AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0309490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0309490 MtrunA17_Chr2g0278051 77.959 245 14 2 1 207 1 243 8.07e-128 360
Msa0309490 MtrunA17_Chr2g0278261 51.256 199 56 3 49 206 49 247 5.75e-62 193
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0309490 AT3G26070.1 52.151 186 48 2 62 206 56 241 3.61e-61 191
Msa0309490 AT3G26080.1 47.917 192 60 3 55 206 42 233 2.89e-52 168
Msa0309490 AT3G26080.2 41.629 221 60 4 55 206 42 262 5.43e-46 153

Find 66 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGCTAACTTGAAGCATTT+TGG 0.105595 2_4:+4003253 Msa0309490:three_prime_UTR
AAATTTGATACCTTCAAAAT+TGG 0.195834 2_4:+4002090 Msa0309490:CDS
ATCAAGAAGTTCTTCTTTAA+TGG 0.206372 2_4:-4000290 None:intergenic
GCCACTTTCTTTGCATTTAG+AGG 0.223580 2_4:-4002063 None:intergenic
TCAACCCTTTGTTGGTCTTC+AGG 0.234480 2_4:-4000349 None:intergenic
CACTCTCAGGGCCCAAAATA+TGG 0.237918 2_4:+4001908 Msa0309490:CDS
AAACTTGTTCATCTTGAAAA+TGG 0.247984 2_4:+4003066 Msa0309490:CDS
ACGGTCCAGATTCCATATTT+TGG 0.250687 2_4:-4001920 None:intergenic
TGAACTTGAAATAACATATT+TGG 0.312424 2_4:+4002859 Msa0309490:CDS
TTGCCTTTCTTAAAGATTGC+AGG 0.324447 2_4:-4000256 None:intergenic
ATCGTTTGTTTGGTTTGGTT+TGG 0.348834 2_4:-4000028 None:intergenic
TTTAAATCGTTTGTTTGGTT+TGG 0.352423 2_4:-4000033 None:intergenic
CAATCAATGCTGACACTCTC+AGG 0.359671 2_4:+4001895 Msa0309490:CDS
AATGAATATAATAATGTAAT+GGG 0.376709 2_4:+4003328 Msa0309490:three_prime_UTR
GTGAGTTTAAATCGTTTGTT+TGG 0.379679 2_4:-4000038 None:intergenic
AGGGCCCAAAATATGGAATC+TGG 0.402604 2_4:+4001915 Msa0309490:CDS
TGCCTCCAGAGCAAAGCTTT+AGG 0.407184 2_4:-4003421 None:intergenic
AACGATTTAAACTCACCTAA+TGG 0.414557 2_4:+4000045 Msa0309490:exon
TTTGATACCTTCAAAATTGG+AGG 0.416449 2_4:+4002093 Msa0309490:CDS
CAACCTGATCAACCCTTTGT+TGG 0.421516 2_4:-4000357 None:intergenic
TAGTAGCAAGGTTGTGATTG+TGG 0.421596 2_4:-4000198 None:intergenic
TTCCCTGCAATCTTTAAGAA+AGG 0.424398 2_4:+4000253 Msa0309490:CDS
AAATGGTGGATCCATCTTAC+CGG 0.426574 2_4:+4003083 Msa0309490:CDS
CTTCAAGTTAGCTTGAATAG+TGG 0.427481 2_4:-4003245 None:intergenic
AAGTAGAAGATAAGGCCATT+AGG 0.430468 2_4:-4000060 None:intergenic
TTTATGATGTGAATGATTTG+TGG 0.440863 2_4:-4000104 None:intergenic
AGTTCACCACGAGCTGTGTC+AGG 0.463279 2_4:-4002842 None:intergenic
AGACCAACAAAGGGTTGATC+AGG 0.472264 2_4:+4000354 Msa0309490:CDS
GAATAAGAATAAGAAGATAG+TGG 0.474828 2_4:-4000142 None:intergenic
CACCTAAAGCTTTGCTCTGG+AGG 0.479558 2_4:+4003419 Msa0309490:three_prime_UTR
AAAGAGTGAAGTAGAAGATA+AGG 0.481353 2_4:-4000068 None:intergenic
TATCACCTAAAGCTTTGCTC+TGG 0.481924 2_4:+4003416 Msa0309490:three_prime_UTR
AATAAGAAGATAGTGGTGAA+TGG 0.489559 2_4:-4000135 None:intergenic
TGCCTTTCTTAAAGATTGCA+GGG 0.492269 2_4:-4000255 None:intergenic
GAATGAATATAATAATGTAA+TGG 0.492853 2_4:+4003327 Msa0309490:three_prime_UTR
