AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0075860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075860 MtrunA17_Chr1g0184811 90.722 291 7 1 1 271 39 329 0.0 543
Msa0075860 MtrunA17_Chr1g0153971 37.405 262 139 8 14 258 8 261 3.39e-45 153
Msa0075860 MtrunA17_Chr6g0488631 62.500 48 16 1 190 237 422 467 4.33e-14 71.6
Msa0075860 MtrunA17_Chr6g0488631 44.118 68 36 1 190 257 351 416 1.42e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0075860 AT1G47720.1 34.259 216 123 5 60 257 39 253 1.10e-31 118
Msa0075860 AT4G20010.1 33.032 221 117 5 54 246 76 293 2.76e-26 106
Msa0075860 AT4G20010.1 57.692 52 20 1 190 241 310 359 1.75e-12 67.0
Msa0075860 AT4G20010.2 34.389 221 114 6 54 246 76 293 4.63e-26 105
Msa0075860 AT4G20010.2 57.692 52 20 1 190 241 310 359 1.68e-12 67.0
Msa0075860 AT5G44785.2 34.135 208 102 5 66 244 71 272 3.28e-22 95.5
Msa0075860 AT5G44785.2 58.182 55 21 1 190 244 380 432 4.99e-14 72.0
Msa0075860 AT5G44785.1 34.135 208 102 5 66 244 71 272 3.61e-22 95.5
Msa0075860 AT5G44785.1 58.182 55 21 1 190 244 378 430 5.36e-14 71.6
Msa0075860 AT1G31010.1 26.383 235 131 6 60 254 56 288 2.07e-18 84.3

Find 105 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGGATTCATTTGACATTT+TGG 0.051547 1_2:-51465799 Msa0075860:CDS
TTGAATTTGGGGATGAAATT+AGG 0.122392 1_2:+51466073 None:intergenic
ATTTGTAGAACCAAAATTTA+TGG 0.137855 1_2:+51461253 None:intergenic
GGAAACTGGGAGTTTGAATT+TGG 0.179246 1_2:+51466060 None:intergenic
TCCTTGTTCCATGAAATTTC+AGG 0.224276 1_2:+51465944 None:intergenic
GAGAAGAATTGGTGAAAATT+TGG 0.236450 1_2:-51461058 Msa0075860:three_prime_UTR
TGCTTAAAATCAGGAGCTTT+GGG 0.240351 1_2:+51461510 None:intergenic
TGGGGATGAAATTAGGGTTT+TGG 0.282218 1_2:+51466080 None:intergenic
GATACTATTGATTCTCTTGA+TGG 0.293460 1_2:-51465701 Msa0075860:CDS
AACTGCACAAAGAAGTTTCT+AGG 0.297736 1_2:+51461286 None:intergenic
GAAGAGAGTGTTGTGGAAAC+TGG 0.307345 1_2:+51466046 None:intergenic
TGAATTTGGGGATGAAATTA+GGG 0.312987 1_2:+51466074 None:intergenic
GGTCATCAGATTCATGTTTC+CGG 0.314142 1_2:-51465737 Msa0075860:CDS
TTTGTAGAACCAAAATTTAT+GGG 0.327478 1_2:+51461254 None:intergenic
GTGCTTAAAATCAGGAGCTT+TGG 0.338408 1_2:+51461509 None:intergenic
GTATGATGCTGCTCCATTAT+TGG 0.343435 1_2:+51465976 None:intergenic
GAAACTGGGAGTTTGAATTT+GGG 0.346880 1_2:+51466061 None:intergenic
AGCAACTCCGTCAATTTAAT+CGG 0.355879 1_2:-51465917 Msa0075860:CDS
GAAATCAAACACCTTCCTTC+CGG 0.356017 1_2:-51465875 Msa0075860:CDS
AAATCAAACACCTTCCTTCC+GGG 0.357060 1_2:-51465874 Msa0075860:CDS
CAAACAACAAACTTACTATA+AGG 0.360042 1_2:-51465678 Msa0075860:intron
CAGATATTGATACTTTAATC+TGG 0.366821 1_2:-51461127 Msa0075860:three_prime_UTR
CTTCCGGGAAAGTTGTTGCT+TGG 0.369233 1_2:-51465859 Msa0075860:CDS
CTATTGTCCCACCACTCCCC+TGG 0.369869 1_2:+51465026 None:intergenic
AAGAAGTTTCTAGGTTGAAA+TGG 0.372283 1_2:+51461295 None:intergenic
TCCAATTCCATCACCAATAA+TGG 0.379397 1_2:-51465989 Msa0075860:CDS
CAGGGGAGTGGTGGGACAAT+AGG 0.384072 1_2:-51465025 Msa0075860:CDS
TCCATTATTGGTGATGGAAT+TGG 0.384641 1_2:+51465988 None:intergenic
GGGTCTTATACCGGTCAAAA+TGG 0.387486 1_2:-51461399 Msa0075860:CDS
TGTCGTTTCACTCGATGATA+AGG 0.400190 1_2:+51466181 None:intergenic
ACATTACATTGGGCAAGGTT+TGG 0.401166 1_2:+51461319 None:intergenic
GGAACATTGTTTATAGTCTC+TGG 0.405710 1_2:-51461229 Msa0075860:three_prime_UTR
CATGTCTAATATTTCCAGTT+GGG 0.406821 1_2:+51461428 None:intergenic
GTCGTTTCACTCGATGATAA+GGG 0.407257 1_2:+51466182 None:intergenic
TGGTAGGATGCCCGTAGATA+TGG 0.414708 1_2:-51461379 Msa0075860:CDS
AGTCCAAGCAACAACTTTCC+CGG 0.430883 1_2:+51465856 None:intergenic
AGCAGCTGAATTTCATTGAT+AGG 0.434295 1_2:-51465555 Msa0075860:CDS
CCTTGTTCCATGAAATTTCA+GGG 0.435573 1_2:+51465945 None:intergenic
GGAGAAGCTCTGTGGATTGA+TGG 0.439305 1_2:-51461477 Msa0075860:CDS
GAAATTTCTGTGGATTGGTT+TGG 0.442612 1_2:+51466024 None:intergenic
CTGGTTCTGTGGTGGAATTA+TGG 0.451490 1_2:-51465067 Msa0075860:CDS
AAGTTGAAATTTCTGTGGAT+TGG 0.456639 1_2:+51466019 None:intergenic
TTGCCAACCCAGGGGAGTGG+TGG 0.459728 1_2:-51465034 Msa0075860:CDS
GACGAAGCCGATTAAATTGA+CGG 0.460435 1_2:+51465910 None:intergenic
GTATCCTTGTGCTTAAAATC+AGG 0.463490 1_2:+51461501 None:intergenic
CCAGCAAAATTACAATGAAC+GGG 0.464652 1_2:+51461080 None:intergenic
TCCAGTTGGGATTTGACCCA+TGG 0.465033 1_2:+51461441 None:intergenic
ACCATGGGTCAAATCCCAAC+TGG 0.466020 1_2:-51461442 Msa0075860:CDS
CAAGCTTTCTTTGCCAACCC+AGG 0.471812 1_2:-51465044 Msa0075860:CDS
TTGAAATGGAACATTACATT+GGG 0.476213 1_2:+51461309 None:intergenic
TCTTTGCCAACCCAGGGGAG+TGG 0.478438 1_2:-51465037 Msa0075860:CDS
TATTGTCCCACCACTCCCCT+GGG 0.482045 1_2:+51465027 None:intergenic
TCCAGCAAAATTACAATGAA+CGG 0.484357 1_2:+51461079 None:intergenic
ATCTGCGCTCACCATATCTA+CGG 0.486147 1_2:+51461368 None:intergenic
ACAACAGCAGAAAATAGAAA+TGG 0.487177 1_2:-51466161 Msa0075860:exon
