AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0017980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017980 MtrunA17_Chr1g0152171 94.318 264 8 3 1 258 1 263 6.93e-177 487
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0017980 AT1G44920.1 59.459 259 92 6 7 258 6 258 6.64e-98 287

Find 62 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTCATTTCTTCTTTCTA+TGG 0.204630 1_1:+30035019 None:intergenic
GTGCTTCTGGTGTTGAATTT+AGG 0.280781 1_1:+30034851 None:intergenic
AGAGATTGAAGTGATGAATT+TGG 0.292633 1_1:+30034901 None:intergenic
AGCCATATCCAATCTCCTTT+TGG 0.303381 1_1:-30034947 Msa0017980:CDS
TCAGGCCATTTGCCTAACTA+TGG 0.307108 1_1:-30032409 Msa0017980:CDS
GGCAGATAGGAATTGCAATA+AGG 0.319499 1_1:-30032441 Msa0017980:intron
GGGTCTAATGAAGGTGCTTC+TGG 0.321486 1_1:+30034838 None:intergenic
CCAAACATACCAGCTATAAA+AGG 0.329020 1_1:+30034394 None:intergenic
GTCTATGTTTCCTTCAGCTT+TGG 0.332013 1_1:+30034799 None:intergenic
TGCAGTAGCAATGACGCCTT+TGG 0.338369 1_1:+30033853 None:intergenic
GAATTTAGGTGGTTGATTAA+TGG 0.352205 1_1:+30034865 None:intergenic
AGGCGTGTAGCTCTGTTTGC+TGG 0.388205 1_1:-30034511 Msa0017980:CDS
CTCCAAAAGGAGATTGGATA+TGG 0.397818 1_1:+30034945 None:intergenic
CTCTTCTTACTATTGTCAAC+TGG 0.401605 1_1:+30032313 None:intergenic
GATTTAAATCATTTGTATCA+TGG 0.406563 1_1:-30031915 Msa0017980:three_prime_UTR
GCAATAAGGGCAGCAAAATC+AGG 0.408856 1_1:-30032427 Msa0017980:CDS
TGACAAGGATGTTCCATTAG+AGG 0.413397 1_1:-30034717 Msa0017980:CDS
CTAGCAGATCATAGTGCAAA+TGG 0.415936 1_1:+30031886 None:intergenic
ATACGAGATGAAGAGTTGTT+TGG 0.425511 1_1:+30034674 None:intergenic
TGAAATGTGACGATATTAGA+AGG 0.428150 1_1:-30031752 Msa0017980:three_prime_UTR
TCGTAAAGATAAACGTTAAG+TGG 0.434939 1_1:+30031784 None:intergenic
TTAGGTGCTTACTTCCTTGG+AGG 0.440953 1_1:-30033911 Msa0017980:CDS
AACTGAATAACACCCTCTAA+TGG 0.444731 1_1:+30034704 None:intergenic
GTTTGCTGGTGGTGATGTGT+TGG 0.448054 1_1:-30034497 Msa0017980:CDS
AACGATCGATTAAATGTTCA+AGG 0.454298 1_1:-30032097 Msa0017980:three_prime_UTR
ACATGGCTCCAAAAGGAGAT+TGG 0.458415 1_1:+30034939 None:intergenic
AACTGTAATGTATATGCATC+AGG 0.461805 1_1:-30032074 Msa0017980:three_prime_UTR
GCAGATAGGAATTGCAATAA+GGG 0.466853 1_1:-30032440 Msa0017980:intron
TCATTGCTACTGCAAAATCA+TGG 0.467859 1_1:-30033844 Msa0017980:CDS
CAAAACCATAGTTAGGCAAA+TGG 0.490644 1_1:+30032404 None:intergenic
CTGCAAAATCATGGGCTGTA+GGG 0.498651 1_1:-30033835 Msa0017980:CDS
ACTGCAAAATCATGGGCTGT+AGG 0.508711 1_1:-30033836 Msa0017980:CDS
CATTTGCACTATGATCTGCT+AGG 0.510585 1_1:-30031885 Msa0017980:three_prime_UTR
ACTAATACAAAACCATAGTT+AGG 0.511253 1_1:+30032397 None:intergenic
GGTTGAAGAGTTTGAAAACA+TGG 0.526188 1_1:+30034922 None:intergenic
