AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0097730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097730 MtrunA17_Chr1g0152171 94.318 264 8 3 1 258 1 263 6.93e-177 487
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0097730 AT1G44920.1 59.459 259 92 6 7 258 6 258 6.64e-98 287

Find 62 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTCATTTCTTCTTTCTA+TGG 0.204630 1_3:-3576206 None:intergenic
GTGCTTCTGGTGTTGAATTT+AGG 0.280781 1_3:-3576374 None:intergenic
AGAGATTGAAGTGATGAATT+TGG 0.292633 1_3:-3576324 None:intergenic
AGCCATATCCAATCTCCTTT+TGG 0.303381 1_3:+3576278 Msa0097730:CDS
TCAGGCCATTTGCCTAACTA+TGG 0.307108 1_3:+3578814 Msa0097730:CDS
GGCAGATAGGAATTGCAATA+AGG 0.319499 1_3:+3578782 Msa0097730:intron
GGGTCTAATGAAGGTGCTTC+TGG 0.321486 1_3:-3576387 None:intergenic
CCAAACATACCAGCTATAAA+AGG 0.329020 1_3:-3576831 None:intergenic
GTCTATGTTTCCTTCAGCTT+TGG 0.332013 1_3:-3576426 None:intergenic
TGCAGTAGCAATGACGCCTT+TGG 0.338369 1_3:-3577372 None:intergenic
GAATTTAGGTGGTTGATTAA+TGG 0.352205 1_3:-3576360 None:intergenic
AGGCGTGTAGCTCTGTTTGC+TGG 0.388205 1_3:+3576714 Msa0097730:intron
CTCCAAAAGGAGATTGGATA+TGG 0.397818 1_3:-3576280 None:intergenic
CTCTTCTTACTATTGTCAAC+TGG 0.401605 1_3:-3578910 None:intergenic
GATTTAAATCATTTGTATCA+TGG 0.406563 1_3:+3579308 Msa0097730:three_prime_UTR
GCAATAAGGGCAGCAAAATC+AGG 0.408856 1_3:+3578796 Msa0097730:CDS
TGACAAGGATGTTCCATTAG+AGG 0.413397 1_3:+3576508 Msa0097730:CDS
CTAGCAGATCATAGTGCAAA+TGG 0.415936 1_3:-3579337 None:intergenic
ATACGAGATGAAGAGTTGTT+TGG 0.425511 1_3:-3576551 None:intergenic
TGAAATGTGACGATATTAGA+AGG 0.428150 1_3:+3579471 Msa0097730:three_prime_UTR
TCGTAAAGATAAACGTTAAG+TGG 0.434939 1_3:-3579439 None:intergenic
TTAGGTGCTTACTTCCTTGG+AGG 0.440953 1_3:+3577314 Msa0097730:CDS
AACTGAATAACACCCTCTAA+TGG 0.444731 1_3:-3576521 None:intergenic
GTTTGCTGGTGGTGATGTGT+TGG 0.448054 1_3:+3576728 Msa0097730:CDS
AACGATCGATTAAATGTTCA+AGG 0.454298 1_3:+3579126 Msa0097730:exon
ACATGGCTCCAAAAGGAGAT+TGG 0.458415 1_3:-3576286 None:intergenic
AACTGTAATGTATATGCATC+AGG 0.461805 1_3:+3579149 Msa0097730:three_prime_UTR
GCAGATAGGAATTGCAATAA+GGG 0.466853 1_3:+3578783 Msa0097730:intron
TCATTGCTACTGCAAAATCA+TGG 0.467859 1_3:+3577381 Msa0097730:CDS
CAAAACCATAGTTAGGCAAA+TGG 0.490644 1_3:-3578819 None:intergenic
CTGCAAAATCATGGGCTGTA+GGG 0.498651 1_3:+3577390 Msa0097730:CDS
ACTGCAAAATCATGGGCTGT+AGG 0.508711 1_3:+3577389 Msa0097730:CDS
CATTTGCACTATGATCTGCT+AGG 0.510585 1_3:+3579338 Msa0097730:three_prime_UTR
ACTAATACAAAACCATAGTT+AGG 0.511253 1_3:-3578826 None:intergenic
