AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1401640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1401640 MtrunA17_Chr4g0056771 93.684 285 15 1 1 282 1 285 0.0 550
Msa1401640 MtrunA17_Chr7g0270061 37.113 194 117 1 75 263 86 279 1.76e-41 145
Msa1401640 MtrunA17_Chr1g0194601 36.683 199 118 2 73 263 84 282 3.15e-40 141
Msa1401640 MtrunA17_Chr4g0038261 36.816 201 119 3 84 279 40 237 3.69e-40 139
Msa1401640 MtrunA17_Chr7g0251451 36.126 191 122 0 88 278 75 265 7.61e-39 137
Msa1401640 MtrunA17_Chr5g0409311 29.259 270 170 5 1 263 4 259 3.46e-36 130
Msa1401640 MtrunA17_Chr4g0015831 42.975 121 69 0 71 191 1 121 5.73e-36 125
Msa1401640 MtrunA17_CPg0492721 42.975 121 69 0 71 191 1 121 5.73e-36 125
Msa1401640 MtrunA17_Chr4g0034751 33.333 183 118 1 82 264 93 271 5.01e-32 119
Msa1401640 MtrunA17_Chr4g0055551 35.638 188 113 1 92 271 104 291 2.88e-27 107
Msa1401640 MtrunA17_Chr7g0272191 31.746 189 116 4 101 276 119 307 4.41e-21 90.9
Msa1401640 MtrunA17_Chr1g0207341 31.148 183 116 2 92 264 155 337 7.60e-21 90.9
Msa1401640 MtrunA17_Chr1g0184041 39.474 76 46 0 106 181 100 175 2.33e-16 75.5
Msa1401640 MtrunA17_Chr4g0016921 38.806 67 38 2 71 137 1 64 1.25e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1401640 AT1G12410.1 64.311 283 96 4 1 282 1 279 3.35e-133 378
Msa1401640 ATCG00670.1 41.451 193 112 1 71 262 1 193 4.29e-54 174
Msa1401640 AT5G23140.1 36.041 197 121 2 78 272 37 230 1.66e-42 146
Msa1401640 AT1G02560.1 41.916 167 97 0 97 263 119 285 5.86e-42 146
Msa1401640 AT5G45390.1 36.628 172 109 0 92 263 79 250 1.68e-36 132
Msa1401640 AT1G66670.1 34.031 191 111 4 79 263 75 256 4.69e-36 131
Msa1401640 AT4G17040.1 31.707 246 152 3 36 271 53 292 5.95e-36 130
Msa1401640 AT1G11750.1 34.682 173 113 0 91 263 95 267 1.97e-34 125
Msa1401640 AT1G11750.2 34.483 174 114 0 91 264 113 286 2.91e-34 126
Msa1401640 AT1G09130.2 32.787 183 112 2 92 263 121 303 4.42e-26 105
Msa1401640 AT1G09130.1 32.787 183 112 2 92 263 121 303 4.42e-26 105
Msa1401640 AT1G09130.3 32.787 183 112 2 92 263 121 303 1.26e-25 104
Msa1401640 AT1G49970.1 34.066 182 110 2 92 263 171 352 9.15e-23 97.1

Find 91 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATCAATGGGTTGATTTA+TGG 0.126424 tig0022713:+16178 Msa1401640:CDS
TTTGTGCCCTTACTGGTTTC+TGG 0.139154 tig0022713:-16098 None:intergenic
TTTCAATCCGGAGTAGATTT+TGG 0.262983 tig0022713:-15212 None:intergenic
TCATTTCCATAGTGAACTTT+TGG 0.263247 tig0022713:+18410 Msa1401640:three_prime_UTR
GCACAAGAGGCCCTTGACTA+TGG 0.268943 tig0022713:+18242 Msa1401640:CDS
ATCCGAATTTGTGCCCTTAC+TGG 0.280153 tig0022713:-16105 None:intergenic
CCTTCACCAGGTGTTCTATA+GGG 0.283797 tig0022713:-16153 None:intergenic
ATATTACTCAGTAATATAAA+TGG 0.306098 tig0022713:-18362 None:intergenic
AAGCTCTACTTGTACATTAA+TGG 0.307990 tig0022713:+16489 Msa1401640:CDS
AGAATTTAGCAATCAAATAT+TGG 0.329049 tig0022713:+16428 Msa1401640:CDS
AATGTACAAGTAGAGCTTCT+TGG 0.334034 tig0022713:-16484 None:intergenic
TTTGGAATATGTATAATGTT+TGG 0.334729 tig0022713:+18428 Msa1401640:three_prime_UTR
TCCTTCACCAGGTGTTCTAT+AGG 0.343431 tig0022713:-16154 None:intergenic
ATAGTGCTTTCAGTAAGAAT+TGG 0.349180 tig0022713:-18483 None:intergenic
AAATGAAACGCGAAGCATTC+TGG 0.356766 tig0022713:-18393 None:intergenic
CCTCGCAAGGATGCTGGCTC+AGG 0.377210 tig0022713:+18311 Msa1401640:CDS
CCTATATGCACCCATTGTAT+AGG 0.399844 tig0022713:+16685 Msa1401640:CDS
TCTGAGTTGGCTAACAAAAC+AGG 0.406372 tig0022713:+17731 Msa1401640:CDS
GAGCAGCTCCTGCTGGAGAT+TGG 0.410929 tig0022713:-17539 None:intergenic