CATGCAGGAACCCGGTAAGA+TGG 0.494136 2_4:-4003094 None:intergenic
CGACTTCAGAAAGCGCTGAC+GGG 0.508365 2_4:-4003188 None:intergenic
ACCTCTAAATGCAAAGAAAG+TGG 0.508669 2_4:+4002062 Msa0309490:CDS
CTTGTTCATCTTGAAAATGG+TGG 0.510401 2_4:+4003069 Msa0309490:CDS
CCTTTGTTGGTCTTCAGGAG+TGG 0.511583 2_4:-4000344 None:intergenic
TCGACTTCAGAAAGCGCTGA+CGG 0.520533 2_4:-4003189 None:intergenic
AAGAAAACACAACAGTGATA+AGG 0.521202 2_4:-4003144 None:intergenic
GGGTTTATTTCTCTTGAATG+TGG 0.527364 2_4:+4003349 Msa0309490:three_prime_UTR
ATCTGGACCGTTCTTCAACC+AGG 0.530767 2_4:+4001932 Msa0309490:CDS
GCTGTGTCAGGAGCCTTGAC+AGG 0.549937 2_4:-4002830 None:intergenic
CACTCCTGAAGACCAACAAA+GGG 0.562257 2_4:+4000345 Msa0309490:CDS
TCCTCGATCAAGTGATGCAA+TGG 0.566938 2_4:-4000314 None:intergenic
AAGAAGATAGTGGTGAATGG+AGG 0.568929 2_4:-4000132 None:intergenic
CAGTATATCATGCAGGAACC+CGG 0.569836 2_4:-4003102 None:intergenic
GGTTGTGATTGTGGTAGATG+AGG 0.590635 2_4:-4000189 None:intergenic
AATCAATGCTGACACTCTCA+GGG 0.592341 2_4:+4001896 Msa0309490:CDS
CCACTCCTGAAGACCAACAA+AGG 0.595548 2_4:+4000344 Msa0309490:CDS
AATGGTGGATCCATCTTACC+GGG 0.603396 2_4:+4003084 Msa0309490:CDS
ATAATGACAGTATATCATGC+AGG 0.622717 2_4:-4003109 None:intergenic
GTTGTGATTGTGGTAGATGA+GGG 0.623766 2_4:-4000188 None:intergenic
TGTGTCACCTGGTTGAAGAA+CGG 0.624616 2_4:-4001939 None:intergenic
ACATTTGCAGATACCTGTCA+AGG 0.625872 2_4:+4002817 Msa0309490:intron
TAATTTGACAGGGTATCAAG+AGG 0.636818 2_4:+4003034 Msa0309490:intron
AGGGTATCAAGAGGTGACAA+AGG 0.637311 2_4:+4003043 Msa0309490:intron
GAATGATTTGTGGTGTTGAG+AGG 0.643015 2_4:-4000094 None:intergenic
CTCGAGTGAACTGTTAATTG+AGG 0.645432 2_4:-4003526 None:intergenic
ATGAATATAATAATGTAATG+GGG 0.645736 2_4:+4003329 Msa0309490:three_prime_UTR
AAGGCTCCTGACACAGCTCG+TGG 0.649152 2_4:+4002836 Msa0309490:CDS
GCCATTGCATCACTTGATCG+AGG 0.654824 2_4:+4000313 Msa0309490:CDS
TTGTGATTGTGGTAGATGAG+GGG 0.690034 2_4:-4000187 None:intergenic
CATATTTGGATGAAGAACTG+AGG 0.704904 2_4:+4002873 Msa0309490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAATATAATAATGTAAT+GGG + chr2_4:4003328-4003347 Msa0309490:three_prime_UTR 10.0%
!! TAACAAGATAAAAATAGAAA+AGG + chr2_4:4000760-4000779 Msa0309490:intron 15.0%
!!! TTCTGAAAATAAGATAAAAA+TGG + chr2_4:4000831-4000850 Msa0309490:intron 15.0%
!! TTAGATTTGATATGATAAAT+TGG + chr2_4:4001217-4001236 Msa0309490:intron 15.0%
!! TATTTATACTCATATAATGA+AGG + chr2_4:4001333-4001352 Msa0309490:intron 15.0%
!! ATTTCTACAAATTAATGATT+TGG - chr2_4:4002301-4002320 None:intergenic 15.0%
!! TTAAAAATGAAATTCTATTG+AGG + chr2_4:4002585-4002604 Msa0309490:intron 15.0%
!! GAATGAATATAATAATGTAA+TGG + chr2_4:4003327-4003346 Msa0309490:three_prime_UTR 15.0%
!! ATGAATATAATAATGTAATG+GGG + chr2_4:4003329-4003348 Msa0309490:three_prime_UTR 15.0%
!! TTAAGTAGTTTATCCAAATA+GGG - chr2_4:4000614-4000633 None:intergenic 20.0%
