:5195716-5195735 Msa0099140:CDS 45.0%
!!! GTTGTTTTTTCATGAGGGCG+AGG + chr1_3:5195804-5195823 Msa0099140:CDS 45.0%
! TTTTCATGAGGGCGAGGAAA+TGG + chr1_3:5195810-5195829 Msa0099140:CDS 45.0%
! TCGGTGCTTCATAGAAGTTG+AGG + chr1_3:5196126-5196145 Msa0099140:intron 45.0%
CGGTGCTTCATAGAAGTTGA+GGG + chr1_3:5196127-5196146 Msa0099140:intron 45.0%
!! CAGTACTAGCTTTAGCAGGA+TGG - chr1_3:5196293-5196312 None:intergenic 45.0%
!! CAAGCAGTACTAGCTTTAGC+AGG - chr1_3:5196297-5196316 None:intergenic 45.0%
TTCATAGGAGAGATGTACCG+AGG - chr1_3:5196333-5196352 None:intergenic 45.0%
TAGCCATTGAAGTGCACTTG+AGG + chr1_3:5196400-5196419 Msa0099140:intron 45.0%
GTTGCAGAGTTAAAACCCCT+TGG + chr1_3:5196462-5196481 Msa0099140:intron 45.0%
TAAGCTGTAGCTTCCAGGAT+GGG + chr1_3:5196698-5196717 Msa0099140:intron 45.0%
ACTTTCATCCCCCACAAAGT+TGG + chr1_3:5196829-5196848 Msa0099140:intron 45.0%
TCGTTCATCCAACTTTGTGG+GGG - chr1_3:5196840-5196859 None:intergenic 45.0%
CACCAGGACTACTACTTTGT+TGG + chr1_3:5197279-5197298 Msa0099140:intron 45.0%
ACTGGAGAATATTGTGGGCA+TGG + chr1_3:5197370-5197389 Msa0099140:CDS 45.0%
! GTACATCAGCCCATCCTTTT+TGG - chr1_3:5197428-5197447 None:intergenic 45.0%
!! AAAAGGATGGGCTGATGTAC+AGG + chr1_3:5197428-5197447 Msa0099140:CDS 45.0%
GTGAAATTCGAGACGATTCC+AGG + chr1_3:5197565-5197584 Msa0099140:intron 45.0%
! TTTTATCGCCAAACATGCCC+TGG - chr1_3:5197586-5197605 None:intergenic 45.0%
GGCATGTTTGGCGATAAAAG+AGG + chr1_3:5197587-5197606 Msa0099140:CDS 45.0%
GAGGGAAGCAATTCTTACAG+TGG + chr1_3:5197606-5197625 Msa0099140:CDS 45.0%
CTTACAGTGGCCAATTGAAG+AGG + chr1_3:5197619-5197638 Msa0099140:CDS 45.0%
ATGACAGGAGAGATACTCGT+AGG + chr1_3:5197655-5197674 Msa0099140:intron 45.0%
CACTCAACACTTTCCAGTTC+AGG - chr1_3:5197839-5197858 None:intergenic 45.0%
TGAGTGACTTCATCTGAGTG+AGG + chr1_3:5197853-5197872 Msa0099140:intron 45.0%
CATTCAACAGTGGAAGAAGC+AGG + chr1_3:5198234-5198253 Msa0099140:CDS 45.0%
GAGTTTGGCCTAGAAGGATT+AGG + chr1_3:5198301-5198320 Msa0099140:intron 45.0%
GATCAAGAGAAGATATGCGG+TGG + chr1_3:5198824-5198843 Msa0099140:intron 45.0%
CGAGTTCGAAACAACTGCAA+TGG - chr1_3:5199071-5199090 None:intergenic 45.0%
! TTGCAGTTGTTTCGAACTCG+AGG + chr1_3:5199071-5199090 Msa0099140:intron 45.0%
ATCTATGAGCTGCCATGGAT+AGG + chr1_3:5199153-5199172 Msa0099140:intron 45.0%
ACTCCTTTCTCTTGAGGCTT+TGG + chr1_3:5199656-5199675 Msa0099140:intron 45.0%
!! ATCTGTCACTTTGTGGCAAG+AGG - chr1_3:5200033-5200052 None:intergenic 45.0%
! CCGTTCATCCAATTTTGTGG+GGG - chr1_3:5200307-5200326 None:intergenic 45.0%
CCCCCACAAAATTGGATGAA+CGG + chr1_3:5200304-5200323 Msa0099140:CDS 45.0%
AAGTCAGTGGGGTTACCATT+TGG - chr1_3:5200517-5200536 None:intergenic 45.0%
TGATGCGGTACTTAAGCCAT+GGG - chr1_3:5200964-5200983 None:intergenic 45.0%
TTGATGCGGTACTTAAGCCA+TGG - chr1_3:5200965-5200984 None:intergenic 45.0%
AAGCTCAAGTCACTCCAAAC+AGG + chr1_3:5201318-5201337 Msa0099140:intron 45.0%
TCACCAAATGTTGCTGCAAG+TGG - chr1_3:5201483-5201502 None:intergenic 45.0%
