Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134410 | sp|P11432|ELI_PEA | 71.429 | 196 | 45 | 1 | 1 | 185 | 1 | 196 | 3.34e-93 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134410 | A0A072VP35 | 97.312 | 186 | 4 | 1 | 1 | 185 | 1 | 186 | 2.39e-126 | 362 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032450 | Msa0134410 | 0.828831 | 7.224291e-55 | -8.615850e-47 |
| Msa0039920 | Msa0134410 | 0.874314 | 7.438397e-68 | -8.615850e-47 |
| Msa0040090 | Msa0134410 | 0.879695 | 1.010435e-69 | -8.615850e-47 |
| Msa0057740 | Msa0134410 | 0.812509 | 4.090766e-51 | -8.615850e-47 |
| Msa0087580 | Msa0134410 | 0.846000 | 2.858718e-59 | -8.615850e-47 |
| Msa0087780 | Msa0134410 | 0.914435 | 1.922941e-84 | -8.615850e-47 |
| Msa0087790 | Msa0134410 | 0.899581 | 1.719183e-77 | -8.615850e-47 |
| Msa0103060 | Msa0134410 | 0.811626 | 6.372631e-51 | -8.615850e-47 |
| Msa0133450 | Msa0134410 | 0.817786 | 2.753099e-52 | -8.615850e-47 |
| Msa0134300 | Msa0134410 | 0.846891 | 1.633227e-59 | -8.615850e-47 |
| Msa0134380 | Msa0134410 | 0.862853 | 3.776577e-64 | -8.615850e-47 |
| Msa0134390 | Msa0134410 | 0.874133 | 8.565243e-68 | -8.615850e-47 |
| Msa0134400 | Msa0134410 | 0.885267 | 9.421493e-72 | -8.615850e-47 |
| Msa0134410 | Msa0134420 | 0.895639 | 7.915019e-76 | -8.615850e-47 |
| Msa0134410 | Msa0180590 | 0.860504 | 1.972774e-63 | -8.615850e-47 |
| Msa0134410 | Msa0180600 | 0.854865 | 9.258512e-62 | -8.615850e-47 |
| Msa0134410 | Msa0180780 | 0.870870 | 1.052541e-66 | -8.615850e-47 |
| Msa0134410 | Msa0188500 | 0.800519 | 1.387453e-48 | -8.615850e-47 |
| Msa0134410 | Msa0197730 | 0.804503 | 2.093987e-49 | -8.615850e-47 |
| Msa0134410 | Msa0230980 | 0.815882 | 7.361602e-52 | -8.615850e-47 |
| Msa0134410 | Msa0270460 | 0.813422 | 2.580143e-51 | -8.615850e-47 |
| Msa0134410 | Msa0341190 | 0.800223 | 1.594280e-48 | -8.615850e-47 |
| Msa0134410 | Msa0378670 | 0.845784 | 3.272590e-59 | -8.615850e-47 |
| Msa0134410 | Msa0378700 | 0.848078 | 7.705896e-60 | -8.615850e-47 |
| Msa0134410 | Msa0428330 | 0.820211 | 7.730427e-53 | -8.615850e-47 |
| Msa0134410 | Msa0431940 | 0.819686 | 1.019420e-52 | -8.615850e-47 |
| Msa0134410 | Msa0456480 | 0.811757 | 5.967707e-51 | -8.615850e-47 |
| Msa0134410 | Msa0500490 | 0.809577 | 1.766234e-50 | -8.615850e-47 |
| Msa0134410 | Msa0568490 | 0.813404 | 2.603497e-51 | -8.615850e-47 |
| Msa0134410 | Msa0580540 | 0.815943 | 7.132817e-52 | -8.615850e-47 |
| Msa0134410 | Msa0615850 | 0.812318 | 4.502799e-51 | -8.615850e-47 |
| Msa0134410 | Msa0621780 | 0.825974 | 3.498534e-54 | -8.615850e-47 |
| Msa0134410 | Msa0698900 | 0.819347 | 1.218486e-52 | -8.615850e-47 |
