AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0581490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581490 MtrunA17_Chr1g0152171 94.318 264 8 3 1 258 1 263 6.93e-177 487
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0581490 AT1G44920.1 59.459 259 92 6 7 258 6 258 6.64e-98 287

Find 62 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTCATTTCTTCTTTCTA+TGG 0.204630 4_1:+86883982 None:intergenic
GTGCTTCTGGTGTTGAATTT+AGG 0.280781 4_1:+86883814 None:intergenic
AGAGATTGAAGTGATGAATT+TGG 0.292633 4_1:+86883864 None:intergenic
AGCCATATCCAATCTCCTTT+TGG 0.303381 4_1:-86883910 Msa0581490:CDS
TCAGGCCATTTGCCTAACTA+TGG 0.307108 4_1:-86881374 Msa0581490:CDS
GGCAGATAGGAATTGCAATA+AGG 0.319499 4_1:-86881406 Msa0581490:intron
GGGTCTAATGAAGGTGCTTC+TGG 0.321486 4_1:+86883801 None:intergenic
CCAAACATACCAGCTATAAA+AGG 0.329020 4_1:+86883357 None:intergenic
GTCTATGTTTCCTTCAGCTT+TGG 0.332013 4_1:+86883762 None:intergenic
TGCAGTAGCAATGACGCCTT+TGG 0.338369 4_1:+86882816 None:intergenic
GAATTTAGGTGGTTGATTAA+TGG 0.352205 4_1:+86883828 None:intergenic
AGGCGTGTAGCTCTGTTTGC+TGG 0.388205 4_1:-86883474 Msa0581490:CDS
CTCCAAAAGGAGATTGGATA+TGG 0.397818 4_1:+86883908 None:intergenic
CTCTTCTTACTATTGTCAAC+TGG 0.401605 4_1:+86881278 None:intergenic
GATTTAAATCATTTGTATCA+TGG 0.406563 4_1:-86880880 Msa0581490:three_prime_UTR
GCAATAAGGGCAGCAAAATC+AGG 0.408856 4_1:-86881392 Msa0581490:CDS
TGACAAGGATGTTCCATTAG+AGG 0.413397 4_1:-86883680 Msa0581490:CDS
CTAGCAGATCATAGTGCAAA+TGG 0.415936 4_1:+86880851 None:intergenic
ATACGAGATGAAGAGTTGTT+TGG 0.425511 4_1:+86883637 None:intergenic
TGAAATGTGACGATATTAGA+AGG 0.428150 4_1:-86880717 Msa0581490:three_prime_UTR
TCGTAAAGATAAACGTTAAG+TGG 0.434939 4_1:+86880749 None:intergenic
TTAGGTGCTTACTTCCTTGG+AGG 0.440953 4_1:-86882874 Msa0581490:CDS
AACTGAATAACACCCTCTAA+TGG 0.444731 4_1:+86883667 None:intergenic
GTTTGCTGGTGGTGATGTGT+TGG 0.448054 4_1:-86883460 Msa0581490:CDS
AACGATCGATTAAATGTTCA+AGG 0.454298 4_1:-86881062 Msa0581490:three_prime_UTR
ACATGGCTCCAAAAGGAGAT+TGG 0.458415 4_1:+86883902 None:intergenic
AACTGTAATGTATATGCATC+AGG 0.461805 4_1:-86881039 Msa0581490:three_prime_UTR
GCAGATAGGAATTGCAATAA+GGG 0.466853 4_1:-86881405 Msa0581490:intron
TCATTGCTACTGCAAAATCA+TGG 0.467859 4_1:-86882807 Msa0581490:CDS
CAAAACCATAGTTAGGCAAA+TGG 0.490644 4_1:+86881369 None:intergenic
CTGCAAAATCATGGGCTGTA+GGG 0.498651 4_1:-86882798 Msa0581490:CDS
ACTGCAAAATCATGGGCTGT+AGG 0.508711 4_1:-86882799 Msa0581490:CDS
CATTTGCACTATGATCTGCT+AGG 0.510585 4_1:-86880850 Msa0581490:three_prime_UTR
ACTAATACAAAACCATAGTT+AGG 0.511253 4_1:+86881362 None:intergenic
GGTTGAAGAGTTTGAAAACA+TGG 0.526188 4_1:+86883885 None:intergenic
