AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0396330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0396330 MtrunA17_Chr3g0082841 84.956 226 16 2 14 222 3 227 1.47e-138 388
Msa0396330 MtrunA17_Chr5g0398901 41.053 95 51 2 120 214 13 102 1.49e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0396330 AT3G17670.2 50.971 206 75 2 44 223 16 221 6.92e-66 204
Msa0396330 AT3G17670.1 50.732 205 75 2 44 222 16 220 1.34e-65 203
Msa0396330 AT1G62740.1 46.154 78 40 1 137 214 27 102 1.45e-11 63.9
Msa0396330 AT1G12270.1 40.594 101 55 2 120 220 13 108 6.61e-11 62.0

Find 96 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGCACACCCGTATTTCTT+TGG 0.222264 3_2:+14202589 None:intergenic
TTGTTTCAATTGTTATATAC+TGG 0.306100 3_2:-14200161 Msa0396330:three_prime_UTR
CGGGACGGCTGCTCGTTGTT+TGG 0.315956 3_2:-14202408 Msa0396330:CDS
CGATATTCAGGTCATCAATA+AGG 0.317914 3_2:-14201918 Msa0396330:intron
GTCATCAATAAGGCTGGAAT+TGG 0.327574 3_2:-14201908 Msa0396330:CDS
GCTATAGATTTAAAACCATT+TGG 0.341600 3_2:-14202043 Msa0396330:CDS
GTGCACACCCGTATTTCTTT+GGG 0.344936 3_2:+14202590 None:intergenic
GGCATTGAACAAATTCGATT+TGG 0.354216 3_2:-14200701 Msa0396330:CDS
CTGCTGCTGTTGATGTGCTT+TGG 0.354720 3_2:+14202613 None:intergenic
CTGTCAAGGTGATGCCCATT+TGG 0.356146 3_2:-14200722 Msa0396330:CDS
GGAAGGAAGCCAGCTTCGTT+TGG 0.359250 3_2:+14202643 None:intergenic
TGTAAAGTCGTCCGGTTGCT+TGG 0.362043 3_2:-14202492 Msa0396330:CDS
CTGCTGTTGATGTGCTTTGG+TGG 0.371178 3_2:+14202616 None:intergenic
GCCAGCTTCGTTTGGGTGAT+GGG 0.381967 3_2:+14202651 None:intergenic
CTCTTGAGATTTAAATGTTT+AGG 0.384268 3_2:-14200349 Msa0396330:three_prime_UTR
CGAATTTGTTCAATGCCAAA+TGG 0.393150 3_2:+14200707 None:intergenic
TTGGGTCACCTCTGAATACT+TGG 0.395476 3_2:+14201834 None:intergenic
ACCTCATCATCCGCTATTGC+GGG 0.397200 3_2:-14202427 Msa0396330:CDS
GAGACCATGGTAAGTCTGTT+TGG 0.410408 3_2:-14202386 Msa0396330:CDS
CAAATTCGATTTGGCAGAGC+AGG 0.423742 3_2:-14200692 Msa0396330:CDS
GACGACTTTACAGAGACGTT+TGG 0.431405 3_2:+14202503 None:intergenic
TGCTCTTGCTTTGAGGAAGA+AGG 0.433872 3_2:-14202342 Msa0396330:CDS
GAAGGAAGCCAGCTTCGTTT+GGG 0.442028 3_2:+14202644 None:intergenic
AATTGGCGTGGATGCGGTTA+CGG 0.442355 3_2:+14202715 None:intergenic
GAGAGTTTCTAGAGTTTGAA+AGG 0.447053 3_2:+14202541 None:intergenic
TTGATGTGCTTTGGTGGTGC+AGG 0.447422 3_2:+14202622 None:intergenic
TGCTTGGGTAAGTGCGGTGC+TGG 0.449594 3_2:-14202476 Msa0396330:CDS
AGCAGCAGCCCAAAGAAATA+CGG 0.449885 3_2:-14202598 Msa0396330:CDS
TAGCGGATGATGAGGTAATC+AGG 0.450567 3_2:+14202434 None:intergenic
AAGAGACTGTGGGATTGAAT+TGG 0.451131 3_2:+14202698 None:intergenic
GTAAAGTCGTCCGGTTGCTT+GGG 0.451387 3_2:-14202491 Msa0396330:CDS
AGCCAGCTTCGTTTGGGTGA+TGG 0.452814 3_2:+14202650 None:intergenic
GTTTGGATGCTCTTGCTTTG+AGG 0.453371 3_2:-14202349 Msa0396330:CDS
GCTGGAATTGGGAAACTACT+TGG 0.454976 3_2:-14201896 Msa0396330:CDS
