AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0309670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0309670 MtrunA17_Chr2g0278261 94.581 203 11 0 1 203 1 203 5.26e-142 396
Msa0309670 MtrunA17_Chr2g0278051 60.645 155 58 2 49 203 47 198 3.29e-61 191
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0309670 AT3G26070.1 54.037 161 70 3 46 203 38 197 1.18e-52 170
Msa0309670 AT3G26080.1 57.463 134 55 2 70 203 57 188 2.57e-47 156
Msa0309670 AT3G26080.2 57.463 134 55 2 70 203 57 188 4.74e-47 156

Find 52 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCAACTCTGATTTGCTTAA+TGG 0.077313 2_4:+4309152 Msa0309670:CDS
TTTCATAGAGCTCAACTTTA+AGG 0.109395 2_4:-4308899 None:intergenic
CTGATTTGCTTAATGGAAAA+TGG 0.115595 2_4:+4309159 Msa0309670:CDS
CCATTTGGTCGCAGGAATTT+TGG 0.196629 2_4:-4309595 None:intergenic
CTTCTTCAAAATCGCTAGTT+TGG 0.313574 2_4:+4310064 Msa0309670:CDS
ATGTTGGTGGTGTTGAATTT+TGG 0.338770 2_4:-4308774 None:intergenic
GTTAAAAGACTATGGCAAAT+AGG 0.342674 2_4:-4310127 None:intergenic
CGAGTTGAGTGGCACTATAT+TGG 0.347623 2_4:-4310018 None:intergenic
TAGCTGCTGATTCTGCAAAA+TGG 0.365601 2_4:+4308814 Msa0309670:CDS
GATCATATGTTAAAAGACTA+TGG 0.369766 2_4:-4310135 None:intergenic
TGTTGTACCTGGTTGTAAAA+TGG 0.397757 2_4:-4309676 None:intergenic
TGGCAGAGTAGAAGTGGGAG+TGG 0.417431 2_4:-4308691 None:intergenic
GCCTGGTAGATCTTTCCATT+TGG 0.421158 2_4:-4309610 None:intergenic
TGATTTGCTTAATGGAAAAT+GGG 0.423724 2_4:+4309160 Msa0309670:CDS
TCCACACGTTGTTGGTCCTC+AGG 0.437483 2_4:-4308957 None:intergenic
CCAAAATTCCTGCGACCAAA+TGG 0.438668 2_4:+4309595 Msa0309670:CDS
TAACCTTGTCCACACGTTGT+TGG 0.440005 2_4:-4308965 None:intergenic
CGAGGCTATGAACTCTGTTA+AGG 0.445706 2_4:+4309124 Msa0309670:CDS
GAAGATTTGGTTGTGAAGGA+TGG 0.468096 2_4:-4308734 None:intergenic
GAAAATTGAAAAGTAAATAC+AGG 0.477533 2_4:-4310096 None:intergenic
GAATCAATTATACATTTGAA+TGG 0.483996 2_4:-4308711 None:intergenic
GAATCAGCAGCTACTGATGA+TGG 0.500537 2_4:-4308804 None:intergenic
ATGTATCCGTGTTAATTGCC+TGG 0.506754 2_4:-4309627 None:intergenic
AGATCTTTCCATTTGGTCGC+AGG 0.508870 2_4:-4309603 None:intergenic
TTCCTCCAGTTAGAAAACCT+TGG 0.517994 2_4:-4308857 None:intergenic
CAGGAGTAGCCTCAGCGCCT+CGG 0.518740 2_4:-4308938 None:intergenic
AAGATTTGGTTGTGAAGGAT+GGG 0.520551 2_4:-4308733 None:intergenic
GCCTCAGCGCCTCGGTCAAG+TGG 0.522361 2_4:-4308930 None:intergenic
GAGCTCAAAATATAGAAACT+TGG 0.545026 2_4:+4309653 Msa0309670:CDS
TTTGAATGGCAGAGTAGAAG+TGG 0.547151 2_4:-4308697 None:intergenic
AGCATGGTTTCAATCTTCCA+AGG 0.568764 2_4:+4308840 Msa0309670:CDS
TAGTGCCACTCAACTCGAGA+AGG 0.572894 2_4:+4310024 Msa0309670:CDS