GCAGTAGCAATGACGCCTTT+GGG 0.531373 4_1:+86882817 None:intergenic
TTTGAAAACATGGCTCCAAA+AGG 0.539077 4_1:+86883895 None:intergenic
TTGATCATTGGCAAAAGAAG+AGG 0.542935 4_1:+86883717 None:intergenic
AGCTTCTCACATCATTAGTA+CGG 0.543490 4_1:-86881092 Msa0581490:CDS
CTTCTGGTGTTGAATTTAGG+TGG 0.547043 4_1:+86883817 None:intergenic
TAGCAGATCATAGTGCAAAT+GGG 0.555937 4_1:+86880852 None:intergenic
GAAGATGGGCGTGGAATGAA+TGG 0.558299 4_1:-86882844 Msa0581490:CDS
TGATCATTGGCAAAAGAAGA+GGG 0.564070 4_1:+86883718 None:intergenic
TGATTAATGGAGAATTGTTG+TGG 0.564881 4_1:+86883841 None:intergenic
TTGGCTAGTGTAAGATGCAA+GGG 0.569643 4_1:+86883781 None:intergenic
CATTGCTACTGCAAAATCAT+GGG 0.569767 4_1:-86882806 Msa0581490:CDS
ACTATTGTCAACTGGAAGAA+CGG 0.577024 4_1:+86881286 None:intergenic
TTTGGCTAGTGTAAGATGCA+AGG 0.583472 4_1:+86883780 None:intergenic
TCAGATCACATGATGATGAA+AGG 0.584062 4_1:-86880806 Msa0581490:three_prime_UTR
GACAAGGATGTTCCATTAGA+GGG 0.603592 4_1:-86883679 Msa0581490:CDS
AAGATGCAAGGGTCTAATGA+AGG 0.606568 4_1:+86883792 None:intergenic
GATACAAAGAGATTTAGCTA+TGG 0.610588 4_1:+86881006 None:intergenic
TCACATCATTAGTACGGCGG+TGG 0.611971 4_1:-86881086 Msa0581490:CDS
CTTACACTAGCCAAAGCTGA+AGG 0.620752 4_1:-86883772 Msa0581490:CDS
CATCTTCACTAAAACCTCCA+AGG 0.627812 4_1:+86882860 None:intergenic
ACAATTGGAAGATATAGTCA+TGG 0.628651 4_1:-86883420 Msa0581490:CDS
CGTGTAGCTCTGTTTGCTGG+TGG 0.629973 4_1:-86883471 Msa0581490:CDS
GGAATGAATGGTCTACCCAA+AGG 0.648080 4_1:-86882832 Msa0581490:CDS
TTCTCACATCATTAGTACGG+CGG 0.687718 4_1:-86881089 Msa0581490:CDS
GATCACATGATGATGAAAGG+AGG 0.689143 4_1:-86880803 Msa0581490:three_prime_UTR
AAAGTTCAAAGGGACTTCCG+CGG 0.704061 4_1:+86881243 None:intergenic
AAGAGTGATGTCTATCGCCG+CGG 0.738642 4_1:-86881260 Msa0581490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AACATTTTTGTTTTTATTTT+GGG - chr4_1:86881750-86881769 Msa0581490:intron 10.0%
!! AAAATATAAAGTTTCATTTA+TGG + chr4_1:86883021-86883040 None:intergenic 10.0%
!! AAAAAAATGATCATAATATG+TGG - chr4_1:86880695-86880714 Msa0581490:three_prime_UTR 15.0%
!!! GTTGTTTTTTTATGTAAAAA+TGG - chr4_1:86881138-86881157 Msa0581490:intron 15.0%
!!! GAACATTTTTGTTTTTATTT+TGG - chr4_1:86881749-86881768 Msa0581490:intron 15.0%
!!! ACATTTTTGTTTTTATTTTG+GGG - chr4_1:86881751-86881770 Msa0581490:intron 15.0%
!! TGAAAATTTAAAAAAGAATG+AGG - chr4_1:86882663-86882682 Msa0581490:intron 15.0%
!! GAAAATTTAAAAAAGAATGA+GGG - chr4_1:86882664-86882683 Msa0581490:intron 15.0%
!! AAAATTTAAAAAAGAATGAG+GGG - chr4_1:86882665-86882684 Msa0581490:intron 15.0%
!!! TTTAATCTTTTTTAACTTCT+TGG - chr4_1:86883280-86883299 Msa0581490:intron 15.0%