| Msa0134410 | Msa0739610 | 0.811307 | 7.474718e-51 | -8.615850e-47 |
| Msa0134410 | Msa0748980 | 0.801505 | 8.724913e-49 | -8.615850e-47 |
| Msa0134410 | Msa0756440 | 0.818056 | 2.392399e-52 | -8.615850e-47 |
| Msa0134410 | Msa0795710 | 0.826070 | 3.318256e-54 | -8.615850e-47 |
| Msa0134410 | Msa0833450 | 0.816994 | 4.149252e-52 | -8.615850e-47 |
| Msa0134410 | Msa0834160 | 0.804774 | 1.838167e-49 | -8.615850e-47 |
| Msa0134410 | Msa0835550 | 0.828781 | 7.426716e-55 | -8.615850e-47 |
| Msa0134410 | Msa0861560 | 0.820512 | 6.597361e-53 | -8.615850e-47 |
| Msa0134410 | Msa0864730 | 0.800330 | 1.516424e-48 | -8.615850e-47 |
| Msa0134410 | Msa0868040 | 0.811462 | 6.916609e-51 | -8.615850e-47 |
| Msa0134410 | Msa0999590 | 0.803072 | 4.151100e-49 | -8.615850e-47 |
| Msa0134410 | Msa1102200 | 0.800115 | 1.677081e-48 | -8.615850e-47 |
| Msa0134410 | Msa1195860 | 0.807517 | 4.863689e-50 | -8.615850e-47 |
| Msa0134410 | Msa1203840 | 0.805772 | 1.136005e-49 | -8.615850e-47 |
| Msa0134410 | Msa1203860 | 0.804055 | 2.595769e-49 | -8.615850e-47 |
| Msa0134410 | Msa1209790 | 0.822832 | 1.917752e-53 | -8.615850e-47 |
| Msa0134410 | Msa1209800 | 0.810693 | 1.015433e-50 | -8.615850e-47 |
| Msa0134410 | Msa1283120 | 0.812017 | 5.238740e-51 | -8.615850e-47 |
| Msa0134410 | Msa1330910 | 0.800959 | 1.128281e-48 | -8.615850e-47 |
| Msa0134410 | Msa1342400 | 0.806675 | 7.331762e-50 | -8.615850e-47 |
| Msa0134410 | Msa1349640 | 0.802139 | 6.465470e-49 | -8.615850e-47 |
| Msa0134410 | Msa1364850 | 0.811017 | 8.637718e-51 | -8.615850e-47 |
| Msa0134410 | Msa1368660 | 0.813385 | 2.628752e-51 | -8.615850e-47 |
| Msa0134410 | Msa1384620 | 0.800486 | 1.409150e-48 | -8.615850e-47 |
| Msa0134410 | Msa1384980 | 0.801328 | 9.483678e-49 | -8.615850e-47 |
| Msa0134410 | Msa1403950 | 0.806926 | 6.488450e-50 | -8.615850e-47 |
| Msa0134410 | Msa1435690 | 0.807851 | 4.130554e-50 | -8.615850e-47 |
| Msa0134410 | Msa1451690 | 0.828336 | 9.513292e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134410 | MtrunA17_Chr1g0204721 | 97.312 | 186 | 4 | 1 | 1 | 185 | 1 | 186 | 4.61e-130 | 362 |
| Msa0134410 | MtrunA17_Chr1g0204691 | 94.083 | 169 | 10 | 0 | 17 | 185 | 14 | 182 | 7.37e-116 | 326 |
| Msa0134410 | MtrunA17_Chr1g0204671 | 80.556 | 180 | 21 | 1 | 20 | 185 | 21 | 200 | 1.05e-99 | 286 |
| Msa0134410 | MtrunA17_Chr1g0204521 | 79.775 | 178 | 24 | 1 | 20 | 185 | 21 | 198 | 8.12e-98 | 281 |
| Msa0134410 | MtrunA17_Chr1g0204681 | 80.711 | 197 | 26 | 1 | 1 | 185 | 1 | 197 | 1.79e-97 | 280 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0134410 | AT3G22840.1 | 50.500 | 200 | 79 | 4 | 1 | 185 | 1 | 195 | 1.65e-58 | 182 |