GACATCAACAGTTGTTGGTC+AGG + chr1_3:5201588-5201607 Msa0099140:CDS 45.0%
! CCATTCCCTTAAGAAAGCGT+CGG - chr1_3:5201715-5201734 None:intergenic 45.0%
CGACGCTTTCTTAAGGGAAT+GGG + chr1_3:5201713-5201732 Msa0099140:CDS 45.0%
! GGAGTCATCACAGGATTTTG+AGG - chr1_3:5201747-5201766 None:intergenic 45.0%
TTAGAGACCCTTCAACTGCA+TGG + chr1_3:5201793-5201812 Msa0099140:CDS 45.0%
TTCCATGCCATGCAGTTGAA+GGG - chr1_3:5201803-5201822 None:intergenic 45.0%
TTTCCATGCCATGCAGTTGA+AGG - chr1_3:5201804-5201823 None:intergenic 45.0%
ACTGCATGGCATGGAAAAGA+TGG + chr1_3:5201807-5201826 Msa0099140:CDS 45.0%
! GGTGCTCAAAATGGTGATGA+AGG + chr1_3:5190810-5190829 Msa0099140:CDS 45.0%
TAATGGGGTGGATACATCTG+TGG + chr1_3:5201998-5202017 Msa0099140:CDS 45.0%
GATATAGAGAAAGGATGGGC+AGG + chr1_3:5202263-5202282 Msa0099140:CDS 45.0%
TCCCTGCAAATACCAACCAA+AGG + chr1_3:5202532-5202551 Msa0099140:intron 45.0%
! GTCCTTTGGTTGGTATTTGC+AGG - chr1_3:5202537-5202556 None:intergenic 45.0%
GTGGGAAGAGATTGATACAG+TGG + chr1_3:5202764-5202783 Msa0099140:CDS 45.0%
GATACAGTGGCCAATTGAAG+AGG + chr1_3:5202777-5202796 Msa0099140:CDS 45.0%
GGCTCAACTCTTGAAATCTC+AGG + chr1_3:5202853-5202872 Msa0099140:CDS 45.0%
GAGCTACCTAAGCTAGAAAG+TGG + chr1_3:5203016-5203035 Msa0099140:CDS 45.0%
!! CACTCACCACTTTCTAGCTT+AGG - chr1_3:5203025-5203044 None:intergenic 45.0%
CTAAGCTAGAAAGTGGTGAG+TGG + chr1_3:5203023-5203042 Msa0099140:CDS 45.0%
ACCTCGTATAGACTATAGCG+AGG + chr1_3:5203306-5203325 Msa0099140:intron 45.0%
CCTCGTATAGACTATAGCGA+GGG + chr1_3:5203307-5203326 Msa0099140:intron 45.0%
AGAACACGTGCACGTATTGA+AGG - chr1_3:5203452-5203471 None:intergenic 45.0%
! CGTGTTCTTTTCCTAACTGC+AGG + chr1_3:5203464-5203483 Msa0099140:intron 45.0%
GACCAGAATTTCCTGCAGTT+AGG - chr1_3:5203478-5203497 None:intergenic 45.0%
CAACAATGGAAGTCAGAGTG+TGG + chr1_3:5203817-5203836 Msa0099140:CDS 45.0%
AGCATGAAGCATGCAGAGAT+AGG + chr1_3:5203863-5203882 Msa0099140:CDS 45.0%
!! TATATAATATAATTGTATAA+CGG - chr1_3:5191600-5191619 None:intergenic 5.0%
!!! TTTATTTAAGATAATTTATT+TGG + chr1_3:5193140-5193159 Msa0099140:intron 5.0%
!!! TTATTTAAGATAATTTATTT+GGG + chr1_3:5193141-5193160 Msa0099140:intron 5.0%
!! TATATATATATATATATGTT+AGG + chr1_3:5193339-5193358 Msa0099140:intron 5.0%
CCACTAGGTGGAGTCATCAA+AGG - chr1_3:5190717-5190736 None:intergenic 50.0%
! CCTTTGATGACTCCACCTAG+TGG + chr1_3:5190714-5190733 Msa0099140:CDS 50.0%
CCACCTAGTGGAGTTGAAGT+CGG + chr1_3:5190726-5190745 Msa0099140:CDS 50.0%
!! TCACCGACTTCAACTCCACT+AGG - chr1_3:5190732-5190751 None:intergenic 50.0%
TCAGAGACCCTTCAACTGCA+TGG + chr1_3:5190754-5190773 Msa0099140:CDS 50.0%
!! AAGAGGATGGGCTGGTTTAC+AGG + chr1_3:5191238-5191257 Msa0099140:CDS 50.0%
CGATCTGGACTGCCATACAA+AGG + chr1_3:5191326-5191345 Msa0099140:intron 50.0%
! TGATTTGGAGTTCGGTCGAG+AGG + chr1_3:5194120-5194139 Msa0099140:intron 50.0%
! GTAGAAGTGGAGAGTGTGGA+GGG - chr1_3:5194846-5194865 None:intergenic 50.0%