ACCGCACTTACCCAAGCAAC+CGG 0.465811 3_2:+14202481 None:intergenic
CTCTTTGTAAGCTGTCATGT+GGG 0.472330 3_2:-14202680 Msa0396330:CDS
TCAGGAAGGACCACCAGGTT+GGG 0.478230 3_2:+14202452 None:intergenic
CCGTCAGTCTAAATCATTCA+AGG 0.480103 3_2:-14200635 Msa0396330:CDS
AAAGGATCCTTGTTTGCGGC+AGG 0.482679 3_2:+14202559 None:intergenic
TTGTTTGCGGCAGGCACGGT+TGG 0.493358 3_2:+14202568 None:intergenic
TGGTGGAGGAGATAATTGTT+TGG 0.497096 3_2:-14202366 Msa0396330:CDS
ATCCTTGTTTGCGGCAGGCA+CGG 0.497473 3_2:+14202564 None:intergenic
GACTTTACAGAGACGTTTGG+AGG 0.498021 3_2:+14202506 None:intergenic
GAATTTGTTCAATGCCAAAT+GGG 0.511521 3_2:+14200708 None:intergenic
AACGTCTCTGTAAAGTCGTC+CGG 0.511697 3_2:-14202500 Msa0396330:CDS
CCCCATCACCCAAACGAAGC+TGG 0.513382 3_2:-14202652 Msa0396330:CDS
GGTAATCAGGAAGGACCACC+AGG 0.515194 3_2:+14202447 None:intergenic
ATTCAGGTCATCAATAAGGC+TGG 0.517640 3_2:-14201914 Msa0396330:intron
TCATCAATAAGGCTGGAATT+GGG 0.524159 3_2:-14201907 Msa0396330:CDS
TACCTCATCATCCGCTATTG+CGG 0.534019 3_2:-14202428 Msa0396330:CDS
AACCGTGCCTGCCGCAAACA+AGG 0.534436 3_2:-14202566 Msa0396330:CDS
TACATGTCACATTTAAATGC+AGG 0.537041 3_2:-14202015 Msa0396330:intron
CAAACTCTAGAAACTCTCTC+TGG 0.537664 3_2:-14202536 Msa0396330:CDS
GTGCGGTGCTGGTCCCAACC+TGG 0.538727 3_2:-14202465 Msa0396330:CDS
TGGCGTGGATGCGGTTACGG+TGG 0.540320 3_2:+14202718 None:intergenic
GTGACATGTATACCTCCAAA+TGG 0.541166 3_2:+14202028 None:intergenic
AAGCCTCCTTAGCATCTTCG+AGG 0.542993 3_2:+14201869 None:intergenic
ATAGATTTAAAACCATTTGG+AGG 0.543444 3_2:-14202040 Msa0396330:CDS
TTTGAAAGGATCCTTGTTTG+CGG 0.546105 3_2:+14202555 None:intergenic
CCAGCTTCGTTTGGGTGATG+GGG 0.555845 3_2:+14202652 None:intergenic
TGCTCGTTGTTTGGAGACCA+TGG 0.558612 3_2:-14202399 Msa0396330:CDS
GGCGTGGATGCGGTTACGGT+GGG 0.560111 3_2:+14202719 None:intergenic
GGGTGCCCTCGAAGATGCTA+AGG 0.560777 3_2:-14201875 Msa0396330:CDS
ATGTTTAGGTTATTTGATCG+AGG 0.567652 3_2:-14200335 Msa0396330:three_prime_UTR
TTGCAGGCTTATATCTGTCA+AGG 0.572022 3_2:-14200736 Msa0396330:intron
ATCAGGAAGGACCACCAGGT+TGG 0.575050 3_2:+14202451 None:intergenic
GGATTGAATTGGCGTGGATG+CGG 0.576414 3_2:+14202709 None:intergenic
GCAGCAGCCCAAAGAAATAC+GGG 0.579170 3_2:-14202597 Msa0396330:CDS
GAGCAGCCGTCCCGCAATAG+CGG 0.581813 3_2:+14202417 None:intergenic
TGGGTCACCTCTGAATACTT+GGG 0.585710 3_2:+14201835 None:intergenic
CTGGAATTGGGAAACTACTT+GGG 0.586591 3_2:-14201895 Msa0396330:CDS
ATGGTAAGTCTGTTTGGTGG+AGG 0.589868 3_2:-14202380 Msa0396330:CDS
GATTTAGACTGACGGATCGA+AGG 0.592838 3_2:+14200643 None:intergenic
ACCATGGTAAGTCTGTTTGG+TGG 0.604006 3_2:-14202383 Msa0396330:CDS
TCTCTTTGTAAGCTGTCATG+TGG 0.607011 3_2:-14202681 Msa0396330:CDS
GACAGCTTACAAAGAGACTG+TGG 0.611286 3_2:+14202687 None:intergenic
TCCCGCAATAGCGGATGATG+AGG 0.621652 3_2:+14202426 None:intergenic