GGTTGAAGAGTTTGAAAACA+TGG 0.526188 1_3:-3576303 None:intergenic
GCAGTAGCAATGACGCCTTT+GGG 0.531373 1_3:-3577371 None:intergenic
TTTGAAAACATGGCTCCAAA+AGG 0.539077 1_3:-3576293 None:intergenic
TTGATCATTGGCAAAAGAAG+AGG 0.542935 1_3:-3576471 None:intergenic
AGCTTCTCACATCATTAGTA+CGG 0.543490 1_3:+3579096 Msa0097730:intron
CTTCTGGTGTTGAATTTAGG+TGG 0.547043 1_3:-3576371 None:intergenic
TAGCAGATCATAGTGCAAAT+GGG 0.555937 1_3:-3579336 None:intergenic
GAAGATGGGCGTGGAATGAA+TGG 0.558299 1_3:+3577344 Msa0097730:CDS
TGATCATTGGCAAAAGAAGA+GGG 0.564070 1_3:-3576470 None:intergenic
TGATTAATGGAGAATTGTTG+TGG 0.564881 1_3:-3576347 None:intergenic
TTGGCTAGTGTAAGATGCAA+GGG 0.569643 1_3:-3576407 None:intergenic
CATTGCTACTGCAAAATCAT+GGG 0.569767 1_3:+3577382 Msa0097730:CDS
ACTATTGTCAACTGGAAGAA+CGG 0.577024 1_3:-3578902 None:intergenic
TTTGGCTAGTGTAAGATGCA+AGG 0.583472 1_3:-3576408 None:intergenic
TCAGATCACATGATGATGAA+AGG 0.584062 1_3:+3579382 Msa0097730:three_prime_UTR
GACAAGGATGTTCCATTAGA+GGG 0.603592 1_3:+3576509 Msa0097730:CDS
AAGATGCAAGGGTCTAATGA+AGG 0.606568 1_3:-3576396 None:intergenic
GATACAAAGAGATTTAGCTA+TGG 0.610588 1_3:-3579182 None:intergenic
TCACATCATTAGTACGGCGG+TGG 0.611971 1_3:+3579102 Msa0097730:CDS
CTTACACTAGCCAAAGCTGA+AGG 0.620752 1_3:+3576416 Msa0097730:CDS
CATCTTCACTAAAACCTCCA+AGG 0.627812 1_3:-3577328 None:intergenic
ACAATTGGAAGATATAGTCA+TGG 0.628651 1_3:+3576768 Msa0097730:CDS
CGTGTAGCTCTGTTTGCTGG+TGG 0.629973 1_3:+3576717 Msa0097730:CDS
GGAATGAATGGTCTACCCAA+AGG 0.648080 1_3:+3577356 Msa0097730:CDS
TTCTCACATCATTAGTACGG+CGG 0.687718 1_3:+3579099 Msa0097730:CDS
GATCACATGATGATGAAAGG+AGG 0.689143 1_3:+3579385 Msa0097730:three_prime_UTR
AAAGTTCAAAGGGACTTCCG+CGG 0.704061 1_3:-3578945 None:intergenic
AAGAGTGATGTCTATCGCCG+CGG 0.738642 1_3:+3578928 Msa0097730:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACATTTTTGTTTTTATTTT+GGG + chr1_3:3577231-3577250 Msa0097730:intron 10.0%
!! AAAATATAAAGTTTCATTTA+TGG - chr1_3:3578502-3578521 None:intergenic 10.0%
!! AAAAAAATGATCATAATATG+TGG + chr1_3:3576176-3576195 Msa0097730:five_prime_UTR 15.0%
!!! GTTGTTTTTTTATGTAAAAA+TGG + chr1_3:3576619-3576638 Msa0097730:intron 15.0%
!!! GAACATTTTTGTTTTTATTT+TGG + chr1_3:3577230-3577249 Msa0097730:intron 15.0%
!!! ACATTTTTGTTTTTATTTTG+GGG + chr1_3:3577232-3577251 Msa0097730:intron 15.0%
!! TGAAAATTTAAAAAAGAATG+AGG + chr1_3:3578144-3578163 Msa0097730:intron 15.0%
!! GAAAATTTAAAAAAGAATGA+GGG + chr1_3:3578145-3578164 Msa0097730:intron 15.0%
!! AAAATTTAAAAAAGAATGAG+GGG + chr1_3:3578146-3578165 Msa0097730:intron 15.0%