!!! ACTTTATGTGAATTTTTATC+TGG - chr4_1:86881163-86881182 Msa0581490:intron 20.0%
!!! CTTTATGTGAATTTTTATCT+GGG - chr4_1:86881164-86881183 Msa0581490:intron 20.0%
!!! ATGATAGATTTGAAATTTGT+TGG - chr4_1:86881781-86881800 Msa0581490:intron 20.0%
!!! ATGTCTTTTGTTAGTAAATT+TGG - chr4_1:86882146-86882165 Msa0581490:intron 20.0%
!! TACAACTTCTGTTAATAATT+TGG - chr4_1:86882213-86882232 Msa0581490:intron 20.0%
!! AAAAATGCAGTAATTCTTTA+GGG - chr4_1:86882776-86882795 Msa0581490:intron 20.0%
!! GATTTAAATCATTTGTATCA+TGG - chr4_1:86883827-86883846 Msa0581490:CDS 20.0%
! TTGTTCATTTCTTCTTTCTA+TGG + chr4_1:86880728-86880747 None:intergenic 25.0%
! AACAAAAACAGTTTGATCAT+TGG + chr4_1:86881005-86881024 None:intergenic 25.0%
!!! AATGATCAAACTGTTTTTGT+TGG - chr4_1:86881004-86881023 Msa0581490:three_prime_UTR 25.0%
! TTCATCTCGTATTGAAAAAT+GGG - chr4_1:86881081-86881100 Msa0581490:exon 25.0%
!!! GTTTTTGTTGTTATTGTTTG+TGG - chr4_1:86881186-86881205 Msa0581490:intron 25.0%
!!! TTGCTTTTGTTTTCAACAAT+TGG - chr4_1:86881272-86881291 Msa0581490:CDS 25.0%
!! ATGCATTCAATTTGAAGTAT+CGG + chr4_1:86881495-86881514 None:intergenic 25.0%
! AACAAACCTTCAATATGAAA+TGG + chr4_1:86881609-86881628 None:intergenic 25.0%
! TTCATTGATCAAACTTACAT+TGG - chr4_1:86881652-86881671 Msa0581490:intron 25.0%
! TTATTGCATTACTTGGAAAT+TGG - chr4_1:86881966-86881985 Msa0581490:intron 25.0%
!!! TTCTAGTTCTTAAATATGTG+TGG - chr4_1:86882100-86882119 Msa0581490:intron 25.0%
! TTGTTAGTAAATTTGGTTGT+CGG - chr4_1:86882153-86882172 Msa0581490:intron 25.0%
!! ATGTCTTTTGTTAGTTAGTT+TGG - chr4_1:86882182-86882201 Msa0581490:intron 25.0%
!! TTTATCCTAAAAGAGCTTTT+AGG + chr4_1:86882486-86882505 None:intergenic 25.0%
! TCATATAAATGCTCATGTAT+TGG - chr4_1:86882527-86882546 Msa0581490:intron 25.0%
!! TAGCATAATTTAGAGCTAAT+TGG + chr4_1:86882630-86882649 None:intergenic 25.0%
! GAAAAATGCAGTAATTCTTT+AGG - chr4_1:86882775-86882794 Msa0581490:intron 25.0%
! TCCATAATTTCGATACATTT+AGG - chr4_1:86882866-86882885 Msa0581490:CDS 25.0%
! CCATAATTTCGATACATTTA+GGG - chr4_1:86882867-86882886 Msa0581490:CDS 25.0%
!!! TTTTGGTTCATAAATATGTG+AGG + chr4_1:86882902-86882921 None:intergenic 25.0%
! AAAAAAATTGCCCTTAGTAA+GGG - chr4_1:86883198-86883217 Msa0581490:intron 25.0%
! ACTAATACAAAACCATAGTT+AGG + chr4_1:86883348-86883367 None:intergenic 25.0%
AGAGATTGAAGTGATGAATT+TGG + chr4_1:86880846-86880865 None:intergenic 30.0%
TGATTAATGGAGAATTGTTG+TGG + chr4_1:86880869-86880888 None:intergenic 30.0%
GAATTTAGGTGGTTGATTAA+TGG + chr4_1:86880882-86880901 None:intergenic 30.0%
CTTCATCTCGTATTGAAAAA+TGG - chr4_1:86881080-86881099 Msa0581490:exon 30.0%
TCATCTCGTATTGAAAAATG+GGG - chr4_1:86881082-86881101 Msa0581490:exon 30.0%