GCAGTAGCAATGACGCCTTT+GGG 0.531373 1_1:+30033854 None:intergenic
TTTGAAAACATGGCTCCAAA+AGG 0.539077 1_1:+30034932 None:intergenic
TTGATCATTGGCAAAAGAAG+AGG 0.542935 1_1:+30034754 None:intergenic
AGCTTCTCACATCATTAGTA+CGG 0.543490 1_1:-30032127 Msa0017980:CDS
CTTCTGGTGTTGAATTTAGG+TGG 0.547043 1_1:+30034854 None:intergenic
TAGCAGATCATAGTGCAAAT+GGG 0.555937 1_1:+30031887 None:intergenic
GAAGATGGGCGTGGAATGAA+TGG 0.558299 1_1:-30033881 Msa0017980:CDS
TGATCATTGGCAAAAGAAGA+GGG 0.564070 1_1:+30034755 None:intergenic
TGATTAATGGAGAATTGTTG+TGG 0.564881 1_1:+30034878 None:intergenic
TTGGCTAGTGTAAGATGCAA+GGG 0.569643 1_1:+30034818 None:intergenic
CATTGCTACTGCAAAATCAT+GGG 0.569767 1_1:-30033843 Msa0017980:CDS
ACTATTGTCAACTGGAAGAA+CGG 0.577024 1_1:+30032321 None:intergenic
TTTGGCTAGTGTAAGATGCA+AGG 0.583472 1_1:+30034817 None:intergenic
TCAGATCACATGATGATGAA+AGG 0.584062 1_1:-30031841 Msa0017980:three_prime_UTR
GACAAGGATGTTCCATTAGA+GGG 0.603592 1_1:-30034716 Msa0017980:CDS
AAGATGCAAGGGTCTAATGA+AGG 0.606568 1_1:+30034829 None:intergenic
GATACAAAGAGATTTAGCTA+TGG 0.610588 1_1:+30032041 None:intergenic
TCACATCATTAGTACGGCGG+TGG 0.611971 1_1:-30032121 Msa0017980:CDS
CTTACACTAGCCAAAGCTGA+AGG 0.620752 1_1:-30034809 Msa0017980:CDS
CATCTTCACTAAAACCTCCA+AGG 0.627812 1_1:+30033897 None:intergenic
ACAATTGGAAGATATAGTCA+TGG 0.628651 1_1:-30034457 Msa0017980:CDS
CGTGTAGCTCTGTTTGCTGG+TGG 0.629973 1_1:-30034508 Msa0017980:CDS
GGAATGAATGGTCTACCCAA+AGG 0.648080 1_1:-30033869 Msa0017980:CDS
TTCTCACATCATTAGTACGG+CGG 0.687718 1_1:-30032124 Msa0017980:CDS
GATCACATGATGATGAAAGG+AGG 0.689143 1_1:-30031838 Msa0017980:three_prime_UTR
AAAGTTCAAAGGGACTTCCG+CGG 0.704061 1_1:+30032278 None:intergenic
AAGAGTGATGTCTATCGCCG+CGG 0.738642 1_1:-30032295 Msa0017980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACATTTTTGTTTTTATTTT+GGG - chr1_1:30032785-30032804 Msa0017980:intron 10.0%
!! AAAATATAAAGTTTCATTTA+TGG + chr1_1:30034057-30034076 None:intergenic 10.0%
!! AAAAAAATGATCATAATATG+TGG - chr1_1:30031730-30031749 Msa0017980:three_prime_UTR 15.0%
!!! GTTGTTTTTTTATGTAAAAA+TGG - chr1_1:30032173-30032192 Msa0017980:intron 15.0%
!!! GAACATTTTTGTTTTTATTT+TGG - chr1_1:30032784-30032803 Msa0017980:intron 15.0%
!!! ACATTTTTGTTTTTATTTTG+GGG - chr1_1:30032786-30032805 Msa0017980:intron 15.0%
!! TGAAAATTTAAAAAAGAATG+AGG - chr1_1:30033699-30033718 Msa0017980:intron 15.0%
!! GAAAATTTAAAAAAGAATGA+GGG - chr1_1:30033700-30033719 Msa0017980:intron 15.0%
!! AAAATTTAAAAAAGAATGAG+GGG - chr1_1:30033701-30033720 Msa0017980:intron 15.0%
!!! TTTAATCTTTTTTAACTTCT+TGG - chr1_1:30034317-30034336 Msa0017980:intron 15.0%