| Msa0134410 | AT4G14690.1 | 49.000 | 200 | 80 | 4 | 1 | 185 | 1 | 193 | 7.73e-55 | 172 |
Find 46 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTCCATTGATCCTTTC+AGG | 0.186558 | 1_3:-65916115 | None:intergenic |
| CAGAAGGGATGTTGTTAAAT+TGG | 0.214729 | 1_3:-65915541 | None:intergenic |
| GTTGTTGACAGTTGCTTCTT+TGG | 0.263072 | 1_3:+65916246 | Msa0134410:CDS |
| ACACTAACACCTTCAAATAA+TGG | 0.344381 | 1_3:-65916271 | None:intergenic |
| ATTCCAAAGCTCTGCATTTG+AGG | 0.355412 | 1_3:-65916320 | None:intergenic |
| GGTTTGTTCGATCAAATATC+TGG | 0.369233 | 1_3:+65916190 | Msa0134410:CDS |
| TATGTTGGGTTTGATTGCTT+TGG | 0.370659 | 1_3:+65916354 | Msa0134410:CDS |
| GGCTGTTACAGAATATGTTA+AGG | 0.394991 | 1_3:+65916375 | Msa0134410:CDS |
| AATGGAAGGTTGGCCATGAT+TGG | 0.396347 | 1_3:+65916127 | Msa0134410:CDS |
| TCTTTGGTTCCATTATTTGA+AGG | 0.404737 | 1_3:+65916262 | Msa0134410:CDS |
| GCTGTTACAGAATATGTTAA+GGG | 0.415066 | 1_3:+65916376 | Msa0134410:CDS |
| TAGCTTGAAAGTTCGATCTA+TGG | 0.429335 | 1_3:+65915592 | Msa0134410:CDS |
| GCAGGCTGTGGTGTCACCTT+TGG | 0.429431 | 1_3:-65915880 | None:intergenic |
| TGTATATGCCTAGCTTTAGA+AGG | 0.430319 | 1_3:+65915564 | Msa0134410:CDS |
| TCTAGGCCTGCTTGAAATGC+TGG | 0.450968 | 1_3:-65915513 | None:intergenic |
| TTGTTAAATTGGTTAACTCT+AGG | 0.463045 | 1_3:-65915530 | None:intergenic |
| TGTCCTCAAATGCAGAGCTT+TGG | 0.467503 | 1_3:+65916317 | Msa0134410:CDS |
| GAATGGAAGACTTGCTATGT+TGG | 0.490221 | 1_3:+65916339 | Msa0134410:CDS |
| CTATAAAACTCTATTAAACA+AGG | 0.499792 | 1_3:-65916405 | None:intergenic |
| AATGGAAGACTTGCTATGTT+GGG | 0.502682 | 1_3:+65916340 | Msa0134410:CDS |
| TGCAGATACAAAACCAATCA+TGG | 0.506046 | 1_3:-65916140 | None:intergenic |
| AGTGTTGAGTCTAAGTCAAA+AGG | 0.509995 | 1_3:+65916289 | Msa0134410:CDS |
| TTCGATCAAATATCTGGTGG+TGG | 0.522060 | 1_3:+65916196 | Msa0134410:CDS |
| GCAGCACCTGAAAGGATCAA+TGG | 0.528131 | 1_3:+65916109 | Msa0134410:CDS |
| CTAGCATTCCTTCTAAAGCT+AGG | 0.532093 | 1_3:-65915572 | None:intergenic |
| TGAAAGGATCAATGGAAGGT+TGG | 0.548007 | 1_3:+65916117 | Msa0134410:CDS |
| CCTGCTTGAAATGCTGGTCA+TGG | 0.548863 | 1_3:-65915507 | None:intergenic |
| CACTTGTATACAAGAACCAT+GGG | 0.556587 | 1_3:-65916222 | None:intergenic |
| CTCTACTACTCGTTCACCAA+AGG | 0.565802 | 1_3:+65915903 | Msa0134410:CDS |
| GGTGAACGAGTAGTAGAGGC+AGG | 0.568710 | 1_3:-65915898 | None:intergenic |
| TTGGTGGGGCAGCACCTGAA+AGG | 0.571883 | 1_3:+65916101 | Msa0134410:CDS |
| CGAGTAGTAGAGGCAGGCTG+TGG | 0.578503 | 1_3:-65915892 | None:intergenic |
| TCAAATGCAGAGCTTTGGAA+TGG | 0.580798 | 1_3:+65916322 | Msa0134410:CDS |
| AAGCTAGGCATATACACAGA+AGG | 0.581115 | 1_3:-65915557 | None:intergenic |