AGTTGCAACTGATCAATGAG+AGG 0.622557 3_2:+14200248 None:intergenic
CCTTGAATGATTTAGACTGA+CGG 0.623941 3_2:+14200635 None:intergenic
TGCCCTCGAAGATGCTAAGG+AGG 0.624073 3_2:-14201872 Msa0396330:CDS
TCCGGTTGCTTGGGTAAGTG+CGG 0.626454 3_2:-14202482 Msa0396330:CDS
AGTGAGGCAAAGCAAGAGAG+AGG 0.633403 3_2:+14200289 None:intergenic
GAAATATGACAGCATGAGTG+AGG 0.639678 3_2:+14200273 None:intergenic
GGATGATGAGGTAATCAGGA+AGG 0.643225 3_2:+14202438 None:intergenic
GTTGCAACTGATCAATGAGA+GGG 0.645688 3_2:+14200249 None:intergenic
TTGTCAATATAGCTGTGTAG+TGG 0.646021 3_2:-14200439 Msa0396330:three_prime_UTR
TCCACCAAACAGACTTACCA+TGG 0.651181 3_2:+14202382 None:intergenic
AGTGGTACAGTTTAGTGTAG+CGG 0.652101 3_2:-14200421 Msa0396330:three_prime_UTR
ATTAGCTCCCAAGTATTCAG+AGG 0.657616 3_2:-14201842 Msa0396330:intron
AGCCTCCTTAGCATCTTCGA+GGG 0.657655 3_2:+14201870 None:intergenic
CATCATCCGCTATTGCGGGA+CGG 0.668576 3_2:-14202423 Msa0396330:CDS
ACAGCTTACAAAGAGACTGT+GGG 0.668910 3_2:+14202688 None:intergenic
TCTTTGTAAGCTGTCATGTG+GGG 0.668932 3_2:-14202679 Msa0396330:CDS
TGTGCTTTGGTGGTGCAGGA+AGG 0.673056 3_2:+14202626 None:intergenic
ACTGTGGGATTGAATTGGCG+TGG 0.696617 3_2:+14202703 None:intergenic
CGGTGCTGGTCCCAACCTGG+TGG 0.700612 3_2:-14202462 Msa0396330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACATATAATAATTTTGATT+CGG + chr3_2:14200907-14200926 None:intergenic 10.0%
!! CAAAATTATTATATGTATAT+TGG - chr3_2:14200910-14200929 Msa0396330:intron 10.0%
!!! ACATATAATAATTTTGATTC+GGG + chr3_2:14200906-14200925 None:intergenic 15.0%
!! AGAAAAGAATATGAAAATTT+GGG + chr3_2:14201073-14201092 None:intergenic 15.0%
!! TAGAAAAGAATATGAAAATT+TGG + chr3_2:14201074-14201093 None:intergenic 15.0%
!! ATTTGTAATAACAAGTTAAA+TGG - chr3_2:14201317-14201336 Msa0396330:intron 15.0%
!!! ATTTTTTTTTTATCCTTTTG+AGG - chr3_2:14201389-14201408 Msa0396330:intron 15.0%
!! TCAAATACTTTATACTTATA+TGG + chr3_2:14201424-14201443 None:intergenic 15.0%
!! AATATCGAAATAAGAACAAT+TGG + chr3_2:14200955-14200974 None:intergenic 20.0%
!! GATAATAGGATATTAATCTA+TGG + chr3_2:14201105-14201124 None:intergenic 20.0%
!! TACTTTATACTTATATGGAA+AGG + chr3_2:14201419-14201438 None:intergenic 20.0%
!!! ATAAGAATTGATTTAGCATT+CGG + chr3_2:14201497-14201516 None:intergenic 20.0%
!! GCTATAGATTTAAAACCATT+TGG - chr3_2:14200843-14200862 Msa0396330:intron 25.0%
!! ATAGATTTAAAACCATTTGG+AGG - chr3_2:14200846-14200865 Msa0396330:intron 25.0%
!! TTGTTCTTATTTCGATATTC+AGG - chr3_2:14200956-14200975 Msa0396330:intron 25.0%
!!! TAGATTTTAGCAAGGATAAT+AGG + chr3_2:14201119-14201138 None:intergenic 25.0%
!! TTGTAATTGATAAAGTGTCA+GGG + chr3_2:14201281-14201300 None:intergenic 25.0%
!! TTTGTAATTGATAAAGTGTC+AGG + chr3_2:14201282-14201301 None:intergenic 25.0%
!! TTCAAAACACTTGTTACATT+GGG + chr3_2:14201352-14201371 None:intergenic 25.0%
!! TTTCAAAACACTTGTTACAT+TGG + chr3_2:14201353-14201372 None:intergenic 25.0%