!!! ACTTTATGTGAATTTTTATC+TGG - chr1_1:30032198-30032217 Msa0017980:intron 20.0%
!!! CTTTATGTGAATTTTTATCT+GGG - chr1_1:30032199-30032218 Msa0017980:intron 20.0%
!!! ATGATAGATTTGAAATTTGT+TGG - chr1_1:30032816-30032835 Msa0017980:intron 20.0%
!!! ATGTCTTTTGTTAGTAAATT+TGG - chr1_1:30033182-30033201 Msa0017980:intron 20.0%
!! TACAACTTCTGTTAATAATT+TGG - chr1_1:30033249-30033268 Msa0017980:intron 20.0%
!! AAAAATGCAGTAATTCTTTA+GGG - chr1_1:30033812-30033831 Msa0017980:intron 20.0%
!! GATTTAAATCATTTGTATCA+TGG - chr1_1:30034864-30034883 Msa0017980:CDS 20.0%
! TTGTTCATTTCTTCTTTCTA+TGG + chr1_1:30031763-30031782 None:intergenic 25.0%
! AACAAAAACAGTTTGATCAT+TGG + chr1_1:30032040-30032059 None:intergenic 25.0%
!!! AATGATCAAACTGTTTTTGT+TGG - chr1_1:30032039-30032058 Msa0017980:three_prime_UTR 25.0%
! TTCATCTCGTATTGAAAAAT+GGG - chr1_1:30032116-30032135 Msa0017980:exon 25.0%
!!! GTTTTTGTTGTTATTGTTTG+TGG - chr1_1:30032221-30032240 Msa0017980:intron 25.0%
!!! TTGCTTTTGTTTTCAACAAT+TGG - chr1_1:30032307-30032326 Msa0017980:CDS 25.0%
!! ATGCATTCAATTTGAAGTAT+CGG + chr1_1:30032530-30032549 None:intergenic 25.0%
! AACAAACCTTCAATATGAAA+TGG + chr1_1:30032644-30032663 None:intergenic 25.0%
! TTCATTGATCAAACTTACAT+TGG - chr1_1:30032687-30032706 Msa0017980:intron 25.0%
! TTATTGCATTACTTGGAAAT+TGG - chr1_1:30033001-30033020 Msa0017980:intron 25.0%
!!! TTCTAGTTCTTAAATATGTG+TGG - chr1_1:30033136-30033155 Msa0017980:intron 25.0%
! TTGTTAGTAAATTTGGTTGT+CGG - chr1_1:30033189-30033208 Msa0017980:intron 25.0%
!! ATGTCTTTTGTTAGTTAGTT+TGG - chr1_1:30033218-30033237 Msa0017980:intron 25.0%
!! TTTATCCTAAAAGAGCTTTT+AGG + chr1_1:30033522-30033541 None:intergenic 25.0%
! TCATATAAATGCTCATGTAT+TGG - chr1_1:30033563-30033582 Msa0017980:intron 25.0%
!! TAGCATAATTTAGAGCTAAT+TGG + chr1_1:30033666-30033685 None:intergenic 25.0%
! GAAAAATGCAGTAATTCTTT+AGG - chr1_1:30033811-30033830 Msa0017980:intron 25.0%
! TCCATAATTTCGATACATTT+AGG - chr1_1:30033902-30033921 Msa0017980:CDS 25.0%
! CCATAATTTCGATACATTTA+GGG - chr1_1:30033903-30033922 Msa0017980:CDS 25.0%
!!! TTTTGGTTCATAAATATGTG+AGG + chr1_1:30033938-30033957 None:intergenic 25.0%
! AAAAAAATTGCCCTTAGTAA+GGG - chr1_1:30034234-30034253 Msa0017980:intron 25.0%
! ACTAATACAAAACCATAGTT+AGG + chr1_1:30034385-30034404 None:intergenic 25.0%
AGAGATTGAAGTGATGAATT+TGG + chr1_1:30031881-30031900 None:intergenic 30.0%
TGATTAATGGAGAATTGTTG+TGG + chr1_1:30031904-30031923 None:intergenic 30.0%
GAATTTAGGTGGTTGATTAA+TGG + chr1_1:30031917-30031936 None:intergenic 30.0%
CTTCATCTCGTATTGAAAAA+TGG - chr1_1:30032115-30032134 Msa0017980:exon 30.0%
TCATCTCGTATTGAAAAATG+GGG - chr1_1:30032117-30032136 Msa0017980:exon 30.0%