| GGTGGAATTAGCAAAAGGGC+AGG | 0.590541 | 1_3:+65916168 | Msa0134410:CDS |
| TTGTTCGATCAAATATCTGG+TGG | 0.594040 | 1_3:+65916193 | Msa0134410:CDS |
| AGCTAGGCATATACACAGAA+GGG | 0.602384 | 1_3:-65915556 | None:intergenic |
| CCATGACCAGCATTTCAAGC+AGG | 0.603962 | 1_3:+65915507 | Msa0134410:CDS |
| GTGGAATTAGCAAAAGGGCA+GGG | 0.608172 | 1_3:+65916169 | Msa0134410:CDS |
| GAAAGTTCGATCTATGGCTG+AGG | 0.614830 | 1_3:+65915598 | Msa0134410:CDS |
| ACACTTGTATACAAGAACCA+TGG | 0.618963 | 1_3:-65916223 | None:intergenic |
| CTTTGGTGAACGAGTAGTAG+AGG | 0.621298 | 1_3:-65915902 | None:intergenic |
| AGGGCAGAAAGAGCAACCAA+AGG | 0.630670 | 1_3:+65915864 | Msa0134410:CDS |
| CACCTGAAAGGATCAATGGA+AGG | 0.632072 | 1_3:+65916113 | Msa0134410:CDS |
| TATAAAACTCTATTAAACAA+GGG | 0.645194 | 1_3:-65916404 | None:intergenic |
| TATCTGGTGGTGGAATCCCA+TGG | 0.688884 | 1_3:+65916206 | Msa0134410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATCAAACAAATATTA+AGG | + | chr1_3:65915632-65915651 | Msa0134410:intron | 10.0% |
| !! | TATATATCAAACAAATATTA+AGG | + | chr1_3:65915632-65915651 | Msa0134410:intron | 10.0% |
| !! | ATCATGATATCATTATATAA+TGG | + | chr1_3:65916044-65916063 | Msa0134410:intron | 15.0% |
| !! | ATCATGATATCATTATATAA+TGG | + | chr1_3:65916044-65916063 | Msa0134410:intron | 15.0% |
| !!! | GCATATTTAATTTCTATACA+TGG | + | chr1_3:65915678-65915697 | Msa0134410:intron | 20.0% |
| !!! | GCATATTTAATTTCTATACA+TGG | + | chr1_3:65915678-65915697 | Msa0134410:intron | 20.0% |
| ! | TTGTTAAATTGGTTAACTCT+AGG | - | chr1_3:65915533-65915552 | None:intergenic | 25.0% |
| ! | AATCATAAACGTGTTTGATA+TGG | - | chr1_3:65915712-65915731 | None:intergenic | 25.0% |
| !! | GTCATGTAAAGTATTCATTT+CGG | + | chr1_3:65915988-65916007 | Msa0134410:intron | 25.0% |
| ! | TTGTTAAATTGGTTAACTCT+AGG | - | chr1_3:65915533-65915552 | None:intergenic | 25.0% |
| ! | AATCATAAACGTGTTTGATA+TGG | - | chr1_3:65915712-65915731 | None:intergenic | 25.0% |
| !! | GTCATGTAAAGTATTCATTT+CGG | + | chr1_3:65915988-65916007 | Msa0134410:intron | 25.0% |
| !!! | GTCGTTGATTTTGTAAATTC+CGG | + | chr1_3:65915759-65915778 | Msa0134410:intron | 30.0% |
| AGTGTCTCTTTACATTATTC+AGG | + | chr1_3:65915840-65915859 | Msa0134410:intron | 30.0% | |
| TCTCTTTACATTATTCAGGA+AGG | + | chr1_3:65915844-65915863 | Msa0134410:intron | 30.0% | |
| CTCTTTACATTATTCAGGAA+GGG | + | chr1_3:65915845-65915864 | Msa0134410:intron | 30.0% | |
| TTTATTACTATGCTCACCTT+TGG | - | chr1_3:65915922-65915941 | None:intergenic | 30.0% | |
| TTACATGACTATACTCTTCT+TGG | - | chr1_3:65915977-65915996 | None:intergenic | 30.0% | |
| !!! | ATTGGTTTTGTATCTGCAAT+GGG | + | chr1_3:65916145-65916164 | Msa0134410:CDS | 30.0% |