GGAAGGTGTTTGATTTCGAC+CGG 0.488766 1_2:+51465881 None:intergenic
AATTCTAAACAATGGTAGCC+AGG 0.505181 1_2:+51461168 None:intergenic
TATGCTTCAAATGGTATGAC+TGG 0.505920 1_2:-51465086 Msa0075860:CDS
AAGCTTTCTTTGCCAACCCA+GGG 0.515795 1_2:-51465043 Msa0075860:CDS
AAGGTGAGTTATGCTTCAAA+TGG 0.517186 1_2:-51465095 Msa0075860:CDS
TGTTATTGTTTCAGGCAAGA+AGG 0.517890 1_2:-51465114 Msa0075860:intron
ATGAGGATGGGGTCTTATAC+CGG 0.520447 1_2:-51461408 Msa0075860:CDS
TCATGTCTAATATTTCCAGT+TGG 0.522776 1_2:+51461427 None:intergenic
GGGAGTGGTGGGACAATAGG+AGG 0.525627 1_2:-51465022 Msa0075860:CDS
GTCCCACCACTCCCCTGGGT+TGG 0.526435 1_2:+51465031 None:intergenic
AAGAGAGTGTTGTGGAAACT+GGG 0.531350 1_2:+51466047 None:intergenic
ATGGAACATTACATTGGGCA+AGG 0.536143 1_2:+51461314 None:intergenic
GAAATATTAGACATGAGGAT+GGG 0.536442 1_2:-51461420 Msa0075860:CDS
TGCTGCTCCATTATTGGTGA+TGG 0.540830 1_2:+51465982 None:intergenic
GCTTCTCAACATGTTCAGAA+AGG 0.542292 1_2:-51465758 Msa0075860:CDS
CTTATACCGGTCAAAATGGT+AGG 0.543946 1_2:-51461395 Msa0075860:CDS
AAACTGGGAGTTTGAATTTG+GGG 0.544519 1_2:+51466062 None:intergenic
GTTGAAATGGAACATTACAT+TGG 0.549390 1_2:+51461308 None:intergenic
GGAAATATTAGACATGAGGA+TGG 0.554921 1_2:-51461421 Msa0075860:CDS
AATCGGCTTCGTCGCAAACC+CGG 0.555320 1_2:-51465900 Msa0075860:CDS
TGCCAACCCAGGGGAGTGGT+GGG 0.556445 1_2:-51465033 Msa0075860:CDS
AGTTGGGATTTGACCCATGG+TGG 0.556762 1_2:+51461444 None:intergenic
CCCTGAAATTTCATGGAACA+AGG 0.559947 1_2:-51465945 Msa0075860:CDS
CAACAACTTTCCCGGAAGGA+AGG 0.564641 1_2:+51465864 None:intergenic
CTTGTTCCATGAAATTTCAG+GGG 0.564810 1_2:+51465946 None:intergenic
GGATTTGACCCATGGTGGAG+TGG 0.565295 1_2:+51461449 None:intergenic
AAATGGTATGACTGGTTCTG+TGG 0.565847 1_2:-51465078 Msa0075860:CDS
TGGTAGATCCACTCCACCAT+GGG 0.571714 1_2:-51461457 Msa0075860:CDS
TCTGCGCTCACCATATCTAC+GGG 0.572725 1_2:+51461369 None:intergenic
TGAACGGGTAGGATCACTCT+TGG 0.576354 1_2:+51461095 None:intergenic
ATCAGATTCATGTTTCCGGT+CGG 0.580777 1_2:-51465733 Msa0075860:CDS
TCGTTTCACTCGATGATAAG+GGG 0.584716 1_2:+51466183 None:intergenic
TTGTTCCATGAAATTTCAGG+GGG 0.591210 1_2:+51465947 None:intergenic
GCTTAAAATCAGGAGCTTTG+GGG 0.595796 1_2:+51461511 None:intergenic
AAAACGCTTCGCAAATGTCG+TGG 0.597891 1_2:-51465817 Msa0075860:CDS
CAAAATTACAATGAACGGGT+AGG 0.598641 1_2:+51461084 None:intergenic
AGTATCAGTAACAAGCCGAC+CGG 0.612026 1_2:+51465718 None:intergenic
AAATATTAGACATGAGGATG+GGG 0.613312 1_2:-51461419 Msa0075860:CDS
ACTTCAAGTTGAAATTTCTG+TGG 0.615724 1_2:+51466014 None:intergenic
TTAAATTGACGGAGTTGCTG+AGG 0.615841 1_2:+51465921 None:intergenic
TGGTTTGGAAGAGAGTGTTG+TGG 0.623476 1_2:+51466039 None:intergenic
AACTGGAAATATTAGACATG+AGG 0.632652 1_2:-51461425 Msa0075860:CDS
CAAGCAACAACTTTCCCGGA+AGG 0.636873 1_2:+51465860 None:intergenic
ATGGTAGATCCACTCCACCA+TGG 0.638276 1_2:-51461458 Msa0075860:CDS
TGGTATGACTGGTTCTGTGG+TGG 0.639075 1_2:-51465075 Msa0075860:CDS
CGTTTCACTCGATGATAAGG+GGG 0.647632 1_2:+51466184 None:intergenic
GAAGGTGTTTGATTTCGACC+GGG 0.654745 1_2:+51465882 None:intergenic
AGCTTTCTTTGCCAACCCAG+GGG 0.662573 1_2:-51465042 Msa0075860:CDS
AGGATACTGGAGAAGCTCTG+TGG 0.677895 1_2:-51461485 Msa0075860:CDS
GTGGGACAATAGGAGGAACA+AGG 0.691913 1_2:-51465015 Msa0075860:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGAAAAAAAATAATTTGA+GGG + chr1_2:51462486-51462505 None:intergenic 10.0%
!! ATATGAAAAAAAATAATTTG+AGG + chr1_2:51462487-51462506 None:intergenic 10.0%
!! AACTAAATTGAATAATAAAA+TGG - chr1_2:51463031-51463050 Msa0075860:intron 10.0%
!! ACTAAATTGAATAATAAAAT+GGG - chr1_2:51463032-51463051 Msa0075860:intron 10.0%
!!! TCATTAATTCTTTAAAAAAA+TGG + chr1_2:51463072-51463091 None:intergenic 10.0%
!!! TTTTATTTATATAATGATCT+GGG + chr1_2:51464027-51464046 None:intergenic 10.0%
!!! TTTTTATTTATATAATGATC+TGG + chr1_2:51464028-51464047 None:intergenic 10.0%
!! TCATATATACAATAAATAAA+TGG - chr1_2:51464672-51464691 Msa0075860:intron 10.0%
!! TATTAAAACTTATAATTAGA+TGG - chr1_2:51465164-51465183 Msa0075860:intron 10.0%
!!! CAATTTTTTATAAAATGAAA+TGG + chr1_2:51465626-51465645 None:intergenic 10.0%
!!! TAATTTTTGCTTTGTTTTTT+TGG - chr1_2:51461564-51461583 Msa0075860:intron 15.0%
!!! TTATATATTAAGTGTACTTT+TGG - chr1_2:51461749-51461768 Msa0075860:intron 15.0%
!!! TATCAATATGTTGATTTTTT+TGG - chr1_2:51462688-51462707 Msa0075860:intron 15.0%
!! ACAATATTCAATTTACATAT+TGG + chr1_2:51463281-51463300 None:intergenic 15.0%
!! TTTAAATAACTTATCCATTA+AGG - chr1_2:51463519-51463538 Msa0075860:intron 15.0%
!! AAGAGATATTAAAATAATCT+TGG + chr1_2:51463703-51463722 None:intergenic 15.0%
!!! GTTTTTATTTTAAAAACTTG+AGG - chr1_2:51464348-51464367 Msa0075860:intron 15.0%
!!! GAATAATTATAAGTTTTTAG+GGG + chr1_2:51465114-51465133 None:intergenic 15.0%
!!! GGAATAATTATAAGTTTTTA+GGG + chr1_2:51465115-51465134 None:intergenic 15.0%