!!! TTTAATCTTTTTTAACTTCT+TGG + chr1_3:3578761-3578780 Msa0097730:intron 15.0%
!!! ACTTTATGTGAATTTTTATC+TGG + chr1_3:3576644-3576663 Msa0097730:intron 20.0%
!!! CTTTATGTGAATTTTTATCT+GGG + chr1_3:3576645-3576664 Msa0097730:intron 20.0%
!!! ATGATAGATTTGAAATTTGT+TGG + chr1_3:3577262-3577281 Msa0097730:intron 20.0%
!!! ATGTCTTTTGTTAGTAAATT+TGG + chr1_3:3577627-3577646 Msa0097730:intron 20.0%
!! TACAACTTCTGTTAATAATT+TGG + chr1_3:3577694-3577713 Msa0097730:intron 20.0%
!! AAAAATGCAGTAATTCTTTA+GGG + chr1_3:3578257-3578276 Msa0097730:intron 20.0%
!! GATTTAAATCATTTGTATCA+TGG + chr1_3:3579308-3579327 Msa0097730:three_prime_UTR 20.0%
! TTGTTCATTTCTTCTTTCTA+TGG - chr1_3:3576209-3576228 None:intergenic 25.0%
! AACAAAAACAGTTTGATCAT+TGG - chr1_3:3576486-3576505 None:intergenic 25.0%
!!! AATGATCAAACTGTTTTTGT+TGG + chr1_3:3576485-3576504 Msa0097730:CDS 25.0%
! TTCATCTCGTATTGAAAAAT+GGG + chr1_3:3576562-3576581 Msa0097730:CDS 25.0%
!!! GTTTTTGTTGTTATTGTTTG+TGG + chr1_3:3576667-3576686 Msa0097730:intron 25.0%
!!! TTGCTTTTGTTTTCAACAAT+TGG + chr1_3:3576753-3576772 Msa0097730:CDS 25.0%
!! ATGCATTCAATTTGAAGTAT+CGG - chr1_3:3576976-3576995 None:intergenic 25.0%
! AACAAACCTTCAATATGAAA+TGG - chr1_3:3577090-3577109 None:intergenic 25.0%
! TTCATTGATCAAACTTACAT+TGG + chr1_3:3577133-3577152 Msa0097730:intron 25.0%
! TTATTGCATTACTTGGAAAT+TGG + chr1_3:3577447-3577466 Msa0097730:intron 25.0%
!!! TTCTAGTTCTTAAATATGTG+TGG + chr1_3:3577581-3577600 Msa0097730:intron 25.0%
! TTGTTAGTAAATTTGGTTGT+CGG + chr1_3:3577634-3577653 Msa0097730:intron 25.0%
!! ATGTCTTTTGTTAGTTAGTT+TGG + chr1_3:3577663-3577682 Msa0097730:intron 25.0%
!! TTTATCCTAAAAGAGCTTTT+AGG - chr1_3:3577967-3577986 None:intergenic 25.0%
! TCATATAAATGCTCATGTAT+TGG + chr1_3:3578008-3578027 Msa0097730:intron 25.0%
!! TAGCATAATTTAGAGCTAAT+TGG - chr1_3:3578111-3578130 None:intergenic 25.0%
! GAAAAATGCAGTAATTCTTT+AGG + chr1_3:3578256-3578275 Msa0097730:intron 25.0%
! TCCATAATTTCGATACATTT+AGG + chr1_3:3578347-3578366 Msa0097730:intron 25.0%
! CCATAATTTCGATACATTTA+GGG + chr1_3:3578348-3578367 Msa0097730:intron 25.0%
!!! TTTTGGTTCATAAATATGTG+AGG - chr1_3:3578383-3578402 None:intergenic 25.0%
! AAAAAAATTGCCCTTAGTAA+GGG + chr1_3:3578679-3578698 Msa0097730:intron 25.0%
! ACTAATACAAAACCATAGTT+AGG - chr1_3:3578829-3578848 None:intergenic 25.0%
AGAGATTGAAGTGATGAATT+TGG - chr1_3:3576327-3576346 None:intergenic 30.0%
TGATTAATGGAGAATTGTTG+TGG - chr1_3:3576350-3576369 None:intergenic 30.0%
GAATTTAGGTGGTTGATTAA+TGG - chr1_3:3576363-3576382 None:intergenic 30.0%
CTTCATCTCGTATTGAAAAA+TGG + chr1_3:3576561-3576580 Msa0097730:CDS 30.0%