GAGTGGCACTATATTGGCAG+TGG 0.580377 2_4:-4310012 None:intergenic
TCCTGAGGACCAACAACGTG+TGG 0.586912 2_4:+4308956 Msa0309670:CDS
TTCTGCAAAATGGAGGAGCA+TGG 0.595533 2_4:+4308824 Msa0309670:CDS
GGACCAACAACGTGTGGACA+AGG 0.602478 2_4:+4308962 Msa0309670:CDS
TGATGATGGTAATATGATGT+TGG 0.604952 2_4:-4308790 None:intergenic
AAAGGAAGATTTGGTTGTGA+AGG 0.609629 2_4:-4308738 None:intergenic
TGATGGTAATATGATGTTGG+TGG 0.609634 2_4:-4308787 None:intergenic
TCTAACTGGAGGAAGAGGAA+AGG 0.618212 2_4:+4308866 Msa0309670:CDS
ACCACTTGACCGAGGCGCTG+AGG 0.623788 2_4:+4308929 Msa0309670:CDS
AGTGCCACTCAACTCGAGAA+GGG 0.627232 2_4:+4310025 Msa0309670:CDS
AGGCGCTGAGGCTACTCCTG+AGG 0.628313 2_4:+4308941 Msa0309670:CDS
GCCACCCTTCTCGAGTTGAG+TGG 0.635500 2_4:-4310029 None:intergenic
CTGCTGATTCTGCAAAATGG+AGG 0.641823 2_4:+4308817 Msa0309670:CDS
TTGAATGGCAGAGTAGAAGT+GGG 0.655278 2_4:-4308696 None:intergenic
CTAGATTGCTCGTAAACTCG+AGG 0.657753 2_4:+4309106 Msa0309670:intron
GCCACTCAACTCGAGAAGGG+TGG 0.660806 2_4:+4310028 Msa0309670:CDS
GATCTACCAGGCAATTAACA+CGG 0.666229 2_4:+4309621 Msa0309670:CDS
ACCAAATGGAAAGATCTACC+AGG 0.666458 2_4:+4309609 Msa0309670:CDS
TTAAGCAAATCAGAGTTGAG+AGG 0.680159 2_4:-4309149 None:intergenic
ACAATTGCACCACTTGACCG+AGG 0.697302 2_4:+4308921 Msa0309670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATCAATTATACATTTGAA+TGG - chr2_4:4308714-4308733 None:intergenic 20.0%
!!! CAAATTTTCCATAATTATGT+TGG - chr2_4:4309347-4309366 None:intergenic 20.0%
!!! AAAATTTGATGATTTAGAGT+TGG + chr2_4:4309359-4309378 Msa0309670:intron 20.0%
!!! AAATTTGATGATTTAGAGTT+GGG + chr2_4:4309360-4309379 Msa0309670:intron 20.0%
!! AATTAATCATCACTTTACAA+GGG - chr2_4:4309554-4309573 None:intergenic 20.0%
!! AATCTATGTAGTTGAAATAT+TGG + chr2_4:4309738-4309757 Msa0309670:intron 20.0%
!!! ATTATCGAAAAGCTTTAAAA+TGG - chr2_4:4309914-4309933 None:intergenic 20.0%
!!! TTTTAAAGCTTTTCGATAAT+AGG + chr2_4:4309914-4309933 Msa0309670:intron 20.0%
!! GAAAATTGAAAAGTAAATAC+AGG - chr2_4:4310099-4310118 None:intergenic 20.0%
!! GAATCAATTATACATTTGAA+TGG - chr2_4:4308714-4308733 None:intergenic 20.0%
!!! CAAATTTTCCATAATTATGT+TGG - chr2_4:4309347-4309366 None:intergenic 20.0%
!!! AAAATTTGATGATTTAGAGT+TGG + chr2_4:4309359-4309378 Msa0309670:intron 20.0%
!!! AAATTTGATGATTTAGAGTT+GGG + chr2_4:4309360-4309379 Msa0309670:intron 20.0%
!! AATTAATCATCACTTTACAA+GGG - chr2_4:4309554-4309573 None:intergenic 20.0%
!! AATCTATGTAGTTGAAATAT+TGG + chr2_4:4309738-4309757 Msa0309670:intron 20.0%
!!! ATTATCGAAAAGCTTTAAAA+TGG - chr2_4:4309914-4309933 None:intergenic 20.0%
!!! TTTTAAAGCTTTTCGATAAT+AGG + chr2_4:4309914-4309933 Msa0309670:intron 20.0%