!! ATTAAGTAGTTTATCCAAAT+AGG - chr2_4:4000615-4000634 None:intergenic 20.0%
!! TTGGATAAACTACTTAATTA+AGG + chr2_4:4000617-4000636 Msa0309490:intron 20.0%
!! AATAAGATAAAAATGGCTTA+TGG + chr2_4:4000838-4000857 Msa0309490:intron 20.0%
!! AAATCTAACAAAAAACAAAG+GGG - chr2_4:4001205-4001224 None:intergenic 20.0%
!! CAAATCTAACAAAAAACAAA+GGG - chr2_4:4001206-4001225 None:intergenic 20.0%
!! TCAAATCTAACAAAAAACAA+AGG - chr2_4:4001207-4001226 None:intergenic 20.0%
!! AAAACAAGTATATAGAGTAT+AGG - chr2_4:4001495-4001514 None:intergenic 20.0%
!! GATTTCATTCAAACTTAAAT+AGG + chr2_4:4001667-4001686 Msa0309490:intron 20.0%
!! AAATTTGATACCTTCAAAAT+TGG + chr2_4:4002090-4002109 Msa0309490:CDS 20.0%
!! TATGATGATCAAAGTAATTA+TGG - chr2_4:4002793-4002812 None:intergenic 20.0%
!! TGAACTTGAAATAACATATT+TGG + chr2_4:4002859-4002878 Msa0309490:CDS 20.0%
!! TTTCTCATTATAATTTGACA+GGG + chr2_4:4003024-4003043 Msa0309490:intron 20.0%
! TTTAAATCGTTTGTTTGGTT+TGG - chr2_4:4000036-4000055 None:intergenic 25.0%
! TTTATGATGTGAATGATTTG+TGG - chr2_4:4000107-4000126 None:intergenic 25.0%
! GAATAAGAATAAGAAGATAG+TGG - chr2_4:4000145-4000164 None:intergenic 25.0%
! ATCAAGAAGTTCTTCTTTAA+TGG - chr2_4:4000293-4000312 None:intergenic 25.0%
! TAGTTTACTTGATGGAAAAT+GGG + chr2_4:4000514-4000533 Msa0309490:intron 25.0%
! ATATGGTAAGGAAAAAGAAA+TGG - chr2_4:4000586-4000605 None:intergenic 25.0%
! ATATAGAAGCTGAAAATTAG+AGG - chr2_4:4001413-4001432 None:intergenic 25.0%
!! GATTTACAGTATGTATTTTG+TGG - chr2_4:4001518-4001537 None:intergenic 25.0%
! ACATATGCAAATGTTAGAAT+TGG - chr2_4:4002004-4002023 None:intergenic 25.0%
! TAAACGAATCAATATTCTGT+AGG + chr2_4:4002023-4002042 Msa0309490:intron 25.0%
! TTGTAATATTCTAGATGTGA+TGG + chr2_4:4002166-4002185 Msa0309490:intron 25.0%
!! GTTTCTCTTAAAGTTTTTCT+AGG + chr2_4:4002330-4002349 Msa0309490:intron 25.0%
!!! GTAACATGTATAAGTTTTGT+TGG - chr2_4:4002642-4002661 None:intergenic 25.0%
! ACTGTGGAATTAAATACATA+GGG - chr2_4:4002698-4002717 None:intergenic 25.0%
! AACTGTGGAATTAAATACAT+AGG - chr2_4:4002699-4002718 None:intergenic 25.0%
! GTTTGTTTATATTACTGCAT+TGG + chr2_4:4002915-4002934 Msa0309490:intron 25.0%
! TAATGTCTATATATACCACA+TGG - chr2_4:4002984-4003003 None:intergenic 25.0%
! CTTTCTCATTATAATTTGAC+AGG + chr2_4:4003023-4003042 Msa0309490:intron 25.0%
!! AAACTTGTTCATCTTGAAAA+TGG + chr2_4:4003066-4003085 Msa0309490:CDS 25.0%
!!! TGTTTCAAATTGCTTTTTGT+TGG + chr2_4:4003486-4003505 Msa0309490:three_prime_UTR 25.0%
GTGAGTTTAAATCGTTTGTT+TGG - chr2_4:4000041-4000060 None:intergenic 30.0%
AACGATTTAAACTCACCTAA+TGG + chr2_4:4000045-4000064 Msa0309490:exon 30.0%
AAAGAGTGAAGTAGAAGATA+AGG - chr2_4:4000071-4000090 None:intergenic 30.0%
! AATAAGAAGATAGTGGTGAA+TGG - chr2_4:4000138-4000157 None:intergenic 30.0%
! ATTTTTGTGAGATAGTAGCA+AGG - chr2_4:4000213-4000232 None:intergenic 30.0%