TCATCTCGTATTGAAAAATG+GGG + chr1_3:3576563-3576582 Msa0097730:CDS 30.0%
TGTTATTGTTTGTGGTTATG+AGG + chr1_3:3576675-3576694 Msa0097730:intron 30.0%
GTTATTGTTTGTGGTTATGA+GGG + chr1_3:3576676-3576695 Msa0097730:intron 30.0%
ACAATTGGAAGATATAGTCA+TGG + chr1_3:3576768-3576787 Msa0097730:CDS 30.0%
! ACCGACATTTTACAGTTAAA+TGG + chr1_3:3577036-3577055 Msa0097730:intron 30.0%
CCCATTTAACTGTAAAATGT+CGG - chr1_3:3577040-3577059 None:intergenic 30.0%
! CCGACATTTTACAGTTAAAT+GGG + chr1_3:3577037-3577056 Msa0097730:intron 30.0%
AAACCTTCAATATGAAATGG+TGG - chr1_3:3577087-3577106 None:intergenic 30.0%
! GATCAAACTTACATTGGTTA+CGG + chr1_3:3577139-3577158 Msa0097730:intron 30.0%
! ATTTGTTGGATGTGTTTCAA+TGG + chr1_3:3577276-3577295 Msa0097730:intron 30.0%
TTTGTTGGATGTGTTTCAAT+GGG + chr1_3:3577277-3577296 Msa0097730:intron 30.0%
GGAAAAAATTTGTGGAAAGA+TGG - chr1_3:3577479-3577498 None:intergenic 30.0%
AATGCTAGGGAAAAAATTTG+TGG - chr1_3:3577487-3577506 None:intergenic 30.0%
CTCTGAATGTATCGAAATTA+TGG - chr1_3:3577721-3577740 None:intergenic 30.0%
CATAATTTCGATACATTCAG+AGG + chr1_3:3577719-3577738 Msa0097730:intron 30.0%
CAATGCCTCACAAAATAATT+TGG + chr1_3:3577750-3577769 Msa0097730:intron 30.0%
!! ATGGACCAAATTATTTTGTG+AGG - chr1_3:3577758-3577777 None:intergenic 30.0%
! GAAAAACTGCATCGATATTA+TGG - chr1_3:3577777-3577796 None:intergenic 30.0%
GAACACTTGAATCAATAGTT+AGG + chr1_3:3577797-3577816 Msa0097730:intron 30.0%
TAAACATAACCTGACAAAGT+TGG + chr1_3:3577827-3577846 Msa0097730:intron 30.0%
TATCATCAAAGAAGCTTTCA+AGG - chr1_3:3578216-3578235 None:intergenic 30.0%
! TTGAAAGCTTCTTTGATGAT+AGG + chr1_3:3578215-3578234 Msa0097730:intron 30.0%
! TGAAAGCTTCTTTGATGATA+GGG + chr1_3:3578216-3578235 Msa0097730:intron 30.0%
AACTAACAAAAGACACGTTT+AGG - chr1_3:3578288-3578307 None:intergenic 30.0%
! GTGTCTTTTGTTAGTTAGTT+TGG + chr1_3:3578292-3578311 Msa0097730:intron 30.0%
CCCTAAATGTATCGAAATTA+TGG - chr1_3:3578351-3578370 None:intergenic 30.0%
! AAACGAGTAAACAGTCATTT+TGG - chr1_3:3578400-3578419 None:intergenic 30.0%
TCTAAGCTGTAATTAGCAAA+TGG - chr1_3:3578579-3578598 None:intergenic 30.0%
ACAGCTGCATTTAATTCATA+GGG + chr1_3:3578598-3578617 Msa0097730:intron 30.0%
!! TTTTTCAACTCAACCAAAAG+TGG - chr1_3:3578664-3578683 None:intergenic 30.0%
GAAAAAAATTGCCCTTAGTA+AGG + chr1_3:3578678-3578697 Msa0097730:intron 30.0%
!!! TTTTTAACTTCTTGGCAGAT+AGG + chr1_3:3578769-3578788 Msa0097730:intron 30.0%
TGTACCTCAAAAAGTTCAAA+GGG - chr1_3:3578958-3578977 None:intergenic 30.0%
ATGTACCTCAAAAAGTTCAA+AGG - chr1_3:3578959-3578978 None:intergenic 30.0%
AACGATCGATTAAATGTTCA+AGG + chr1_3:3579126-3579145 Msa0097730:exon 30.0%