!! GAAAATTGAAAAGTAAATAC+AGG - chr2_4:4310099-4310118 None:intergenic 20.0%
! TGTTACATGCATAATAGTTT+AGG + chr2_4:4309015-4309034 Msa0309670:intron 25.0%
!! ATGCATAATAGTTTAGGTTT+GGG + chr2_4:4309021-4309040 Msa0309670:intron 25.0%
! CATAAAATCAATCACAAACT+AGG - chr2_4:4309076-4309095 None:intergenic 25.0%
!!! AGTTTGTGATTGATTTTATG+TGG + chr2_4:4309076-4309095 Msa0309670:intron 25.0%
!!! TGATTTGCTTAATGGAAAAT+GGG + chr2_4:4309160-4309179 Msa0309670:CDS 25.0%
! ATGACTTACCAACATAATTA+TGG + chr2_4:4309336-4309355 Msa0309670:intron 25.0%
! CAATTAATCATCACTTTACA+AGG - chr2_4:4309555-4309574 None:intergenic 25.0%
! TAAACAAACACTTAAACCAA+TGG - chr2_4:4309709-4309728 None:intergenic 25.0%
! AGACTATATAATTAACACGT+AGG - chr2_4:4309942-4309961 None:intergenic 25.0%
! CAACAATAGTGAAAATTTGA+GGG - chr2_4:4309988-4310007 None:intergenic 25.0%
! TGTTACATGCATAATAGTTT+AGG + chr2_4:4309015-4309034 Msa0309670:intron 25.0%
!! ATGCATAATAGTTTAGGTTT+GGG + chr2_4:4309021-4309040 Msa0309670:intron 25.0%
! CATAAAATCAATCACAAACT+AGG - chr2_4:4309076-4309095 None:intergenic 25.0%
!!! AGTTTGTGATTGATTTTATG+TGG + chr2_4:4309076-4309095 Msa0309670:intron 25.0%
!!! TGATTTGCTTAATGGAAAAT+GGG + chr2_4:4309160-4309179 Msa0309670:CDS 25.0%
! ATGACTTACCAACATAATTA+TGG + chr2_4:4309336-4309355 Msa0309670:intron 25.0%
! CAATTAATCATCACTTTACA+AGG - chr2_4:4309555-4309574 None:intergenic 25.0%
! TAAACAAACACTTAAACCAA+TGG - chr2_4:4309709-4309728 None:intergenic 25.0%
! AGACTATATAATTAACACGT+AGG - chr2_4:4309942-4309961 None:intergenic 25.0%
! CAACAATAGTGAAAATTTGA+GGG - chr2_4:4309988-4310007 None:intergenic 25.0%
!! TGATGATGGTAATATGATGT+TGG - chr2_4:4308793-4308812 None:intergenic 30.0%
TTTCATAGAGCTCAACTTTA+AGG - chr2_4:4308902-4308921 None:intergenic 30.0%
! CATGCATAATAGTTTAGGTT+TGG + chr2_4:4309020-4309039 Msa0309670:intron 30.0%
!! CTGATTTGCTTAATGGAAAA+TGG + chr2_4:4309159-4309178 Msa0309670:CDS 30.0%
! TCAATCAATTTTGCAAACAC+AGG + chr2_4:4309202-4309221 Msa0309670:CDS 30.0%
CTGATAAACTGTAATGCATT+AGG - chr2_4:4309262-4309281 None:intergenic 30.0%
TGCATTACAGTTTATCAGAA+AGG + chr2_4:4309264-4309283 Msa0309670:intron 30.0%
GCATTACAGTTTATCAGAAA+GGG + chr2_4:4309265-4309284 Msa0309670:intron 30.0%
CATTACAGTTTATCAGAAAG+GGG + chr2_4:4309266-4309285 Msa0309670:intron 30.0%
GAGCTCAAAATATAGAAACT+TGG + chr2_4:4309653-4309672 Msa0309670:CDS 30.0%
TTGAAGAATTCAAGAAACCT+TGG + chr2_4:4309797-4309816 Msa0309670:intron 30.0%
TGAAGAATTCAAGAAACCTT+GGG + chr2_4:4309798-4309817 Msa0309670:intron 30.0%
!! TTTTGCTACTTACTTTTGCA+TGG - chr2_4:4309885-4309904 None:intergenic 30.0%
GCAACAATAGTGAAAATTTG+AGG - chr2_4:4309989-4310008 None:intergenic 30.0%