GATGCACCTCGCAAGGATGC+TGG 0.413454 tig0022713:+18305 Msa1401640:CDS
AGCAGGAGCTGCTCGTGGTC+GGG 0.415509 tig0022713:+17548 Msa1401640:CDS
AACCAGTAAGGGCACAAATT+CGG 0.415853 tig0022713:+16103 Msa1401640:CDS
GTCATTTAAGGGAGATGTAA+TGG 0.417041 tig0022713:-18589 None:intergenic
CATATTCCAAAAGTTCACTA+TGG 0.423619 tig0022713:-18416 None:intergenic
CATTGTATAGGCCAAGCTTA+TGG 0.426540 tig0022713:+16697 Msa1401640:CDS
CCTATACAATGGGTGCATAT+AGG 0.431234 tig0022713:-16685 None:intergenic
AGATCACCGAAGACTTGAAA+AGG 0.434233 tig0022713:+18204 Msa1401640:intron
AGGCATTGGTTAAGAACTCT+TGG 0.435872 tig0022713:+18331 Msa1401640:exon
TGGGAGACAAACAGCGGATA+GGG 0.447908 tig0022713:-15016 None:intergenic
AAATGGGCACACGTGAAGAT+TGG 0.447978 tig0022713:-15237 None:intergenic
CGACCACGAGCAGCTCCTGC+TGG 0.449924 tig0022713:-17546 None:intergenic
CAGCAGGAGCTGCTCGTGGT+CGG 0.460713 tig0022713:+17547 Msa1401640:CDS
TACTTGTACATTAATGGTCC+TGG 0.468494 tig0022713:+16495 Msa1401640:CDS
GCAGCATTTCTACTTGCAGC+TGG 0.472807 tig0022713:+16724 Msa1401640:CDS
AGTGAACTGACCTTCTCAAC+AGG 0.482520 tig0022713:-17758 None:intergenic
GGGGTTGAAACGGTCGTGTA+GGG 0.483114 tig0022713:-15077 None:intergenic
GTGAACGACGATGGAAGGAA+TGG 0.484679 tig0022713:-15036 None:intergenic
AAGGATGCTGGCTCAGGCAT+TGG 0.507073 tig0022713:+18317 Msa1401640:CDS
ATAAGCTTGGCCTATACAAT+GGG 0.511333 tig0022713:-16695 None:intergenic
CTGGTGAAGGAACTTATCAA+TGG 0.511648 tig0022713:+16166 Msa1401640:CDS
CTTCACCAGGTGTTCTATAG+GGG 0.512601 tig0022713:-16152 None:intergenic
CACAAGAGGCCCTTGACTAT+GGG 0.513257 tig0022713:+18243 Msa1401640:CDS
GGCTCATTGACAGAATTGTC+AGG 0.528948 tig0022713:+18264 Msa1401640:CDS
TGAAGATTGGAGTTTCAATC+CGG 0.529739 tig0022713:-15224 None:intergenic
CATAAGCTTGGCCTATACAA+TGG 0.531992 tig0022713:-16696 None:intergenic
ATGGGAGACAAACAGCGGAT+AGG 0.535058 tig0022713:-15017 None:intergenic
CAAATTCGGATGATGCCCAT+TGG 0.537610 tig0022713:+16117 Msa1401640:CDS
AAAGTTGCAAGAGAAAATAG+AGG 0.538516 tig0022713:-18540 None:intergenic
TGGTGAAGGAACTTATCAAT+GGG 0.547080 tig0022713:+16167 Msa1401640:CDS
TGAACGACGATGGAAGGAAT+GGG 0.549143 tig0022713:-15035 None:intergenic
AACAGGCCAGCCTGTTGAGA+AGG 0.549239 tig0022713:+17748 Msa1401640:CDS
ATGCTAACCAGAAACCAGTA+AGG 0.549654 tig0022713:+16091 Msa1401640:CDS
GGTGTTCTATAGGGGACTCT+AGG 0.553085 tig0022713:-16144 None:intergenic
CATTGATAAGTTCCTTCACC+AGG 0.553758 tig0022713:-16165 None:intergenic
AAAAGCTGATGCACCTCGCA+AGG 0.558743 tig0022713:+18298 Msa1401640:CDS
TTGAGGTGAACGACGATGGA+AGG 0.559153 tig0022713:-15041 None:intergenic
CGAGAACGTGTTATCTTCAT+CGG 0.562508 tig0022713:+16390 Msa1401640:CDS
AACTGACCTTCTCAACAGGC+TGG 0.565578 tig0022713:-17754 None:intergenic
TCTACTTGCAGCTGGAGAGA+AGG 0.566048 tig0022713:+16732 Msa1401640:CDS
CCCGTGTTTATTCTCCTCCT+AGG 0.566421 tig0022713:+15099 Msa1401640:CDS
GATCACCGAAGACTTGAAAA+GGG 0.568998 tig0022713:+18205 Msa1401640:intron
TGTCAATGAGCCCATAGTCA+AGG 0.569550 tig0022713:-18253 None:intergenic
CCCTATAGAACACCTGGTGA+AGG 0.570130 tig0022713:+16153 Msa1401640:CDS
GGGGACTCTAGGAGTTCCAA+TGG 0.572526 tig0022713:-16133 None:intergenic
ATGCTGCAAGACCATAAGCT+TGG 0.573039 tig0022713:-16708 None:intergenic
CATGTTGAGGTGAACGACGA+TGG 0.577171 tig0022713:-15045 None:intergenic
GTTTCCACCAAAATCTACTC+CGG 0.585864 tig0022713:+15205 Msa1401640:CDS
TCTCCAGCAGGAGCTGCTCG+TGG 0.586081 tig0022713:+17543 Msa1401640:CDS
TGGAGAACAATTCTTGCAAG+AGG 0.588103 tig0022713:-17519 None:intergenic
GTCAATGAGCCCATAGTCAA+GGG 0.588285 tig0022713:-18252 None:intergenic
