AlfalfaGEDB | Msa0309490

M. sativa cultivar zhongmu-4 / Msa0309490

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035
PFAM: PF04755.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0309490	XP_003593055.2	77.959	245	14	2	1	207	1	243	8.77e-124	360

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0309490	sp\|Q9LU85\|PAP4_ARATH	52.151	186	48	2	62	206	56	241	3.55e-60	191

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0309490	0.843131	1.692004e-58	-8.615850e-47
Msa0000610	Msa0309490	0.819604	1.064511e-52	-8.615850e-47
Msa0000800	Msa0309490	-0.801184	1.015019e-48	-8.615850e-47
Msa0001040	Msa0309490	0.821436	4.041105e-53	-8.615850e-47
Msa0001510	Msa0309490	0.910661	1.458706e-82	-8.615850e-47
Msa0001540	Msa0309490	0.827321	1.669254e-54	-8.615850e-47
Msa0002110	Msa0309490	0.849019	4.229289e-60	-8.615850e-47
Msa0002690	Msa0309490	0.903601	2.931203e-79	-8.615850e-47
Msa0002700	Msa0309490	0.891331	4.378843e-74	-8.615850e-47
Msa0003340	Msa0309490	0.846396	2.230518e-59	-8.615850e-47

Showing 1 to 10 of 3,207 entries

Previous1 2 3 4 5…321Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0309490	MtrunA17_Chr2g0278051	77.959	245	14	2	1	207	1	243	8.07e-128	360
Msa0309490	MtrunA17_Chr2g0278261	51.256	199	56	3	49	206	49	247	5.75e-62	193

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0309490	AT3G26070.1	52.151	186	48	2	62	206	56	241	3.61e-61	191
Msa0309490	AT3G26080.1	47.917	192	60	3	55	206	42	233	2.89e-52	168
Msa0309490	AT3G26080.2	41.629	221	60	4	55	206	42	262	5.43e-46	153

Showing 1 to 3 of 3 entries

Previous1Next

Find 66 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGTTCATCTTGAAAA+TGG	0.247984	2_4:+4003066	Msa0309490:CDS
AAAGAGTGAAGTAGAAGATA+AGG	0.481353	2_4:-4000068	None:intergenic
AAATGGTGGATCCATCTTAC+CGG	0.426574	2_4:+4003083	Msa0309490:CDS
AAATTTGATACCTTCAAAAT+TGG	0.195834	2_4:+4002090	Msa0309490:CDS
AACGATTTAAACTCACCTAA+TGG	0.414557	2_4:+4000045	Msa0309490:exon
AAGAAAACACAACAGTGATA+AGG	0.521202	2_4:-4003144	None:intergenic
AAGAAGATAGTGGTGAATGG+AGG	0.568929	2_4:-4000132	None:intergenic
AAGGCTCCTGACACAGCTCG+TGG	0.649152	2_4:+4002836	Msa0309490:CDS
AAGTAGAAGATAAGGCCATT+AGG	0.430468	2_4:-4000060	None:intergenic
AATAAGAAGATAGTGGTGAA+TGG	0.489559	2_4:-4000135	None:intergenic

Showing 1 to 10 of 66 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTGAGTTTAAATCGTTTGTT+TGG	-	chr2_4:4000041-4000060	None:intergenic	30.0%
AACGATTTAAACTCACCTAA+TGG	+	chr2_4:4000045-4000064	Msa0309490:exon	30.0%
AAAGAGTGAAGTAGAAGATA+AGG	-	chr2_4:4000071-4000090	None:intergenic	30.0%
TTGCTACTATCTCACAAAAA+TGG	+	chr2_4:4000212-4000231	Msa0309490:CDS	30.0%
ATGAAATGTTGCAGAAAACA+AGG	-	chr2_4:4000393-4000412	None:intergenic	30.0%
CTAGTTTACTTGATGGAAAA+TGG	+	chr2_4:4000513-4000532	Msa0309490:intron	30.0%
ATTTGCAACTTATAGCACAA+GGG	-	chr2_4:4000675-4000694	None:intergenic	30.0%
TATTTGCAACTTATAGCACA+AGG	-	chr2_4:4000676-4000695	None:intergenic	30.0%
GACTTATTTCATCTCATCTA+CGG	-	chr2_4:4000920-4000939	None:intergenic	30.0%
GTTTGAATGAAATCCAAAAC+AGG	-	chr2_4:4001661-4001680	None:intergenic	30.0%