! CAAATTTTCACTATTGTTGC+AGG + chr2_4:4309989-4310008 Msa0309670:intron 30.0%
!! TGATGATGGTAATATGATGT+TGG - chr2_4:4308793-4308812 None:intergenic 30.0%
TTTCATAGAGCTCAACTTTA+AGG - chr2_4:4308902-4308921 None:intergenic 30.0%
! CATGCATAATAGTTTAGGTT+TGG + chr2_4:4309020-4309039 Msa0309670:intron 30.0%
!! CTGATTTGCTTAATGGAAAA+TGG + chr2_4:4309159-4309178 Msa0309670:CDS 30.0%
! TCAATCAATTTTGCAAACAC+AGG + chr2_4:4309202-4309221 Msa0309670:CDS 30.0%
CTGATAAACTGTAATGCATT+AGG - chr2_4:4309262-4309281 None:intergenic 30.0%
TGCATTACAGTTTATCAGAA+AGG + chr2_4:4309264-4309283 Msa0309670:intron 30.0%
GCATTACAGTTTATCAGAAA+GGG + chr2_4:4309265-4309284 Msa0309670:intron 30.0%
CATTACAGTTTATCAGAAAG+GGG + chr2_4:4309266-4309285 Msa0309670:intron 30.0%
GAGCTCAAAATATAGAAACT+TGG + chr2_4:4309653-4309672 Msa0309670:CDS 30.0%
TTGAAGAATTCAAGAAACCT+TGG + chr2_4:4309797-4309816 Msa0309670:intron 30.0%
TGAAGAATTCAAGAAACCTT+GGG + chr2_4:4309798-4309817 Msa0309670:intron 30.0%
!! TTTTGCTACTTACTTTTGCA+TGG - chr2_4:4309885-4309904 None:intergenic 30.0%
GCAACAATAGTGAAAATTTG+AGG - chr2_4:4309989-4310008 None:intergenic 30.0%
! CAAATTTTCACTATTGTTGC+AGG + chr2_4:4309989-4310008 Msa0309670:intron 30.0%
! AAGATTTGGTTGTGAAGGAT+GGG - chr2_4:4308736-4308755 None:intergenic 35.0%
! AAAGGAAGATTTGGTTGTGA+AGG - chr2_4:4308741-4308760 None:intergenic 35.0%
!!! ATGTTGGTGGTGTTGAATTT+TGG - chr2_4:4308777-4308796 None:intergenic 35.0%
TGATGGTAATATGATGTTGG+TGG - chr2_4:4308790-4308809 None:intergenic 35.0%
! ATCTTCCAAGGTTTTCTAAC+TGG + chr2_4:4308852-4308871 Msa0309670:CDS 35.0%
! CATAATAGTTTAGGTTTGGG+TGG + chr2_4:4309024-4309043 Msa0309670:intron 35.0%
TTAAGCAAATCAGAGTTGAG+AGG - chr2_4:4309152-4309171 None:intergenic 35.0%
!! CTCAACTCTGATTTGCTTAA+TGG + chr2_4:4309152-4309171 Msa0309670:CDS 35.0%
AACTGTAATGCATTAGGATC+TGG - chr2_4:4309256-4309275 None:intergenic 35.0%
! AGGGGTCAAATTGACTATTT+TGG + chr2_4:4309284-4309303 Msa0309670:intron 35.0%
TGTTGTACCTGGTTGTAAAA+TGG - chr2_4:4309679-4309698 None:intergenic 35.0%
GAAGAATTCAAGAAACCTTG+GGG + chr2_4:4309799-4309818 Msa0309670:intron 35.0%
CTTCTTCAAAATCGCTAGTT+TGG + chr2_4:4310064-4310083 Msa0309670:CDS 35.0%
! AAGATTTGGTTGTGAAGGAT+GGG - chr2_4:4308736-4308755 None:intergenic 35.0%
! AAAGGAAGATTTGGTTGTGA+AGG - chr2_4:4308741-4308760 None:intergenic 35.0%
!!! ATGTTGGTGGTGTTGAATTT+TGG - chr2_4:4308777-4308796 None:intergenic 35.0%
TGATGGTAATATGATGTTGG+TGG - chr2_4:4308790-4308809 None:intergenic 35.0%
! ATCTTCCAAGGTTTTCTAAC+TGG + chr2_4:4308852-4308871 Msa0309670:CDS 35.0%
! CATAATAGTTTAGGTTTGGG+TGG + chr2_4:4309024-4309043 Msa0309670:intron 35.0%