| ! | TCTTTGGTTCCATTATTTGA+AGG | + | chr1_3:65916262-65916281 | Msa0134410:CDS | 30.0% |
| ACACTAACACCTTCAAATAA+TGG | - | chr1_3:65916274-65916293 | None:intergenic | 30.0% | |
| GCTGTTACAGAATATGTTAA+GGG | + | chr1_3:65916376-65916395 | Msa0134410:CDS | 30.0% | |
| !!! | GTCGTTGATTTTGTAAATTC+CGG | + | chr1_3:65915759-65915778 | Msa0134410:intron | 30.0% |
| AGTGTCTCTTTACATTATTC+AGG | + | chr1_3:65915840-65915859 | Msa0134410:intron | 30.0% | |
| TCTCTTTACATTATTCAGGA+AGG | + | chr1_3:65915844-65915863 | Msa0134410:intron | 30.0% | |
| CTCTTTACATTATTCAGGAA+GGG | + | chr1_3:65915845-65915864 | Msa0134410:intron | 30.0% | |
| TTTATTACTATGCTCACCTT+TGG | - | chr1_3:65915922-65915941 | None:intergenic | 30.0% | |
| TTACATGACTATACTCTTCT+TGG | - | chr1_3:65915977-65915996 | None:intergenic | 30.0% | |
| !!! | ATTGGTTTTGTATCTGCAAT+GGG | + | chr1_3:65916145-65916164 | Msa0134410:CDS | 30.0% |
| ! | TCTTTGGTTCCATTATTTGA+AGG | + | chr1_3:65916262-65916281 | Msa0134410:CDS | 30.0% |
| ACACTAACACCTTCAAATAA+TGG | - | chr1_3:65916274-65916293 | None:intergenic | 30.0% | |
| GCTGTTACAGAATATGTTAA+GGG | + | chr1_3:65916376-65916395 | Msa0134410:CDS | 30.0% | |
| CAGAAGGGATGTTGTTAAAT+TGG | - | chr1_3:65915544-65915563 | None:intergenic | 35.0% | |
| !! | TGTATATGCCTAGCTTTAGA+AGG | + | chr1_3:65915564-65915583 | Msa0134410:CDS | 35.0% |
| TAGCTTGAAAGTTCGATCTA+TGG | + | chr1_3:65915592-65915611 | Msa0134410:CDS | 35.0% | |
| ATCTATGGCTGAGGTAATTA+AGG | + | chr1_3:65915607-65915626 | Msa0134410:intron | 35.0% | |
| CATAAACGTGTTTGATATGG+TGG | - | chr1_3:65915709-65915728 | None:intergenic | 35.0% | |
| ! | GCAGATAAGCACAAAGTTTT+CGG | + | chr1_3:65916066-65916085 | Msa0134410:intron | 35.0% |
| ! | CACAAAGTTTTCGGATTTGA+TGG | + | chr1_3:65916075-65916094 | Msa0134410:CDS | 35.0% |
| !! | TTTTCGGATTTGATGGCTTT+TGG | + | chr1_3:65916082-65916101 | Msa0134410:CDS | 35.0% |
| TGCAGATACAAAACCAATCA+TGG | - | chr1_3:65916143-65916162 | None:intergenic | 35.0% | |
| !!! | GATTGGTTTTGTATCTGCAA+TGG | + | chr1_3:65916144-65916163 | Msa0134410:CDS | 35.0% |
| !!! | TTGGTTTTGTATCTGCAATG+GGG | + | chr1_3:65916146-65916165 | Msa0134410:CDS | 35.0% |
| ! | GGTTTGTTCGATCAAATATC+TGG | + | chr1_3:65916190-65916209 | Msa0134410:CDS | 35.0% |
| TTGTTCGATCAAATATCTGG+TGG | + | chr1_3:65916193-65916212 | Msa0134410:CDS | 35.0% | |
| CACTTGTATACAAGAACCAT+GGG | - | chr1_3:65916225-65916244 | None:intergenic | 35.0% | |
| ACACTTGTATACAAGAACCA+TGG | - | chr1_3:65916226-65916245 | None:intergenic | 35.0% | |
| ! | AGTGTTGAGTCTAAGTCAAA+AGG | + | chr1_3:65916289-65916308 | Msa0134410:CDS | 35.0% |
| !! | AATGGAAGACTTGCTATGTT+GGG | + | chr1_3:65916340-65916359 | Msa0134410:CDS | 35.0% |