TTGCTACTATCTCACAAAAA+TGG + chr2_4:4000212-4000231 Msa0309490:CDS 30.0%
ATGAAATGTTGCAGAAAACA+AGG - chr2_4:4000393-4000412 None:intergenic 30.0%
CTAGTTTACTTGATGGAAAA+TGG + chr2_4:4000513-4000532 Msa0309490:intron 30.0%
ATTTGCAACTTATAGCACAA+GGG - chr2_4:4000675-4000694 None:intergenic 30.0%
TATTTGCAACTTATAGCACA+AGG - chr2_4:4000676-4000695 None:intergenic 30.0%
GACTTATTTCATCTCATCTA+CGG - chr2_4:4000920-4000939 None:intergenic 30.0%
! TTGTTGCTACTAGCTTAAAT+AGG + chr2_4:4001304-4001323 Msa0309490:intron 30.0%
!! TTAGTCTTGCGAAAATGAAA+GGG - chr2_4:4001451-4001470 None:intergenic 30.0%
!! TTTAGTCTTGCGAAAATGAA+AGG - chr2_4:4001452-4001471 None:intergenic 30.0%
!!! CAACTTTTTTCACTCTGTTT+CGG + chr2_4:4001596-4001615 Msa0309490:intron 30.0%
GTTTGAATGAAATCCAAAAC+AGG - chr2_4:4001661-4001680 None:intergenic 30.0%
! CTGATAATGAATGACCTTAA+AGG + chr2_4:4001760-4001779 Msa0309490:intron 30.0%
AATGACCTTAAAGGTTTACT+TGG + chr2_4:4001769-4001788 Msa0309490:intron 30.0%
ATGACCTTAAAGGTTTACTT+GGG + chr2_4:4001770-4001789 Msa0309490:intron 30.0%
GTTACTGATCTCAAAAACTT+TGG - chr2_4:4001864-4001883 None:intergenic 30.0%
TTTGATACCTTCAAAATTGG+AGG + chr2_4:4002093-4002112 Msa0309490:CDS 30.0%
ATATATCTGACCTCACTTTA+CGG - chr2_4:4002233-4002252 None:intergenic 30.0%
AGAAGAGTAGATATGATGAA+GGG - chr2_4:4002384-4002403 None:intergenic 30.0%
AAGAAGAGTAGATATGATGA+AGG - chr2_4:4002385-4002404 None:intergenic 30.0%
TAGAAAAGAAGGTGAAAACT+TGG - chr2_4:4002453-4002472 None:intergenic 30.0%
!!! TAAGTTTTGTTGGAACTTGT+TGG - chr2_4:4002632-4002651 None:intergenic 30.0%
! AGCAATTTGAAGTTGAGATT+AGG - chr2_4:4002951-4002970 None:intergenic 30.0%
ATAATGACAGTATATCATGC+AGG - chr2_4:4003112-4003131 None:intergenic 30.0%
AAGAAAACACAACAGTGATA+AGG - chr2_4:4003147-4003166 None:intergenic 30.0%
! TTGTGTTTTCTTCCTTTCAA+GGG + chr2_4:4003155-4003174 Msa0309490:three_prime_UTR 30.0%
!! AAGCTAACTTGAAGCATTTT+GGG + chr2_4:4003254-4003273 Msa0309490:three_prime_UTR 30.0%
!! ATCGTTTGTTTGGTTTGGTT+TGG - chr2_4:4000031-4000050 None:intergenic 35.0%
AAGTAGAAGATAAGGCCATT+AGG - chr2_4:4000063-4000082 None:intergenic 35.0%
! TTCCCTGCAATCTTTAAGAA+AGG + chr2_4:4000253-4000272 Msa0309490:CDS 35.0%
TGCCTTTCTTAAAGATTGCA+GGG - chr2_4:4000258-4000277 None:intergenic 35.0%
TTGCCTTTCTTAAAGATTGC+AGG - chr2_4:4000259-4000278 None:intergenic 35.0%
GCAGAAAACAAGGCATATAA+AGG - chr2_4:4000383-4000402 None:intergenic 35.0%
TTGGATTAACTGCTTCAAGT+TGG - chr2_4:4000475-4000494 None:intergenic 35.0%
TCAAGTAAACTAGACTTGAG+AGG - chr2_4:4000506-4000525 None:intergenic 35.0%
! CTCAAGTCTAGTTTACTTGA+TGG + chr2_4:4000506-4000525 Msa0309490:intron 35.0%
TCAGTCAATCTTGCAAACTA+AGG + chr2_4:4000556-4000575 Msa0309490:intron 35.0%
! TCTTTTTCCTTACCATATGC+AGG + chr2_4:4000588-4000607 Msa0309490:intron 35.0%
CTACTTAATTAAGGCCTGTT+TGG + chr2_4:4000626-4000645 Msa0309490:intron 35.0%