TGTTATTGTTTGTGGTTATG+AGG - chr4_1:86881194-86881213 Msa0581490:intron 30.0%
GTTATTGTTTGTGGTTATGA+GGG - chr4_1:86881195-86881214 Msa0581490:intron 30.0%
ACAATTGGAAGATATAGTCA+TGG - chr4_1:86881287-86881306 Msa0581490:CDS 30.0%
! ACCGACATTTTACAGTTAAA+TGG - chr4_1:86881555-86881574 Msa0581490:intron 30.0%
CCCATTTAACTGTAAAATGT+CGG + chr4_1:86881559-86881578 None:intergenic 30.0%
! CCGACATTTTACAGTTAAAT+GGG - chr4_1:86881556-86881575 Msa0581490:intron 30.0%
AAACCTTCAATATGAAATGG+TGG + chr4_1:86881606-86881625 None:intergenic 30.0%
! GATCAAACTTACATTGGTTA+CGG - chr4_1:86881658-86881677 Msa0581490:intron 30.0%
! ATTTGTTGGATGTGTTTCAA+TGG - chr4_1:86881795-86881814 Msa0581490:intron 30.0%
TTTGTTGGATGTGTTTCAAT+GGG - chr4_1:86881796-86881815 Msa0581490:intron 30.0%
GGAAAAAATTTGTGGAAAGA+TGG + chr4_1:86881998-86882017 None:intergenic 30.0%
AATGCTAGGGAAAAAATTTG+TGG + chr4_1:86882006-86882025 None:intergenic 30.0%
CTCTGAATGTATCGAAATTA+TGG + chr4_1:86882240-86882259 None:intergenic 30.0%
CATAATTTCGATACATTCAG+AGG - chr4_1:86882238-86882257 Msa0581490:intron 30.0%
CAATGCCTCACAAAATAATT+TGG - chr4_1:86882269-86882288 Msa0581490:intron 30.0%
!! ATGGACCAAATTATTTTGTG+AGG + chr4_1:86882277-86882296 None:intergenic 30.0%
! GAAAAACTGCATCGATATTA+TGG + chr4_1:86882296-86882315 None:intergenic 30.0%
GAACACTTGAATCAATAGTT+AGG - chr4_1:86882316-86882335 Msa0581490:intron 30.0%
TAAACATAACCTGACAAAGT+TGG - chr4_1:86882346-86882365 Msa0581490:intron 30.0%
TATCATCAAAGAAGCTTTCA+AGG + chr4_1:86882735-86882754 None:intergenic 30.0%
! TTGAAAGCTTCTTTGATGAT+AGG - chr4_1:86882734-86882753 Msa0581490:intron 30.0%
! TGAAAGCTTCTTTGATGATA+GGG - chr4_1:86882735-86882754 Msa0581490:intron 30.0%
AACTAACAAAAGACACGTTT+AGG + chr4_1:86882807-86882826 None:intergenic 30.0%
! GTGTCTTTTGTTAGTTAGTT+TGG - chr4_1:86882811-86882830 Msa0581490:CDS 30.0%
CCCTAAATGTATCGAAATTA+TGG + chr4_1:86882870-86882889 None:intergenic 30.0%
! AAACGAGTAAACAGTCATTT+TGG + chr4_1:86882919-86882938 None:intergenic 30.0%
TCTAAGCTGTAATTAGCAAA+TGG + chr4_1:86883098-86883117 None:intergenic 30.0%
ACAGCTGCATTTAATTCATA+GGG - chr4_1:86883117-86883136 Msa0581490:intron 30.0%
!! TTTTTCAACTCAACCAAAAG+TGG + chr4_1:86883183-86883202 None:intergenic 30.0%
GAAAAAAATTGCCCTTAGTA+AGG - chr4_1:86883197-86883216 Msa0581490:intron 30.0%
!!! TTTTTAACTTCTTGGCAGAT+AGG - chr4_1:86883288-86883307 Msa0581490:intron 30.0%
TGTACCTCAAAAAGTTCAAA+GGG + chr4_1:86883477-86883496 None:intergenic 30.0%
ATGTACCTCAAAAAGTTCAA+AGG + chr4_1:86883478-86883497 None:intergenic 30.0%
AACGATCGATTAAATGTTCA+AGG - chr4_1:86883645-86883664 Msa0581490:CDS 30.0%