| TATGTTGGGTTTGATTGCTT+TGG | + | chr1_3:65916354-65916373 | Msa0134410:CDS | 35.0% | |
| GGCTGTTACAGAATATGTTA+AGG | + | chr1_3:65916375-65916394 | Msa0134410:CDS | 35.0% | |
| CAGAAGGGATGTTGTTAAAT+TGG | - | chr1_3:65915544-65915563 | None:intergenic | 35.0% | |
| !! | TGTATATGCCTAGCTTTAGA+AGG | + | chr1_3:65915564-65915583 | Msa0134410:CDS | 35.0% |
| TAGCTTGAAAGTTCGATCTA+TGG | + | chr1_3:65915592-65915611 | Msa0134410:CDS | 35.0% | |
| ATCTATGGCTGAGGTAATTA+AGG | + | chr1_3:65915607-65915626 | Msa0134410:intron | 35.0% | |
| CATAAACGTGTTTGATATGG+TGG | - | chr1_3:65915709-65915728 | None:intergenic | 35.0% | |
| ! | GCAGATAAGCACAAAGTTTT+CGG | + | chr1_3:65916066-65916085 | Msa0134410:intron | 35.0% |
| ! | CACAAAGTTTTCGGATTTGA+TGG | + | chr1_3:65916075-65916094 | Msa0134410:CDS | 35.0% |
| !! | TTTTCGGATTTGATGGCTTT+TGG | + | chr1_3:65916082-65916101 | Msa0134410:CDS | 35.0% |
| TGCAGATACAAAACCAATCA+TGG | - | chr1_3:65916143-65916162 | None:intergenic | 35.0% | |
| !!! | GATTGGTTTTGTATCTGCAA+TGG | + | chr1_3:65916144-65916163 | Msa0134410:CDS | 35.0% |
| !!! | TTGGTTTTGTATCTGCAATG+GGG | + | chr1_3:65916146-65916165 | Msa0134410:CDS | 35.0% |
| ! | GGTTTGTTCGATCAAATATC+TGG | + | chr1_3:65916190-65916209 | Msa0134410:CDS | 35.0% |
| TTGTTCGATCAAATATCTGG+TGG | + | chr1_3:65916193-65916212 | Msa0134410:CDS | 35.0% | |
| CACTTGTATACAAGAACCAT+GGG | - | chr1_3:65916225-65916244 | None:intergenic | 35.0% | |
| ACACTTGTATACAAGAACCA+TGG | - | chr1_3:65916226-65916245 | None:intergenic | 35.0% | |
| ! | AGTGTTGAGTCTAAGTCAAA+AGG | + | chr1_3:65916289-65916308 | Msa0134410:CDS | 35.0% |
| !! | AATGGAAGACTTGCTATGTT+GGG | + | chr1_3:65916340-65916359 | Msa0134410:CDS | 35.0% |
| TATGTTGGGTTTGATTGCTT+TGG | + | chr1_3:65916354-65916373 | Msa0134410:CDS | 35.0% | |
| GGCTGTTACAGAATATGTTA+AGG | + | chr1_3:65916375-65916394 | Msa0134410:CDS | 35.0% | |
| AGCTAGGCATATACACAGAA+GGG | - | chr1_3:65915559-65915578 | None:intergenic | 40.0% | |
| AAGCTAGGCATATACACAGA+AGG | - | chr1_3:65915560-65915579 | None:intergenic | 40.0% | |
| !! | CTAGCATTCCTTCTAAAGCT+AGG | - | chr1_3:65915575-65915594 | None:intergenic | 40.0% |
| AACCTTCCATTGATCCTTTC+AGG | - | chr1_3:65916118-65916137 | None:intergenic | 40.0% | |
| TGAAAGGATCAATGGAAGGT+TGG | + | chr1_3:65916117-65916136 | Msa0134410:CDS | 40.0% | |
| !!! | TGGTTTTGTATCTGCAATGG+GGG | + | chr1_3:65916147-65916166 | Msa0134410:CDS | 40.0% |
| TTCGATCAAATATCTGGTGG+TGG | + | chr1_3:65916196-65916215 | Msa0134410:CDS | 40.0% | |
| GTTGTTGACAGTTGCTTCTT+TGG | + | chr1_3:65916246-65916265 | Msa0134410:CDS | 40.0% | |
| ATTCCAAAGCTCTGCATTTG+AGG | - | chr1_3:65916323-65916342 | None:intergenic | 40.0% | |