AATAAGCTGTTTGTCCAAAC+AGG + chr2_4:4000692-4000711 Msa0309490:intron 35.0%
!! TTTTCAGAAGCTCTCTAAGA+TGG - chr2_4:4000820-4000839 None:intergenic 35.0%
TATGAACTATGAGTCTGTCT+GGG - chr2_4:4000945-4000964 None:intergenic 35.0%
GTCTATGTCAATGCTTCATA+GGG - chr2_4:4000974-4000993 None:intergenic 35.0%
TGTCTATGTCAATGCTTCAT+AGG - chr2_4:4000975-4000994 None:intergenic 35.0%
!! GCACTGACACTTTTAATTGA+AGG - chr2_4:4001068-4001087 None:intergenic 35.0%
ACACGTTTGATGCATCATAA+TGG - chr2_4:4001145-4001164 None:intergenic 35.0%
TAGATGGTTAGTGAAATGAG+TGG - chr2_4:4001275-4001294 None:intergenic 35.0%
GCAACAATGATCAATCTAGA+TGG - chr2_4:4001291-4001310 None:intergenic 35.0%
TAACACTGTCAAAATGTACC+AGG - chr2_4:4001713-4001732 None:intergenic 35.0%
ACCTCTAAATGCAAAGAAAG+TGG + chr2_4:4002062-4002081 Msa0309490:CDS 35.0%
! TACTAAGCCTCCAATTTTGA+AGG - chr2_4:4002103-4002122 None:intergenic 35.0%
TCACTTTACGGGATAAGATT+TGG - chr2_4:4002221-4002240 None:intergenic 35.0%
AAATCTTATCCCGTAAAGTG+AGG + chr2_4:4002220-4002239 Msa0309490:intron 35.0%
TATATCTGACCTCACTTTAC+GGG - chr2_4:4002232-4002251 None:intergenic 35.0%
GTAAAGTGAGGTCAGATATA+TGG + chr2_4:4002232-4002251 Msa0309490:intron 35.0%
AGGATCTATCGTAGAAAAGA+AGG - chr2_4:4002464-4002483 None:intergenic 35.0%
GTGGTAAGACTAGACAATAT+AGG - chr2_4:4002530-4002549 None:intergenic 35.0%
AAGAGATGAGAATGTTGTGT+TGG - chr2_4:4002557-4002576 None:intergenic 35.0%
CAACATTCTCATCTCTTCTT+AGG + chr2_4:4002560-4002579 Msa0309490:intron 35.0%
ACATAGGGAATTGCAGATAA+AGG - chr2_4:4002683-4002702 None:intergenic 35.0%
GAGTATTATGGTACTAACTG+TGG - chr2_4:4002714-4002733 None:intergenic 35.0%
!! TACACACATCAGGAGTATTA+TGG - chr2_4:4002726-4002745 None:intergenic 35.0%
CATATTTGGATGAAGAACTG+AGG + chr2_4:4002873-4002892 Msa0309490:CDS 35.0%
AAGTTGAGATTAGGTACACT+GGG - chr2_4:4002942-4002961 None:intergenic 35.0%
TTGCTTAACTATCAACCATG+TGG + chr2_4:4002966-4002985 Msa0309490:intron 35.0%
! TAATTTGACAGGGTATCAAG+AGG + chr2_4:4003034-4003053 Msa0309490:intron 35.0%
CTTGTTCATCTTGAAAATGG+TGG + chr2_4:4003069-4003088 Msa0309490:CDS 35.0%
! GTTGTGTTTTCTTCCTTTCA+AGG + chr2_4:4003154-4003173 Msa0309490:three_prime_UTR 35.0%
! TGTGTTTTCTTCCTTTCAAG+GGG + chr2_4:4003156-4003175 Msa0309490:three_prime_UTR 35.0%
! CTTCAAGTTAGCTTGAATAG+TGG - chr2_4:4003248-4003267 None:intergenic 35.0%
!! CAAGCTAACTTGAAGCATTT+TGG + chr2_4:4003253-4003272 Msa0309490:three_prime_UTR 35.0%
! GGGTTTATTTCTCTTGAATG+TGG + chr2_4:4003349-4003368 Msa0309490:three_prime_UTR 35.0%
!! TGCTTTTTGTTGGATAAGTG+TGG + chr2_4:4003496-4003515 Msa0309490:three_prime_UTR 35.0%
! GAATGATTTGTGGTGTTGAG+AGG - chr2_4:4000097-4000116 None:intergenic 40.0%
! AAGAAGATAGTGGTGAATGG+AGG - chr2_4:4000135-4000154 None:intergenic 40.0%
TTGTGATTGTGGTAGATGAG+GGG - chr2_4:4000190-4000209 None:intergenic 40.0%