! TGTAGAAGTGGAGAGTGTGG+AGG - chr1_3:5194847-5194866 None:intergenic 50.0%
TTTGAGGGAGAGGAAGGAGT+GGG - chr1_3:5194873-5194892 None:intergenic 50.0%
!!! GAGGTTGGGGTTTTGGTTTG+AGG - chr1_3:5194889-5194908 None:intergenic 50.0%
! TGGATACGAGGTTGGGGTTT+TGG - chr1_3:5194896-5194915 None:intergenic 50.0%
! CAGCATTGGATACGAGGTTG+GGG - chr1_3:5194902-5194921 None:intergenic 50.0%
AGAGATAAGGCGGCGTTGTA+GGG - chr1_3:5195043-5195062 None:intergenic 50.0%
GGCGAGGGATTTGAGAGATA+AGG - chr1_3:5195056-5195075 None:intergenic 50.0%
! ATGAATGAAAGCGTGGCGGT+TGG - chr1_3:5195116-5195135 None:intergenic 50.0%
! CGTTGGTTGAGAACCCATTG+AGG - chr1_3:5195142-5195161 None:intergenic 50.0%
! GGTTTTTACGTTCACGGCGT+TGG - chr1_3:5195159-5195178 None:intergenic 50.0%
CTTTACGTTCGAGGAAGTCG+AGG - chr1_3:5195180-5195199 None:intergenic 50.0%
CTCGACTTCCTCGAACGTAA+AGG + chr1_3:5195178-5195197 Msa0099140:CDS 50.0%
! ATGGTTTGGCTTCGGAGTTG+AGG + chr1_3:5195434-5195453 Msa0099140:CDS 50.0%
!! AGGGGTGTTTGTGAAGACTG+TGG + chr1_3:5195462-5195481 Msa0099140:intron 50.0%
GGTGTTTGTGAAGACTGTGG+AGG + chr1_3:5195465-5195484 Msa0099140:intron 50.0%
AAAGCCCAATCAGCAGCTTG+AGG - chr1_3:5195496-5195515 None:intergenic 50.0%
GATGTTGAGGAAGGCTAGAG+AGG + chr1_3:5195594-5195613 Msa0099140:CDS 50.0%
! GGGGATGTTGATAGGGCTTT+AGG + chr1_3:5195640-5195659 Msa0099140:CDS 50.0%
!! TAGGGAGGCATGCTGATTTG+TGG + chr1_3:5195659-5195678 Msa0099140:CDS 50.0%
!! AGGGAGGCATGCTGATTTGT+GGG + chr1_3:5195660-5195679 Msa0099140:CDS 50.0%
CCGTGGAATGCTGTTGAGAA+TGG + chr1_3:5195685-5195704 Msa0099140:intron 50.0%
GCACCTCAAGTGCACTTCAA+TGG - chr1_3:5196406-5196425 None:intergenic 50.0%
! TGAAGTGCACTTGAGGTGCT+AGG + chr1_3:5196407-5196426 Msa0099140:intron 50.0%
CTAAGCTGTAGCTTCCAGGA+TGG + chr1_3:5196697-5196716 Msa0099140:intron 50.0%
TCTAAATACCCTGCCCATCC+TGG - chr1_3:5196714-5196733 None:intergenic 50.0%
AGACGATTCCAGGGCATGTT+TGG + chr1_3:5197575-5197594 Msa0099140:intron 50.0%
ACAGGAGAGATACTCGTAGG+TGG + chr1_3:5197658-5197677 Msa0099140:intron 50.0%
CAAGCAGAGTTTGGCCTAGA+AGG + chr1_3:5198295-5198314 Msa0099140:intron 50.0%
AAGAGAAGATATGCGGTGGG+TGG + chr1_3:5198828-5198847 Msa0099140:intron 50.0%
CTTACCGTCTAACCGAACTC+TGG + chr1_3:5199625-5199644 Msa0099140:intron 50.0%
GGACCAAAGCCTCAAGAGAA+AGG - chr1_3:5199662-5199681 None:intergenic 50.0%
TTGTGGCAAGAGGACCAGAT+AGG - chr1_3:5200023-5200042 None:intergenic 50.0%
TAGTACATAGGGGCTGCAAG+AGG - chr1_3:5201426-5201445 None:intergenic 50.0%
GCAGCCCCTATGTACTACAA+AGG + chr1_3:5201429-5201448 Msa0099140:intron 50.0%
CCGACGCTTTCTTAAGGGAA+TGG + chr1_3:5201712-5201731 Msa0099140:CDS 50.0%
TCCACCTAGTGGAGTTGAAG+AGG + chr1_3:5190725-5190744 Msa0099140:CDS 50.0%
TCCTCTTCAACTCCACTAGG+TGG - chr1_3:5201768-5201787 None:intergenic 50.0%
GAAAGGATGGGCAGGTTTAC+AGG + chr1_3:5202271-5202290 Msa0099140:CDS 50.0%
CTGAGGTTCGTCTATCTGTC+TGG + chr1_3:5202413-5202432 Msa0099140:intron 50.0%
TCGTCTATCTGTCTGGACTC+TGG + chr1_3:5202420-5202439 Msa0099140:intron 50.0%