TGTTATTGTTTGTGGTTATG+AGG - chr1_1:30032229-30032248 Msa0017980:intron 30.0%
GTTATTGTTTGTGGTTATGA+GGG - chr1_1:30032230-30032249 Msa0017980:intron 30.0%
ACAATTGGAAGATATAGTCA+TGG - chr1_1:30032322-30032341 Msa0017980:CDS 30.0%
! ACCGACATTTTACAGTTAAA+TGG - chr1_1:30032590-30032609 Msa0017980:intron 30.0%
CCCATTTAACTGTAAAATGT+CGG + chr1_1:30032594-30032613 None:intergenic 30.0%
! CCGACATTTTACAGTTAAAT+GGG - chr1_1:30032591-30032610 Msa0017980:intron 30.0%
AAACCTTCAATATGAAATGG+TGG + chr1_1:30032641-30032660 None:intergenic 30.0%
! GATCAAACTTACATTGGTTA+CGG - chr1_1:30032693-30032712 Msa0017980:intron 30.0%
! ATTTGTTGGATGTGTTTCAA+TGG - chr1_1:30032830-30032849 Msa0017980:intron 30.0%
TTTGTTGGATGTGTTTCAAT+GGG - chr1_1:30032831-30032850 Msa0017980:intron 30.0%
GGAAAAAATTTGTGGAAAGA+TGG + chr1_1:30033033-30033052 None:intergenic 30.0%
AATGCTAGGGAAAAAATTTG+TGG + chr1_1:30033041-30033060 None:intergenic 30.0%
CTCTGAATGTATCGAAATTA+TGG + chr1_1:30033276-30033295 None:intergenic 30.0%
CATAATTTCGATACATTCAG+AGG - chr1_1:30033274-30033293 Msa0017980:intron 30.0%
CAATGCCTCACAAAATAATT+TGG - chr1_1:30033305-30033324 Msa0017980:intron 30.0%
!! ATGGACCAAATTATTTTGTG+AGG + chr1_1:30033313-30033332 None:intergenic 30.0%
! GAAAAACTGCATCGATATTA+TGG + chr1_1:30033332-30033351 None:intergenic 30.0%
GAACACTTGAATCAATAGTT+AGG - chr1_1:30033352-30033371 Msa0017980:intron 30.0%
TAAACATAACCTGACAAAGT+TGG - chr1_1:30033382-30033401 Msa0017980:intron 30.0%
TATCATCAAAGAAGCTTTCA+AGG + chr1_1:30033771-30033790 None:intergenic 30.0%
! TTGAAAGCTTCTTTGATGAT+AGG - chr1_1:30033770-30033789 Msa0017980:intron 30.0%
! TGAAAGCTTCTTTGATGATA+GGG - chr1_1:30033771-30033790 Msa0017980:intron 30.0%
AACTAACAAAAGACACGTTT+AGG + chr1_1:30033843-30033862 None:intergenic 30.0%
! GTGTCTTTTGTTAGTTAGTT+TGG - chr1_1:30033847-30033866 Msa0017980:CDS 30.0%
CCCTAAATGTATCGAAATTA+TGG + chr1_1:30033906-30033925 None:intergenic 30.0%
! AAACGAGTAAACAGTCATTT+TGG + chr1_1:30033955-30033974 None:intergenic 30.0%
TCTAAGCTGTAATTAGCAAA+TGG + chr1_1:30034134-30034153 None:intergenic 30.0%
ACAGCTGCATTTAATTCATA+GGG - chr1_1:30034153-30034172 Msa0017980:intron 30.0%
!! TTTTTCAACTCAACCAAAAG+TGG + chr1_1:30034219-30034238 None:intergenic 30.0%
GAAAAAAATTGCCCTTAGTA+AGG - chr1_1:30034233-30034252 Msa0017980:intron 30.0%
!!! TTTTTAACTTCTTGGCAGAT+AGG - chr1_1:30034325-30034344 Msa0017980:intron 30.0%
TGTACCTCAAAAAGTTCAAA+GGG + chr1_1:30034514-30034533 None:intergenic 30.0%
ATGTACCTCAAAAAGTTCAA+AGG + chr1_1:30034515-30034534 None:intergenic 30.0%
AACGATCGATTAAATGTTCA+AGG - chr1_1:30034682-30034701 Msa0017980:CDS 30.0%
AACTGTAATGTATATGCATC+AGG - chr1_1:30034705-30034724 Msa0017980:CDS 30.0%