| !! | TCAAATGCAGAGCTTTGGAA+TGG | + | chr1_3:65916322-65916341 | Msa0134410:CDS | 40.0% |
| !! | GAATGGAAGACTTGCTATGT+TGG | + | chr1_3:65916339-65916358 | Msa0134410:CDS | 40.0% |
| AGCTAGGCATATACACAGAA+GGG | - | chr1_3:65915559-65915578 | None:intergenic | 40.0% | |
| AAGCTAGGCATATACACAGA+AGG | - | chr1_3:65915560-65915579 | None:intergenic | 40.0% | |
| !! | CTAGCATTCCTTCTAAAGCT+AGG | - | chr1_3:65915575-65915594 | None:intergenic | 40.0% |
| AACCTTCCATTGATCCTTTC+AGG | - | chr1_3:65916118-65916137 | None:intergenic | 40.0% | |
| TGAAAGGATCAATGGAAGGT+TGG | + | chr1_3:65916117-65916136 | Msa0134410:CDS | 40.0% | |
| !!! | TGGTTTTGTATCTGCAATGG+GGG | + | chr1_3:65916147-65916166 | Msa0134410:CDS | 40.0% |
| TTCGATCAAATATCTGGTGG+TGG | + | chr1_3:65916196-65916215 | Msa0134410:CDS | 40.0% | |
| GTTGTTGACAGTTGCTTCTT+TGG | + | chr1_3:65916246-65916265 | Msa0134410:CDS | 40.0% | |
| ATTCCAAAGCTCTGCATTTG+AGG | - | chr1_3:65916323-65916342 | None:intergenic | 40.0% | |
| !! | TCAAATGCAGAGCTTTGGAA+TGG | + | chr1_3:65916322-65916341 | Msa0134410:CDS | 40.0% |
| !! | GAATGGAAGACTTGCTATGT+TGG | + | chr1_3:65916339-65916358 | Msa0134410:CDS | 40.0% |
| GAAAGTTCGATCTATGGCTG+AGG | + | chr1_3:65915598-65915617 | Msa0134410:CDS | 45.0% | |
| TCTACAACTGCGAGACGTTA+TGG | - | chr1_3:65915790-65915809 | None:intergenic | 45.0% | |
| CTTTGGTGAACGAGTAGTAG+AGG | - | chr1_3:65915905-65915924 | None:intergenic | 45.0% | |
| CTCTACTACTCGTTCACCAA+AGG | + | chr1_3:65915903-65915922 | Msa0134410:CDS | 45.0% | |
| !! | TCGGATTTGATGGCTTTTGG+TGG | + | chr1_3:65916085-65916104 | Msa0134410:CDS | 45.0% |
| !! | CGGATTTGATGGCTTTTGGT+GGG | + | chr1_3:65916086-65916105 | Msa0134410:CDS | 45.0% |
| !! | GGATTTGATGGCTTTTGGTG+GGG | + | chr1_3:65916087-65916106 | Msa0134410:CDS | 45.0% |
| CACCTGAAAGGATCAATGGA+AGG | + | chr1_3:65916113-65916132 | Msa0134410:CDS | 45.0% | |
| ! | AATGGAAGGTTGGCCATGAT+TGG | + | chr1_3:65916127-65916146 | Msa0134410:CDS | 45.0% |
| ! | TTTTGTATCTGCAATGGGGG+TGG | + | chr1_3:65916150-65916169 | Msa0134410:CDS | 45.0% |
| ATGGGGGTGGAATTAGCAAA+AGG | + | chr1_3:65916163-65916182 | Msa0134410:CDS | 45.0% | |
| TGGGGGTGGAATTAGCAAAA+GGG | + | chr1_3:65916164-65916183 | Msa0134410:CDS | 45.0% | |
| GTGGAATTAGCAAAAGGGCA+GGG | + | chr1_3:65916169-65916188 | Msa0134410:CDS | 45.0% | |
| TGTCCTCAAATGCAGAGCTT+TGG | + | chr1_3:65916317-65916336 | Msa0134410:CDS | 45.0% | |
| GAAAGTTCGATCTATGGCTG+AGG | + | chr1_3:65915598-65915617 | Msa0134410:CDS | 45.0% | |
| TCTACAACTGCGAGACGTTA+TGG | - | chr1_3:65915790-65915809 | None:intergenic | 45.0% | |
| CTTTGGTGAACGAGTAGTAG+AGG | - | chr1_3:65915905-65915924 | None:intergenic | 45.0% | |