TTGGTCATGTCAGGGTCTCA+GGG - chr1_3:5202496-5202515 None:intergenic 50.0%
ACAGGAGAGAAACTTGAGGG+TGG + chr1_3:5202832-5202851 Msa0099140:CDS 50.0%
CTCAGGCATCAATGCATCAC+AGG + chr1_3:5202870-5202889 Msa0099140:CDS 50.0%
TGATGTGCAGTGACCAAAGC+AGG + chr1_3:5203215-5203234 Msa0099140:CDS 50.0%
CCCTCGCTATAGTCTATACG+AGG - chr1_3:5203310-5203329 None:intergenic 50.0%
CATGCAGAGATAGGCCATGA+GGG + chr1_3:5203872-5203891 Msa0099140:CDS 50.0%
GGCTCAACCACTATACTCCC+TGG + chr1_3:5190570-5190589 Msa0099140:CDS 55.0%
CCGACTTCAACTCCACTAGG+TGG - chr1_3:5190729-5190748 None:intergenic 55.0%
GACCCTTCAACTGCATGGCA+AGG + chr1_3:5190759-5190778 Msa0099140:CDS 55.0%
! GAGGCTGACTCCGAACAAGA+TGG + chr1_3:5191209-5191228 Msa0099140:CDS 55.0%
! GGCATTGAAAGAGGATGGGC+TGG + chr1_3:5191230-5191249 Msa0099140:CDS 55.0%
GTGGGGAGAGATTGATGCAG+TGG + chr1_3:5191709-5191728 Msa0099140:CDS 55.0%
GCAGGAGAGACACTCCAAAG+TGG + chr1_3:5191777-5191796 Msa0099140:CDS 55.0%
GCTCCCTCACATTGCTTCCA+TGG - chr1_3:5194805-5194824 None:intergenic 55.0%
GGGTGTAGAAGTGGAGAGTG+TGG - chr1_3:5194850-5194869 None:intergenic 55.0%
TTGAGGGAGAGGAAGGAGTG+GGG - chr1_3:5194872-5194891 None:intergenic 55.0%
GTTTGAGGGAGAGGAAGGAG+TGG - chr1_3:5194874-5194893 None:intergenic 55.0%
!!! GGGGTTTTGGTTTGAGGGAG+AGG - chr1_3:5194883-5194902 None:intergenic 55.0%
!! GTTTGTTGTCGAGGTCCCAG+AGG - chr1_3:5195006-5195025 None:intergenic 55.0%
CTCGACAACAAACCACCACG+CGG + chr1_3:5195013-5195032 Msa0099140:CDS 55.0%
GAGAGATAAGGCGGCGTTGT+AGG - chr1_3:5195044-5195063 None:intergenic 55.0%
AAATCCCTCGCCGAACGCTT+CGG + chr1_3:5195064-5195083 Msa0099140:CDS 55.0%
GTTGGCGTAAGCGGAGATGT+CGG - chr1_3:5195098-5195117 None:intergenic 55.0%
CTTCGGAGTTGAGGAGAGCA+GGG + chr1_3:5195443-5195462 Msa0099140:CDS 55.0%
TTCGGAGTTGAGGAGAGCAG+GGG + chr1_3:5195444-5195463 Msa0099140:CDS 55.0%
!! ATGCTGATTTGTGGGTGCCG+TGG + chr1_3:5195668-5195687 Msa0099140:CDS 55.0%
! CACTTGAGGTGCTAGGTCAG+TGG + chr1_3:5196414-5196433 Msa0099140:intron 55.0%
TGTAGCTTCCAGGATGGGCA+GGG + chr1_3:5196703-5196722 Msa0099140:intron 55.0%
ACACGTGAGCAGAGCAACGT+GGG - chr1_3:5199262-5199281 None:intergenic 55.0%
CATGGGACTCTGCCACCTAA+TGG - chr1_3:5200947-5200966 None:intergenic 55.0%
CATTAGGTGGCAGAGTCCCA+TGG + chr1_3:5200945-5200964 Msa0099140:intron 55.0%
GGTTCAGCCACTATACTCCC+AGG + chr1_3:5201609-5201628 Msa0099140:CDS 55.0%
CCACTAGGTGGAGTCATCAC+AGG - chr1_3:5201756-5201775 None:intergenic 55.0%
CCTGTGATGACTCCACCTAG+TGG + chr1_3:5201753-5201772 Msa0099140:CDS 55.0%
GACCCTTCAACTGCATGGCA+TGG + chr1_3:5190759-5190778 Msa0099140:CDS 55.0%
GTTGGTCATGTCAGGGTCTC+AGG - chr1_3:5202497-5202516 None:intergenic 55.0%
GCATGCAGAGATAGGCCATG+AGG + chr1_3:5203871-5203890 Msa0099140:CDS 55.0%
! AGGAGTGGGGGGTGTAGAAG+TGG - chr1_3:5194859-5194878 None:intergenic 60.0%
TGAGGGAGAGGAAGGAGTGG+GGG - chr1_3:5194871-5194890 None:intergenic 60.0%
!! CGCGTGGTGGTTTGTTGTCG+AGG - chr1_3:5195015-5195034 None:intergenic 60.0%