AACTGTAATGTATATGCATC+AGG + chr1_3:3579149-3579168 Msa0097730:three_prime_UTR 30.0%
GATACAAAGAGATTTAGCTA+TGG - chr1_3:3579185-3579204 None:intergenic 30.0%
TCGTAAAGATAAACGTTAAG+TGG - chr1_3:3579442-3579461 None:intergenic 30.0%
TGAAATGTGACGATATTAGA+AGG + chr1_3:3579471-3579490 Msa0097730:three_prime_UTR 30.0%
TTTGAAAACATGGCTCCAAA+AGG - chr1_3:3576296-3576315 None:intergenic 35.0%
GGTTGAAGAGTTTGAAAACA+TGG - chr1_3:3576306-3576325 None:intergenic 35.0%
TGATCATTGGCAAAAGAAGA+GGG - chr1_3:3576473-3576492 None:intergenic 35.0%
TTGATCATTGGCAAAAGAAG+AGG - chr1_3:3576474-3576493 None:intergenic 35.0%
!!! AACTGTTTTTGTTGGTGACA+AGG + chr1_3:3576493-3576512 Msa0097730:CDS 35.0%
AACTGAATAACACCCTCTAA+TGG - chr1_3:3576524-3576543 None:intergenic 35.0%
ATACGAGATGAAGAGTTGTT+TGG - chr1_3:3576554-3576573 None:intergenic 35.0%
CATCTCGTATTGAAAAATGG+GGG + chr1_3:3576564-3576583 Msa0097730:CDS 35.0%
CCAAACATACCAGCTATAAA+AGG - chr1_3:3576834-3576853 None:intergenic 35.0%
! CCTTTTATAGCTGGTATGTT+TGG + chr1_3:3576831-3576850 Msa0097730:intron 35.0%
GTGAAGAGTTGCAATCAAAT+AGG + chr1_3:3576926-3576945 Msa0097730:intron 35.0%
TGTCGGATATTGATATGTGT+CGG - chr1_3:3577017-3577036 None:intergenic 35.0%
TAACTGTAAAATGTCGGTGT+CGG - chr1_3:3577034-3577053 None:intergenic 35.0%
!!! GACCTGTTTTTAAAACCTTG+TGG + chr1_3:3577204-3577223 Msa0097730:intron 35.0%
!!! AGCCACAAGGTTTTAAAAAC+AGG - chr1_3:3577209-3577228 None:intergenic 35.0%
ACAAAAATGTTCAAGCCACA+AGG - chr1_3:3577222-3577241 None:intergenic 35.0%
!!! TTTTTAGGTGCTTACTTCCT+TGG + chr1_3:3577311-3577330 Msa0097730:CDS 35.0%
!! TTGGAGGTTTTAGTGAAGAT+GGG + chr1_3:3577330-3577349 Msa0097730:CDS 35.0%
TCATTGCTACTGCAAAATCA+TGG + chr1_3:3577381-3577400 Msa0097730:CDS 35.0%
CATTGCTACTGCAAAATCAT+GGG + chr1_3:3577382-3577401 Msa0097730:CDS 35.0%
AAGAAGCCATTCAACTTACA+GGG - chr1_3:3577418-3577437 None:intergenic 35.0%
TAAGAAGCCATTCAACTTAC+AGG - chr1_3:3577419-3577438 None:intergenic 35.0%
GTGAAGCTTATTGCATTACT+TGG + chr1_3:3577440-3577459 Msa0097730:intron 35.0%
AAGATAGTTAGTCGTGTCAT+GGG - chr1_3:3577863-3577882 None:intergenic 35.0%
AAAGATAGTTAGTCGTGTCA+TGG - chr1_3:3577864-3577883 None:intergenic 35.0%
GACAGCTGCATTTAATTCAT+AGG + chr1_3:3578597-3578616 Msa0097730:intron 35.0%
!!! TTGAACTTTGAGACCACTTT+TGG + chr1_3:3578648-3578667 Msa0097730:intron 35.0%
GCAGATAGGAATTGCAATAA+GGG + chr1_3:3578783-3578802 Msa0097730:intron 35.0%
CAAAACCATAGTTAGGCAAA+TGG - chr1_3:3578822-3578841 None:intergenic 35.0%
!! GGTTTTGTATTAGTGAGTCT+TGG + chr1_3:3578835-3578854 Msa0097730:CDS 35.0%