GATACAAAGAGATTTAGCTA+TGG + chr1_1:30034741-30034760 None:intergenic 30.0%
TCGTAAAGATAAACGTTAAG+TGG + chr1_1:30034998-30035017 None:intergenic 30.0%
TGAAATGTGACGATATTAGA+AGG - chr1_1:30035027-30035046 Msa0017980:five_prime_UTR 30.0%
TTTGAAAACATGGCTCCAAA+AGG + chr1_1:30031850-30031869 None:intergenic 35.0%
GGTTGAAGAGTTTGAAAACA+TGG + chr1_1:30031860-30031879 None:intergenic 35.0%
TGATCATTGGCAAAAGAAGA+GGG + chr1_1:30032027-30032046 None:intergenic 35.0%
TTGATCATTGGCAAAAGAAG+AGG + chr1_1:30032028-30032047 None:intergenic 35.0%
!!! AACTGTTTTTGTTGGTGACA+AGG - chr1_1:30032047-30032066 Msa0017980:three_prime_UTR 35.0%
AACTGAATAACACCCTCTAA+TGG + chr1_1:30032078-30032097 None:intergenic 35.0%
ATACGAGATGAAGAGTTGTT+TGG + chr1_1:30032108-30032127 None:intergenic 35.0%
CATCTCGTATTGAAAAATGG+GGG - chr1_1:30032118-30032137 Msa0017980:CDS 35.0%
CCAAACATACCAGCTATAAA+AGG + chr1_1:30032388-30032407 None:intergenic 35.0%
! CCTTTTATAGCTGGTATGTT+TGG - chr1_1:30032385-30032404 Msa0017980:CDS 35.0%
GTGAAGAGTTGCAATCAAAT+AGG - chr1_1:30032480-30032499 Msa0017980:intron 35.0%
TGTCGGATATTGATATGTGT+CGG + chr1_1:30032571-30032590 None:intergenic 35.0%
TAACTGTAAAATGTCGGTGT+CGG + chr1_1:30032588-30032607 None:intergenic 35.0%
!!! GACCTGTTTTTAAAACCTTG+TGG - chr1_1:30032758-30032777 Msa0017980:intron 35.0%
!!! AGCCACAAGGTTTTAAAAAC+AGG + chr1_1:30032763-30032782 None:intergenic 35.0%
ACAAAAATGTTCAAGCCACA+AGG + chr1_1:30032776-30032795 None:intergenic 35.0%
!!! TTTTTAGGTGCTTACTTCCT+TGG - chr1_1:30032865-30032884 Msa0017980:intron 35.0%
!! TTGGAGGTTTTAGTGAAGAT+GGG - chr1_1:30032884-30032903 Msa0017980:intron 35.0%
TCATTGCTACTGCAAAATCA+TGG - chr1_1:30032935-30032954 Msa0017980:intron 35.0%
CATTGCTACTGCAAAATCAT+GGG - chr1_1:30032936-30032955 Msa0017980:intron 35.0%
AAGAAGCCATTCAACTTACA+GGG + chr1_1:30032972-30032991 None:intergenic 35.0%
TAAGAAGCCATTCAACTTAC+AGG + chr1_1:30032973-30032992 None:intergenic 35.0%
GTGAAGCTTATTGCATTACT+TGG - chr1_1:30032994-30033013 Msa0017980:intron 35.0%
AAGATAGTTAGTCGTGTCAT+GGG + chr1_1:30033418-30033437 None:intergenic 35.0%
AAAGATAGTTAGTCGTGTCA+TGG + chr1_1:30033419-30033438 None:intergenic 35.0%
GACAGCTGCATTTAATTCAT+AGG - chr1_1:30034152-30034171 Msa0017980:intron 35.0%
!!! TTGAACTTTGAGACCACTTT+TGG - chr1_1:30034203-30034222 Msa0017980:intron 35.0%
AAACATGTCACCCTTACTAA+GGG + chr1_1:30034247-30034266 None:intergenic 35.0%
AAAACATGTCACCCTTACTA+AGG + chr1_1:30034248-30034267 None:intergenic 35.0%
GCAGATAGGAATTGCAATAA+GGG - chr1_1:30034339-30034358 Msa0017980:intron 35.0%
CAAAACCATAGTTAGGCAAA+TGG + chr1_1:30034378-30034397 None:intergenic 35.0%