AACTGTAATGTATATGCATC+AGG - chr4_1:86883668-86883687 Msa0581490:CDS 30.0%
GATACAAAGAGATTTAGCTA+TGG + chr4_1:86883704-86883723 None:intergenic 30.0%
TCGTAAAGATAAACGTTAAG+TGG + chr4_1:86883961-86883980 None:intergenic 30.0%
TGAAATGTGACGATATTAGA+AGG - chr4_1:86883990-86884009 Msa0581490:five_prime_UTR 30.0%
TTTGAAAACATGGCTCCAAA+AGG + chr4_1:86880815-86880834 None:intergenic 35.0%
GGTTGAAGAGTTTGAAAACA+TGG + chr4_1:86880825-86880844 None:intergenic 35.0%
TGATCATTGGCAAAAGAAGA+GGG + chr4_1:86880992-86881011 None:intergenic 35.0%
TTGATCATTGGCAAAAGAAG+AGG + chr4_1:86880993-86881012 None:intergenic 35.0%
!!! AACTGTTTTTGTTGGTGACA+AGG - chr4_1:86881012-86881031 Msa0581490:three_prime_UTR 35.0%
AACTGAATAACACCCTCTAA+TGG + chr4_1:86881043-86881062 None:intergenic 35.0%
ATACGAGATGAAGAGTTGTT+TGG + chr4_1:86881073-86881092 None:intergenic 35.0%
CATCTCGTATTGAAAAATGG+GGG - chr4_1:86881083-86881102 Msa0581490:CDS 35.0%
CCAAACATACCAGCTATAAA+AGG + chr4_1:86881353-86881372 None:intergenic 35.0%
! CCTTTTATAGCTGGTATGTT+TGG - chr4_1:86881350-86881369 Msa0581490:CDS 35.0%
GTGAAGAGTTGCAATCAAAT+AGG - chr4_1:86881445-86881464 Msa0581490:intron 35.0%
TGTCGGATATTGATATGTGT+CGG + chr4_1:86881536-86881555 None:intergenic 35.0%
TAACTGTAAAATGTCGGTGT+CGG + chr4_1:86881553-86881572 None:intergenic 35.0%
!!! GACCTGTTTTTAAAACCTTG+TGG - chr4_1:86881723-86881742 Msa0581490:intron 35.0%
!!! AGCCACAAGGTTTTAAAAAC+AGG + chr4_1:86881728-86881747 None:intergenic 35.0%
ACAAAAATGTTCAAGCCACA+AGG + chr4_1:86881741-86881760 None:intergenic 35.0%
!!! TTTTTAGGTGCTTACTTCCT+TGG - chr4_1:86881830-86881849 Msa0581490:intron 35.0%
!! TTGGAGGTTTTAGTGAAGAT+GGG - chr4_1:86881849-86881868 Msa0581490:intron 35.0%
TCATTGCTACTGCAAAATCA+TGG - chr4_1:86881900-86881919 Msa0581490:intron 35.0%
CATTGCTACTGCAAAATCAT+GGG - chr4_1:86881901-86881920 Msa0581490:intron 35.0%
AAGAAGCCATTCAACTTACA+GGG + chr4_1:86881937-86881956 None:intergenic 35.0%
TAAGAAGCCATTCAACTTAC+AGG + chr4_1:86881938-86881957 None:intergenic 35.0%
GTGAAGCTTATTGCATTACT+TGG - chr4_1:86881959-86881978 Msa0581490:intron 35.0%
AAGATAGTTAGTCGTGTCAT+GGG + chr4_1:86882382-86882401 None:intergenic 35.0%
AAAGATAGTTAGTCGTGTCA+TGG + chr4_1:86882383-86882402 None:intergenic 35.0%
GACAGCTGCATTTAATTCAT+AGG - chr4_1:86883116-86883135 Msa0581490:intron 35.0%
!!! TTGAACTTTGAGACCACTTT+TGG - chr4_1:86883167-86883186 Msa0581490:intron 35.0%
AAACATGTCACCCTTACTAA+GGG + chr4_1:86883211-86883230 None:intergenic 35.0%
AAAACATGTCACCCTTACTA+AGG + chr4_1:86883212-86883231 None:intergenic 35.0%
GCAGATAGGAATTGCAATAA+GGG - chr4_1:86883302-86883321 Msa0581490:intron 35.0%
CAAAACCATAGTTAGGCAAA+TGG + chr4_1:86883341-86883360 None:intergenic 35.0%