GTTGTGATTGTGGTAGATGA+GGG - chr2_4:4000191-4000210 None:intergenic 40.0%
TAGTAGCAAGGTTGTGATTG+TGG - chr2_4:4000201-4000220 None:intergenic 40.0%
AGTTTGCAAGATTGACTGAG+AGG - chr2_4:4000555-4000574 None:intergenic 40.0%
ATTAAGGCCTGTTTGGACTT+TGG + chr2_4:4000633-4000652 Msa0309490:intron 40.0%
TAGCACAAGGGCTTATGATA+TGG - chr2_4:4000663-4000682 None:intergenic 40.0%
ACTTATGCTATGAGCACTCA+GGG - chr2_4:4000718-4000737 None:intergenic 40.0%
CTTCCATAAGCTCTCTCAAA+CGG + chr2_4:4000876-4000895 Msa0309490:intron 40.0%
CTATGAACTATGAGTCTGTC+TGG - chr2_4:4000946-4000965 None:intergenic 40.0%
CATTGACACATGTCAAACAC+CGG + chr2_4:4001037-4001056 Msa0309490:intron 40.0%
!! CTTTTAATTGAAGGCGTGTC+CGG - chr2_4:4001059-4001078 None:intergenic 40.0%
! AACAAAAAACAAAGGGGCAC+TGG - chr2_4:4001199-4001218 None:intergenic 40.0%
AGCACCCAAGTAAACCTTTA+AGG - chr2_4:4001777-4001796 None:intergenic 40.0%
AATCAATGCTGACACTCTCA+GGG + chr2_4:4001896-4001915 Msa0309490:CDS 40.0%
! CGGTCCAGATTCCATATTTT+GGG - chr2_4:4001922-4001941 None:intergenic 40.0%
! ACGGTCCAGATTCCATATTT+TGG - chr2_4:4001923-4001942 None:intergenic 40.0%
TCAATTTCACTTGTGTCACC+TGG - chr2_4:4001953-4001972 None:intergenic 40.0%
! GCCACTTTCTTTGCATTTAG+AGG - chr2_4:4002066-4002085 None:intergenic 40.0%
CTTTACGGGATAAGATTTGG+TGG - chr2_4:4002218-4002237 None:intergenic 40.0%
AAAACTTGGCTTAGGTGGTT+TGG - chr2_4:4002439-4002458 None:intergenic 40.0%
AGAAGGTGAAAACTTGGCTT+AGG - chr2_4:4002447-4002466 None:intergenic 40.0%
AGAGAGAGATAGAGAGAGTT+GGG - chr2_4:4002489-4002508 None:intergenic 40.0%
TAGAGAGAGATAGAGAGAGT+TGG - chr2_4:4002490-4002509 None:intergenic 40.0%
AGATGAGAATGTTGTGTTGG+CGG - chr2_4:4002554-4002573 None:intergenic 40.0%
! CAGAAGCATATACACACATC+AGG - chr2_4:4002736-4002755 None:intergenic 40.0%
ACATTTGCAGATACCTGTCA+AGG + chr2_4:4002817-4002836 Msa0309490:intron 40.0%
GAAGTTGAGATTAGGTACAC+TGG - chr2_4:4002943-4002962 None:intergenic 40.0%
!! AAATGGTGGATCCATCTTAC+CGG + chr2_4:4003083-4003102 Msa0309490:CDS 40.0%
!!! GGTAGTTTTAACCCCTTGAA+AGG - chr2_4:4003170-4003189 None:intergenic 40.0%
TATCACCTAAAGCTTTGCTC+TGG + chr2_4:4003416-4003435 Msa0309490:three_prime_UTR 40.0%
CTCGAGTGAACTGTTAATTG+AGG - chr2_4:4003529-4003548 None:intergenic 40.0%
GGTTGTGATTGTGGTAGATG+AGG - chr2_4:4000192-4000211 None:intergenic 45.0%
TCCTCGATCAAGTGATGCAA+TGG - chr2_4:4000317-4000336 None:intergenic 45.0%
CACTCCTGAAGACCAACAAA+GGG + chr2_4:4000345-4000364 Msa0309490:CDS 45.0%
!! TCAACCCTTTGTTGGTCTTC+AGG - chr2_4:4000352-4000371 None:intergenic 45.0%
! AGACCAACAAAGGGTTGATC+AGG + chr2_4:4000354-4000373 Msa0309490:CDS 45.0%
CAACCTGATCAACCCTTTGT+TGG - chr2_4:4000360-4000379 None:intergenic 45.0%
AATAGGGCCTGCATATGGTA+AGG - chr2_4:4000598-4000617 None:intergenic 45.0%
TACCATATGCAGGCCCTATT+TGG + chr2_4:4000598-4000617 Msa0309490:intron 45.0%