!! GGTTTTGTATTAGTGAGTCT+TGG - chr1_1:30034391-30034410 Msa0017980:intron 35.0%
ACTATTGTCAACTGGAAGAA+CGG + chr1_1:30034461-30034480 None:intergenic 35.0%
CTCTTCTTACTATTGTCAAC+TGG + chr1_1:30034469-30034488 None:intergenic 35.0%
! AAGTCCCTTTGAACTTTTTG+AGG - chr1_1:30034507-30034526 Msa0017980:CDS 35.0%
AGCTTCTCACATCATTAGTA+CGG - chr1_1:30034652-30034671 Msa0017980:intron 35.0%
TAGCAGATCATAGTGCAAAT+GGG + chr1_1:30034895-30034914 None:intergenic 35.0%
! TCAGATCACATGATGATGAA+AGG - chr1_1:30034938-30034957 Msa0017980:CDS 35.0%
! AGCCATATCCAATCTCCTTT+TGG - chr1_1:30031832-30031851 Msa0017980:three_prime_UTR 40.0%
CTCCAAAAGGAGATTGGATA+TGG + chr1_1:30031837-30031856 None:intergenic 40.0%
! CTTCTGGTGTTGAATTTAGG+TGG + chr1_1:30031928-30031947 None:intergenic 40.0%
! GTGCTTCTGGTGTTGAATTT+AGG + chr1_1:30031931-30031950 None:intergenic 40.0%
AAGATGCAAGGGTCTAATGA+AGG + chr1_1:30031953-30031972 None:intergenic 40.0%
TTGGCTAGTGTAAGATGCAA+GGG + chr1_1:30031964-30031983 None:intergenic 40.0%
TTTGGCTAGTGTAAGATGCA+AGG + chr1_1:30031965-30031984 None:intergenic 40.0%
GTCTATGTTTCCTTCAGCTT+TGG + chr1_1:30031983-30032002 None:intergenic 40.0%
!! GCAAAAGAAGAGGGTTTTGT+AGG + chr1_1:30032018-30032037 None:intergenic 40.0%
TGACAAGGATGTTCCATTAG+AGG - chr1_1:30032062-30032081 Msa0017980:three_prime_UTR 40.0%
GACAAGGATGTTCCATTAGA+GGG - chr1_1:30032063-30032082 Msa0017980:three_prime_UTR 40.0%
!!! GAGGGTTGTTGTTTTGTTGT+AGG - chr1_1:30032248-30032267 Msa0017980:intron 40.0%
! ACTGCTGATCCTTTTATAGC+TGG - chr1_1:30032376-30032395 Msa0017980:CDS 40.0%
GAATGCATGTCTAGCATGTT+TGG - chr1_1:30032542-30032561 Msa0017980:intron 40.0%
GCACCACCATTTCATATTGA+AGG - chr1_1:30032635-30032654 Msa0017980:intron 40.0%
CATCTTCACTAAAACCTCCA+AGG + chr1_1:30032885-30032904 None:intergenic 40.0%
!! CTTGGAGGTTTTAGTGAAGA+TGG - chr1_1:30032883-30032902 Msa0017980:intron 40.0%
ACACAGCTACACTAATGCTA+GGG + chr1_1:30033054-30033073 None:intergenic 40.0%
AACACAGCTACACTAATGCT+AGG + chr1_1:30033055-30033074 None:intergenic 40.0%
AGATAGTTAGTCGTGTCATG+GGG + chr1_1:30033417-30033436 None:intergenic 40.0%
!!! AACAGCATGCTGATTTTTGC+AGG - chr1_1:30033496-30033515 Msa0017980:intron 40.0%
TTTCTCTCGCTTCAATTGTG+TGG + chr1_1:30033731-30033750 None:intergenic 40.0%
! CATAAATATGTGAGGCGTTC+AGG + chr1_1:30033930-30033949 None:intergenic 40.0%
! TCAGTTTTCAGCAAGATCAC+TGG + chr1_1:30034283-30034302 None:intergenic 40.0%
GGCAGATAGGAATTGCAATA+AGG - chr1_1:30034338-30034357 Msa0017980:intron 40.0%
TTCTCACATCATTAGTACGG+CGG - chr1_1:30034655-30034674 Msa0017980:intron 40.0%
CTAGCAGATCATAGTGCAAA+TGG + chr1_1:30034896-30034915 None:intergenic 40.0%