!! GGTTTTGTATTAGTGAGTCT+TGG - chr4_1:86883354-86883373 Msa0581490:intron 35.0%
ACTATTGTCAACTGGAAGAA+CGG + chr4_1:86883424-86883443 None:intergenic 35.0%
CTCTTCTTACTATTGTCAAC+TGG + chr4_1:86883432-86883451 None:intergenic 35.0%
! AAGTCCCTTTGAACTTTTTG+AGG - chr4_1:86883470-86883489 Msa0581490:CDS 35.0%
AGCTTCTCACATCATTAGTA+CGG - chr4_1:86883615-86883634 Msa0581490:intron 35.0%
TAGCAGATCATAGTGCAAAT+GGG + chr4_1:86883858-86883877 None:intergenic 35.0%
! TCAGATCACATGATGATGAA+AGG - chr4_1:86883901-86883920 Msa0581490:CDS 35.0%
! AGCCATATCCAATCTCCTTT+TGG - chr4_1:86880797-86880816 Msa0581490:three_prime_UTR 40.0%
CTCCAAAAGGAGATTGGATA+TGG + chr4_1:86880802-86880821 None:intergenic 40.0%
! CTTCTGGTGTTGAATTTAGG+TGG + chr4_1:86880893-86880912 None:intergenic 40.0%
! GTGCTTCTGGTGTTGAATTT+AGG + chr4_1:86880896-86880915 None:intergenic 40.0%
AAGATGCAAGGGTCTAATGA+AGG + chr4_1:86880918-86880937 None:intergenic 40.0%
TTGGCTAGTGTAAGATGCAA+GGG + chr4_1:86880929-86880948 None:intergenic 40.0%
TTTGGCTAGTGTAAGATGCA+AGG + chr4_1:86880930-86880949 None:intergenic 40.0%
GTCTATGTTTCCTTCAGCTT+TGG + chr4_1:86880948-86880967 None:intergenic 40.0%
!! GCAAAAGAAGAGGGTTTTGT+AGG + chr4_1:86880983-86881002 None:intergenic 40.0%
TGACAAGGATGTTCCATTAG+AGG - chr4_1:86881027-86881046 Msa0581490:three_prime_UTR 40.0%
GACAAGGATGTTCCATTAGA+GGG - chr4_1:86881028-86881047 Msa0581490:three_prime_UTR 40.0%
!!! GAGGGTTGTTGTTTTGTTGT+AGG - chr4_1:86881213-86881232 Msa0581490:intron 40.0%
! ACTGCTGATCCTTTTATAGC+TGG - chr4_1:86881341-86881360 Msa0581490:CDS 40.0%
GAATGCATGTCTAGCATGTT+TGG - chr4_1:86881507-86881526 Msa0581490:intron 40.0%
GCACCACCATTTCATATTGA+AGG - chr4_1:86881600-86881619 Msa0581490:intron 40.0%
CATCTTCACTAAAACCTCCA+AGG + chr4_1:86881850-86881869 None:intergenic 40.0%
!! CTTGGAGGTTTTAGTGAAGA+TGG - chr4_1:86881848-86881867 Msa0581490:intron 40.0%
ACACAGCTACACTAATGCTA+GGG + chr4_1:86882019-86882038 None:intergenic 40.0%
AACACAGCTACACTAATGCT+AGG + chr4_1:86882020-86882039 None:intergenic 40.0%
AGATAGTTAGTCGTGTCATG+GGG + chr4_1:86882381-86882400 None:intergenic 40.0%
!!! AACAGCATGCTGATTTTTGC+AGG - chr4_1:86882460-86882479 Msa0581490:intron 40.0%
TTTCTCTCGCTTCAATTGTG+TGG + chr4_1:86882695-86882714 None:intergenic 40.0%
! CATAAATATGTGAGGCGTTC+AGG + chr4_1:86882894-86882913 None:intergenic 40.0%
! TCAGTTTTCAGCAAGATCAC+TGG + chr4_1:86883247-86883266 None:intergenic 40.0%
GGCAGATAGGAATTGCAATA+AGG - chr4_1:86883301-86883320 Msa0581490:intron 40.0%
TTCTCACATCATTAGTACGG+CGG - chr4_1:86883618-86883637 Msa0581490:intron 40.0%
CTAGCAGATCATAGTGCAAA+TGG + chr4_1:86883859-86883878 None:intergenic 40.0%