!! AGTATAAAGTATTTGAAGCA+TGG - chr3_2:14201428-14201447 Msa0396330:intron 25.0%
! ACAAAATTATAAGCCGATAT+TGG - chr3_2:14201579-14201598 Msa0396330:intron 25.0%
!!! TTGAATCTTGAGTTATTTTG+AGG + chr3_2:14201612-14201631 None:intergenic 25.0%
! TGCTTGGAATTAATAATGAT+TGG - chr3_2:14201785-14201804 Msa0396330:intron 25.0%
! GCTTGGAATTAATAATGATT+GGG - chr3_2:14201786-14201805 Msa0396330:intron 25.0%
! ATTGATGTTTGTTTAAACGT+AGG + chr3_2:14202066-14202085 None:intergenic 25.0%
! TATTTCTTTATTCACTTTGC+AGG - chr3_2:14202134-14202153 Msa0396330:intron 25.0%
! CATAGATCTCAAAAATCTAT+GGG + chr3_2:14202376-14202395 None:intergenic 25.0%
! ACATAGATCTCAAAAATCTA+TGG + chr3_2:14202377-14202396 None:intergenic 25.0%
!! TTAAATCTCAAGAGCTTTTT+GGG + chr3_2:14202531-14202550 None:intergenic 25.0%
!! TTTAAATCTCAAGAGCTTTT+TGG + chr3_2:14202532-14202551 None:intergenic 25.0%
! CTCTTGAGATTTAAATGTTT+AGG - chr3_2:14202537-14202556 Msa0396330:CDS 25.0%
!!! TTATTTGATCGAGGTATTTT+AGG - chr3_2:14202560-14202579 Msa0396330:CDS 25.0%
TCTCAAATTATTAGCTGTGT+CGG - chr3_2:14200683-14200702 Msa0396330:CDS 30.0%
TACATGTCACATTTAAATGC+AGG - chr3_2:14200871-14200890 Msa0396330:intron 30.0%
!! GTTACTAGTAGATTTTAGCA+AGG + chr3_2:14201127-14201146 None:intergenic 30.0%
AATGACTAGAGTTTGAATCA+CGG + chr3_2:14201204-14201223 None:intergenic 30.0%
TGATTTAGCATTCGGAAAAT+AGG + chr3_2:14201489-14201508 None:intergenic 30.0%
TTGAGGTTTGTATCCAATAT+CGG + chr3_2:14201595-14201614 None:intergenic 30.0%
TACAAAGTTGACAAAAAGAG+TGG - chr3_2:14201669-14201688 Msa0396330:intron 30.0%
ACAAAGTTGACAAAAAGAGT+GGG - chr3_2:14201670-14201689 Msa0396330:intron 30.0%
CAAAATATGAGAAACAAGCA+TGG + chr3_2:14201894-14201913 None:intergenic 30.0%
!! CATGCTTGTTTCTCATATTT+TGG - chr3_2:14201892-14201911 Msa0396330:CDS 30.0%
! AATGTCACAACAAGAGATTT+TGG - chr3_2:14201964-14201983 Msa0396330:intron 30.0%
! GAATTTGTTCAATGCCAAAT+GGG + chr3_2:14202181-14202200 None:intergenic 30.0%
! ATGTTTAGGTTATTTGATCG+AGG - chr3_2:14202551-14202570 Msa0396330:CDS 30.0%
! TTTGAAAGGATCCTTGTTTG+CGG + chr3_2:14200334-14200353 None:intergenic 35.0%
!! GAGAGTTTCTAGAGTTTGAA+AGG + chr3_2:14200348-14200367 None:intergenic 35.0%
AGAGAAGAAAAATTTCGCTG+AGG - chr3_2:14200580-14200599 Msa0396330:three_prime_UTR 35.0%
AATTATACGTGTGTTAGTGC+AGG + chr3_2:14200644-14200663 None:intergenic 35.0%
TTGTTACGATCTATGAAGCA+TGG + chr3_2:14200748-14200767 None:intergenic 35.0%
! ATGTTAGTTGAAAGCATAGC+TGG + chr3_2:14200799-14200818 None:intergenic 35.0%
TTGATTGATTGATGCATTGC+AGG - chr3_2:14200821-14200840 Msa0396330:intron 35.0%
GTCACATTTAAATGCAGGTA+TGG - chr3_2:14200876-14200895 Msa0396330:intron 35.0%
CGATATTCAGGTCATCAATA+AGG - chr3_2:14200968-14200987 Msa0396330:intron 35.0%
TCATCAATAAGGCTGGAATT+GGG - chr3_2:14200979-14200998 Msa0396330:intron 35.0%