ATCCAAATAGGGCCTGCATA+TGG - chr2_4:4000603-4000622 None:intergenic 45.0%
TGGCAATCCAAAGTCCAAAC+AGG - chr2_4:4000643-4000662 None:intergenic 45.0%
CACTTATGCTATGAGCACTC+AGG - chr2_4:4000719-4000738 None:intergenic 45.0%
AGACCGTTTGAGAGAGCTTA+TGG - chr2_4:4000882-4000901 None:intergenic 45.0%
CATCTACGGACATAATCACG+TGG - chr2_4:4000906-4000925 None:intergenic 45.0%
CGTGATTAGATGTGTCAGTG+CGG + chr2_4:4001001-4001020 Msa0309490:intron 45.0%
AGGTCTCCTAAACTACCATC+TGG + chr2_4:4001687-4001706 Msa0309490:intron 45.0%
TCAAAATGTACCAGGCCAGA+TGG - chr2_4:4001705-4001724 None:intergenic 45.0%
CAATCAATGCTGACACTCTC+AGG + chr2_4:4001895-4001914 Msa0309490:CDS 45.0%
AGGGCCCAAAATATGGAATC+TGG + chr2_4:4001915-4001934 Msa0309490:CDS 45.0%
TGTGTCACCTGGTTGAAGAA+CGG - chr2_4:4001942-4001961 None:intergenic 45.0%
! GGTGGTTGGTGTATTCGTAT+AGG - chr2_4:4002200-4002219 None:intergenic 45.0%
!! ACGGGATAAGATTTGGTGGT+TGG - chr2_4:4002214-4002233 None:intergenic 45.0%
AGGTGAAAACTTGGCTTAGG+TGG - chr2_4:4002444-4002463 None:intergenic 45.0%
GAGAGAGATAGAGAGAGTTG+GGG - chr2_4:4002488-4002507 None:intergenic 45.0%
! AGGGTATCAAGAGGTGACAA+AGG + chr2_4:4003043-4003062 Msa0309490:intron 45.0%
!! AATGGTGGATCCATCTTACC+GGG + chr2_4:4003084-4003103 Msa0309490:CDS 45.0%
CAGTATATCATGCAGGAACC+CGG - chr2_4:4003105-4003124 None:intergenic 45.0%
GCCATTGCATCACTTGATCG+AGG + chr2_4:4000313-4000332 Msa0309490:CDS 50.0%
!! CCTTTGTTGGTCTTCAGGAG+TGG - chr2_4:4000347-4000366 None:intergenic 50.0%
CCACTCCTGAAGACCAACAA+AGG + chr2_4:4000344-4000363 Msa0309490:CDS 50.0%
! GACTTGAGAGGCTGCTTTGT+TGG - chr2_4:4000494-4000513 None:intergenic 50.0%
AAATCCAAAACAGGCCAGCC+CGG - chr2_4:4001652-4001671 None:intergenic 50.0%
TCCTAAACTACCATCTGGCC+TGG + chr2_4:4001692-4001711 Msa0309490:intron 50.0%
ACCAGGCCAGATGGTAGTTT+AGG - chr2_4:4001696-4001715 None:intergenic 50.0%
CACTCTCAGGGCCCAAAATA+TGG + chr2_4:4001908-4001927 Msa0309490:CDS 50.0%
ATCTGGACCGTTCTTCAACC+AGG + chr2_4:4001932-4001951 Msa0309490:CDS 50.0%
GAGATAGAGAGAGTTGGGGT+AGG - chr2_4:4002484-4002503 None:intergenic 50.0%
! AGAATGTTGTGTTGGCGGTG+TGG - chr2_4:4002549-4002568 None:intergenic 50.0%
!! TCGACTTCAGAAAGCGCTGA+CGG - chr2_4:4003192-4003211 None:intergenic 50.0%
CACCTAAAGCTTTGCTCTGG+AGG + chr2_4:4003419-4003438 Msa0309490:three_prime_UTR 50.0%
TGCCTCCAGAGCAAAGCTTT+AGG - chr2_4:4003424-4003443 None:intergenic 50.0%
ATGAGCACTCAGGGCCTGTT+TGG - chr2_4:4000709-4000728 None:intergenic 55.0%
!! TGAGTTAACTTGCTGCCCGC+CGG + chr2_4:4001624-4001643 Msa0309490:intron 55.0%
AGTTCACCACGAGCTGTGTC+AGG - chr2_4:4002845-4002864 None:intergenic 55.0%
CATGCAGGAACCCGGTAAGA+TGG - chr2_4:4003097-4003116 None:intergenic 55.0%
!! CGACTTCAGAAAGCGCTGAC+GGG - chr2_4:4003191-4003210 None:intergenic 55.0%
GCTGTGTCAGGAGCCTTGAC+AGG - chr2_4:4002833-4002852 None:intergenic 60.0%
AAGGCTCCTGACACAGCTCG+TGG + chr2_4:4002836-4002855 Msa0309490:CDS 60.0%