!!! TGGAATAATTATAAGTTTTT+AGG + chr1_2:51463683-51463702 None:intergenic 15.0%
!!! TTTTTTATAAAATGAAATGG+AGG + chr1_2:51465623-51465642 None:intergenic 15.0%
!! AAAAATCTAATTCTAAACAA+TGG + chr1_2:51466058-51466077 None:intergenic 15.0%
!!! ATTGTTTAGAATTAGATTTT+TGG - chr1_2:51466057-51466076 Msa0075860:CDS 15.0%
!! AAGTTGAATTAAATGTAAAG+TGG - chr1_2:51461806-51461825 Msa0075860:intron 20.0%
!! AGTTGAATTAAATGTAAAGT+GGG - chr1_2:51461807-51461826 Msa0075860:intron 20.0%
!! TATCTTCAAATTATCAATTC+TGG - chr1_2:51461913-51461932 Msa0075860:intron 20.0%
!!! GAATTGATTTTGACATTATT+TGG + chr1_2:51461967-51461986 None:intergenic 20.0%
!!! AAATTCTGTTCAAATTTTAC+AGG + chr1_2:51462007-51462026 None:intergenic 20.0%
!! AAAAAAAATAATTTGAGGGT+TGG + chr1_2:51462482-51462501 None:intergenic 20.0%
!! TTCAAAATGCAAAAACAATA+GGG + chr1_2:51462514-51462533 None:intergenic 20.0%
!! GCAAAAAAAATAAAATTAGG+AGG + chr1_2:51462537-51462556 None:intergenic 20.0%
!! GGTGCAAAAAAAATAAAATT+AGG + chr1_2:51462540-51462559 None:intergenic 20.0%
!! TTTATATAGTCAAAATTGAG+TGG - chr1_2:51462726-51462745 Msa0075860:intron 20.0%
!! TCATTAGTGTAATAACAAAA+CGG + chr1_2:51462752-51462771 None:intergenic 20.0%
!! TATTACACTAATGAATTCTA+TGG - chr1_2:51462758-51462777 Msa0075860:intron 20.0%
!!! AAAAAATTCTTTTCTGAACA+AGG - chr1_2:51463828-51463847 Msa0075860:intron 20.0%
!!! TTTTATTTTTTAATGGCAGT+TGG + chr1_2:51464470-51464489 None:intergenic 20.0%
!!! AGAATTATCTGAAATTATGA+TGG - chr1_2:51464789-51464808 Msa0075860:intron 20.0%
!! GAAAATTGAAGTAATAAAGA+AGG - chr1_2:51464955-51464974 Msa0075860:intron 20.0%
!! AAGAGATATTAAAACAGTAT+TGG + chr1_2:51465136-51465155 None:intergenic 20.0%
!!! ATTTTCTCATTAATGCAAAA+GGG + chr1_2:51465205-51465224 None:intergenic 20.0%
!!! AATTTTCTCATTAATGCAAA+AGG + chr1_2:51465206-51465225 None:intergenic 20.0%
!!! CTGAAAAGGTTTTTATTTTT+TGG + chr1_2:51465237-51465256 None:intergenic 20.0%
!! TTTGTAGAACCAAAATTTAT+GGG + chr1_2:51465964-51465983 None:intergenic 20.0%
!! ATTTGTAGAACCAAAATTTA+TGG + chr1_2:51465965-51465984 None:intergenic 20.0%
!!! TAAATTTTGGTTCTACAAAT+AGG - chr1_2:51465965-51465984 Msa0075860:CDS 20.0%
! CAAACAACAAACTTACTATA+AGG - chr1_2:51461537-51461556 Msa0075860:intron 25.0%
!!! TGAGTTGAACAATAATTTTG+AGG - chr1_2:51461854-51461873 Msa0075860:intron 25.0%
! AGAAAAAGCTCAAAGTTATA+TGG + chr1_2:51462082-51462101 None:intergenic 25.0%
! AGAATTAACTCCAAATACAA+TGG + chr1_2:51462366-51462385 None:intergenic 25.0%
! GTTCAAAATGCAAAAACAAT+AGG + chr1_2:51462515-51462534 None:intergenic 25.0%
!!! TGATTTTTTTGGATATGCAA+TGG - chr1_2:51462699-51462718 Msa0075860:intron 25.0%
! TTCATACTTATCCAATATTG+CGG - chr1_2:51464082-51464101 Msa0075860:intron 25.0%
! TTCAGTGCATAAAAAAGAAA+TGG + chr1_2:51464114-51464133 None:intergenic 25.0%
!!! TTTTTTATGCACTGAAGTTT+AGG - chr1_2:51464118-51464137 Msa0075860:intron 25.0%
! AATTTATAGTTCTTCACGTT+TGG - chr1_2:51464231-51464250 Msa0075860:intron 25.0%
!!! TCATTTCTAGAATGGTAAAA+AGG + chr1_2:51464513-51464532 None:intergenic 25.0%
! CATAAGTGGTTTATAGATTT+GGG + chr1_2:51464561-51464580 None:intergenic 25.0%
!!! TATATGATTTGTTCTGAACA+TGG + chr1_2:51464659-51464678 None:intergenic 25.0%
! GAAAAGCTTACGATAATAAT+AGG - chr1_2:51464842-51464861 Msa0075860:intron 25.0%
! TATCTATTTGAAAAGACCTT+AGG - chr1_2:51465023-51465042 Msa0075860:CDS 25.0%
! ATCTATTTGAAAAGACCTTA+GGG - chr1_2:51465024-51465043 Msa0075860:CDS 25.0%
! TGTCTACTACAAAATTAGAT+GGG - chr1_2:51465055-51465074 Msa0075860:CDS 25.0%
!!! ACTGTTTTAATATCTCTTTC+TGG - chr1_2:51465138-51465157 Msa0075860:intron 25.0%
!! TTTTCTCATTAATGCAAAAG+GGG + chr1_2:51465204-51465223 None:intergenic 25.0%
!! ATAAAAACCTTTTCAGAACA+AGG - chr1_2:51465241-51465260 Msa0075860:intron 25.0%
! TATTCATCAGTGGTTATAAA+CGG + chr1_2:51465581-51465600 None:intergenic 25.0%
! AACAAAATCTTATTCATCAG+TGG + chr1_2:51465591-51465610 None:intergenic 25.0%
! TTGAAATGGAACATTACATT+GGG + chr1_2:51465909-51465928 None:intergenic 25.0%
! CAGATATTGATACTTTAATC+TGG - chr1_2:51466088-51466107 Msa0075860:CDS 25.0%
ACAACAGCAGAAAATAGAAA+TGG - chr1_2:51461054-51461073 Msa0075860:three_prime_UTR 30.0%
TGAATTTGGGGATGAAATTA+GGG + chr1_2:51461144-51461163 None:intergenic 30.0%
TTGAATTTGGGGATGAAATT+AGG + chr1_2:51461145-51461164 None:intergenic 30.0%
AAGTTGAAATTTCTGTGGAT+TGG + chr1_2:51461199-51461218 None:intergenic 30.0%
!! ACTTCAAGTTGAAATTTCTG+TGG + chr1_2:51461204-51461223 None:intergenic 30.0%
! GTGGATTCATTTGACATTTT+GGG - chr1_2:51461417-51461436 Msa0075860:CDS 30.0%
!! GATACTATTGATTCTCTTGA+TGG - chr1_2:51461514-51461533 Msa0075860:CDS 30.0%
AATTGAATGACAATGTGTTG+TGG - chr1_2:51461615-51461634 Msa0075860:intron 30.0%
!! TGTGTTGTGGATTTTTGTTT+AGG - chr1_2:51461628-51461647 Msa0075860:intron 30.0%
TTCATTATGTCTGATGACAA+TGG - chr1_2:51461722-51461741 Msa0075860:intron 30.0%
GCGACAAAAATGAATTGATT+CGG - chr1_2:51461779-51461798 Msa0075860:intron 30.0%