CGAGCTTAGCTAAATTGTTA+AGG + chr3_2:14201245-14201264 None:intergenic 35.0%
TCCAATCACGATTTGAATCT+CGG + chr3_2:14201462-14201481 None:intergenic 35.0%
! TTCCAAGCATGCATCTATTT+TGG + chr3_2:14201774-14201793 None:intergenic 35.0%
AACATACGATCCACATGTAT+CGG - chr3_2:14201828-14201847 Msa0396330:intron 35.0%
TTAGTATCTTCCGATACATG+TGG + chr3_2:14201841-14201860 None:intergenic 35.0%
TTGAGTTAGCATTCAGAACA+TGG + chr3_2:14201867-14201886 None:intergenic 35.0%
ATATGAGAAACAAGCATGGT+AGG + chr3_2:14201890-14201909 None:intergenic 35.0%
AATGATCATAGCCACATTGA+TGG + chr3_2:14202023-14202042 None:intergenic 35.0%
! CGAATTTGTTCAATGCCAAA+TGG + chr3_2:14202182-14202201 None:intergenic 35.0%
! GGCATTGAACAAATTCGATT+TGG - chr3_2:14202185-14202204 Msa0396330:intron 35.0%
CCTTGAATGATTTAGACTGA+CGG + chr3_2:14202254-14202273 None:intergenic 35.0%
!!! CATTACCTGCATTTTTTCGA+AGG - chr3_2:14202324-14202343 Msa0396330:intron 35.0%
ATCTTCCTTCGAAAAAATGC+AGG + chr3_2:14202332-14202351 None:intergenic 35.0%
!!! CATTTTTTCGAAGGAAGATG+CGG - chr3_2:14202333-14202352 Msa0396330:intron 35.0%
TTGTCAATATAGCTGTGTAG+TGG - chr3_2:14202447-14202466 Msa0396330:CDS 35.0%
AAGAGACTGTGGGATTGAAT+TGG + chr3_2:14200191-14200210 None:intergenic 40.0%
ACAGCTTACAAAGAGACTGT+GGG + chr3_2:14200201-14200220 None:intergenic 40.0%
TCTCTTTGTAAGCTGTCATG+TGG - chr3_2:14200205-14200224 Msa0396330:three_prime_UTR 40.0%
CTCTTTGTAAGCTGTCATGT+GGG - chr3_2:14200206-14200225 Msa0396330:three_prime_UTR 40.0%
TCTTTGTAAGCTGTCATGTG+GGG - chr3_2:14200207-14200226 Msa0396330:three_prime_UTR 40.0%
! CAAACTCTAGAAACTCTCTC+TGG - chr3_2:14200350-14200369 Msa0396330:three_prime_UTR 40.0%
TGGTGGAGGAGATAATTGTT+TGG - chr3_2:14200520-14200539 Msa0396330:three_prime_UTR 40.0%
! GTAAATGTCCGTGTCTTGTT+AGG - chr3_2:14200709-14200728 Msa0396330:CDS 40.0%
CGATCTATGAAGCATGGATA+CGG + chr3_2:14200742-14200761 None:intergenic 40.0%
GTGACATGTATACCTCCAAA+TGG + chr3_2:14200861-14200880 None:intergenic 40.0%
ATTCAGGTCATCAATAAGGC+TGG - chr3_2:14200972-14200991 Msa0396330:intron 40.0%
GTCATCAATAAGGCTGGAAT+TGG - chr3_2:14200978-14200997 Msa0396330:intron 40.0%
CTGGAATTGGGAAACTACTT+GGG - chr3_2:14200991-14201010 Msa0396330:intron 40.0%
ATTAGCTCCCAAGTATTCAG+AGG - chr3_2:14201044-14201063 Msa0396330:intron 40.0%
TCTAGACACTAGGCTATAAG+TGG + chr3_2:14201177-14201196 None:intergenic 40.0%
! TCACGGAATTTCTAGACACT+AGG + chr3_2:14201187-14201206 None:intergenic 40.0%
ATGGAAAGGTGAACCTCAAA+AGG + chr3_2:14201405-14201424 None:intergenic 40.0%
ACCGAGATTCAAATCGTGAT+TGG - chr3_2:14201458-14201477 Msa0396330:intron 40.0%
AAAGAGTGGGTACGAAGTTT+AGG - chr3_2:14201683-14201702 Msa0396330:intron 40.0%
GTCCAAAATAGATGCATGCT+TGG - chr3_2:14201769-14201788 Msa0396330:intron 40.0%
CTGATTGTTGCCAAAATCCA+TGG - chr3_2:14201937-14201956 Msa0396330:intron 40.0%
! ATCATAGCCACATTGATGGT+CGG + chr3_2:14202019-14202038 None:intergenic 40.0%