CATTTGCACTATGATCTGCT+AGG - chr1_1:30034894-30034913 Msa0017980:CDS 40.0%
! GATCACATGATGATGAAAGG+AGG - chr1_1:30034941-30034960 Msa0017980:CDS 40.0%
ACATGGCTCCAAAAGGAGAT+TGG + chr1_1:30031843-30031862 None:intergenic 45.0%
CTTACACTAGCCAAAGCTGA+AGG - chr1_1:30031970-30031989 Msa0017980:three_prime_UTR 45.0%
GTTTGTATGCACGTCTGTGT+TGG - chr1_1:30032661-30032680 Msa0017980:intron 45.0%
CAGGTCTGCAACATCAATCT+CGG + chr1_1:30032744-30032763 None:intergenic 45.0%
GTTGGATGTGTTTCAATGGG+TGG - chr1_1:30032834-30032853 Msa0017980:intron 45.0%
ATGTGTTTCAATGGGTGGCA+GGG - chr1_1:30032839-30032858 Msa0017980:intron 45.0%
TTAGGTGCTTACTTCCTTGG+AGG - chr1_1:30032868-30032887 Msa0017980:intron 45.0%
GGAATGAATGGTCTACCCAA+AGG - chr1_1:30032910-30032929 Msa0017980:intron 45.0%
! ACTGCAAAATCATGGGCTGT+AGG - chr1_1:30032943-30032962 Msa0017980:intron 45.0%
! CTGCAAAATCATGGGCTGTA+GGG - chr1_1:30032944-30032963 Msa0017980:intron 45.0%
! AGGGATCCCTGTAAGTTGAA+TGG - chr1_1:30032963-30032982 Msa0017980:intron 45.0%
CCTTTGTTGCCAACTTTGTC+AGG + chr1_1:30033394-30033413 None:intergenic 45.0%
CCTGACAAAGTTGGCAACAA+AGG - chr1_1:30033391-30033410 Msa0017980:intron 45.0%
! GCAGGCCTAAAAGCTCTTTT+AGG - chr1_1:30033514-30033533 Msa0017980:intron 45.0%
! TTGATGATAGGGTCTTGTGC+AGG - chr1_1:30033782-30033801 Msa0017980:intron 45.0%
GCAATAAGGGCAGCAAAATC+AGG - chr1_1:30034352-30034371 Msa0017980:intron 45.0%
TCAGGCCATTTGCCTAACTA+TGG - chr1_1:30034370-30034389 Msa0017980:intron 45.0%
AAAGTTCAAAGGGACTTCCG+CGG + chr1_1:30034504-30034523 None:intergenic 45.0%
!! GGGTCTAATGAAGGTGCTTC+TGG + chr1_1:30031944-30031963 None:intergenic 50.0%
! GTTTGCTGGTGGTGATGTGT+TGG - chr1_1:30032282-30032301 Msa0017980:CDS 50.0%
! AAATGGGCTCATGCAGCCTT+AGG - chr1_1:30032607-30032626 Msa0017980:intron 50.0%
! AATGGGCTCATGCAGCCTTA+GGG - chr1_1:30032608-30032627 Msa0017980:intron 50.0%
!! AATGGTGGTGCTACACCCTA+AGG + chr1_1:30032626-30032645 None:intergenic 50.0%
GATGTGTTTCAATGGGTGGC+AGG - chr1_1:30032838-30032857 Msa0017980:intron 50.0%
!! GGTTTTAGTGAAGATGGGCG+TGG - chr1_1:30032889-30032908 Msa0017980:intron 50.0%
GAAGATGGGCGTGGAATGAA+TGG - chr1_1:30032898-30032917 Msa0017980:intron 50.0%
GCAGTAGCAATGACGCCTTT+GGG + chr1_1:30032928-30032947 None:intergenic 50.0%
TGCAGTAGCAATGACGCCTT+TGG + chr1_1:30032929-30032948 None:intergenic 50.0%
AAGAGTGATGTCTATCGCCG+CGG - chr1_1:30034484-30034503 Msa0017980:CDS 50.0%
TCACATCATTAGTACGGCGG+TGG - chr1_1:30034658-30034677 Msa0017980:intron 50.0%
! AGGCGTGTAGCTCTGTTTGC+TGG - chr1_1:30032268-30032287 Msa0017980:intron 55.0%
! CGTGTAGCTCTGTTTGCTGG+TGG - chr1_1:30032271-30032290 Msa0017980:intron 55.0%
TGTTTCAATGGGTGGCAGGG+TGG - chr1_1:30032842-30032861 Msa0017980:intron 55.0%