ACTATTGTCAACTGGAAGAA+CGG - chr1_3:3578905-3578924 None:intergenic 35.0%
CTCTTCTTACTATTGTCAAC+TGG - chr1_3:3578913-3578932 None:intergenic 35.0%
! AAGTCCCTTTGAACTTTTTG+AGG + chr1_3:3578951-3578970 Msa0097730:CDS 35.0%
AGCTTCTCACATCATTAGTA+CGG + chr1_3:3579096-3579115 Msa0097730:intron 35.0%
TAGCAGATCATAGTGCAAAT+GGG - chr1_3:3579339-3579358 None:intergenic 35.0%
! TCAGATCACATGATGATGAA+AGG + chr1_3:3579382-3579401 Msa0097730:three_prime_UTR 35.0%
! AGCCATATCCAATCTCCTTT+TGG + chr1_3:3576278-3576297 Msa0097730:CDS 40.0%
CTCCAAAAGGAGATTGGATA+TGG - chr1_3:3576283-3576302 None:intergenic 40.0%
! CTTCTGGTGTTGAATTTAGG+TGG - chr1_3:3576374-3576393 None:intergenic 40.0%
! GTGCTTCTGGTGTTGAATTT+AGG - chr1_3:3576377-3576396 None:intergenic 40.0%
AAGATGCAAGGGTCTAATGA+AGG - chr1_3:3576399-3576418 None:intergenic 40.0%
TTGGCTAGTGTAAGATGCAA+GGG - chr1_3:3576410-3576429 None:intergenic 40.0%
TTTGGCTAGTGTAAGATGCA+AGG - chr1_3:3576411-3576430 None:intergenic 40.0%
GTCTATGTTTCCTTCAGCTT+TGG - chr1_3:3576429-3576448 None:intergenic 40.0%
!! GCAAAAGAAGAGGGTTTTGT+AGG - chr1_3:3576464-3576483 None:intergenic 40.0%
TGACAAGGATGTTCCATTAG+AGG + chr1_3:3576508-3576527 Msa0097730:CDS 40.0%
GACAAGGATGTTCCATTAGA+GGG + chr1_3:3576509-3576528 Msa0097730:CDS 40.0%
!!! GAGGGTTGTTGTTTTGTTGT+AGG + chr1_3:3576694-3576713 Msa0097730:intron 40.0%
! ACTGCTGATCCTTTTATAGC+TGG + chr1_3:3576822-3576841 Msa0097730:CDS 40.0%
GAATGCATGTCTAGCATGTT+TGG + chr1_3:3576988-3577007 Msa0097730:intron 40.0%
GCACCACCATTTCATATTGA+AGG + chr1_3:3577081-3577100 Msa0097730:intron 40.0%
CATCTTCACTAAAACCTCCA+AGG - chr1_3:3577331-3577350 None:intergenic 40.0%
!! CTTGGAGGTTTTAGTGAAGA+TGG + chr1_3:3577329-3577348 Msa0097730:CDS 40.0%
ACACAGCTACACTAATGCTA+GGG - chr1_3:3577500-3577519 None:intergenic 40.0%
AACACAGCTACACTAATGCT+AGG - chr1_3:3577501-3577520 None:intergenic 40.0%
AGATAGTTAGTCGTGTCATG+GGG - chr1_3:3577862-3577881 None:intergenic 40.0%
!!! AACAGCATGCTGATTTTTGC+AGG + chr1_3:3577941-3577960 Msa0097730:intron 40.0%
TTTCTCTCGCTTCAATTGTG+TGG - chr1_3:3578176-3578195 None:intergenic 40.0%
! CATAAATATGTGAGGCGTTC+AGG - chr1_3:3578375-3578394 None:intergenic 40.0%
CAACATGTCACCCTTACTAA+GGG - chr1_3:3578692-3578711 None:intergenic 40.0%
ACAACATGTCACCCTTACTA+AGG - chr1_3:3578693-3578712 None:intergenic 40.0%
! TCAGTTTTCAGCAAGATCAC+TGG - chr1_3:3578728-3578747 None:intergenic 40.0%
GGCAGATAGGAATTGCAATA+AGG + chr1_3:3578782-3578801 Msa0097730:intron 40.0%
TTCTCACATCATTAGTACGG+CGG + chr1_3:3579099-3579118 Msa0097730:CDS 40.0%
CTAGCAGATCATAGTGCAAA+TGG - chr1_3:3579340-3579359 None:intergenic 40.0%