TTGCAGGCTTATATCTGTCA+AGG - chr3_2:14202150-14202169 Msa0396330:intron 40.0%
CCGTCAGTCTAAATCATTCA+AGG - chr3_2:14202251-14202270 Msa0396330:intron 40.0%
AGTGGTACAGTTTAGTGTAG+CGG - chr3_2:14202465-14202484 Msa0396330:CDS 40.0%
GAAATATGACAGCATGAGTG+AGG + chr3_2:14202616-14202635 None:intergenic 40.0%
GTTGCAACTGATCAATGAGA+GGG + chr3_2:14202640-14202659 None:intergenic 40.0%
AGTTGCAACTGATCAATGAG+AGG + chr3_2:14202641-14202660 None:intergenic 40.0%
GACAGCTTACAAAGAGACTG+TGG + chr3_2:14200202-14200221 None:intergenic 45.0%
AGCAGCAGCCCAAAGAAATA+CGG - chr3_2:14200288-14200307 Msa0396330:three_prime_UTR 45.0%
GTGCACACCCGTATTTCTTT+GGG + chr3_2:14200299-14200318 None:intergenic 45.0%
GACTTTACAGAGACGTTTGG+AGG + chr3_2:14200383-14200402 None:intergenic 45.0%
GACGACTTTACAGAGACGTT+TGG + chr3_2:14200386-14200405 None:intergenic 45.0%
AACGTCTCTGTAAAGTCGTC+CGG - chr3_2:14200386-14200405 Msa0396330:three_prime_UTR 45.0%
GGATGATGAGGTAATCAGGA+AGG + chr3_2:14200451-14200470 None:intergenic 45.0%
! TAGCGGATGATGAGGTAATC+AGG + chr3_2:14200455-14200474 None:intergenic 45.0%
TACCTCATCATCCGCTATTG+CGG - chr3_2:14200458-14200477 Msa0396330:three_prime_UTR 45.0%
GAGACCATGGTAAGTCTGTT+TGG - chr3_2:14200500-14200519 Msa0396330:three_prime_UTR 45.0%
ACCATGGTAAGTCTGTTTGG+TGG - chr3_2:14200503-14200522 Msa0396330:three_prime_UTR 45.0%
TCCACCAAACAGACTTACCA+TGG + chr3_2:14200507-14200526 None:intergenic 45.0%
! ATGGTAAGTCTGTTTGGTGG+AGG - chr3_2:14200506-14200525 Msa0396330:three_prime_UTR 45.0%
GTTTGGATGCTCTTGCTTTG+AGG - chr3_2:14200537-14200556 Msa0396330:three_prime_UTR 45.0%
!! TGCTCTTGCTTTGAGGAAGA+AGG - chr3_2:14200544-14200563 Msa0396330:three_prime_UTR 45.0%
GACAGACACCTAACAAGACA+CGG + chr3_2:14200720-14200739 None:intergenic 45.0%
CACACACATCATCAGTTGTC+TGG + chr3_2:14200774-14200793 None:intergenic 45.0%
GCTGGAATTGGGAAACTACT+TGG - chr3_2:14200990-14201009 Msa0396330:intron 45.0%
TGGGTCACCTCTGAATACTT+GGG + chr3_2:14201054-14201073 None:intergenic 45.0%
TTGGGTCACCTCTGAATACT+TGG + chr3_2:14201055-14201074 None:intergenic 45.0%
ACACTAGGCTATAAGTGGCA+AGG + chr3_2:14201172-14201191 None:intergenic 45.0%
ACAATTTAGCTAAGCTCGCG+AGG - chr3_2:14201247-14201266 Msa0396330:intron 45.0%
! GACATTGCAGCCATGGATTT+TGG + chr3_2:14201950-14201969 None:intergenic 45.0%
TTGTTGTGACATTGCAGCCA+TGG + chr3_2:14201957-14201976 None:intergenic 45.0%
!! CAAATTCGATTTGGCAGAGC+AGG - chr3_2:14202194-14202213 Msa0396330:intron 45.0%
! GATTTAGACTGACGGATCGA+AGG + chr3_2:14202246-14202265 None:intergenic 45.0%
!! AATAAATTAATAATGATTTA+CGG - chr3_2:14202095-14202114 Msa0396330:intron 5.0%
AATTGGCGTGGATGCGGTTA+CGG + chr3_2:14200174-14200193 None:intergenic 50.0%
GGATTGAATTGGCGTGGATG+CGG + chr3_2:14200180-14200199 None:intergenic 50.0%
ACTGTGGGATTGAATTGGCG+TGG + chr3_2:14200186-14200205 None:intergenic 50.0%