TTAAGCAAATCAGAGTTGAG+AGG - chr2_4:4309152-4309171 None:intergenic 35.0%
!! CTCAACTCTGATTTGCTTAA+TGG + chr2_4:4309152-4309171 Msa0309670:CDS 35.0%
AACTGTAATGCATTAGGATC+TGG - chr2_4:4309256-4309275 None:intergenic 35.0%
! AGGGGTCAAATTGACTATTT+TGG + chr2_4:4309284-4309303 Msa0309670:intron 35.0%
TGTTGTACCTGGTTGTAAAA+TGG - chr2_4:4309679-4309698 None:intergenic 35.0%
GAAGAATTCAAGAAACCTTG+GGG + chr2_4:4309799-4309818 Msa0309670:intron 35.0%
CTTCTTCAAAATCGCTAGTT+TGG + chr2_4:4310064-4310083 Msa0309670:CDS 35.0%
TTGAATGGCAGAGTAGAAGT+GGG - chr2_4:4308699-4308718 None:intergenic 40.0%
TTTGAATGGCAGAGTAGAAG+TGG - chr2_4:4308700-4308719 None:intergenic 40.0%
! GAAGATTTGGTTGTGAAGGA+TGG - chr2_4:4308737-4308756 None:intergenic 40.0%
!! TGGTGTTGAATTTTGGTCGT+GGG - chr2_4:4308770-4308789 None:intergenic 40.0%
!! TAGCTGCTGATTCTGCAAAA+TGG + chr2_4:4308814-4308833 Msa0309670:CDS 40.0%
AGCATGGTTTCAATCTTCCA+AGG + chr2_4:4308840-4308859 Msa0309670:CDS 40.0%
! TTCCAAGGTTTTCTAACTGG+AGG + chr2_4:4308855-4308874 Msa0309670:CDS 40.0%
TTCCTCCAGTTAGAAAACCT+TGG - chr2_4:4308860-4308879 None:intergenic 40.0%
GTTTACGAGCAATCTAGACA+AGG - chr2_4:4309103-4309122 None:intergenic 40.0%
CTGTCTTGCTCATTATTGAC+AGG - chr2_4:4309398-4309417 None:intergenic 40.0%
ACCAAATGGAAAGATCTACC+AGG + chr2_4:4309609-4309628 Msa0309670:CDS 40.0%
GATCTACCAGGCAATTAACA+CGG + chr2_4:4309621-4309640 Msa0309670:CDS 40.0%
ATGTATCCGTGTTAATTGCC+TGG - chr2_4:4309630-4309649 None:intergenic 40.0%
!! AACTTGGCCATTTTACAACC+AGG + chr2_4:4309669-4309688 Msa0309670:CDS 40.0%
AATTCAAGAAACCTTGGGGT+TGG + chr2_4:4309803-4309822 Msa0309670:intron 40.0%
TTGAATGGCAGAGTAGAAGT+GGG - chr2_4:4308699-4308718 None:intergenic 40.0%
TTTGAATGGCAGAGTAGAAG+TGG - chr2_4:4308700-4308719 None:intergenic 40.0%
! GAAGATTTGGTTGTGAAGGA+TGG - chr2_4:4308737-4308756 None:intergenic 40.0%
!! TGGTGTTGAATTTTGGTCGT+GGG - chr2_4:4308770-4308789 None:intergenic 40.0%
!! TAGCTGCTGATTCTGCAAAA+TGG + chr2_4:4308814-4308833 Msa0309670:CDS 40.0%
AGCATGGTTTCAATCTTCCA+AGG + chr2_4:4308840-4308859 Msa0309670:CDS 40.0%
! TTCCAAGGTTTTCTAACTGG+AGG + chr2_4:4308855-4308874 Msa0309670:CDS 40.0%
TTCCTCCAGTTAGAAAACCT+TGG - chr2_4:4308860-4308879 None:intergenic 40.0%
GTTTACGAGCAATCTAGACA+AGG - chr2_4:4309103-4309122 None:intergenic 40.0%
CTGTCTTGCTCATTATTGAC+AGG - chr2_4:4309398-4309417 None:intergenic 40.0%
ACCAAATGGAAAGATCTACC+AGG + chr2_4:4309609-4309628 Msa0309670:CDS 40.0%
GATCTACCAGGCAATTAACA+CGG + chr2_4:4309621-4309640 Msa0309670:CDS 40.0%
ATGTATCCGTGTTAATTGCC+TGG - chr2_4:4309630-4309649 None:intergenic 40.0%
!! AACTTGGCCATTTTACAACC+AGG + chr2_4:4309669-4309688 Msa0309670:CDS 40.0%