TTGACAGAATTGTCAGGCCA+CGG 0.588957 tig0022713:+18270 Msa1401640:CDS
ATTGTTCTCCAATCTCCAGC+AGG 0.591740 tig0022713:+17531 Msa1401640:CDS
AGAGTCCCCTATAGAACACC+TGG 0.598970 tig0022713:+16147 Msa1401640:CDS
TGTACATTAATGGTCCTGGT+GGG 0.599482 tig0022713:+16499 Msa1401640:CDS
AGGAGTCTGCAAGCTTTGCA+TGG 0.619828 tig0022713:-16665 None:intergenic
ATTGTGTGAGATTACCTAGG+AGG 0.620949 tig0022713:-15113 None:intergenic
AAAACGATTTGATGCACAAG+AGG 0.623503 tig0022713:+18229 Msa1401640:CDS
GGGACTCTAGGAGTTCCAAT+GGG 0.623929 tig0022713:-16132 None:intergenic
TTGTACATTAATGGTCCTGG+TGG 0.642823 tig0022713:+16498 Msa1401640:CDS
GTACATTAATGGTCCTGGTG+GGG 0.651895 tig0022713:+16500 Msa1401640:CDS
ACCTAGGAGGAGAATAAACA+CGG 0.655551 tig0022713:-15100 None:intergenic
TCATTACTTACATCCCCACC+AGG 0.676936 tig0022713:-16513 None:intergenic
TGCTAACCAGAAACCAGTAA+GGG 0.683549 tig0022713:+16092 Msa1401640:CDS
CGTCGTTCACCTCAACATGA+CGG 0.689478 tig0022713:+15049 Msa1401640:exon
CCTAGGAGGAGAATAAACAC+GGG 0.702649 tig0022713:-15099 None:intergenic
AGGGTGCGACCGTCATGTTG+AGG 0.710339 tig0022713:-15058 None:intergenic
GTATCGTAGAGAGACATGCA+TGG 0.715789 tig0022713:-16643 None:intergenic
CTAGGAGGAGAATAAACACG+GGG 0.729198 tig0022713:-15098 None:intergenic
AGGAGGAGAATAAACACGGG+GGG 0.747945 tig0022713:-15096 None:intergenic
AAGGAATGGGAGACAAACAG+CGG 0.758063 tig0022713:-15022 None:intergenic
TAGGAGGAGAATAAACACGG+GGG 0.826083 tig0022713:-15097 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCGTTATTATTATTATTTT+CGG + tig0022713:15597-15616 Msa1401640:intron 10.0%
!! AATTGAATTGAAAAATTTGT+GGG - tig0022713:15141-15160 None:intergenic 15.0%
!! AAATTGAATTGAAAAATTTG+TGG - tig0022713:15142-15161 None:intergenic 15.0%
!! AAGAATGAAATTAAGAAAAT+GGG - tig0022713:15256-15275 None:intergenic 15.0%
!!! TATGATTGGTATTTTTTTTA+AGG + tig0022713:15681-15700 Msa1401640:intron 15.0%
!! CTATAAATATAATACATGTT+AGG - tig0022713:17128-17147 None:intergenic 15.0%
!! AAAAGTTCTTGAAAAATATT+TGG + tig0022713:17967-17986 Msa1401640:intron 15.0%
!! ATATTACTCAGTAATATAAA+TGG - tig0022713:18365-18384 None:intergenic 15.0%
!! GAAGAATGAAATTAAGAAAA+TGG - tig0022713:15257-15276 None:intergenic 20.0%
!!! TTTTTTTGTTAATTTCCTGT+TGG + tig0022713:15522-15541 Msa1401640:intron 20.0%
!! AATCATAATATTTAACACCA+CGG - tig0022713:15668-15687 None:intergenic 20.0%
!! TACCTAAAAACATAAAAGTT+TGG - tig0022713:16072-16091 None:intergenic 20.0%
!! AGAATTTAGCAATCAAATAT+TGG + tig0022713:16428-16447 Msa1401640:CDS 20.0%
!! TAAGTAATGATTCTAATGTT+TGG + tig0022713:16526-16545 Msa1401640:intron 20.0%
!! AATATTAAACTAGAAACAAG+AGG - tig0022713:16568-16587 None:intergenic 20.0%
!! TAAAAAGATTTCCTACATTA+CGG + tig0022713:16851-16870 Msa1401640:intron 20.0%
!! TTATATATAACCACAAAAGA+AGG + tig0022713:17060-17079 Msa1401640:intron 20.0%
!! GTATGTTAAAATGAAAAAGT+TGG + tig0022713:17202-17221 Msa1401640:intron 20.0%
!! TGTAATATTCTGTTGTATTA+AGG + tig0022713:17479-17498 Msa1401640:intron 20.0%
!! GTAATATTCTGTTGTATTAA+GGG + tig0022713:17480-17499 Msa1401640:intron 20.0%
!!! TCACTTTAAAATGAAATTCA+TGG + tig0022713:17776-17795 Msa1401640:intron 20.0%
!!! TTTGGAATATGTATAATGTT+TGG + tig0022713:18428-18447 Msa1401640:three_prime_UTR 20.0%
!! AAAGTACCTGAAATTGAAAA+TGG - tig0022713:15317-15336 None:intergenic 25.0%
!!! TTTTCAATTTCAGGTACTTT+TGG + tig0022713:15317-15336 Msa1401640:intron 25.0%
!! TAATGTAAACTCTCAGTTTT+TGG + tig0022713:15358-15377 Msa1401640:CDS 25.0%
!!! AGTTTTTGGTAAAGTTAACA+AGG + tig0022713:15372-15391 Msa1401640:CDS 25.0%
!!! ATTATTATTTTCGGATTAGC+AGG + tig0022713:15606-15625 Msa1401640:intron 25.0%