! AATGTAAAGTGGGTATTGTT+TGG - chr1_2:51461817-51461836 Msa0075860:intron 30.0%
AGGCTAAAAATCAATTGTAG+AGG - chr1_2:51461874-51461893 Msa0075860:intron 30.0%
CTTCAAATTATCAATTCTGG+AGG - chr1_2:51461916-51461935 Msa0075860:intron 30.0%
ATTTGAACAGAATTTACCAG+TGG - chr1_2:51462012-51462031 Msa0075860:intron 30.0%
!! GCTTTTTCTGTTATTGTTTC+AGG - chr1_2:51462093-51462112 Msa0075860:intron 30.0%
TGTTAACATGCCATTGTATT+TGG - chr1_2:51462353-51462372 Msa0075860:intron 30.0%
GAATGAAGAGAAAGTTGTTT+GGG + chr1_2:51462576-51462595 None:intergenic 30.0%
TGAATGAAGAGAAAGTTGTT+TGG + chr1_2:51462577-51462596 None:intergenic 30.0%
TCTCTAACCTATATGCAATT+TGG - chr1_2:51462615-51462634 Msa0075860:intron 30.0%
CTCTAACCTATATGCAATTT+GGG - chr1_2:51462616-51462635 Msa0075860:intron 30.0%
TCTAACCTATATGCAATTTG+GGG - chr1_2:51462617-51462636 Msa0075860:intron 30.0%
GATACATTCTTGATACTTAG+TGG + chr1_2:51462815-51462834 None:intergenic 30.0%
AAGTATCAAGAATGTATCGT+AGG - chr1_2:51462817-51462836 Msa0075860:intron 30.0%
AGTATCAAGAATGTATCGTA+GGG - chr1_2:51462818-51462837 Msa0075860:intron 30.0%
! TCATAAACTTGCTTCAAACA+AGG + chr1_2:51462860-51462879 None:intergenic 30.0%
TGCAATCTTTATCTGATTCT+TGG - chr1_2:51462890-51462909 Msa0075860:intron 30.0%
TTTGTTTGTATGATATGTGC+TGG - chr1_2:51462934-51462953 Msa0075860:intron 30.0%
AATTAACACGAAACTCCATA+GGG - chr1_2:51462982-51463001 Msa0075860:intron 30.0%
TATACCAAGAGATATGTGTT+CGG - chr1_2:51463110-51463129 Msa0075860:intron 30.0%
! TTTAGAACATTAAACCTCGT+AGG - chr1_2:51463165-51463184 Msa0075860:intron 30.0%
AGACATTCGTAAAGTATGTT+TGG - chr1_2:51463188-51463207 Msa0075860:intron 30.0%
TCAGTGCATGAAAAATGAAA+TGG + chr1_2:51463419-51463438 None:intergenic 30.0%
! TTTTTCATGCACTGAAGTTT+AGG - chr1_2:51463424-51463443 Msa0075860:intron 30.0%
!! ATCCATTAAGGATTAGTTTC+TGG - chr1_2:51463531-51463550 Msa0075860:intron 30.0%
AAAGTTCTCATTAATGCAGA+AGG + chr1_2:51463791-51463810 None:intergenic 30.0%
! TCTTAATGGAAAAGGTACAA+AGG + chr1_2:51463891-51463910 None:intergenic 30.0%
! TAGCTGACTCAATATAATAC+AGG + chr1_2:51463981-51464000 None:intergenic 30.0%
AGTGCATAAAAAAGAAATGG+AGG + chr1_2:51464111-51464130 None:intergenic 30.0%
ATTGTGAAATAGTTGAGATG+CGG - chr1_2:51464303-51464322 Msa0075860:intron 30.0%
! GGGTGTATATGTTGTTTAAT+AGG + chr1_2:51464399-51464418 None:intergenic 30.0%
!!! ATTTTTTAATGGCAGTTGGA+TGG + chr1_2:51464466-51464485 None:intergenic 30.0%
! CCTAAGTATCATTTCTAGAA+TGG + chr1_2:51464521-51464540 None:intergenic 30.0%
! CCATTCTAGAAATGATACTT+AGG - chr1_2:51464518-51464537 Msa0075860:intron 30.0%
! GAAATGATACTTAGGCTTTT+CGG - chr1_2:51464526-51464545 Msa0075860:intron 30.0%
CCATAAGTGGTTTATAGATT+TGG + chr1_2:51464562-51464581 None:intergenic 30.0%
CCAAATCTATAAACCACTTA+TGG - chr1_2:51464559-51464578 Msa0075860:intron 30.0%
! CATTGGGTTTCAAGTATTAT+CGG - chr1_2:51464603-51464622 Msa0075860:intron 30.0%
AGCTTCAATAGAATAGCTAA+CGG - chr1_2:51464905-51464924 Msa0075860:intron 30.0%
GGTTATGAATTCAATTTCTC+AGG - chr1_2:51464976-51464995 Msa0075860:intron 30.0%
TCTATTTGAAAAGACCTTAG+GGG - chr1_2:51465025-51465044 Msa0075860:CDS 30.0%
GTGTCTACTACAAAATTAGA+TGG - chr1_2:51465054-51465073 Msa0075860:CDS 30.0%
!! AAAAGAACCTTGTTCTGAAA+AGG + chr1_2:51465251-51465270 None:intergenic 30.0%
!!! GGTTCTTTTGATTTCATTCT+TGG - chr1_2:51465262-51465281 Msa0075860:intron 30.0%
TTGTCAATAAAACTGTGCTT+TGG - chr1_2:51465290-51465309 Msa0075860:intron 30.0%
AAAGCACATATCAAAAGTGA+AGG - chr1_2:51465346-51465365 Msa0075860:intron 30.0%
TAATGCAAGCTGCAAAATAT+TGG + chr1_2:51465380-51465399 None:intergenic 30.0%
TTTGCAGCTTGCATTATATT+TGG - chr1_2:51465384-51465403 Msa0075860:intron 30.0%
CTTGCATTATATTTGGTCAA+TGG - chr1_2:51465391-51465410 Msa0075860:intron 30.0%
ATCCAATATTATCGTTACCT+TGG - chr1_2:51465495-51465514 Msa0075860:intron 30.0%
TTTCTTTATCTGGATCAACA+TGG - chr1_2:51465519-51465538 Msa0075860:intron 30.0%
CATGTCTAATATTTCCAGTT+GGG + chr1_2:51465790-51465809 None:intergenic 30.0%
TCATGTCTAATATTTCCAGT+TGG + chr1_2:51465791-51465810 None:intergenic 30.0%
AACTGGAAATATTAGACATG+AGG - chr1_2:51465790-51465809 Msa0075860:CDS 30.0%
GAAATATTAGACATGAGGAT+GGG - chr1_2:51465795-51465814 Msa0075860:CDS 30.0%
AAATATTAGACATGAGGATG+GGG - chr1_2:51465796-51465815 Msa0075860:CDS 30.0%
GTTGAAATGGAACATTACAT+TGG + chr1_2:51465910-51465929 None:intergenic 30.0%
! AAGAAGTTTCTAGGTTGAAA+TGG + chr1_2:51465923-51465942 None:intergenic 30.0%
! TGCATTTTGCCCATAAATTT+TGG - chr1_2:51465952-51465971 Msa0075860:CDS 30.0%
TCCAGCAAAATTACAATGAA+CGG + chr1_2:51466139-51466158 None:intergenic 30.0%
! TAATTTTGCTGGAGAAGAAT+TGG - chr1_2:51466146-51466165 Msa0075860:exon 30.0%
GAGAAGAATTGGTGAAAATT+TGG - chr1_2:51466157-51466176 Msa0075860:exon 30.0%
AAACTGGGAGTTTGAATTTG+GGG + chr1_2:51461156-51461175 None:intergenic 35.0%