AAAACAGGCCAGCCCGGCGC+CGG - chr2_4:4001646-4001665 None:intergenic 70.0%
!! AACTTGCTGCCCGCCGGCGC+CGG + chr2_4:4001630-4001649 Msa0309490:intron 75.0%
!!! GGCGCCGGGCTGGCCTGTTT+TGG + chr2_4:4001645-4001664 Msa0309490:intron 75.0%
!! ACTTGCTGCCCGCCGGCGCC+GGG + chr2_4:4001631-4001650 Msa0309490:intron 80.0%
!! ACAGGCCAGCCCGGCGCCGG+CGG - chr2_4:4001643-4001662 None:intergenic 85.0%
!!! CAGGCCAGCCCGGCGCCGGC+GGG - chr2_4:4001642-4001661 None:intergenic 90.0%
!! GCTGCCCGCCGGCGCCGGGC+TGG + chr2_4:4001635-4001654 Msa0309490:intron 95.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 4000022 4003552 4000022 ID=Msa0309490;Name=Msa0309490
chr2_4 mRNA 4000022 4003552 4000022 ID=Msa0309490-mRNA-1;Parent=Msa0309490;Name=Msa0309490-mRNA-1;_AED=0.28;_eAED=0.28;_QI=42|0.75|1|1|1|1|5|435|207
chr2_4 exon 4000022 4000375 4000022 ID=Msa0309490-mRNA-1:exon:1365;Parent=Msa0309490-mRNA-1
chr2_4 exon 4001858 4001953 4001858 ID=Msa0309490-mRNA-1:exon:1366;Parent=Msa0309490-mRNA-1
chr2_4 exon 4002045 4002119 4002045 ID=Msa0309490-mRNA-1:exon:1367;Parent=Msa0309490-mRNA-1
chr2_4 exon 4002827 4002894 4002827 ID=Msa0309490-mRNA-1:exon:1368;Parent=Msa0309490-mRNA-1
chr2_4 exon 4003045 4003552 4003045 ID=Msa0309490-mRNA-1:exon:1369;Parent=Msa0309490-mRNA-1
chr2_4 five_prime_UTR 4000022 4000063 4000022 ID=Msa0309490-mRNA-1:five_prime_utr;Parent=Msa0309490-mRNA-1
chr2_4 CDS 4000064 4000375 4000064 ID=Msa0309490-mRNA-1:cds;Parent=Msa0309490-mRNA-1
chr2_4 CDS 4001858 4001953 4001858 ID=Msa0309490-mRNA-1:cds;Parent=Msa0309490-mRNA-1
chr2_4 CDS 4002045 4002119 4002045 ID=Msa0309490-mRNA-1:cds;Parent=Msa0309490-mRNA-1
chr2_4 CDS 4002827 4002894 4002827 ID=Msa0309490-mRNA-1:cds;Parent=Msa0309490-mRNA-1
chr2_4 CDS 4003045 4003117 4003045 ID=Msa0309490-mRNA-1:cds;Parent=Msa0309490-mRNA-1
chr2_4 three_prime_UTR 4003118 4003552 4003118 ID=Msa0309490-mRNA-1:three_prime_utr;Parent=Msa0309490-mRNA-1
Gene Sequence

>Msa0309490

ATGGCCTTATCTTCTACTTCACTCTTTTCACCTCTCAACACCACAAATCATTCACATCATAAACTACTCCTCCATTCACCACTATCTTCTTATTCTTATTCTTCTTCTCACTTTCTAATCACACCCCTCATCTACCACAATCACAACCTTGCTACTATCTCACAAAAATGGAGAACAAATGTTTCATTTTTCCCTGCAATCTTTAAGAAAGGCAAAGATGCAAACACCATTAAAGAAGAACTTCTTGATGCCATTGCATCACTTGATCGAGGAGCTGATGCCACTCCTGAAGACCAACAAAGGGTTGATCAGAGACCAAAGTTTTTGAGATCAGTAACAAATTATCAAGCAATCAATGCTGACACTCTCAGGGCCCAAAATATGGAATCTGGACCGTTCTTCAACCAGGTGACAGCAGATTTAACACCTCTAAATGCAAAGAAAGTGGCTGTGAAATTTGATACCTTCAAAATTGGAGGCTTAATACCTGTCAAGGCTCCTGACACAGCTCGTGGTGAACTTGAAATAACATATTTGGATGAAGAACTGAGGGTATCAAGAGGTGACAAAGGAAACTTGTTCATCTTGAAAATGGTGGATCCATCTTACCGGGTTCCTGCATGA

Protein sequence

>Msa0309490

MALSSTSLFSPLNTTNHSHHKLLLHSPLSSYSYSSSHFLITPLIYHNHNLATISQKWRTNVSFFPAIFKKGKDANTIKEELLDAIASLDRGADATPEDQQRVDQRPKFLRSVTNYQAINADTLRAQNMESGPFFNQVTADLTPLNAKKVAVKFDTFKIGGLIPVKAPDTARGELEITYLDEELRVSRGDKGNLFILKMVDPSYRVPA*