CATTTGCACTATGATCTGCT+AGG + chr1_3:3579338-3579357 Msa0097730:three_prime_UTR 40.0%
! GATCACATGATGATGAAAGG+AGG + chr1_3:3579385-3579404 Msa0097730:three_prime_UTR 40.0%
ACATGGCTCCAAAAGGAGAT+TGG - chr1_3:3576289-3576308 None:intergenic 45.0%
CTTACACTAGCCAAAGCTGA+AGG + chr1_3:3576416-3576435 Msa0097730:CDS 45.0%
GTTTGTATGCACGTCTGTGT+TGG + chr1_3:3577107-3577126 Msa0097730:intron 45.0%
CAGGTCTGCAACATCAATCT+CGG - chr1_3:3577190-3577209 None:intergenic 45.0%
GTTGGATGTGTTTCAATGGG+TGG + chr1_3:3577280-3577299 Msa0097730:intron 45.0%
ATGTGTTTCAATGGGTGGCA+GGG + chr1_3:3577285-3577304 Msa0097730:intron 45.0%
TTAGGTGCTTACTTCCTTGG+AGG + chr1_3:3577314-3577333 Msa0097730:CDS 45.0%
GGAATGAATGGTCTACCCAA+AGG + chr1_3:3577356-3577375 Msa0097730:CDS 45.0%
! ACTGCAAAATCATGGGCTGT+AGG + chr1_3:3577389-3577408 Msa0097730:CDS 45.0%
! CTGCAAAATCATGGGCTGTA+GGG + chr1_3:3577390-3577409 Msa0097730:CDS 45.0%
! AGGGATCCCTGTAAGTTGAA+TGG + chr1_3:3577409-3577428 Msa0097730:intron 45.0%
CCTTTGTTGCCAACTTTGTC+AGG - chr1_3:3577839-3577858 None:intergenic 45.0%
CCTGACAAAGTTGGCAACAA+AGG + chr1_3:3577836-3577855 Msa0097730:intron 45.0%
! GCAGGCCTAAAAGCTCTTTT+AGG + chr1_3:3577959-3577978 Msa0097730:intron 45.0%
! TTGATGATAGGGTCTTGTGC+AGG + chr1_3:3578227-3578246 Msa0097730:intron 45.0%
GCAATAAGGGCAGCAAAATC+AGG + chr1_3:3578796-3578815 Msa0097730:CDS 45.0%
TCAGGCCATTTGCCTAACTA+TGG + chr1_3:3578814-3578833 Msa0097730:CDS 45.0%
AAAGTTCAAAGGGACTTCCG+CGG - chr1_3:3578948-3578967 None:intergenic 45.0%
!! GGGTCTAATGAAGGTGCTTC+TGG - chr1_3:3576390-3576409 None:intergenic 50.0%
! GTTTGCTGGTGGTGATGTGT+TGG + chr1_3:3576728-3576747 Msa0097730:CDS 50.0%
! AAATGGGCTCATGCAGCCTT+AGG + chr1_3:3577053-3577072 Msa0097730:intron 50.0%
! AATGGGCTCATGCAGCCTTA+GGG + chr1_3:3577054-3577073 Msa0097730:intron 50.0%
!! AATGGTGGTGCTACACCCTA+AGG - chr1_3:3577072-3577091 None:intergenic 50.0%
GATGTGTTTCAATGGGTGGC+AGG + chr1_3:3577284-3577303 Msa0097730:intron 50.0%
!! GGTTTTAGTGAAGATGGGCG+TGG + chr1_3:3577335-3577354 Msa0097730:CDS 50.0%
GAAGATGGGCGTGGAATGAA+TGG + chr1_3:3577344-3577363 Msa0097730:CDS 50.0%
GCAGTAGCAATGACGCCTTT+GGG - chr1_3:3577374-3577393 None:intergenic 50.0%
TGCAGTAGCAATGACGCCTT+TGG - chr1_3:3577375-3577394 None:intergenic 50.0%
AAGAGTGATGTCTATCGCCG+CGG + chr1_3:3578928-3578947 Msa0097730:CDS 50.0%
TCACATCATTAGTACGGCGG+TGG + chr1_3:3579102-3579121 Msa0097730:CDS 50.0%
! AGGCGTGTAGCTCTGTTTGC+TGG + chr1_3:3576714-3576733 Msa0097730:intron 55.0%
! CGTGTAGCTCTGTTTGCTGG+TGG + chr1_3:3576717-3576736 Msa0097730:CDS 55.0%
TGTTTCAATGGGTGGCAGGG+TGG + chr1_3:3577288-3577307 Msa0097730:intron 55.0%