GAAACTGGGAGTTTGAATTT+GGG + chr1_2:51461157-51461176 None:intergenic 35.0%
!! GAAATTTCTGTGGATTGGTT+TGG + chr1_2:51461194-51461213 None:intergenic 35.0%
TCCAATTCCATCACCAATAA+TGG - chr1_2:51461226-51461245 Msa0075860:three_prime_UTR 35.0%
!! TCCATTATTGGTGATGGAAT+TGG + chr1_2:51461230-51461249 None:intergenic 35.0%
ATGAAATTTCAGGGGGTTTA+GGG + chr1_2:51461264-51461283 None:intergenic 35.0%
TTGTTCCATGAAATTTCAGG+GGG + chr1_2:51461271-51461290 None:intergenic 35.0%
CTTGTTCCATGAAATTTCAG+GGG + chr1_2:51461272-51461291 None:intergenic 35.0%
CCTTGTTCCATGAAATTTCA+GGG + chr1_2:51461273-51461292 None:intergenic 35.0%
TCCTTGTTCCATGAAATTTC+AGG + chr1_2:51461274-51461293 None:intergenic 35.0%
AGCAACTCCGTCAATTTAAT+CGG - chr1_2:51461298-51461317 Msa0075860:three_prime_UTR 35.0%
! CGTGGATTCATTTGACATTT+TGG - chr1_2:51461416-51461435 Msa0075860:CDS 35.0%
!! GTTGTGGATTTTTGTTTAGG+TGG - chr1_2:51461631-51461650 Msa0075860:intron 35.0%
AGCAGCTGAATTTCATTGAT+AGG - chr1_2:51461660-51461679 Msa0075860:intron 35.0%
TACTACATACTACAATCCAC+TGG + chr1_2:51462031-51462050 None:intergenic 35.0%
ATGTAGTATCTACCTTTAGC+TGG - chr1_2:51462043-51462062 Msa0075860:intron 35.0%
TGTAGTATCTACCTTTAGCT+GGG - chr1_2:51462044-51462063 Msa0075860:intron 35.0%
TGTTATTGTTTCAGGCAAGA+AGG - chr1_2:51462101-51462120 Msa0075860:intron 35.0%
AAGGTGAGTTATGCTTCAAA+TGG - chr1_2:51462120-51462139 Msa0075860:intron 35.0%
TATGCTTCAAATGGTATGAC+TGG - chr1_2:51462129-51462148 Msa0075860:intron 35.0%
!! GAGAAAGTTGTTTGGGTTTT+TGG + chr1_2:51462569-51462588 None:intergenic 35.0%
CACAACACAGACATATCATT+AGG + chr1_2:51462644-51462663 None:intergenic 35.0%
TATGATATGTGCTGGAAACA+TGG - chr1_2:51462942-51462961 Msa0075860:intron 35.0%
TGGAGTTTCGTGTTAATTGA+AGG + chr1_2:51462980-51462999 None:intergenic 35.0%
CAATTAACACGAAACTCCAT+AGG - chr1_2:51462981-51463000 Msa0075860:intron 35.0%
GTGCATGAAAAATGAAATGG+AGG + chr1_2:51463416-51463435 None:intergenic 35.0%
! ATGCACTGAAGTTTAGGATT+AGG - chr1_2:51463430-51463449 Msa0075860:intron 35.0%
! TGAAGTTTAGGATTAGGAAG+AGG - chr1_2:51463436-51463455 Msa0075860:intron 35.0%
! GAAGTTTAGGATTAGGAAGA+GGG - chr1_2:51463437-51463456 Msa0075860:intron 35.0%
CTCCAGAAACTAATCCTTAA+TGG + chr1_2:51463536-51463555 None:intergenic 35.0%
! TCTGAACAAGGTTTTTACGT+CGG - chr1_2:51463840-51463859 Msa0075860:intron 35.0%
TATTGGAATTGTTCCCTTCA+CGG + chr1_2:51463950-51463969 None:intergenic 35.0%
TAATACAGGCAGCAAGATAT+TGG + chr1_2:51463967-51463986 None:intergenic 35.0%
CCAAAGGATGAGATTTATGT+CGG - chr1_2:51464178-51464197 Msa0075860:intron 35.0%
! TGTTGTTTAATAGGACCTCA+GGG + chr1_2:51464390-51464409 None:intergenic 35.0%
! ATGTTGTTTAATAGGACCTC+AGG + chr1_2:51464391-51464410 None:intergenic 35.0%
TTGGATGGAATTTAACAGCA+GGG + chr1_2:51464451-51464470 None:intergenic 35.0%
AAGTGGTTTATAGATTTGGG+TGG + chr1_2:51464558-51464577 None:intergenic 35.0%
TACTTGAAACCCAATGCTAT+GGG + chr1_2:51464599-51464618 None:intergenic 35.0%
ATACTTGAAACCCAATGCTA+TGG + chr1_2:51464600-51464619 None:intergenic 35.0%
TGGTATCTTCATTCGTTATG+TGG + chr1_2:51464639-51464658 None:intergenic 35.0%
GAATATTCAGTGTTCGTCAA+TGG - chr1_2:51464864-51464883 Msa0075860:intron 35.0%
GCTTCAATAGAATAGCTAAC+GGG - chr1_2:51464906-51464925 Msa0075860:intron 35.0%
CTTCAATAGAATAGCTAACG+GGG - chr1_2:51464907-51464926 Msa0075860:intron 35.0%
TTCAATAGAATAGCTAACGG+GGG - chr1_2:51464908-51464927 Msa0075860:intron 35.0%
! ATTTCTCAGGTGTTAAGTTG+AGG - chr1_2:51464989-51465008 Msa0075860:intron 35.0%
! ATGGGTTGTTTATACCTCAA+GGG - chr1_2:51465073-51465092 Msa0075860:CDS 35.0%
AAAACTGTGCTTTGGTACAT+AGG - chr1_2:51465298-51465317 Msa0075860:intron 35.0%
AGCCAAGGTAACGATAATAT+TGG + chr1_2:51465500-51465519 None:intergenic 35.0%
! TTACCTTGGCTTTCTTTATC+TGG - chr1_2:51465509-51465528 Msa0075860:intron 35.0%
GTTATAAACGGAGTTAGACA+TGG + chr1_2:51465569-51465588 None:intergenic 35.0%
TGCTTAAAATCAGGAGCTTT+GGG + chr1_2:51465708-51465727 None:intergenic 35.0%
GTATCCTTGTGCTTAAAATC+AGG + chr1_2:51465717-51465736 None:intergenic 35.0%
! GATTTTAAGCACAAGGATAC+TGG - chr1_2:51465717-51465736 Msa0075860:CDS 35.0%
GGAAATATTAGACATGAGGA+TGG - chr1_2:51465794-51465813 Msa0075860:CDS 35.0%
AACTGCACAAAGAAGTTTCT+AGG + chr1_2:51465932-51465951 None:intergenic 35.0%
GGAACATTGTTTATAGTCTC+TGG - chr1_2:51465986-51466005 Msa0075860:CDS 35.0%
! TCTAGTCTATTTTATCAGCC+TGG - chr1_2:51466029-51466048 Msa0075860:CDS 35.0%
AATTCTAAACAATGGTAGCC+AGG + chr1_2:51466050-51466069 None:intergenic 35.0%
CAAAATTACAATGAACGGGT+AGG + chr1_2:51466134-51466153 None:intergenic 35.0%
CCAGCAAAATTACAATGAAC+GGG + chr1_2:51466138-51466157 None:intergenic 35.0%
TCGTTTCACTCGATGATAAG+GGG + chr1_2:51461035-51461054 None:intergenic 40.0%
GTCGTTTCACTCGATGATAA+GGG + chr1_2:51461036-51461055 None:intergenic 40.0%
! TGTCGTTTCACTCGATGATA+AGG + chr1_2:51461037-51461056 None:intergenic 40.0%