Showing 1 to 10 of 206 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
chr2_4	gene	4000022	4003552	4000022	ID=Msa0309490;Name=Msa0309490
chr2_4	mRNA	4000022	4003552	4000022	ID=Msa0309490-mRNA-1;Parent=Msa0309490;Name=Msa0309490-mRNA-1;_AED=0.28;_eAED=0.28;_QI=42\|0.75\|1\|1\|1\|1\|5\|435\|207
chr2_4	exon	4000022	4000375	4000022	ID=Msa0309490-mRNA-1:exon:1365;Parent=Msa0309490-mRNA-1
chr2_4	exon	4001858	4001953	4001858	ID=Msa0309490-mRNA-1:exon:1366;Parent=Msa0309490-mRNA-1
chr2_4	exon	4002045	4002119	4002045	ID=Msa0309490-mRNA-1:exon:1367;Parent=Msa0309490-mRNA-1
chr2_4	exon	4002827	4002894	4002827	ID=Msa0309490-mRNA-1:exon:1368;Parent=Msa0309490-mRNA-1
chr2_4	exon	4003045	4003552	4003045	ID=Msa0309490-mRNA-1:exon:1369;Parent=Msa0309490-mRNA-1
chr2_4	five_prime_UTR	4000022	4000063	4000022	ID=Msa0309490-mRNA-1:five_prime_utr;Parent=Msa0309490-mRNA-1
chr2_4	CDS	4000064	4000375	4000064	ID=Msa0309490-mRNA-1:cds;Parent=Msa0309490-mRNA-1
chr2_4	CDS	4001858	4001953	4001858	ID=Msa0309490-mRNA-1:cds;Parent=Msa0309490-mRNA-1
chr2_4	CDS	4002045	4002119	4002045	ID=Msa0309490-mRNA-1:cds;Parent=Msa0309490-mRNA-1
chr2_4	CDS	4002827	4002894	4002827	ID=Msa0309490-mRNA-1:cds;Parent=Msa0309490-mRNA-1
chr2_4	CDS	4003045	4003117	4003045	ID=Msa0309490-mRNA-1:cds;Parent=Msa0309490-mRNA-1
chr2_4	three_prime_UTR	4003118	4003552	4003118	ID=Msa0309490-mRNA-1:three_prime_utr;Parent=Msa0309490-mRNA-1

Gene Sequence

>Msa0309490

ATGGCCTTATCTTCTACTTCACTCTTTTCACCTCTCAACACCACAAATCATTCACATCATAAACTACTCCTCCATTCACCACTATCTTCTTATTCTTATTCTTCTTCTCACTTTCTAATCACACCCCTCATCTACCACAATCACAACCTTGCTACTATCTCACAAAAATGGAGAACAAATGTTTCATTTTTCCCTGCAATCTTTAAGAAAGGCAAAGATGCAAACACCATTAAAGAAGAACTTCTTGATGCCATTGCATCACTTGATCGAGGAGCTGATGCCACTCCTGAAGACCAACAAAGGGTTGATCAGAGACCAAAGTTTTTGAGATCAGTAACAAATTATCAAGCAATCAATGCTGACACTCTCAGGGCCCAAAATATGGAATCTGGACCGTTCTTCAACCAGGTGACAGCAGATTTAACACCTCTAAATGCAAAGAAAGTGGCTGTGAAATTTGATACCTTCAAAATTGGAGGCTTAATACCTGTCAAGGCTCCTGACACAGCTCGTGGTGAACTTGAAATAACATATTTGGATGAAGAACTGAGGGTATCAAGAGGTGACAAAGGAAACTTGTTCATCTTGAAAATGGTGGATCCATCTTACCGGGTTCCTGCATGA

Protein sequence

>Msa0309490

MALSSTSLFSPLNTTNHSHHKLLLHSPLSSYSYSSSHFLITPLIYHNHNLATISQKWRTNVSFFPAIFKKGKDANTIKEELLDAIASLDRGADATPEDQQRVDQRPKFLRSVTNYQAINADTLRAQNMESGPFFNQVTADLTPLNAKKVAVKFDTFKIGGLIPVKAPDTARGELEITYLDEELRVSRGDKGNLFILKMVDPSYRVPA*