GATAAGGCGGCGTTGTAGGG+TGG - chr1_3:5195040-5195059 None:intergenic 60.0%
GCTTCGGAGTTGAGGAGAGC+AGG + chr1_3:5195442-5195461 Msa0099140:CDS 60.0%
CTGTAGCTTCCAGGATGGGC+AGG + chr1_3:5196702-5196721 Msa0099140:intron 60.0%
CACACGTGAGCAGAGCAACG+TGG - chr1_3:5199263-5199282 None:intergenic 60.0%
CACGTTGCTCTGCTCACGTG+TGG + chr1_3:5199261-5199280 Msa0099140:intron 60.0%
GAGGGAGAGGAAGGAGTGGG+GGG - chr1_3:5194870-5194889 None:intergenic 65.0%
TTGTAGGGTGGTCCGCGTGG+TGG - chr1_3:5195028-5195047 None:intergenic 65.0%
! GGTGACGTCGCCGAAGCGTT+CGG - chr1_3:5195077-5195096 None:intergenic 65.0%
AGCGTGGCGGTTGGCGTAAG+CGG - chr1_3:5195107-5195126 None:intergenic 65.0%
GCGTTGTAGGGTGGTCCGCG+TGG - chr1_3:5195031-5195050 None:intergenic 70.0%
! GTCGCCGAAGCGTTCGGCGA+GGG - chr1_3:5195071-5195090 None:intergenic 70.0%
! CGTCGCCGAAGCGTTCGGCG+AGG - chr1_3:5195072-5195091 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 5190363 5204181 5190363 ID=Msa0099140;Name=Msa0099140
chr1_3 mRNA 5190363 5204181 5190363 ID=Msa0099140-mRNA-1;Parent=Msa0099140;Name=Msa0099140-mRNA-1;_AED=0.18;_eAED=0.23;_QI=0|0.19|0.14|1|0.30|0.29|27|268|1401
chr1_3 exon 5190363 5190591 5190363 ID=Msa0099140-mRNA-1:exon:1881;Parent=Msa0099140-mRNA-1
chr1_3 exon 5190619 5190852 5190619 ID=Msa0099140-mRNA-1:exon:1882;Parent=Msa0099140-mRNA-1
chr1_3 exon 5190877 5191014 5190877 ID=Msa0099140-mRNA-1:exon:1883;Parent=Msa0099140-mRNA-1
chr1_3 exon 5191108 5191259 5191108 ID=Msa0099140-mRNA-1:exon:1884;Parent=Msa0099140-mRNA-1
chr1_3 exon 5191678 5191836 5191678 ID=Msa0099140-mRNA-1:exon:1885;Parent=Msa0099140-mRNA-1
chr1_3 exon 5192059 5192297 5192059 ID=Msa0099140-mRNA-1:exon:1886;Parent=Msa0099140-mRNA-1
chr1_3 exon 5192736 5192826 5192736 ID=Msa0099140-mRNA-1:exon:1887;Parent=Msa0099140-mRNA-1
chr1_3 exon 5192916 5193092 5192916 ID=Msa0099140-mRNA-1:exon:1888;Parent=Msa0099140-mRNA-1
chr1_3 exon 5194829 5194952 5194829 ID=Msa0099140-mRNA-1:exon:1889;Parent=Msa0099140-mRNA-1
chr1_3 exon 5194996 5195225 5194996 ID=Msa0099140-mRNA-1:exon:1890;Parent=Msa0099140-mRNA-1
chr1_3 exon 5195274 5195465 5195274 ID=Msa0099140-mRNA-1:exon:1891;Parent=Msa0099140-mRNA-1
chr1_3 exon 5195478 5195696 5195478 ID=Msa0099140-mRNA-1:exon:1892;Parent=Msa0099140-mRNA-1
chr1_3 exon 5195712 5195905 5195712 ID=Msa0099140-mRNA-1:exon:1893;Parent=Msa0099140-mRNA-1
chr1_3 exon 5197285 5197300 5197285 ID=Msa0099140-mRNA-1:exon:1894;Parent=Msa0099140-mRNA-1
chr1_3 exon 5197348 5197449 5197348 ID=Msa0099140-mRNA-1:exon:1895;Parent=Msa0099140-mRNA-1
chr1_3 exon 5197587 5197652 5197587 ID=Msa0099140-mRNA-1:exon:1896;Parent=Msa0099140-mRNA-1
chr1_3 exon 5197940 5197997 5197940 ID=Msa0099140-mRNA-1:exon:1897;Parent=Msa0099140-mRNA-1
chr1_3 exon 5198190 5198286 5198190 ID=Msa0099140-mRNA-1:exon:1898;Parent=Msa0099140-mRNA-1
chr1_3 exon 5200204 5200325 5200204 ID=Msa0099140-mRNA-1:exon:1899;Parent=Msa0099140-mRNA-1