!! GTGGTGTTAAATATTATGAT+TGG + tig0022713:15667-15686 Msa1401640:intron 25.0%
!!! GTTTTAATCCATACTTTCAT+TGG - tig0022713:15938-15957 None:intergenic 25.0%
!! TGAAAGTATGGATTAAAACA+TGG + tig0022713:15939-15958 Msa1401640:intron 25.0%
!! TGCCAAACTTTTATGTTTTT+AGG + tig0022713:16067-16086 Msa1401640:intron 25.0%
! AAAAAGATTTCCTACATTAC+GGG + tig0022713:16852-16871 Msa1401640:intron 25.0%
! TTGCATTCTCAATATAATCA+AGG + tig0022713:16892-16911 Msa1401640:intron 25.0%
! ATTCTCAATATAATCAAGGA+TGG + tig0022713:16896-16915 Msa1401640:intron 25.0%
! ATGATCCTTAATCATATTTG+TGG - tig0022713:16987-17006 None:intergenic 25.0%
! TTTCCATAATTTCAAACTAC+CGG - tig0022713:17233-17252 None:intergenic 25.0%
!! TATTTGGAATAAGATTGTGA+TGG - tig0022713:17318-17337 None:intergenic 25.0%
! TGTGACATTCATTTCTAAAT+TGG + tig0022713:17366-17385 Msa1401640:intron 25.0%
!! GAATTTAACTTCATCTACAA+AGG - tig0022713:17997-18016 None:intergenic 25.0%
!!! TCTTAGAGTTCATTTTTTCA+TGG + tig0022713:18115-18134 Msa1401640:intron 25.0%
!!! TCATAATGAGTTTTATTTGC+TGG + tig0022713:18155-18174 Msa1401640:intron 25.0%
! CATTCACCATTTTCAATTTC+AGG + tig0022713:15308-15327 Msa1401640:intron 30.0%
TTAACAAGGTTCTCAATTTC+AGG + tig0022713:15386-15405 Msa1401640:intron 30.0%
CAAGTAATTGATTATGTCAC+TGG + tig0022713:15457-15476 Msa1401640:intron 30.0%
! ATCACAAATGTAATTTTGCG+AGG + tig0022713:15889-15908 Msa1401640:intron 30.0%
TTCTTTGACCAATGAAAGTA+TGG + tig0022713:15927-15946 Msa1401640:intron 30.0%
AAAACATGGTTTATGTCACT+TGG + tig0022713:15953-15972 Msa1401640:intron 30.0%
! AAACATGGTTTATGTCACTT+GGG + tig0022713:15954-15973 Msa1401640:intron 30.0%
!! CTTATCAATGGGTTGATTTA+TGG + tig0022713:16178-16197 Msa1401640:CDS 30.0%
CAAGATGTAACAACTTACAA+GGG - tig0022713:16208-16227 None:intergenic 30.0%
TCAAGATGTAACAACTTACA+AGG - tig0022713:16209-16228 None:intergenic 30.0%
AAAAGACGAAAATTAACTCG+AGG - tig0022713:16325-16344 None:intergenic 30.0%
AAGCTCTACTTGTACATTAA+TGG + tig0022713:16489-16508 Msa1401640:CDS 30.0%
GTAATGATTCTAATGTTTGG+TGG + tig0022713:16529-16548 Msa1401640:intron 30.0%
TTAAATAGCTGATCGTCAAA+AGG - tig0022713:16591-16610 None:intergenic 30.0%
AAGTTGTATTAACAGACAGT+GGG - tig0022713:16769-16788 None:intergenic 30.0%
AAGTTAAACTTGTCATAGCA+CGG + tig0022713:16793-16812 Msa1401640:intron 30.0%
GTATAAAGTCCATTCAACAA+AGG - tig0022713:16922-16941 None:intergenic 30.0%
TACATAGATATCTCTTCTGT+AGG - tig0022713:16948-16967 None:intergenic 30.0%
TCCTTAATCATATTTGTGGT+GGG - tig0022713:16983-17002 None:intergenic 30.0%
ATCCTTAATCATATTTGTGG+TGG - tig0022713:16984-17003 None:intergenic 30.0%
! AAACTCATTTCCTTCTTTTG+TGG - tig0022713:17073-17092 None:intergenic 30.0%
ATGATCATTCATGACAGTTA+AGG - tig0022713:17156-17175 None:intergenic 30.0%
GTTAAAATGAAAAAGTTGGC+AGG + tig0022713:17206-17225 Msa1401640:intron 30.0%
TGACATCTATCTCAGAAAAA+AGG - tig0022713:17582-17601 None:intergenic 30.0%
AACATTGTGAAAACTCTTTC+AGG + tig0022713:17652-17671 Msa1401640:intron 30.0%
! AGATTATCTTTTCTCTGAGT+TGG + tig0022713:17718-17737 Msa1401640:CDS 30.0%
CATACAGAGAAGAAGTTATT+TGG - tig0022713:17944-17963 None:intergenic 30.0%
AATGAAGCTTAGATATCGAA+AGG - tig0022713:18056-18075 None:intergenic 30.0%
!! GAACTCTAAGATACACAAAA+TGG - tig0022713:18106-18125 None:intergenic 30.0%
!!! TTTTACCCTTTTCAAGTCTT+CGG - tig0022713:18213-18232 None:intergenic 30.0%
! TCATTTCCATAGTGAACTTT+TGG + tig0022713:18410-18429 Msa1401640:three_prime_UTR 30.0%
CATATTCCAAAAGTTCACTA+TGG - tig0022713:18419-18438 None:intergenic 30.0%