GAAGGAAGCCAGCTTCGTTT+GGG + chr3_2:14200245-14200264 None:intergenic 50.0%
!! TTGATGTGCTTTGGTGGTGC+AGG + chr3_2:14200267-14200286 None:intergenic 50.0%
CTGCTGTTGATGTGCTTTGG+TGG + chr3_2:14200273-14200292 None:intergenic 50.0%
CTGCTGCTGTTGATGTGCTT+TGG + chr3_2:14200276-14200295 None:intergenic 50.0%
GCAGCAGCCCAAAGAAATAC+GGG - chr3_2:14200289-14200308 Msa0396330:three_prime_UTR 50.0%
GGTGCACACCCGTATTTCTT+TGG + chr3_2:14200300-14200319 None:intergenic 50.0%
! AAAGGATCCTTGTTTGCGGC+AGG + chr3_2:14200330-14200349 None:intergenic 50.0%
TGTAAAGTCGTCCGGTTGCT+TGG - chr3_2:14200394-14200413 Msa0396330:three_prime_UTR 50.0%
GTAAAGTCGTCCGGTTGCTT+GGG - chr3_2:14200395-14200414 Msa0396330:three_prime_UTR 50.0%
ACCTCATCATCCGCTATTGC+GGG - chr3_2:14200459-14200478 Msa0396330:three_prime_UTR 50.0%
TGCTCGTTGTTTGGAGACCA+TGG - chr3_2:14200487-14200506 Msa0396330:three_prime_UTR 50.0%
TACCTGCGAGAGCAAAAGCT+CGG + chr3_2:14200606-14200625 None:intergenic 50.0%
CGTGTGTTAGTGCAGGTTAC+AGG + chr3_2:14200637-14200656 None:intergenic 50.0%
AGCCTCCTTAGCATCTTCGA+GGG + chr3_2:14201019-14201038 None:intergenic 50.0%
AAGCCTCCTTAGCATCTTCG+AGG + chr3_2:14201020-14201039 None:intergenic 50.0%
TTGCCTACCGACCATCAATG+TGG - chr3_2:14202009-14202028 Msa0396330:intron 50.0%
! TAGCCACATTGATGGTCGGT+AGG + chr3_2:14202015-14202034 None:intergenic 50.0%
CTGTCAAGGTGATGCCCATT+TGG - chr3_2:14202164-14202183 Msa0396330:intron 50.0%
AGTGAGGCAAAGCAAGAGAG+AGG + chr3_2:14202600-14202619 None:intergenic 50.0%
CCAGCTTCGTTTGGGTGATG+GGG + chr3_2:14200237-14200256 None:intergenic 55.0%
GCCAGCTTCGTTTGGGTGAT+GGG + chr3_2:14200238-14200257 None:intergenic 55.0%
AGCCAGCTTCGTTTGGGTGA+TGG + chr3_2:14200239-14200258 None:intergenic 55.0%
GGAAGGAAGCCAGCTTCGTT+TGG + chr3_2:14200246-14200265 None:intergenic 55.0%
!! TGTGCTTTGGTGGTGCAGGA+AGG + chr3_2:14200263-14200282 None:intergenic 55.0%
! ATCCTTGTTTGCGGCAGGCA+CGG + chr3_2:14200325-14200344 None:intergenic 55.0%
TCCGGTTGCTTGGGTAAGTG+CGG - chr3_2:14200404-14200423 Msa0396330:three_prime_UTR 55.0%
ACCGCACTTACCCAAGCAAC+CGG + chr3_2:14200408-14200427 None:intergenic 55.0%
TCAGGAAGGACCACCAGGTT+GGG + chr3_2:14200437-14200456 None:intergenic 55.0%
ATCAGGAAGGACCACCAGGT+TGG + chr3_2:14200438-14200457 None:intergenic 55.0%
GGTAATCAGGAAGGACCACC+AGG + chr3_2:14200442-14200461 None:intergenic 55.0%
!! TCCCGCAATAGCGGATGATG+AGG + chr3_2:14200463-14200482 None:intergenic 55.0%
CATCATCCGCTATTGCGGGA+CGG - chr3_2:14200463-14200482 Msa0396330:three_prime_UTR 55.0%
TGCCCTCGAAGATGCTAAGG+AGG - chr3_2:14201014-14201033 Msa0396330:intron 55.0%
CCCCATCACCCAAACGAAGC+TGG - chr3_2:14200234-14200253 Msa0396330:three_prime_UTR 60.0%
TTGTTTGCGGCAGGCACGGT+TGG + chr3_2:14200321-14200340 None:intergenic 60.0%
AACCGTGCCTGCCGCAAACA+AGG - chr3_2:14200320-14200339 Msa0396330:three_prime_UTR 60.0%