! TGGGTGGCAGGGTGGTTTTT+AGG - chr1_1:30032850-30032869 Msa0017980:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 30031730 30035071 30031730 ID=Msa0017980;Name=Msa0017980
chr1_1 mRNA 30031730 30035071 30031730 ID=Msa0017980-mRNA-1;Parent=Msa0017980;Name=Msa0017980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=90|1|1|1|0.75|0.8|5|388|258
chr1_1 exon 30031730 30032147 30031730 ID=Msa0017980-mRNA-1:exon:10031;Parent=Msa0017980-mRNA-1
chr1_1 exon 30032273 30032458 30032273 ID=Msa0017980-mRNA-1:exon:10030;Parent=Msa0017980-mRNA-1
chr1_1 exon 30033829 30033941 30033829 ID=Msa0017980-mRNA-1:exon:10029;Parent=Msa0017980-mRNA-1
chr1_1 exon 30034404 30034531 30034404 ID=Msa0017980-mRNA-1:exon:10028;Parent=Msa0017980-mRNA-1
chr1_1 exon 30034662 30035071 30034662 ID=Msa0017980-mRNA-1:exon:10027;Parent=Msa0017980-mRNA-1
chr1_1 five_prime_UTR 30034982 30035071 30034982 ID=Msa0017980-mRNA-1:five_prime_utr;Parent=Msa0017980-mRNA-1
chr1_1 CDS 30034662 30034981 30034662 ID=Msa0017980-mRNA-1:cds;Parent=Msa0017980-mRNA-1
chr1_1 CDS 30034404 30034531 30034404 ID=Msa0017980-mRNA-1:cds;Parent=Msa0017980-mRNA-1
chr1_1 CDS 30033829 30033941 30033829 ID=Msa0017980-mRNA-1:cds;Parent=Msa0017980-mRNA-1
chr1_1 CDS 30032273 30032458 30032273 ID=Msa0017980-mRNA-1:cds;Parent=Msa0017980-mRNA-1
chr1_1 CDS 30032118 30032147 30032118 ID=Msa0017980-mRNA-1:cds;Parent=Msa0017980-mRNA-1
chr1_1 three_prime_UTR 30031730 30032117 30031730 ID=Msa0017980-mRNA-1:three_prime_utr;Parent=Msa0017980-mRNA-1
Gene Sequence

>Msa0017980

ATGATACTTGTTAGCCATATCCAATCTCCTTTTGGAGCCATGTTTTCAAACTCTTCAACCAAATTCATCACTTCAATCTCTCCACAACAATTCTCCATTAATCAACCACCTAAATTCAACACCAGAAGCACCTTCATTAGACCCTTGCATCTTACACTAGCCAAAGCTGAAGGAAACATAGACTCATCATCTTCACCTACAAAACCCTCTTCTTTTGCCAATGATCAAACTGTTTTTGTTGGTGACAAGGATGTTCCATTAGAGGGTGTTATTCAGTTTGACAAACCAAACAACTCTTCATCTCGTATTGAAAAATGGGGGCGTGTAGCTCTGTTTGCTGGTGGTGATGTGTTGGCTTTGCTTTTGTTTTCAACAATTGGAAGATATAGTCATGGACTGTCTGTTTTTGACTTTGAGACTCTGCACACTGCTGATCCTTTTATAGCTGGGTGGTTTTTAGGTGCTTACTTCCTTGGAGGTTTTAGTGAAGATGGGCGTGGAATGAATGGTCTACCCAAAGGCGTCATTGCTACTGCAAAATCATGGGCTGTAGGGATCCCTATAGGAATTGCAATAAGGGCAGCAAAATCAGGCCATTTGCCTAACTATGGTTTTGTATTAGTGAGTCTTGGAAGCACTGCTGTTTTACTAATCGCAGTCAGAGCTTTATTATACGCCGTTCTTCCAGTTGACAATAGTAAGAAGAGTGATGTCTATCGCCGCGGAAGTCCCTTTGAACTTTTTGAGCTTCTCACATCATTAGTACGGCGGTGGTAA

Protein sequence

>Msa0017980

MILVSHIQSPFGAMFSNSSTKFITSISPQQFSINQPPKFNTRSTFIRPLHLTLAKAEGNIDSSSSPTKPSSFANDQTVFVGDKDVPLEGVIQFDKPNNSSSRIEKWGRVALFAGGDVLALLLFSTIGRYSHGLSVFDFETLHTADPFIAGWFLGAYFLGGFSEDGRGMNGLPKGVIATAKSWAVGIPIGIAIRAAKSGHLPNYGFVLVSLGSTAVLLIAVRALLYAVLPVDNSKKSDVYRRGSPFELFELLTSLVRRW*