CATTTGCACTATGATCTGCT+AGG - chr4_1:86883857-86883876 Msa0581490:CDS 40.0%
! GATCACATGATGATGAAAGG+AGG - chr4_1:86883904-86883923 Msa0581490:CDS 40.0%
ACATGGCTCCAAAAGGAGAT+TGG + chr4_1:86880808-86880827 None:intergenic 45.0%
CTTACACTAGCCAAAGCTGA+AGG - chr4_1:86880935-86880954 Msa0581490:three_prime_UTR 45.0%
GTTTGTATGCACGTCTGTGT+TGG - chr4_1:86881626-86881645 Msa0581490:intron 45.0%
CAGGTCTGCAACATCAATCT+CGG + chr4_1:86881709-86881728 None:intergenic 45.0%
GTTGGATGTGTTTCAATGGG+TGG - chr4_1:86881799-86881818 Msa0581490:intron 45.0%
ATGTGTTTCAATGGGTGGCA+GGG - chr4_1:86881804-86881823 Msa0581490:intron 45.0%
TTAGGTGCTTACTTCCTTGG+AGG - chr4_1:86881833-86881852 Msa0581490:intron 45.0%
GGAATGAATGGTCTACCCAA+AGG - chr4_1:86881875-86881894 Msa0581490:intron 45.0%
! ACTGCAAAATCATGGGCTGT+AGG - chr4_1:86881908-86881927 Msa0581490:intron 45.0%
! CTGCAAAATCATGGGCTGTA+GGG - chr4_1:86881909-86881928 Msa0581490:intron 45.0%
! AGGGATCCCTGTAAGTTGAA+TGG - chr4_1:86881928-86881947 Msa0581490:intron 45.0%
CCTTTGTTGCCAACTTTGTC+AGG + chr4_1:86882358-86882377 None:intergenic 45.0%
CCTGACAAAGTTGGCAACAA+AGG - chr4_1:86882355-86882374 Msa0581490:intron 45.0%
! GCAGGCCTAAAAGCTCTTTT+AGG - chr4_1:86882478-86882497 Msa0581490:intron 45.0%
! TTGATGATAGGGTCTTGTGC+AGG - chr4_1:86882746-86882765 Msa0581490:intron 45.0%
GCAATAAGGGCAGCAAAATC+AGG - chr4_1:86883315-86883334 Msa0581490:intron 45.0%
TCAGGCCATTTGCCTAACTA+TGG - chr4_1:86883333-86883352 Msa0581490:intron 45.0%
AAAGTTCAAAGGGACTTCCG+CGG + chr4_1:86883467-86883486 None:intergenic 45.0%
!! GGGTCTAATGAAGGTGCTTC+TGG + chr4_1:86880909-86880928 None:intergenic 50.0%
! GTTTGCTGGTGGTGATGTGT+TGG - chr4_1:86881247-86881266 Msa0581490:CDS 50.0%
! AAATGGGCTCATGCAGCCTT+AGG - chr4_1:86881572-86881591 Msa0581490:intron 50.0%
! AATGGGCTCATGCAGCCTTA+GGG - chr4_1:86881573-86881592 Msa0581490:intron 50.0%
!! AATGGTGGTGCTACACCCTA+AGG + chr4_1:86881591-86881610 None:intergenic 50.0%
GATGTGTTTCAATGGGTGGC+AGG - chr4_1:86881803-86881822 Msa0581490:intron 50.0%
!! GGTTTTAGTGAAGATGGGCG+TGG - chr4_1:86881854-86881873 Msa0581490:intron 50.0%
GAAGATGGGCGTGGAATGAA+TGG - chr4_1:86881863-86881882 Msa0581490:intron 50.0%
GCAGTAGCAATGACGCCTTT+GGG + chr4_1:86881893-86881912 None:intergenic 50.0%
TGCAGTAGCAATGACGCCTT+TGG + chr4_1:86881894-86881913 None:intergenic 50.0%
AAGAGTGATGTCTATCGCCG+CGG - chr4_1:86883447-86883466 Msa0581490:CDS 50.0%
TCACATCATTAGTACGGCGG+TGG - chr4_1:86883621-86883640 Msa0581490:intron 50.0%
! AGGCGTGTAGCTCTGTTTGC+TGG - chr4_1:86881233-86881252 Msa0581490:intron 55.0%
! CGTGTAGCTCTGTTTGCTGG+TGG - chr4_1:86881236-86881255 Msa0581490:intron 55.0%