TGCTTGGGTAAGTGCGGTGC+TGG - chr3_2:14200410-14200429 Msa0396330:three_prime_UTR 60.0%
GGGTGCCCTCGAAGATGCTA+AGG - chr3_2:14201011-14201030 Msa0396330:intron 60.0%
GGCGTGGATGCGGTTACGGT+GGG + chr3_2:14200170-14200189 None:intergenic 65.0%
TGGCGTGGATGCGGTTACGG+TGG + chr3_2:14200171-14200190 None:intergenic 65.0%
GAGCAGCCGTCCCGCAATAG+CGG + chr3_2:14200472-14200491 None:intergenic 65.0%
CGGGACGGCTGCTCGTTGTT+TGG - chr3_2:14200478-14200497 Msa0396330:three_prime_UTR 65.0%
! GGCCGAGCTTTTGCTCTCGC+AGG - chr3_2:14200601-14200620 Msa0396330:exon 65.0%
!! GTGCGGTGCTGGTCCCAACC+TGG - chr3_2:14200421-14200440 Msa0396330:three_prime_UTR 70.0%
!! CGGTGCTGGTCCCAACCTGG+TGG - chr3_2:14200424-14200443 Msa0396330:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 14200161 14202747 14200161 ID=Msa0396330;Name=Msa0396330
chr3_2 mRNA 14200161 14202747 14200161 ID=Msa0396330-mRNA-1;Parent=Msa0396330;Name=Msa0396330-mRNA-1;_AED=0.17;_eAED=0.19;_QI=0|0.66|0.75|1|1|1|4|457|227
chr3_2 exon 14200161 14200752 14200161 ID=Msa0396330-mRNA-1:exon:3286;Parent=Msa0396330-mRNA-1
chr3_2 exon 14201843 14201930 14201843 ID=Msa0396330-mRNA-1:exon:3285;Parent=Msa0396330-mRNA-1
chr3_2 exon 14202016 14202065 14202016 ID=Msa0396330-mRNA-1:exon:3284;Parent=Msa0396330-mRNA-1
chr3_2 exon 14202337 14202747 14202337 ID=Msa0396330-mRNA-1:exon:3283;Parent=Msa0396330-mRNA-1
chr3_2 CDS 14202337 14202747 14202337 ID=Msa0396330-mRNA-1:cds;Parent=Msa0396330-mRNA-1
chr3_2 CDS 14202016 14202065 14202016 ID=Msa0396330-mRNA-1:cds;Parent=Msa0396330-mRNA-1
chr3_2 CDS 14201843 14201930 14201843 ID=Msa0396330-mRNA-1:cds;Parent=Msa0396330-mRNA-1
chr3_2 CDS 14200618 14200752 14200618 ID=Msa0396330-mRNA-1:cds;Parent=Msa0396330-mRNA-1
chr3_2 three_prime_UTR 14200161 14200617 14200161 ID=Msa0396330-mRNA-1:three_prime_utr;Parent=Msa0396330-mRNA-1
Gene Sequence

>Msa0396330

ATGAATCCCACCGTAACCGCATCCACGCCAATTCAATCCCACAGTCTCTTTGTAAGCTGTCATGTGGGGACATCCCCATCACCCAAACGAAGCTGGCTTCCTTCCTGCACCACCAAAGCACATCAACAGCAGCAGCCCAAAGAAATACGGGTGTGCACCAACCGTGCCTGCCGCAAACAAGGATCCTTTCAAACTCTAGAAACTCTCTCTGGTATCGCTCCTCCAAACGTCTCTGTAAAGTCGTCCGGTTGCTTGGGTAAGTGCGGTGCTGGTCCCAACCTGGTGGTCCTTCCTGATTACCTCATCATCCGCTATTGCGGGACGGCTGCTCGTTGTTTGGAGACCATGGTAAGTCTGTTTGGTGGAGGAGATAATTGTTTGGATGCTCTTGCTTTGAGGAAGAAGGCTGATGCTATAGATTTAAAACCATTTGGAGGTATACATGTCACATTTAAATGCAGGTCATCAATAAGGCTGGAATTGGGAAACTACTTGGGTGCCCTCGAAGATGCTAAGGAGGCTTTGATATTAGCTCCCAAGTATTCAGAGGCTTATATCTGTCAAGGTGATGCCCATTTGGCATTGAACAAATTCGATTTGGCAGAGCAGGCATATTTAGCATGTTTAGATATAGATCCTTCGATCCGTCAGTCTAAATCATTCAAGGTAGTATTGAATCTTTGA

Protein sequence

>Msa0396330

MNPTVTASTPIQSHSLFVSCHVGTSPSPKRSWLPSCTTKAHQQQQPKEIRVCTNRACRKQGSFQTLETLSGIAPPNVSVKSSGCLGKCGAGPNLVVLPDYLIIRYCGTAARCLETMVSLFGGGDNCLDALALRKKADAIDLKPFGGIHVTFKCRSSIRLELGNYLGALEDAKEALILAPKYSEAYICQGDAHLALNKFDLAEQAYLACLDIDPSIRQSKSFKVVLNL*