ATAGTGCTTTCAGTAAGAAT+TGG - tig0022713:18486-18505 None:intergenic 30.0%
AAAGTTGCAAGAGAAAATAG+AGG - tig0022713:18543-18562 None:intergenic 30.0%
! TTTTGGTGGAAACACTGAAA+TGG - tig0022713:15198-15217 None:intergenic 35.0%
! TTTCAATCCGGAGTAGATTT+TGG - tig0022713:15215-15234 None:intergenic 35.0%
TGAAGATTGGAGTTTCAATC+CGG - tig0022713:15227-15246 None:intergenic 35.0%
! AGGTTCTCAATTTCAGGTAA+TGG + tig0022713:15392-15411 Msa1401640:intron 35.0%
! GGTTCTCAATTTCAGGTAAT+GGG + tig0022713:15393-15412 Msa1401640:intron 35.0%
!! AATTTCAGGTAATGGGTTGT+GGG + tig0022713:15400-15419 Msa1401640:intron 35.0%
! GATACATTTTTCCTAGATGC+TGG + tig0022713:15569-15588 Msa1401640:intron 35.0%
ATGATATTTGTCGCGAGAAA+TGG + tig0022713:15707-15726 Msa1401640:intron 35.0%
TGATATTTGTCGCGAGAAAT+GGG + tig0022713:15708-15727 Msa1401640:intron 35.0%
TAATTAGTTGCTTCCCAAGA+GGG + tig0022713:15772-15791 Msa1401640:intron 35.0%
TAACTGATTAAGATCTCTCC+TGG - tig0022713:15806-15825 None:intergenic 35.0%
!! CTTTAATTTGTGAGTCCTTC+AGG + tig0022713:15827-15846 Msa1401640:intron 35.0%
TGGTGAAGGAACTTATCAAT+GGG + tig0022713:16167-16186 Msa1401640:CDS 35.0%
TTGTACGCTTATCTAAGAAC+TGG + tig0022713:16245-16264 Msa1401640:intron 35.0%
TGGTGAAGGAACATAGTAAT+GGG + tig0022713:16265-16284 Msa1401640:intron 35.0%
! GTTACTTTATGACGTAGTCA+TGG + tig0022713:16287-16306 Msa1401640:intron 35.0%
AATGTACAAGTAGAGCTTCT+TGG - tig0022713:16487-16506 None:intergenic 35.0%
TACTTGTACATTAATGGTCC+TGG + tig0022713:16495-16514 Msa1401640:CDS 35.0%
ATAAGCTTGGCCTATACAAT+GGG - tig0022713:16698-16717 None:intergenic 35.0%
CAAGTTGTATTAACAGACAG+TGG - tig0022713:16770-16789 None:intergenic 35.0%
AGTTAAACTTGTCATAGCAC+GGG + tig0022713:16794-16813 Msa1401640:intron 35.0%
CCTTAATCATATTTGTGGTG+GGG - tig0022713:16982-17001 None:intergenic 35.0%
GGAGTACAAAGAGGAATATT+TGG - tig0022713:17334-17353 None:intergenic 35.0%
AATGTCACAACAAAGCAGAA+TGG - tig0022713:17355-17374 None:intergenic 35.0%
AGTCAAAGACTCAATACTAC+AGG - tig0022713:17415-17434 None:intergenic 35.0%
! TTGAGTCTTTGACTTCTCTA+AGG + tig0022713:17421-17440 Msa1401640:intron 35.0%
ATCTATCTCAGAAAAAAGGC+AGG - tig0022713:17578-17597 None:intergenic 35.0%
ACCAAATAACTTCTTCTCTG+TGG + tig0022713:17858-17877 Msa1401640:intron 35.0%
TCCACAGAGAAGAAGTTATT+TGG - tig0022713:17862-17881 None:intergenic 35.0%
!! CAATTGACTCTGCTTTTACA+AGG + tig0022713:18016-18035 Msa1401640:intron 35.0%
AAAACGATTTGATGCACAAG+AGG + tig0022713:18229-18248 Msa1401640:CDS 35.0%
ACCTAGGAGGAGAATAAACA+CGG - tig0022713:15103-15122 None:intergenic 40.0%
ATTGTGTGAGATTACCTAGG+AGG - tig0022713:15116-15135 None:intergenic 40.0%
GAGATTGTGTGAGATTACCT+AGG - tig0022713:15119-15138 None:intergenic 40.0%
GTTTCCACCAAAATCTACTC+CGG + tig0022713:15205-15224 Msa1401640:CDS 40.0%
!! CAATTTCAGGTAATGGGTTG+TGG + tig0022713:15399-15418 Msa1401640:intron 40.0%
! CAAAAGCATAAGTGGTAGCA+CGG + tig0022713:15735-15754 Msa1401640:intron 40.0%
CTAATTAGTTGCTTCCCAAG+AGG + tig0022713:15771-15790 Msa1401640:intron 40.0%
ATGCTAACCAGAAACCAGTA+AGG + tig0022713:16091-16110 Msa1401640:CDS 40.0%
TGCTAACCAGAAACCAGTAA+GGG + tig0022713:16092-16111 Msa1401640:CDS 40.0%
! AACCAGTAAGGGCACAAATT+CGG + tig0022713:16103-16122 Msa1401640:CDS 40.0%
CATTGATAAGTTCCTTCACC+AGG - tig0022713:16168-16187 None:intergenic 40.0%
CTGGTGAAGGAACTTATCAA+TGG + tig0022713:16166-16185 Msa1401640:CDS 40.0%
GCTTATCTAAGAACTGGTGA+AGG + tig0022713:16251-16270 Msa1401640:intron 40.0%
CTGGTGAAGGAACATAGTAA+TGG + tig0022713:16264-16283 Msa1401640:intron 40.0%