! TGGGTGGCAGGGTGGTTTTT+AGG + chr1_3:3577296-3577315 Msa0097730:intron 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 3576176 3579515 3576176 ID=Msa0097730;Name=Msa0097730
chr1_3 mRNA 3576176 3579515 3576176 ID=Msa0097730-mRNA-1;Parent=Msa0097730;Name=Msa0097730-mRNA-1;_AED=0.02;_eAED=0.02;_QI=90|1|1|1|0.75|0.8|5|388|258
chr1_3 exon 3576176 3576585 3576176 ID=Msa0097730-mRNA-1:exon:1057;Parent=Msa0097730-mRNA-1
chr1_3 exon 3576716 3576843 3576716 ID=Msa0097730-mRNA-1:exon:1058;Parent=Msa0097730-mRNA-1
chr1_3 exon 3577306 3577418 3577306 ID=Msa0097730-mRNA-1:exon:1059;Parent=Msa0097730-mRNA-1
chr1_3 exon 3578787 3578972 3578787 ID=Msa0097730-mRNA-1:exon:1060;Parent=Msa0097730-mRNA-1
chr1_3 exon 3579098 3579515 3579098 ID=Msa0097730-mRNA-1:exon:1061;Parent=Msa0097730-mRNA-1
chr1_3 five_prime_UTR 3576176 3576265 3576176 ID=Msa0097730-mRNA-1:five_prime_utr;Parent=Msa0097730-mRNA-1
chr1_3 CDS 3576266 3576585 3576266 ID=Msa0097730-mRNA-1:cds;Parent=Msa0097730-mRNA-1
chr1_3 CDS 3576716 3576843 3576716 ID=Msa0097730-mRNA-1:cds;Parent=Msa0097730-mRNA-1
chr1_3 CDS 3577306 3577418 3577306 ID=Msa0097730-mRNA-1:cds;Parent=Msa0097730-mRNA-1
chr1_3 CDS 3578787 3578972 3578787 ID=Msa0097730-mRNA-1:cds;Parent=Msa0097730-mRNA-1
chr1_3 CDS 3579098 3579127 3579098 ID=Msa0097730-mRNA-1:cds;Parent=Msa0097730-mRNA-1
chr1_3 three_prime_UTR 3579128 3579515 3579128 ID=Msa0097730-mRNA-1:three_prime_utr;Parent=Msa0097730-mRNA-1
Gene Sequence

>Msa0097730

ATGATACTTGTTAGCCATATCCAATCTCCTTTTGGAGCCATGTTTTCAAACTCTTCAACCAAATTCATCACTTCAATCTCTCCACAACAATTCTCCATTAATCAACCACCTAAATTCAACACCAGAAGCACCTTCATTAGACCCTTGCATCTTACACTAGCCAAAGCTGAAGGAAACATAGACTCATCATCTTCACCTACAAAACCCTCTTCTTTTGCCAATGATCAAACTGTTTTTGTTGGTGACAAGGATGTTCCATTAGAGGGTGTTATTCAGTTTGACAAACCAAACAACTCTTCATCTCGTATTGAAAAATGGGGGCGTGTAGCTCTGTTTGCTGGTGGTGATGTGTTGGCTTTGCTTTTGTTTTCAACAATTGGAAGATATAGTCATGGACTGTCTGTTTTTGACTTTGAGACTCTGCACACTGCTGATCCTTTTATAGCTGGGTGGTTTTTAGGTGCTTACTTCCTTGGAGGTTTTAGTGAAGATGGGCGTGGAATGAATGGTCTACCCAAAGGCGTCATTGCTACTGCAAAATCATGGGCTGTAGGGATCCCTATAGGAATTGCAATAAGGGCAGCAAAATCAGGCCATTTGCCTAACTATGGTTTTGTATTAGTGAGTCTTGGAAGCACTGCTGTTTTACTAATCGCAGTCAGAGCTTTATTATACGCCGTTCTTCCAGTTGACAATAGTAAGAAGAGTGATGTCTATCGCCGCGGAAGTCCCTTTGAACTTTTTGAGCTTCTCACATCATTAGTACGGCGGTGGTAA

Protein sequence

>Msa0097730

MILVSHIQSPFGAMFSNSSTKFITSISPQQFSINQPPKFNTRSTFIRPLHLTLAKAEGNIDSSSSPTKPSSFANDQTVFVGDKDVPLEGVIQFDKPNNSSSRIEKWGRVALFAGGDVLALLLFSTIGRYSHGLSVFDFETLHTADPFIAGWFLGAYFLGGFSEDGRGMNGLPKGVIATAKSWAVGIPIGIAIRAAKSGHLPNYGFVLVSLGSTAVLLIAVRALLYAVLPVDNSKKSDVYRRGSPFELFELLTSLVRRW*