!! GGATGAAATTAGGGTTTTGG+GGG + chr1_2:51461135-51461154 None:intergenic 40.0%
! GGGATGAAATTAGGGTTTTG+GGG + chr1_2:51461136-51461155 None:intergenic 40.0%
! GGGGATGAAATTAGGGTTTT+GGG + chr1_2:51461137-51461156 None:intergenic 40.0%
! TGGGGATGAAATTAGGGTTT+TGG + chr1_2:51461138-51461157 None:intergenic 40.0%
GGAAACTGGGAGTTTGAATT+TGG + chr1_2:51461158-51461177 None:intergenic 40.0%
!! AAGAGAGTGTTGTGGAAACT+GGG + chr1_2:51461171-51461190 None:intergenic 40.0%
GTATGATGCTGCTCCATTAT+TGG + chr1_2:51461242-51461261 None:intergenic 40.0%
CATGAAATTTCAGGGGGTTT+AGG + chr1_2:51461265-51461284 None:intergenic 40.0%
CTAAACCCCCTGAAATTTCA+TGG - chr1_2:51461263-51461282 Msa0075860:three_prime_UTR 40.0%
CCCTGAAATTTCATGGAACA+AGG - chr1_2:51461270-51461289 Msa0075860:three_prime_UTR 40.0%
TTAAATTGACGGAGTTGCTG+AGG + chr1_2:51461297-51461316 None:intergenic 40.0%
GACGAAGCCGATTAAATTGA+CGG + chr1_2:51461308-51461327 None:intergenic 40.0%
GAAATCAAACACCTTCCTTC+CGG - chr1_2:51461340-51461359 Msa0075860:exon 40.0%
AAATCAAACACCTTCCTTCC+GGG - chr1_2:51461341-51461360 Msa0075860:exon 40.0%
!! TTGCGAAGCGTTTTTCTTGA+CGG + chr1_2:51461392-51461411 None:intergenic 40.0%
GCTTCTCAACATGTTCAGAA+AGG - chr1_2:51461457-51461476 Msa0075860:CDS 40.0%
GGTCATCAGATTCATGTTTC+CGG - chr1_2:51461478-51461497 Msa0075860:CDS 40.0%
ATCAGATTCATGTTTCCGGT+CGG - chr1_2:51461482-51461501 Msa0075860:CDS 40.0%
AAAAAGCGAAACCCAGCTAA+AGG + chr1_2:51462058-51462077 None:intergenic 40.0%
!! AAATGGTATGACTGGTTCTG+TGG - chr1_2:51462137-51462156 Msa0075860:intron 40.0%
!! TCTACTAGCCTTTCAATCAG+TGG - chr1_2:51462424-51462443 Msa0075860:intron 40.0%
TAGGACCCCAAATTGCATAT+AGG + chr1_2:51462625-51462644 None:intergenic 40.0%
CACAATCTTCAGAGCAAAAG+AGG + chr1_2:51463009-51463028 None:intergenic 40.0%
GAGGAAATCATTGAAAGCAG+TGG + chr1_2:51463397-51463416 None:intergenic 40.0%
! TTTAGGATTAGGAAGAGGGT+AGG - chr1_2:51463441-51463460 Msa0075860:intron 40.0%
CCACAGTACAAGGTTTATGT+CGG - chr1_2:51463493-51463512 Msa0075860:intron 40.0%
! GCTAAGCTTTATGTTTGCAG+AGG - chr1_2:51463562-51463581 Msa0075860:intron 40.0%
! CAGCTGACTCTTAATGGAAA+AGG + chr1_2:51463899-51463918 None:intergenic 40.0%
! TACAGTCAGCTGACTCTTAA+TGG + chr1_2:51463905-51463924 None:intergenic 40.0%
AAAGCACATATCAACCGTGA+AGG - chr1_2:51463933-51463952 Msa0075860:intron 40.0%
AAGCACATATCAACCGTGAA+GGG - chr1_2:51463934-51463953 Msa0075860:intron 40.0%
AATGGAGGAAACCGCAATAT+TGG + chr1_2:51464096-51464115 None:intergenic 40.0%
! TGCACTGAAGTTTAGGACAA+TGG - chr1_2:51464125-51464144 Msa0075860:intron 40.0%
! CTGAAGTTTAGGACAATGGT+AGG - chr1_2:51464129-51464148 Msa0075860:intron 40.0%
TGGTAGGTTTCCCTATTACA+AGG - chr1_2:51464145-51464164 Msa0075860:intron 40.0%
AGGTTTCCCTATTACAAGGT+TGG - chr1_2:51464149-51464168 Msa0075860:intron 40.0%
GGTTTCCCTATTACAAGGTT+GGG - chr1_2:51464150-51464169 Msa0075860:intron 40.0%
CAAGTCCCAACCTTGTAATA+GGG + chr1_2:51464158-51464177 None:intergenic 40.0%
CCGACATAAATCTCATCCTT+TGG + chr1_2:51464181-51464200 None:intergenic 40.0%
TGAAATAGTTGAGATGCGGA+AGG - chr1_2:51464307-51464326 Msa0075860:intron 40.0%
GTTGTTTAATAGGACCTCAG+GGG + chr1_2:51464389-51464408 None:intergenic 40.0%
TGTCTACTGTGAAAGTAGAG+GGG + chr1_2:51464420-51464439 None:intergenic 40.0%
GTGTCTACTGTGAAAGTAGA+GGG + chr1_2:51464421-51464440 None:intergenic 40.0%
TGTGTCTACTGTGAAAGTAG+AGG + chr1_2:51464422-51464441 None:intergenic 40.0%
TGGATGGAATTTAACAGCAG+GGG + chr1_2:51464450-51464469 None:intergenic 40.0%
GTTGGATGGAATTTAACAGC+AGG + chr1_2:51464452-51464471 None:intergenic 40.0%
! CTTGTGCTCTTTTCCATAAG+TGG + chr1_2:51464575-51464594 None:intergenic 40.0%
TAGTGTTTGCATGAGACATC+TGG - chr1_2:51464715-51464734 Msa0075860:intron 40.0%
AGTGTTTGCATGAGACATCT+GGG - chr1_2:51464716-51464735 Msa0075860:intron 40.0%
AGTGTTCGTCAATGGAAAAC+TGG - chr1_2:51464872-51464891 Msa0075860:intron 40.0%
!! GATGGGTTGTTTATACCTCA+AGG - chr1_2:51465072-51465091 Msa0075860:CDS 40.0%
GTACATAGGCCAATAAGAAC+TGG - chr1_2:51465312-51465331 Msa0075860:intron 40.0%
TGCAAGTAGCCAGTTCTTAT+TGG + chr1_2:51465324-51465343 None:intergenic 40.0%
GATCCAGATAAAGAAAGCCA+AGG + chr1_2:51465515-51465534 None:intergenic 40.0%
TGCGTCTTCACAAACATTTC+TGG - chr1_2:51465665-51465684 Msa0075860:intron 40.0%
!! CATTTCTGGTAACTTCACAG+AGG - chr1_2:51465679-51465698 Msa0075860:CDS 40.0%
GCTTAAAATCAGGAGCTTTG+GGG + chr1_2:51465707-51465726 None:intergenic 40.0%
GTGCTTAAAATCAGGAGCTT+TGG + chr1_2:51465709-51465728 None:intergenic 40.0%
! AGCTCCTGATTTTAAGCACA+AGG - chr1_2:51465710-51465729 Msa0075860:CDS 40.0%
CTTATACCGGTCAAAATGGT+AGG - chr1_2:51465820-51465839 Msa0075860:CDS 40.0%
ACATTACATTGGGCAAGGTT+TGG + chr1_2:51465899-51465918 None:intergenic 40.0%
ATGGAACATTACATTGGGCA+AGG + chr1_2:51465904-51465923 None:intergenic 40.0%
! CCCGTTCATTGTAATTTTGC+TGG - chr1_2:51466135-51466154 Msa0075860:CDS 40.0%