CGAGAACGTGTTATCTTCAT+CGG + tig0022713:16390-16409 Msa1401640:CDS 40.0%
TTGTACATTAATGGTCCTGG+TGG + tig0022713:16498-16517 Msa1401640:CDS 40.0%
TGTACATTAATGGTCCTGGT+GGG + tig0022713:16499-16518 Msa1401640:CDS 40.0%
CCTATACAATGGGTGCATAT+AGG - tig0022713:16688-16707 None:intergenic 40.0%
CCTATATGCACCCATTGTAT+AGG + tig0022713:16685-16704 Msa1401640:CDS 40.0%
CATAAGCTTGGCCTATACAA+TGG - tig0022713:16699-16718 None:intergenic 40.0%
CATTGTATAGGCCAAGCTTA+TGG + tig0022713:16697-16716 Msa1401640:CDS 40.0%
GTTAAACTTGTCATAGCACG+GGG + tig0022713:16795-16814 Msa1401640:intron 40.0%
CCCCACCACAAATATGATTA+AGG + tig0022713:16979-16998 Msa1401640:intron 40.0%
ACATGTTAGGTACTCACCTT+TGG - tig0022713:17115-17134 None:intergenic 40.0%
! CAATCGACAGTTGATATTGC+TGG - tig0022713:17183-17202 None:intergenic 40.0%
AATGAAAAAGTTGGCAGGTC+CGG + tig0022713:17211-17230 Msa1401640:intron 40.0%
! GGTCCGGTAGTTTGAAATTA+TGG + tig0022713:17227-17246 Msa1401640:intron 40.0%
AAGCAGAATGGAGTACAAAG+AGG - tig0022713:17343-17362 None:intergenic 40.0%
TGGAGAACAATTCTTGCAAG+AGG - tig0022713:17522-17541 None:intergenic 40.0%
! TCTGAGTTGGCTAACAAAAC+AGG + tig0022713:17731-17750 Msa1401640:CDS 40.0%
TCTTCGGTGATCTGAAGATA+TGG - tig0022713:18197-18216 None:intergenic 40.0%
AGATCACCGAAGACTTGAAA+AGG + tig0022713:18204-18223 Msa1401640:intron 40.0%
GATCACCGAAGACTTGAAAA+GGG + tig0022713:18205-18224 Msa1401640:intron 40.0%
!! AGGCATTGGTTAAGAACTCT+TGG + tig0022713:18331-18350 Msa1401640:exon 40.0%
! AAATGAAACGCGAAGCATTC+TGG - tig0022713:18396-18415 None:intergenic 40.0%
AAGGAATGGGAGACAAACAG+CGG - tig0022713:15025-15044 None:intergenic 45.0%
TGAACGACGATGGAAGGAAT+GGG - tig0022713:15038-15057 None:intergenic 45.0%
ATAAACACGGGGGGTTGAAA+CGG - tig0022713:15090-15109 None:intergenic 45.0%
TAGGAGGAGAATAAACACGG+GGG - tig0022713:15100-15119 None:intergenic 45.0%
CTAGGAGGAGAATAAACACG+GGG - tig0022713:15101-15120 None:intergenic 45.0%
CCTAGGAGGAGAATAAACAC+GGG - tig0022713:15102-15121 None:intergenic 45.0%
! CAATCCGGAGTAGATTTTGG+TGG - tig0022713:15212-15231 None:intergenic 45.0%
AAATGGGCACACGTGAAGAT+TGG - tig0022713:15240-15259 None:intergenic 45.0%
CCATTGTGTTTGCATCCAAC+AGG - tig0022713:15540-15559 None:intergenic 45.0%
CCTGTTGGATGCAAACACAA+TGG + tig0022713:15537-15556 Msa1401640:intron 45.0%
AACGATTGCTTCCAGCATCT+AGG - tig0022713:15583-15602 None:intergenic 45.0%
! TGGGATCGCAAAAGCATAAG+TGG + tig0022713:15727-15746 Msa1401640:intron 45.0%
TGATTAAGATCTCTCCTGGC+CGG - tig0022713:15802-15821 None:intergenic 45.0%
!! TTTGTGCCCTTACTGGTTTC+TGG - tig0022713:16101-16120 None:intergenic 45.0%
ATCCGAATTTGTGCCCTTAC+TGG - tig0022713:16108-16127 None:intergenic 45.0%
CAAATTCGGATGATGCCCAT+TGG + tig0022713:16117-16136 Msa1401640:CDS 45.0%
CTTCACCAGGTGTTCTATAG+GGG - tig0022713:16155-16174 None:intergenic 45.0%
CCTTCACCAGGTGTTCTATA+GGG - tig0022713:16156-16175 None:intergenic 45.0%
TCCTTCACCAGGTGTTCTAT+AGG - tig0022713:16157-16176 None:intergenic 45.0%
GTACATTAATGGTCCTGGTG+GGG + tig0022713:16500-16519 Msa1401640:CDS 45.0%
TCATTACTTACATCCCCACC+AGG - tig0022713:16516-16535 None:intergenic 45.0%
GTATCGTAGAGAGACATGCA+TGG - tig0022713:16646-16665 None:intergenic 45.0%
ATGCTGCAAGACCATAAGCT+TGG - tig0022713:16711-16730 None:intergenic 45.0%
TTGTCATAGCACGGGGTTTA+AGG + tig0022713:16802-16821 Msa1401640:intron 45.0%
TCCTACATTACGGGACTGTA+CGG + tig0022713:16861-16880 Msa1401640:intron 45.0%
CAAGGATGGCCTTTGTTGAA+TGG + tig0022713:16910-16929 Msa1401640:intron 45.0%
TTCTCTACTTCTGTCGCCAA+AGG + tig0022713:17096-17115 Msa1401640:intron 45.0%