TGTTTCAATGGGTGGCAGGG+TGG - chr4_1:86881807-86881826 Msa0581490:intron 55.0%
! TGGGTGGCAGGGTGGTTTTT+AGG - chr4_1:86881815-86881834 Msa0581490:intron 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 86880695 86884034 86880695 ID=Msa0581490;Name=Msa0581490
chr4_1 mRNA 86880695 86884034 86880695 ID=Msa0581490-mRNA-1;Parent=Msa0581490;Name=Msa0581490-mRNA-1;_AED=0.02;_eAED=0.02;_QI=90|1|1|1|0.75|0.8|5|388|258
chr4_1 exon 86880695 86881112 86880695 ID=Msa0581490-mRNA-1:exon:32235;Parent=Msa0581490-mRNA-1
chr4_1 exon 86881238 86881423 86881238 ID=Msa0581490-mRNA-1:exon:32234;Parent=Msa0581490-mRNA-1
chr4_1 exon 86882792 86882904 86882792 ID=Msa0581490-mRNA-1:exon:32233;Parent=Msa0581490-mRNA-1
chr4_1 exon 86883367 86883494 86883367 ID=Msa0581490-mRNA-1:exon:32232;Parent=Msa0581490-mRNA-1
chr4_1 exon 86883625 86884034 86883625 ID=Msa0581490-mRNA-1:exon:32231;Parent=Msa0581490-mRNA-1
chr4_1 five_prime_UTR 86883945 86884034 86883945 ID=Msa0581490-mRNA-1:five_prime_utr;Parent=Msa0581490-mRNA-1
chr4_1 CDS 86883625 86883944 86883625 ID=Msa0581490-mRNA-1:cds;Parent=Msa0581490-mRNA-1
chr4_1 CDS 86883367 86883494 86883367 ID=Msa0581490-mRNA-1:cds;Parent=Msa0581490-mRNA-1
chr4_1 CDS 86882792 86882904 86882792 ID=Msa0581490-mRNA-1:cds;Parent=Msa0581490-mRNA-1
chr4_1 CDS 86881238 86881423 86881238 ID=Msa0581490-mRNA-1:cds;Parent=Msa0581490-mRNA-1
chr4_1 CDS 86881083 86881112 86881083 ID=Msa0581490-mRNA-1:cds;Parent=Msa0581490-mRNA-1
chr4_1 three_prime_UTR 86880695 86881082 86880695 ID=Msa0581490-mRNA-1:three_prime_utr;Parent=Msa0581490-mRNA-1
Gene Sequence

>Msa0581490

ATGATACTTGTTAGCCATATCCAATCTCCTTTTGGAGCCATGTTTTCAAACTCTTCAACCAAATTCATCACTTCAATCTCTCCACAACAATTCTCCATTAATCAACCACCTAAATTCAACACCAGAAGCACCTTCATTAGACCCTTGCATCTTACACTAGCCAAAGCTGAAGGAAACATAGACTCATCATCTTCACCTACAAAACCCTCTTCTTTTGCCAATGATCAAACTGTTTTTGTTGGTGACAAGGATGTTCCATTAGAGGGTGTTATTCAGTTTGACAAACCAAACAACTCTTCATCTCGTATTGAAAAATGGGGGCGTGTAGCTCTGTTTGCTGGTGGTGATGTGTTGGCTTTGCTTTTGTTTTCAACAATTGGAAGATATAGTCATGGACTGTCTGTTTTTGACTTTGAGACTCTGCACACTGCTGATCCTTTTATAGCTGGGTGGTTTTTAGGTGCTTACTTCCTTGGAGGTTTTAGTGAAGATGGGCGTGGAATGAATGGTCTACCCAAAGGCGTCATTGCTACTGCAAAATCATGGGCTGTAGGGATCCCTATAGGAATTGCAATAAGGGCAGCAAAATCAGGCCATTTGCCTAACTATGGTTTTGTATTAGTGAGTCTTGGAAGCACTGCTGTTTTACTAATCGCAGTCAGAGCTTTATTATACGCCGTTCTTCCAGTTGACAATAGTAAGAAGAGTGATGTCTATCGCCGCGGAAGTCCCTTTGAACTTTTTGAGCTTCTCACATCATTAGTACGGCGGTGGTAA

Protein sequence

>Msa0581490

MILVSHIQSPFGAMFSNSSTKFITSISPQQFSINQPPKFNTRSTFIRPLHLTLAKAEGNIDSSSSPTKPSSFANDQTVFVGDKDVPLEGVIQFDKPNNSSSRIEKWGRVALFAGGDVLALLLFSTIGRYSHGLSVFDFETLHTADPFIAGWFLGAYFLGGFSEDGRGMNGLPKGVIATAKSWAVGIPIGIAIRAAKSGHLPNYGFVLVSLGSTAVLLIAVRALLYAVLPVDNSKKSDVYRRGSPFELFELLTSLVRRW*