ACTCGATGATAAGGGGGAAT+TGG + chr1_2:51461028-51461047 None:intergenic 45.0%
CGTTTCACTCGATGATAAGG+GGG + chr1_2:51461034-51461053 None:intergenic 45.0%
!!! ATTAGGGTTTTGGGGGAAAG+TGG + chr1_2:51461128-51461147 None:intergenic 45.0%
!! GAAGAGAGTGTTGTGGAAAC+TGG + chr1_2:51461172-51461191 None:intergenic 45.0%
!! TGGTTTGGAAGAGAGTGTTG+TGG + chr1_2:51461179-51461198 None:intergenic 45.0%
TGCTGCTCCATTATTGGTGA+TGG + chr1_2:51461236-51461255 None:intergenic 45.0%
!! GAAGGTGTTTGATTTCGACC+GGG + chr1_2:51461336-51461355 None:intergenic 45.0%
!! GGAAGGTGTTTGATTTCGAC+CGG + chr1_2:51461337-51461356 None:intergenic 45.0%
AGTCCAAGCAACAACTTTCC+CGG + chr1_2:51461362-51461381 None:intergenic 45.0%
AAAACGCTTCGCAAATGTCG+TGG - chr1_2:51461398-51461417 Msa0075860:CDS 45.0%
AGTATCAGTAACAAGCCGAC+CGG + chr1_2:51461500-51461519 None:intergenic 45.0%
!! CTGGTTCTGTGGTGGAATTA+TGG - chr1_2:51462148-51462167 Msa0075860:intron 45.0%
AAGCTTTCTTTGCCAACCCA+GGG - chr1_2:51462172-51462191 Msa0075860:intron 45.0%
! TAGTAGAAAGAGCGTGGTTG+AGG + chr1_2:51462411-51462430 None:intergenic 45.0%
AAAGGCTAGTAGAAAGAGCG+TGG + chr1_2:51462417-51462436 None:intergenic 45.0%
!! ACTAGCCTTTCAATCAGTGG+CGG - chr1_2:51462427-51462446 Msa0075860:intron 45.0%
!!! TGTTTGGGTTTTTGGCTAGC+TGG + chr1_2:51462561-51462580 None:intergenic 45.0%
GTTGCCGAACACATATCTCT+TGG + chr1_2:51463117-51463136 None:intergenic 45.0%
CTTTACGAATGTCTCCTACG+AGG + chr1_2:51463182-51463201 None:intergenic 45.0%
AAGTCCTAAGCCTAGAAACC+GGG + chr1_2:51463470-51463489 None:intergenic 45.0%
CAAGTCCTAAGCCTAGAAAC+CGG + chr1_2:51463471-51463490 None:intergenic 45.0%
CCGACATAAACCTTGTACTG+TGG + chr1_2:51463496-51463515 None:intergenic 45.0%
GAGTATGCAGTATGCCAACA+GGG + chr1_2:51463769-51463788 None:intergenic 45.0%
GCAAGTCCCAACCTTGTAAT+AGG + chr1_2:51464159-51464178 None:intergenic 45.0%
!! AATTACACTGACTTCCCCTG+AGG - chr1_2:51464372-51464391 Msa0075860:intron 45.0%
GTCTACTGTGAAAGTAGAGG+GGG + chr1_2:51464419-51464438 None:intergenic 45.0%
AGCACAAGACCCATAGCATT+GGG - chr1_2:51464587-51464606 Msa0075860:intron 45.0%
!! TCTCAGGTGTTAAGTTGAGG+AGG - chr1_2:51464992-51465011 Msa0075860:intron 45.0%
!! CTCAGGTGTTAAGTTGAGGA+GGG - chr1_2:51464993-51465012 Msa0075860:intron 45.0%
GTAGACACTAATCTCCCCTA+AGG + chr1_2:51465042-51465061 None:intergenic 45.0%
GGTTGTTTATACCTCAAGGG+AGG - chr1_2:51465076-51465095 Msa0075860:CDS 45.0%
AATTACACTGACCTCCCTTG+AGG + chr1_2:51465090-51465109 None:intergenic 45.0%
! ATGAGGATGGGGTCTTATAC+CGG - chr1_2:51465807-51465826 Msa0075860:CDS 45.0%
! GGGTCTTATACCGGTCAAAA+TGG - chr1_2:51465816-51465835 Msa0075860:CDS 45.0%
ATCTGCGCTCACCATATCTA+CGG + chr1_2:51465850-51465869 None:intergenic 45.0%
!! TTGAATATAATATTATTATA+AGG - chr1_2:51463253-51463272 Msa0075860:intron 5.0%
!!! TTTTTGTTTTTATTTTTTAA+TGG + chr1_2:51464477-51464496 None:intergenic 5.0%
!!! GGTTTTGGGGGAAAGTGGTA+AGG + chr1_2:51461123-51461142 None:intergenic 50.0%
CAACAACTTTCCCGGAAGGA+AGG + chr1_2:51461354-51461373 None:intergenic 50.0%
CAAGCAACAACTTTCCCGGA+AGG + chr1_2:51461358-51461377 None:intergenic 50.0%
CTTCCGGGAAAGTTGTTGCT+TGG - chr1_2:51461356-51461375 Msa0075860:CDS 50.0%
TCTTGATCATGTGACCGCAC+CGG + chr1_2:51461695-51461714 None:intergenic 50.0%
!! TGGTATGACTGGTTCTGTGG+TGG - chr1_2:51462140-51462159 Msa0075860:intron 50.0%
CAAGCTTTCTTTGCCAACCC+AGG - chr1_2:51462171-51462190 Msa0075860:intron 50.0%
AGCTTTCTTTGCCAACCCAG+GGG - chr1_2:51462173-51462192 Msa0075860:intron 50.0%
GTGGGACAATAGGAGGAACA+AGG - chr1_2:51462200-51462219 Msa0075860:intron 50.0%
CAGAGCAAAAGAGGTCCCTA+TGG + chr1_2:51463000-51463019 None:intergenic 50.0%
AAATCGAACCCCCTGATCCA+AGG - chr1_2:51463360-51463379 Msa0075860:intron 50.0%
AATCGAACCCCCTGATCCAA+GGG - chr1_2:51463361-51463380 Msa0075860:intron 50.0%
CAGTATGCCAACAGGGTTGA+CGG + chr1_2:51463762-51463781 None:intergenic 50.0%
GGAGTATGCAGTATGCCAAC+AGG + chr1_2:51463770-51463789 None:intergenic 50.0%
ACAAGGTTGGGACTTGCCAA+AGG - chr1_2:51464162-51464181 Msa0075860:intron 50.0%
GAGCACAAGACCCATAGCAT+TGG - chr1_2:51464586-51464605 Msa0075860:intron 50.0%
!! AGGTGTTAAGTTGAGGAGGG+AGG - chr1_2:51464996-51465015 Msa0075860:intron 50.0%
AGGATACTGGAGAAGCTCTG+TGG - chr1_2:51465730-51465749 Msa0075860:CDS 50.0%
! GGAGAAGCTCTGTGGATTGA+TGG - chr1_2:51465738-51465757 Msa0075860:CDS 50.0%
ATGGTAGATCCACTCCACCA+TGG - chr1_2:51465757-51465776 Msa0075860:CDS 50.0%
TGGTAGATCCACTCCACCAT+GGG - chr1_2:51465758-51465777 Msa0075860:CDS 50.0%
AGTTGGGATTTGACCCATGG+TGG + chr1_2:51465774-51465793 None:intergenic 50.0%
ACCATGGGTCAAATCCCAAC+TGG - chr1_2:51465773-51465792 Msa0075860:CDS 50.0%
TCCAGTTGGGATTTGACCCA+TGG + chr1_2:51465777-51465796 None:intergenic 50.0%
!! GGGCATCCTACCATTTTGAC+CGG + chr1_2:51465829-51465848 None:intergenic 50.0%
TGGTAGGATGCCCGTAGATA+TGG - chr1_2:51465836-51465855 Msa0075860:CDS 50.0%