AATTCAAGAAACCTTGGGGT+TGG + chr2_4:4309803-4309822 Msa0309670:intron 40.0%
!! GTGTTGAATTTTGGTCGTGG+GGG - chr2_4:4308768-4308787 None:intergenic 45.0%
!! GGTGTTGAATTTTGGTCGTG+GGG - chr2_4:4308769-4308788 None:intergenic 45.0%
!! GTGGTGTTGAATTTTGGTCG+TGG - chr2_4:4308771-4308790 None:intergenic 45.0%
GAATCAGCAGCTACTGATGA+TGG - chr2_4:4308807-4308826 None:intergenic 45.0%
!! CTGCTGATTCTGCAAAATGG+AGG + chr2_4:4308817-4308836 Msa0309670:CDS 45.0%
TTCTGCAAAATGGAGGAGCA+TGG + chr2_4:4308824-4308843 Msa0309670:CDS 45.0%
! GGTTTTCTAACTGGAGGAAG+AGG + chr2_4:4308861-4308880 Msa0309670:CDS 45.0%
TCTAACTGGAGGAAGAGGAA+AGG + chr2_4:4308866-4308885 Msa0309670:CDS 45.0%
TAACCTTGTCCACACGTTGT+TGG - chr2_4:4308968-4308987 None:intergenic 45.0%
CTAGATTGCTCGTAAACTCG+AGG + chr2_4:4309106-4309125 Msa0309670:intron 45.0%
CGAGGCTATGAACTCTGTTA+AGG + chr2_4:4309124-4309143 Msa0309670:CDS 45.0%
!! CAGGTTTGTCTCTAGAGTAG+AGG + chr2_4:4309221-4309240 Msa0309670:intron 45.0%
!! TCGCAGGAATTTTGGTCTCT+AGG - chr2_4:4309590-4309609 None:intergenic 45.0%
! CCATTTGGTCGCAGGAATTT+TGG - chr2_4:4309598-4309617 None:intergenic 45.0%
CCAAAATTCCTGCGACCAAA+TGG + chr2_4:4309595-4309614 Msa0309670:CDS 45.0%
AGATCTTTCCATTTGGTCGC+AGG - chr2_4:4309606-4309625 None:intergenic 45.0%
GCCTGGTAGATCTTTCCATT+TGG - chr2_4:4309613-4309632 None:intergenic 45.0%
ATGGTCAGAACTGTTGTACC+TGG - chr2_4:4309690-4309709 None:intergenic 45.0%
! GGTACAACAGTTCTGACCAT+TGG + chr2_4:4309690-4309709 Msa0309670:intron 45.0%
! CGAGTTGAGTGGCACTATAT+TGG - chr2_4:4310021-4310040 None:intergenic 45.0%
!! GTGTTGAATTTTGGTCGTGG+GGG - chr2_4:4308768-4308787 None:intergenic 45.0%
!! GGTGTTGAATTTTGGTCGTG+GGG - chr2_4:4308769-4308788 None:intergenic 45.0%
!! GTGGTGTTGAATTTTGGTCG+TGG - chr2_4:4308771-4308790 None:intergenic 45.0%
GAATCAGCAGCTACTGATGA+TGG - chr2_4:4308807-4308826 None:intergenic 45.0%
!! CTGCTGATTCTGCAAAATGG+AGG + chr2_4:4308817-4308836 Msa0309670:CDS 45.0%
TTCTGCAAAATGGAGGAGCA+TGG + chr2_4:4308824-4308843 Msa0309670:CDS 45.0%
! GGTTTTCTAACTGGAGGAAG+AGG + chr2_4:4308861-4308880 Msa0309670:CDS 45.0%
TCTAACTGGAGGAAGAGGAA+AGG + chr2_4:4308866-4308885 Msa0309670:CDS 45.0%
TAACCTTGTCCACACGTTGT+TGG - chr2_4:4308968-4308987 None:intergenic 45.0%
CTAGATTGCTCGTAAACTCG+AGG + chr2_4:4309106-4309125 Msa0309670:intron 45.0%
CGAGGCTATGAACTCTGTTA+AGG + chr2_4:4309124-4309143 Msa0309670:CDS 45.0%
!! CAGGTTTGTCTCTAGAGTAG+AGG + chr2_4:4309221-4309240 Msa0309670:intron 45.0%
!! TCGCAGGAATTTTGGTCTCT+AGG - chr2_4:4309590-4309609 None:intergenic 45.0%
! CCATTTGGTCGCAGGAATTT+TGG - chr2_4:4309598-4309617 None:intergenic 45.0%