ATTGTTCTCCAATCTCCAGC+AGG + tig0022713:17531-17550 Msa1401640:CDS 45.0%
AGTGAACTGACCTTCTCAAC+AGG - tig0022713:17761-17780 None:intergenic 45.0%
GTCAATGAGCCCATAGTCAA+GGG - tig0022713:18255-18274 None:intergenic 45.0%
TGTCAATGAGCCCATAGTCA+AGG - tig0022713:18256-18275 None:intergenic 45.0%
GGCTCATTGACAGAATTGTC+AGG + tig0022713:18264-18283 Msa1401640:CDS 45.0%
TTGACAGAATTGTCAGGCCA+CGG + tig0022713:18270-18289 Msa1401640:CDS 45.0%
TGGGAGACAAACAGCGGATA+GGG - tig0022713:15019-15038 None:intergenic 50.0%
ATGGGAGACAAACAGCGGAT+AGG - tig0022713:15020-15039 None:intergenic 50.0%
GTGAACGACGATGGAAGGAA+TGG - tig0022713:15039-15058 None:intergenic 50.0%
TTGAGGTGAACGACGATGGA+AGG - tig0022713:15044-15063 None:intergenic 50.0%
CATGTTGAGGTGAACGACGA+TGG - tig0022713:15048-15067 None:intergenic 50.0%
CGTCGTTCACCTCAACATGA+CGG + tig0022713:15049-15068 Msa1401640:exon 50.0%
AGGAGGAGAATAAACACGGG+GGG - tig0022713:15099-15118 None:intergenic 50.0%
CCCGTGTTTATTCTCCTCCT+AGG + tig0022713:15099-15118 Msa1401640:CDS 50.0%
AACCACGATCGTGTTCGTAG+AGG + tig0022713:15637-15656 Msa1401640:intron 50.0%
TGTTCGTAGAGGACAAACCG+TGG + tig0022713:15648-15667 Msa1401640:intron 50.0%
! TGCTTCCCAAGAGGGTTTTC+CGG + tig0022713:15780-15799 Msa1401640:intron 50.0%
CACGACAAACTGTCTCCTGA+AGG - tig0022713:15845-15864 None:intergenic 50.0%
! GGGACTCTAGGAGTTCCAAT+GGG - tig0022713:16135-16154 None:intergenic 50.0%
GGTGTTCTATAGGGGACTCT+AGG - tig0022713:16147-16166 None:intergenic 50.0%
AGAGTCCCCTATAGAACACC+TGG + tig0022713:16147-16166 Msa1401640:CDS 50.0%
CCCTATAGAACACCTGGTGA+AGG + tig0022713:16153-16172 Msa1401640:CDS 50.0%
AGGAGTCTGCAAGCTTTGCA+TGG - tig0022713:16668-16687 None:intergenic 50.0%
GCAGCATTTCTACTTGCAGC+TGG + tig0022713:16724-16743 Msa1401640:CDS 50.0%
TCTACTTGCAGCTGGAGAGA+AGG + tig0022713:16732-16751 Msa1401640:CDS 50.0%
ACCGTACAGTCCCGTAATGT+AGG - tig0022713:16865-16884 None:intergenic 50.0%
AACTGACCTTCTCAACAGGC+TGG - tig0022713:17757-17776 None:intergenic 50.0%
CACAAGAGGCCCTTGACTAT+GGG + tig0022713:18243-18262 Msa1401640:CDS 50.0%
AAAAGCTGATGCACCTCGCA+AGG + tig0022713:18298-18317 Msa1401640:CDS 50.0%
GGGGTTGAAACGGTCGTGTA+GGG - tig0022713:15080-15099 None:intergenic 55.0%
GTCCTCTACGAACACGATCG+TGG - tig0022713:15642-15661 None:intergenic 55.0%
! GGGGACTCTAGGAGTTCCAA+TGG - tig0022713:16136-16155 None:intergenic 55.0%
AACAGGCCAGCCTGTTGAGA+AGG + tig0022713:17748-17767 Msa1401640:CDS 55.0%
GCACAAGAGGCCCTTGACTA+TGG + tig0022713:18242-18261 Msa1401640:CDS 55.0%
! GCATCAGCTTTTATGCGCCG+TGG - tig0022713:18290-18309 None:intergenic 55.0%
!! AAGGATGCTGGCTCAGGCAT+TGG + tig0022713:18317-18336 Msa1401640:CDS 55.0%
AGGGTGCGACCGTCATGTTG+AGG - tig0022713:15061-15080 None:intergenic 60.0%
GGGGGTTGAAACGGTCGTGT+AGG - tig0022713:15081-15100 None:intergenic 60.0%
CCTGGCCGGAAAACCCTCTT+GGG - tig0022713:15788-15807 None:intergenic 60.0%
TCCTGGCCGGAAAACCCTCT+TGG - tig0022713:15789-15808 None:intergenic 60.0%
GAGCAGCTCCTGCTGGAGAT+TGG - tig0022713:17542-17561 None:intergenic 60.0%
GATGCACCTCGCAAGGATGC+TGG + tig0022713:18305-18324 Msa1401640:CDS 60.0%
! CCCAAGAGGGTTTTCCGGCC+AGG + tig0022713:15785-15804 Msa1401640:intron 65.0%
TCTCCAGCAGGAGCTGCTCG+TGG + tig0022713:17543-17562 Msa1401640:CDS 65.0%
CAGCAGGAGCTGCTCGTGGT+CGG + tig0022713:17547-17566 Msa1401640:CDS 65.0%
AGCAGGAGCTGCTCGTGGTC+GGG + tig0022713:17548-17567 Msa1401640:CDS 65.0%
CCTGAGCCAGCATCCTTGCG+AGG - tig0022713:18314-18333 None:intergenic 65.0%
!! CCTCGCAAGGATGCTGGCTC+AGG + tig0022713:18311-18330 Msa1401640:CDS 65.0%