TCTGCGCTCACCATATCTAC+GGG + chr1_2:51465849-51465868 None:intergenic 50.0%
TGAACGGGTAGGATCACTCT+TGG + chr1_2:51466123-51466142 None:intergenic 50.0%
! AATCGGCTTCGTCGCAAACC+CGG - chr1_2:51461315-51461334 Msa0075860:three_prime_UTR 55.0%
CATTGATAGGAGTGACGCGC+CGG - chr1_2:51461673-51461692 Msa0075860:intron 55.0%
TATTGTCCCACCACTCCCCT+GGG + chr1_2:51462191-51462210 None:intergenic 55.0%
! TGGCTCCGCCACTGATTGAA+AGG + chr1_2:51462435-51462454 None:intergenic 55.0%
TGCATCCCCTCACCACAATG+TGG + chr1_2:51462455-51462474 None:intergenic 55.0%
TTGCCAAGCCCTTGGATCAG+GGG + chr1_2:51463372-51463391 None:intergenic 55.0%
GTTGCCAAGCCCTTGGATCA+GGG + chr1_2:51463373-51463392 None:intergenic 55.0%
TAGGAAGAGGGTAGGTTGCC+CGG - chr1_2:51463449-51463468 Msa0075860:intron 55.0%
! GTTGCCCGGTTTCTAGGCTT+AGG - chr1_2:51463463-51463482 Msa0075860:intron 55.0%
AGGACTTGCGCCACAGTACA+AGG - chr1_2:51463483-51463502 Msa0075860:intron 55.0%
CAAACAGCCGTCAACCCTGT+TGG - chr1_2:51463752-51463771 Msa0075860:intron 55.0%
! GGATTTGACCCATGGTGGAG+TGG + chr1_2:51465769-51465788 None:intergenic 55.0%
TCTTTGCCAACCCAGGGGAG+TGG - chr1_2:51462178-51462197 Msa0075860:intron 60.0%
CTATTGTCCCACCACTCCCC+TGG + chr1_2:51462192-51462211 None:intergenic 60.0%
! CAGGGGAGTGGTGGGACAAT+AGG - chr1_2:51462190-51462209 Msa0075860:intron 60.0%
! GGGAGTGGTGGGACAATAGG+AGG - chr1_2:51462193-51462212 Msa0075860:intron 60.0%
! TCAGTGGCGGAGCCACATTG+TGG - chr1_2:51462440-51462459 Msa0075860:intron 60.0%
GCGGAGCCACATTGTGGTGA+GGG - chr1_2:51462446-51462465 Msa0075860:intron 60.0%
CGGAGCCACATTGTGGTGAG+GGG - chr1_2:51462447-51462466 Msa0075860:intron 60.0%
AACCCCCTGATCCAAGGGCT+TGG - chr1_2:51463366-51463385 Msa0075860:intron 60.0%
TGCCAAGCCCTTGGATCAGG+GGG + chr1_2:51463371-51463390 None:intergenic 60.0%
CGTTGCCAAGCCCTTGGATC+AGG + chr1_2:51463374-51463393 None:intergenic 60.0%
GGGTAGGTTGCCCGGTTTCT+AGG - chr1_2:51463457-51463476 Msa0075860:intron 60.0%
! ATAGGAGTGACGCGCCGGTG+CGG - chr1_2:51461678-51461697 Msa0075860:intron 65.0%
TTGCCAACCCAGGGGAGTGG+TGG - chr1_2:51462181-51462200 Msa0075860:intron 65.0%
TGCCAACCCAGGGGAGTGGT+GGG - chr1_2:51462182-51462201 Msa0075860:intron 65.0%
GGCGGAGCCACATTGTGGTG+AGG - chr1_2:51462445-51462464 Msa0075860:intron 65.0%
CAGTGGCGTTGCCAAGCCCT+TGG + chr1_2:51463380-51463399 None:intergenic 65.0%
GTCCCACCACTCCCCTGGGT+TGG + chr1_2:51462187-51462206 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 51461023 51466214 51461023 ID=Msa0075860;Name=Msa0075860
chr1_2 mRNA 51461023 51466214 51461023 ID=Msa0075860-mRNA-1;Parent=Msa0075860;Name=Msa0075860-mRNA-1;_AED=0.21;_eAED=0.21;_QI=50|0.66|0.75|1|1|1|4|327|271
chr1_2 exon 51461023 51461538 51461023 ID=Msa0075860-mRNA-1:exon:15875;Parent=Msa0075860-mRNA-1
chr1_2 exon 51465016 51465122 51465016 ID=Msa0075860-mRNA-1:exon:15874;Parent=Msa0075860-mRNA-1
chr1_2 exon 51465554 51465587 51465554 ID=Msa0075860-mRNA-1:exon:15873;Parent=Msa0075860-mRNA-1
chr1_2 exon 51465679 51466214 51465679 ID=Msa0075860-mRNA-1:exon:15872;Parent=Msa0075860-mRNA-1
chr1_2 five_prime_UTR 51466165 51466214 51466165 ID=Msa0075860-mRNA-1:five_prime_utr;Parent=Msa0075860-mRNA-1
chr1_2 CDS 51465679 51466164 51465679 ID=Msa0075860-mRNA-1:cds;Parent=Msa0075860-mRNA-1
chr1_2 CDS 51465554 51465587 51465554 ID=Msa0075860-mRNA-1:cds;Parent=Msa0075860-mRNA-1
chr1_2 CDS 51465016 51465122 51465016 ID=Msa0075860-mRNA-1:cds;Parent=Msa0075860-mRNA-1
chr1_2 CDS 51461350 51461538 51461350 ID=Msa0075860-mRNA-1:cds;Parent=Msa0075860-mRNA-1
chr1_2 three_prime_UTR 51461023 51461349 51461023 ID=Msa0075860-mRNA-1:three_prime_utr;Parent=Msa0075860-mRNA-1
Gene Sequence

>Msa0075860

ATGGCGTTAGAGCAAGCAGTTTCACTTTCATCAACTCGCTTCAGAAACCTTACCACTTTCCCCCAAAACCCTAATTTCATCCCCAAATTCAAACTCCCAGTTTCCACAACACTCTCTTCCAAACCAATCCACAGAAATTTCAACTTGAAGTGCTCCAATTCCATCACCAATAATGGAGCAGCATCATACCCTAAACCCCCTGAAATTTCATGGAACAAGGACCTCAGCAACTCCGTCAATTTAATCGGCTTCGTCGCAAACCCGGTCGAAATCAAACACCTTCCTTCCGGGAAAGTTGTTGCTTGGACTCGTCTCTCCGTCAAGAAAAACGCTTCGCAAATGTCGTGGATTCATTTGACATTTTGGGATGAACTTGCTCATGTTGCTTCTCAACATGTTCAGAAAGGTCATCAGATTCATGTTTCCGGTCGGCTTGTTACTGATACTATTGATTCTCTTGATGGCAAACAACAAACTTACTATAAGGTGGTTGCTCAGCAGCTGAATTTCATTGATAGGAGCAAGAAGGTGAGTTATGCTTCAAATGGTATGACTGGTTCTGTGGTGGAATTATGGCAAGCTTTCTTTGCCAACCCAGGGGAGTGGTGGGACAATAGGAGGAACAAGAGGAACCCCAAAGCTCCTGATTTTAAGCACAAGGATACTGGAGAAGCTCTGTGGATTGATGGTAGATCCACTCCACCATGGGTCAAATCCCAACTGGAAATATTAGACATGAGGATGGGGTCTTATACCGGTCAAAATGGTAGGATGCCCGTAGATATGGTGAGCGCAGATGAAATGTTGTCTTTCTAA

Protein sequence

>Msa0075860

MALEQAVSLSSTRFRNLTTFPQNPNFIPKFKLPVSTTLSSKPIHRNFNLKCSNSITNNGAASYPKPPEISWNKDLSNSVNLIGFVANPVEIKHLPSGKVVAWTRLSVKKNASQMSWIHLTFWDELAHVASQHVQKGHQIHVSGRLVTDTIDSLDGKQQTYYKVVAQQLNFIDRSKKVSYASNGMTGSVVELWQAFFANPGEWWDNRRNKRNPKAPDFKHKDTGEALWIDGRSTPPWVKSQLEILDMRMGSYTGQNGRMPVDMVSADEMLSF*