CCAAAATTCCTGCGACCAAA+TGG + chr2_4:4309595-4309614 Msa0309670:CDS 45.0%
AGATCTTTCCATTTGGTCGC+AGG - chr2_4:4309606-4309625 None:intergenic 45.0%
GCCTGGTAGATCTTTCCATT+TGG - chr2_4:4309613-4309632 None:intergenic 45.0%
ATGGTCAGAACTGTTGTACC+TGG - chr2_4:4309690-4309709 None:intergenic 45.0%
! GGTACAACAGTTCTGACCAT+TGG + chr2_4:4309690-4309709 Msa0309670:intron 45.0%
! CGAGTTGAGTGGCACTATAT+TGG - chr2_4:4310021-4310040 None:intergenic 45.0%
! GGGGGTGCAAAAGGAAGATT+TGG - chr2_4:4308750-4308769 None:intergenic 50.0%
ACAATTGCACCACTTGACCG+AGG + chr2_4:4308921-4308940 Msa0309670:CDS 50.0%
TCAAGAAACCTTGGGGTTGG+CGG + chr2_4:4309806-4309825 Msa0309670:intron 50.0%
ATTAAAACCCGCCAACCCCA+AGG - chr2_4:4309817-4309836 None:intergenic 50.0%
GAGTGGCACTATATTGGCAG+TGG - chr2_4:4310015-4310034 None:intergenic 50.0%
! TAGTGCCACTCAACTCGAGA+AGG + chr2_4:4310024-4310043 Msa0309670:CDS 50.0%
! AGTGCCACTCAACTCGAGAA+GGG + chr2_4:4310025-4310044 Msa0309670:CDS 50.0%
! GGGGGTGCAAAAGGAAGATT+TGG - chr2_4:4308750-4308769 None:intergenic 50.0%
ACAATTGCACCACTTGACCG+AGG + chr2_4:4308921-4308940 Msa0309670:CDS 50.0%
TCAAGAAACCTTGGGGTTGG+CGG + chr2_4:4309806-4309825 Msa0309670:intron 50.0%
ATTAAAACCCGCCAACCCCA+AGG - chr2_4:4309817-4309836 None:intergenic 50.0%
GAGTGGCACTATATTGGCAG+TGG - chr2_4:4310015-4310034 None:intergenic 50.0%
! TAGTGCCACTCAACTCGAGA+AGG + chr2_4:4310024-4310043 Msa0309670:CDS 50.0%
! AGTGCCACTCAACTCGAGAA+GGG + chr2_4:4310025-4310044 Msa0309670:CDS 50.0%
TGGCAGAGTAGAAGTGGGAG+TGG - chr2_4:4308694-4308713 None:intergenic 55.0%
! TTTGGTCGTGGGGGTGCAAA+AGG - chr2_4:4308759-4308778 None:intergenic 55.0%
TCCTGAGGACCAACAACGTG+TGG + chr2_4:4308956-4308975 Msa0309670:CDS 55.0%
TCCACACGTTGTTGGTCCTC+AGG - chr2_4:4308960-4308979 None:intergenic 55.0%
GGACCAACAACGTGTGGACA+AGG + chr2_4:4308962-4308981 Msa0309670:CDS 55.0%
! CAAGAAACCTTGGGGTTGGC+GGG + chr2_4:4309807-4309826 Msa0309670:intron 55.0%
TGGCAGAGTAGAAGTGGGAG+TGG - chr2_4:4308694-4308713 None:intergenic 55.0%
! TTTGGTCGTGGGGGTGCAAA+AGG - chr2_4:4308759-4308778 None:intergenic 55.0%
TCCTGAGGACCAACAACGTG+TGG + chr2_4:4308956-4308975 Msa0309670:CDS 55.0%
TCCACACGTTGTTGGTCCTC+AGG - chr2_4:4308960-4308979 None:intergenic 55.0%
GGACCAACAACGTGTGGACA+AGG + chr2_4:4308962-4308981 Msa0309670:CDS 55.0%
! CAAGAAACCTTGGGGTTGGC+GGG + chr2_4:4309807-4309826 Msa0309670:intron 55.0%
GCCACTCAACTCGAGAAGGG+TGG + chr2_4:4310028-4310047 Msa0309670:CDS 60.0%
!! GCCACCCTTCTCGAGTTGAG+TGG - chr2_4:4310032-4310051 None:intergenic 60.0%
GCCACTCAACTCGAGAAGGG+TGG + chr2_4:4310028-4310047 Msa0309670:CDS 60.0%
!! GCCACCCTTCTCGAGTTGAG+TGG - chr2_4:4310032-4310051 None:intergenic 60.0%