chr1_3 exon 5201433 5201630 5201433 ID=Msa0099140-mRNA-1:exon:1900;Parent=Msa0099140-mRNA-1
chr1_3 exon 5201658 5201891 5201658 ID=Msa0099140-mRNA-1:exon:1901;Parent=Msa0099140-mRNA-1
chr1_3 exon 5201943 5202132 5201943 ID=Msa0099140-mRNA-1:exon:1902;Parent=Msa0099140-mRNA-1
chr1_3 exon 5202160 5202292 5202160 ID=Msa0099140-mRNA-1:exon:1903;Parent=Msa0099140-mRNA-1
chr1_3 exon 5202733 5202891 5202733 ID=Msa0099140-mRNA-1:exon:1904;Parent=Msa0099140-mRNA-1
chr1_3 exon 5202995 5203236 5202995 ID=Msa0099140-mRNA-1:exon:1905;Parent=Msa0099140-mRNA-1
chr1_3 exon 5203619 5203625 5203619 ID=Msa0099140-mRNA-1:exon:1906;Parent=Msa0099140-mRNA-1
chr1_3 exon 5203710 5204181 5203710 ID=Msa0099140-mRNA-1:exon:1907;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5190363 5190591 5190363 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5190619 5190852 5190619 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5190877 5191014 5190877 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5191108 5191259 5191108 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5191678 5191836 5191678 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5192059 5192297 5192059 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5192736 5192826 5192736 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5192916 5193092 5192916 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5194829 5194952 5194829 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5194996 5195225 5194996 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5195274 5195465 5195274 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5195478 5195696 5195478 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5195712 5195905 5195712 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5197285 5197300 5197285 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5197348 5197449 5197348 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5197587 5197652 5197587 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5197940 5197997 5197940 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5198190 5198286 5198190 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5200204 5200325 5200204 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5201433 5201630 5201433 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5201658 5201891 5201658 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5201943 5202132 5201943 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5202160 5202292 5202160 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5202733 5202891 5202733 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5202995 5203236 5202995 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5203619 5203625 5203619 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 CDS 5203710 5203913 5203710 ID=Msa0099140-mRNA-1:cds;Parent=Msa0099140-mRNA-1