CGACCACGAGCAGCTCCTGC+TGG - tig0022713:17549-17568 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0022713 gene 14994 18605 14994 ID=Msa1401640;Name=Msa1401640
tig0022713 mRNA 14994 18605 14994 ID=Msa1401640-mRNA-1;Parent=Msa1401640;Name=Msa1401640-mRNA-1;_AED=0.15;_eAED=0.15;_QI=71|0.77|0.7|1|0.55|0.8|10|262|282
tig0022713 exon 14994 15120 14994 ID=Msa1401640-mRNA-1:exon:18480;Parent=Msa1401640-mRNA-1
tig0022713 exon 15204 15247 15204 ID=Msa1401640-mRNA-1:exon:18481;Parent=Msa1401640-mRNA-1
tig0022713 exon 15330 15393 15330 ID=Msa1401640-mRNA-1:exon:18482;Parent=Msa1401640-mRNA-1
tig0022713 exon 15849 15854 15849 ID=Msa1401640-mRNA-1:exon:18483;Parent=Msa1401640-mRNA-1
tig0022713 exon 16089 16209 16089 ID=Msa1401640-mRNA-1:exon:18484;Parent=Msa1401640-mRNA-1
tig0022713 exon 16387 16524 16387 ID=Msa1401640-mRNA-1:exon:18485;Parent=Msa1401640-mRNA-1
tig0022713 exon 16637 16753 16637 ID=Msa1401640-mRNA-1:exon:18486;Parent=Msa1401640-mRNA-1
tig0022713 exon 17501 17569 17501 ID=Msa1401640-mRNA-1:exon:18487;Parent=Msa1401640-mRNA-1
tig0022713 exon 17674 17769 17674 ID=Msa1401640-mRNA-1:exon:18488;Parent=Msa1401640-mRNA-1
tig0022713 exon 18206 18605 18206 ID=Msa1401640-mRNA-1:exon:18489;Parent=Msa1401640-mRNA-1
tig0022713 five_prime_UTR 14994 15064 14994 ID=Msa1401640-mRNA-1:five_prime_utr;Parent=Msa1401640-mRNA-1
tig0022713 CDS 15065 15120 15065 ID=Msa1401640-mRNA-1:cds;Parent=Msa1401640-mRNA-1
tig0022713 CDS 15204 15247 15204 ID=Msa1401640-mRNA-1:cds;Parent=Msa1401640-mRNA-1
tig0022713 CDS 15330 15393 15330 ID=Msa1401640-mRNA-1:cds;Parent=Msa1401640-mRNA-1
tig0022713 CDS 15849 15854 15849 ID=Msa1401640-mRNA-1:cds;Parent=Msa1401640-mRNA-1
tig0022713 CDS 16089 16209 16089 ID=Msa1401640-mRNA-1:cds;Parent=Msa1401640-mRNA-1
tig0022713 CDS 16387 16524 16387 ID=Msa1401640-mRNA-1:cds;Parent=Msa1401640-mRNA-1
tig0022713 CDS 16637 16753 16637 ID=Msa1401640-mRNA-1:cds;Parent=Msa1401640-mRNA-1
tig0022713 CDS 17501 17569 17501 ID=Msa1401640-mRNA-1:cds;Parent=Msa1401640-mRNA-1
tig0022713 CDS 17674 17769 17674 ID=Msa1401640-mRNA-1:cds;Parent=Msa1401640-mRNA-1
tig0022713 CDS 18206 18343 18206 ID=Msa1401640-mRNA-1:cds;Parent=Msa1401640-mRNA-1
tig0022713 three_prime_UTR 18344 18605 18344 ID=Msa1401640-mRNA-1:three_prime_utr;Parent=Msa1401640-mRNA-1
Gene Sequence

>Msa1401640

ATGACGGTCGCACCCTACACGACCGTTTCAACCCCCCGTGTTTATTCTCCTCCTAGTGTTTCCACCAAAATCTACTCCGGATTGAAACTCCAATCTTCACGTACTTTTGGAGCGTCTTCAATTTCATCTAATGTAAACTCTCAGTTTTTGGTAAAGTTAACAAGGAGACAGTATGCTAACCAGAAACCAGTAAGGGCACAAATTCGGATGATGCCCATTGGAACTCCTAGAGTCCCCTATAGAACACCTGGTGAAGGAACTTATCAATGGGTTGATTTATGGAATGCCCTTTATCGAGAACGTGTTATCTTCATCGGACAAGAGATAGATGAAGAATTTAGCAATCAAATATTGGCAACGTTGCTGTATCTTGACAGTGTAGATAACTCCAAGAAGCTCTACTTGTACATTAATGGTCCTGGTGGGGATCTTACGCCATGCATGTCTCTCTACGATACCATGCAAAGCTTGCAGACTCCTATATGCACCCATTGTATAGGCCAAGCTTATGGTCTTGCAGCATTTCTACTTGCAGCTGGAGAGAAGGGAAATCGTACTGCAATGCCTCTTGCAAGAATTGTTCTCCAATCTCCAGCAGGAGCTGCTCGTGGTCGGGCTGATGACATACAAAATGAAGCAACTGAACTTCTTAGAATCAGAGATTATCTTTTCTCTGAGTTGGCTAACAAAACAGGCCAGCCTGTTGAGAAGATCACCGAAGACTTGAAAAGGGTAAAACGATTTGATGCACAAGAGGCCCTTGACTATGGGCTCATTGACAGAATTGTCAGGCCACGGCGCATAAAAGCTGATGCACCTCGCAAGGATGCTGGCTCAGGCATTGGTTAA

Protein sequence

>Msa1401640

MTVAPYTTVSTPRVYSPPSVSTKIYSGLKLQSSRTFGASSISSNVNSQFLVKLTRRQYANQKPVRAQIRMMPIGTPRVPYRTPGEGTYQWVDLWNALYRERVIFIGQEIDEEFSNQILATLLYLDSVDNSKKLYLYINGPGGDLTPCMSLYDTMQSLQTPICTHCIGQAYGLAAFLLAAGEKGNRTAMPLARIVLQSPAGAARGRADDIQNEATELLRIRDYLFSELANKTGQPVEKITEDLKRVKRFDAQEALDYGLIDRIVRPRRIKADAPRKDAGSGIG*