!! ACCACTTGACCGAGGCGCTG+AGG + chr2_4:4308929-4308948 Msa0309670:CDS 65.0%
CAGGAGTAGCCTCAGCGCCT+CGG - chr2_4:4308941-4308960 None:intergenic 65.0%
!! AGGCGCTGAGGCTACTCCTG+AGG + chr2_4:4308941-4308960 Msa0309670:CDS 65.0%
!! ACCACTTGACCGAGGCGCTG+AGG + chr2_4:4308929-4308948 Msa0309670:CDS 65.0%
CAGGAGTAGCCTCAGCGCCT+CGG - chr2_4:4308941-4308960 None:intergenic 65.0%
!! AGGCGCTGAGGCTACTCCTG+AGG + chr2_4:4308941-4308960 Msa0309670:CDS 65.0%
GCCTCAGCGCCTCGGTCAAG+TGG - chr2_4:4308933-4308952 None:intergenic 70.0%
GCCTCAGCGCCTCGGTCAAG+TGG - chr2_4:4308933-4308952 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 4308646 4310148 4308646 ID=Msa0309670;Name=Msa0309670
chr2_4 mRNA 4308646 4310148 4308646 ID=Msa0309670-mRNA-1;Parent=Msa0309670;Name=Msa0309670-mRNA-1;_AED=0.27;_eAED=0.27;_QI=20|1|0.75|1|1|1|4|0|222
chr2_4 exon 4308646 4308983 4308646 ID=Msa0309670-mRNA-1:exon:1486;Parent=Msa0309670-mRNA-1
chr2_4 exon 4309110 4309223 4309110 ID=Msa0309670-mRNA-1:exon:1487;Parent=Msa0309670-mRNA-1
chr2_4 exon 4309592 4309690 4309592 ID=Msa0309670-mRNA-1:exon:1488;Parent=Msa0309670-mRNA-1
chr2_4 exon 4310011 4310148 4310011 ID=Msa0309670-mRNA-1:exon:1489;Parent=Msa0309670-mRNA-1
chr2_4 five_prime_UTR 4308646 4308665 4308646 ID=Msa0309670-mRNA-1:five_prime_utr;Parent=Msa0309670-mRNA-1
chr2_4 CDS 4308666 4308983 4308666 ID=Msa0309670-mRNA-1:cds;Parent=Msa0309670-mRNA-1
chr2_4 CDS 4309110 4309223 4309110 ID=Msa0309670-mRNA-1:cds;Parent=Msa0309670-mRNA-1
chr2_4 CDS 4309592 4309690 4309592 ID=Msa0309670-mRNA-1:cds;Parent=Msa0309670-mRNA-1
chr2_4 CDS 4310011 4310148 4310011 ID=Msa0309670-mRNA-1:cds;Parent=Msa0309670-mRNA-1
Gene Sequence

>Msa0309670

ATGACTTATCTCTTAGCAGTTCTCTCCACTCCCACTTCTACTCTGCCATTCAAATGTATAATTGATTCCCATCCTTCACAACCAAATCTTCCTTTTGCACCCCCACGACCAAAATTCAACACCACCAACATCATATTACCATCATCAGTAGCTGCTGATTCTGCAAAATGGAGGAGCATGGTTTCAATCTTCCAAGGTTTTCTAACTGGAGGAAGAGGAAAGGATGTTCAGAGCCTTAAAGTTGAGCTCTATGAAACAATTGCACCACTTGACCGAGGCGCTGAGGCTACTCCTGAGGACCAACAACGTGTGGACAAGATTGCTCGTAAACTCGAGGCTATGAACTCTGTTAAGGAGCCTCTCAACTCTGATTTGCTTAATGGAAAATGGGAGCTTTTATATACAACATCTCAATCAATTTTGCAAACACAGAGACCAAAATTCCTGCGACCAAATGGAAAGATCTACCAGGCAATTAACACGGATACATTGAGAGCTCAAAATATAGAAACTTGGCCATTTTACAACCAGGCCACTGCCAATATAGTGCCACTCAACTCGAGAAGGGTGGCTGTCAAGTTTGACTTCTTCAAAATCGCTAGTTTGGTGTGTAATGCCTGTATTTACTTTTCAATTTTCATATTTCGCCTATTTGCCATAGTCTTTTAA

Protein sequence

>Msa0309670

MTYLLAVLSTPTSTLPFKCIIDSHPSQPNLPFAPPRPKFNTTNIILPSSVAADSAKWRSMVSIFQGFLTGGRGKDVQSLKVELYETIAPLDRGAEATPEDQQRVDKIARKLEAMNSVKEPLNSDLLNGKWELLYTTSQSILQTQRPKFLRPNGKIYQAINTDTLRAQNIETWPFYNQATANIVPLNSRRVAVKFDFFKIASLVCNACIYFSIFIFRLFAIVF*