chr1_3 three_prime_UTR 5203914 5204181 5203914 ID=Msa0099140-mRNA-1:three_prime_utr;Parent=Msa0099140-mRNA-1
Gene Sequence

>Msa0099140

ATGATTAGTATTTATTTGGCTGTGACAGGACCAATGTACTATAAAGGTGTTTATCATTTATTCTACCAATATAACCCTGATGCAGCAACATTTGGTCATGAAAAAATGGTATGGGGTCATTCTGTATCAAATGATCTCATAAATTGGAAACATCTAAATGATGCTATTATACCAAGTGTGCCTAGTGACATAAACAGTTGTTGGTCAGGCTCAACCACTATACTCCCTGGAATTGATGAAAATAGACACCAAGTTCAAAATTTAGCCATGCCAAAGAATCTATCTGATCCTTACTTATGGGAATGGGAAAAACATCCTCAAAATCCTTTGATGACTCCACCTAGTGGAGTTGAAGTCGGTGAATTCAGAGACCCTTCAACTGCATGGCAAGGAAATGATGGAAAATGGAGGGTAATCATTGGTGCTCAAAATGGTGATGAAGGAAAAGTTATTCTTTATAAAATAGATCCTAATCCATTCTATGCAACAGATGATACTGGTGTTTGTGAATGTCCAGATTTTTTTCCTGTGTATATCAATAGCAATAATGGGGTTGATACAACTATGGAAAATTCAAGTGTTAGACATGTCTTGAAAATAAGAACCAGCAAAGACTTAAGATTTGACTATGGCCTATTTTATGCTTCAAAGTCATTTTTTGACTATGCTAAGAATAGGAGAATATTATGGCGATGGGTAGAAGAGGCTGACTCCGAACAAGATGGCATTGAAAGAGGATGGGCTGGTTTACAGACAATTCCAAGGATGTTTTGGCTTGATGAAAGTGGGGAGAGATTGATGCAGTGGCCAATTGAAGAGTTAGAAAAACTACGTGACAAGCAAATCAGTATCGCAGGAGAGACACTCCAAAGTGGATCAACTCTTGAAGTAAAAGGGATCACTGCATCTCAGGCTGATGTGGAAGTCTTGTTTGAGCTACCTGATCTAGAAAGTGCTGAGGTGCTAGAGCCAAGCGAAGTTGATCCTCAAGAACTCTGTAAAGAACAATATGCATCAAGAAAAGGAATGATAGGGCCATTTGGTTTGAAAGCTTTGGCATCAAAAGACCAATCAGAGAAGACTACAATATCTTTTCGGATATACAGAGTCGTGGATCATTATAAATGTTTGATGATAAGTGACCAGACCAGGTCTTCATTGAGGCAGGATCTTAAGAAACTCATATATGCAACTATCTTTGACATAGGTCCCGATCTCAAAACAATTTCACTCAGAAGCTTGATTGACCGGTCCATTATTGAGAGTTTTGGAGATGGAGGGAAAGCTGTGATAACAAATAGAGTGTATCCCTTATTGGCTATAGAGAAAGATGCACATCTTTATGTATTCAACAATGGAAGCCAAAGTGTGGTTATTTCACAACTGAATGCTTGGAGCATGAAACAAGCAGAGTTTGGACATGAATACTCTCTCCCTCCACACTCTCCACTTCTACACCCCCCACTCCTTCCTCTCCCTCAAACCAAAACCCCAACCTCGTATCCAATGCTGTTCCAACAACAACATAATCGACATCGACATGTCTGTGTCCTCTGGGACCTCGACAACAAACCACCACGCGGACCACCCTACAACGCCGCCTTATCTCTCAAATCCCTCGCCGAACGCTTCGGCGACGTCACCGACATCTCCGCTTACGCCAACCGCCACGCTTTCATTCATCTTCCTCAATGGGTTCTCAACCAACGCCGTGAACGTAAAAACCTCGACTTCCTCGAACGTAAAGGTATCATCAATCCACCTGAACCTTACAAACACTTTAAGCAGCTTCATCAACGTGAGAGACAGAAGAAGCTGAACCGTTTGAATTCTTTGAAGGGGAAGAAGAGGCAGAAGTATAAGGAGAGATATGTGAGTGGTGATGAGAAGTATAATGATGCTGTTAGGGAGATTTTGAAACCAAAAGTTGGGTATGGTTTGGCTTCGGAGTTGAGGAGAGCAGGGACTGTGGAGGATAAGCCTCAAGCTGCTGATTGGGCTTTGAAGAAGCAGATGATGCATTCTATGAGTAGAGGGATTGATTGGTTGTTTTTGGTTTCCGATGATTCCGATTTTAGTGAGATGTTGAGGAAGGCTAGAGAGGCTAATTTAGGGACTGTTGTTGTTGGGGATGTTGATAGGGCTTTAGGGAGGCATGCTGATTTGTGGGTGCCGTGGAATGCTGTTACGGATATGGATTTGGTTCCAAGGAATAGGGATAGAAGAAGAACATCAAGAACAACAACGACGACAACAATGGATGATTTTGGTGATGTGTTGTTTTTTCATGAGGGCGAGGAAATGGAAGAAGATTTTATGTTGGAGTATAGTGATGATGAGGATTCTGATGAGGATTCTGATGAAGAAGATGAAGATGGGACTACTACTTTGTTGATTTTATGGTTCGAAGTCATAAACTGGAGAATATTGTGGGCATGGATGAGCAAGTCTTTCACCAAACTAGATGACATCCAAAAAGGATGGGCTGATGTACAGGGCATGTTTGGCGATAAAAGAGGGAAGCAATTCTTACAGTGGCCAATTGAAGAGGTAGACAAACTAAGGATCTCGCAGAGTAGACTGCATTGTTTTTCAGAATATATAGAATTCCCAACAATAAAGTTTATCGTTCACTGGCAATTGACTATGATTCCCATCTTTATGCATTCAACAGTGGAAGAAGCAGGGTGTGATGATCTCAAAACTGAATACTTGGATAGAAATGGAATTGAGGCATCAACATATAGTAACAGTATTGATCCTATCAAGTACAGGATACCTAAAGAACAACCTTACAAAACTTCTTATCATTTTCAGCCCCCACAAAATTGGATGAACGCCCCTATGTACTACAAAGGTGTATACCACCTTTTCTACCAACATAATCCACTTGCAGCAACATTTGGTGATATAATTGTATGGGCTCATTCTGTGTCCTATGATCTCATTAATTGGATTCATCTCAACATTGCTCTTGAACCAAGTGGACCTTATGACATCAACAGTTGTTGGTCAGGTTCAGCCACTATACTCCCAGGAATTGATCACAATAAGAATGAAGTTCAGAACTTAGCTATACCAAAGAATCTAACCGACGCTTTCTTAAGGGAATGGGAAAAACACCCTCAAAATCCTGTGATGACTCCACCTAGTGGAGTTGAAGAGGATAACTTTAGAGACCCTTCAACTGCATGGCATGGAAAAGATGGAAAATGGAGGGTAATTGTCGGTGCTCAAAATGGTGATGAAGGGAAAACCATTCTTTATCAAAATAATACTGGAGTTTGTGAATGTCCAGACTTTTTTCCTGTGTATATCAATAGTACTAATGGGGTGGATACATCTGTGGATAATTCAAGTGTTAGGCATGTTTTGAAGATAAGCTATCTAAGAAAACAGCATGACTACTATTTTCTTGGTAAATATGTTTCTGATAAGGAAAACTTTGTTCCTGATGTAGAGTTTGACTATGGTAAATTTTATGCTTCAAAATCATTTTTTGACTATGCTAAGAATAGGAGAATATTGTGGGGTTGGGTGAATGAGTCTGACTCTACGCAAGATGATATAGAGAAAGGATGGGCAGGTTTACAGACAATTCCAAGGCAAGTTTGGCTTGATAAAAGTGGGAAGAGATTGATACAGTGGCCAATTGAAGAGGTAGAAAAACTAAGAGACAAACAGATCAATATTACAGGAGAGAAACTTGAGGGTGGCTCAACTCTTGAAATCTCAGGCATCAATGCATCACAGGTTGATGTAGAAGTGTTGTTTGAGCTACCTAAGCTAGAAAGTGGTGAGTGGTTAGAAGATCCAAGTGAAGTTGATCCTCAACTATTATGTAGCAAACAATATGCATCAAGAAGTGGCAAAATAGGACCATTTGGTTTGTTAGCTTTAGCTTCAAAGGATTTGACAGAGCAAACAGCAGTGTCTTTCCAAATATTTAGAGCTTCAAATAGATATTTATGTCTGATGTGCAGTGACCAAAGCAGAAGCTTGATTGACAAGTCCATTATTGAGAGTTTTGGAGATGGAGGTAAAGTTGTGATAACAAGTAGAGTGTATCCTTTATTGGCTATAGAGAAAGATGCACATCTTTATGTATTCAACAATGGAAGTCAGAGTGTGGTTATCTCAAAACTGAATGCTTGGAGCATGAAGCATGCAGAGATAGGCCATGAGGGAAATACAGATTGTGCTTAA
Protein sequence

>Msa0099140

MISIYLAVTGPMYYKGVYHLFYQYNPDAATFGHEKMVWGHSVSNDLINWKHLNDAIIPSVPSDINSCWSGSTTILPGIDENRHQVQNLAMPKNLSDPYLWEWEKHPQNPLMTPPSGVEVGEFRDPSTAWQGNDGKWRVIIGAQNGDEGKVILYKIDPNPFYATDDTGVCECPDFFPVYINSNNGVDTTMENSSVRHVLKIRTSKDLRFDYGLFYASKSFFDYAKNRRILWRWVEEADSEQDGIERGWAGLQTIPRMFWLDESGERLMQWPIEELEKLRDKQISIAGETLQSGSTLEVKGITASQADVEVLFELPDLESAEVLEPSEVDPQELCKEQYASRKGMIGPFGLKALASKDQSEKTTISFRIYRVVDHYKCLMISDQTRSSLRQDLKKLIYATIFDIGPDLKTISLRSLIDRSIIESFGDGGKAVITNRVYPLLAIEKDAHLYVFNNGSQSVVISQLNAWSMKQAEFGHEYSLPPHSPLLHPPLLPLPQTKTPTSYPMLFQQQHNRHRHVCVLWDLDNKPPRGPPYNAALSLKSLAERFGDVTDISAYANRHAFIHLPQWVLNQRRERKNLDFLERKGIINPPEPYKHFKQLHQRERQKKLNRLNSLKGKKRQKYKERYVSGDEKYNDAVREILKPKVGYGLASELRRAGTVEDKPQAADWALKKQMMHSMSRGIDWLFLVSDDSDFSEMLRKAREANLGTVVVGDVDRALGRHADLWVPWNAVTDMDLVPRNRDRRRTSRTTTTTTMDDFGDVLFFHEGEEMEEDFMLEYSDDEDSDEDSDEEDEDGTTTLLILWFEVINWRILWAWMSKSFTKLDDIQKGWADVQGMFGDKRGKQFLQWPIEEVDKLRISQSRLHCFSEYIEFPTIKFIVHWQLTMIPIFMHSTVEEAGCDDLKTEYLDRNGIEASTYSNSIDPIKYRIPKEQPYKTSYHFQPPQNWMNAPMYYKGVYHLFYQHNPLAATFGDIIVWAHSVSYDLINWIHLNIALEPSGPYDINSCWSGSATILPGIDHNKNEVQNLAIPKNLTDAFLREWEKHPQNPVMTPPSGVEEDNFRDPSTAWHGKDGKWRVIVGAQNGDEGKTILYQNNTGVCECPDFFPVYINSTNGVDTSVDNSSVRHVLKISYLRKQHDYYFLGKYVSDKENFVPDVEFDYGKFYASKSFFDYAKNRRILWGWVNESDSTQDDIEKGWAGLQTIPRQVWLDKSGKRLIQWPIEEVEKLRDKQINITGEKLEGGSTLEISGINASQVDVEVLFELPKLESGEWLEDPSEVDPQLLCSKQYASRSGKIGPFGLLALASKDLTEQTAVSFQIFRASNRYLCLMCSDQSRSLIDKSIIESFGDGGKVVITSRVYPLLAIEKDAHLYVFNNGSQSVVISKLNAWSMKHAEIGHEGNTDCA*