| CTCTACTACTCGTTCACCAA+AGG | + | chr1_3:65915903-65915922 | Msa0134410:CDS | 45.0% | |
| !! | TCGGATTTGATGGCTTTTGG+TGG | + | chr1_3:65916085-65916104 | Msa0134410:CDS | 45.0% |
| !! | CGGATTTGATGGCTTTTGGT+GGG | + | chr1_3:65916086-65916105 | Msa0134410:CDS | 45.0% |
| !! | GGATTTGATGGCTTTTGGTG+GGG | + | chr1_3:65916087-65916106 | Msa0134410:CDS | 45.0% |
| CACCTGAAAGGATCAATGGA+AGG | + | chr1_3:65916113-65916132 | Msa0134410:CDS | 45.0% | |
| ! | AATGGAAGGTTGGCCATGAT+TGG | + | chr1_3:65916127-65916146 | Msa0134410:CDS | 45.0% |
| ! | TTTTGTATCTGCAATGGGGG+TGG | + | chr1_3:65916150-65916169 | Msa0134410:CDS | 45.0% |
| ATGGGGGTGGAATTAGCAAA+AGG | + | chr1_3:65916163-65916182 | Msa0134410:CDS | 45.0% | |
| TGGGGGTGGAATTAGCAAAA+GGG | + | chr1_3:65916164-65916183 | Msa0134410:CDS | 45.0% | |
| GTGGAATTAGCAAAAGGGCA+GGG | + | chr1_3:65916169-65916188 | Msa0134410:CDS | 45.0% | |
| TGTCCTCAAATGCAGAGCTT+TGG | + | chr1_3:65916317-65916336 | Msa0134410:CDS | 45.0% | |
| CCTGCTTGAAATGCTGGTCA+TGG | - | chr1_3:65915510-65915529 | None:intergenic | 50.0% | |
| CCATGACCAGCATTTCAAGC+AGG | + | chr1_3:65915507-65915526 | Msa0134410:CDS | 50.0% | |
| TCTAGGCCTGCTTGAAATGC+TGG | - | chr1_3:65915516-65915535 | None:intergenic | 50.0% | |
| GCGAGACGTTATGGATTCTC+CGG | - | chr1_3:65915781-65915800 | None:intergenic | 50.0% | |
| AGGGCAGAAAGAGCAACCAA+AGG | + | chr1_3:65915864-65915883 | Msa0134410:CDS | 50.0% | |
| GCAGCACCTGAAAGGATCAA+TGG | + | chr1_3:65916109-65916128 | Msa0134410:CDS | 50.0% | |
| GGTGGAATTAGCAAAAGGGC+AGG | + | chr1_3:65916168-65916187 | Msa0134410:CDS | 50.0% | |
| !! | TATCTGGTGGTGGAATCCCA+TGG | + | chr1_3:65916206-65916225 | Msa0134410:CDS | 50.0% |
| CCTGCTTGAAATGCTGGTCA+TGG | - | chr1_3:65915510-65915529 | None:intergenic | 50.0% | |
| CCATGACCAGCATTTCAAGC+AGG | + | chr1_3:65915507-65915526 | Msa0134410:CDS | 50.0% | |
| TCTAGGCCTGCTTGAAATGC+TGG | - | chr1_3:65915516-65915535 | None:intergenic | 50.0% | |
| GCGAGACGTTATGGATTCTC+CGG | - | chr1_3:65915781-65915800 | None:intergenic | 50.0% | |
| AGGGCAGAAAGAGCAACCAA+AGG | + | chr1_3:65915864-65915883 | Msa0134410:CDS | 50.0% | |
| GCAGCACCTGAAAGGATCAA+TGG | + | chr1_3:65916109-65916128 | Msa0134410:CDS | 50.0% | |
| GGTGGAATTAGCAAAAGGGC+AGG | + | chr1_3:65916168-65916187 | Msa0134410:CDS | 50.0% | |
| !! | TATCTGGTGGTGGAATCCCA+TGG | + | chr1_3:65916206-65916225 | Msa0134410:CDS | 50.0% |
| GGTGAACGAGTAGTAGAGGC+AGG | - | chr1_3:65915901-65915920 | None:intergenic | 55.0% | |
| GGTGAACGAGTAGTAGAGGC+AGG | - | chr1_3:65915901-65915920 | None:intergenic | 55.0% | |
| !! | GCAGGCTGTGGTGTCACCTT+TGG | - | chr1_3:65915883-65915902 | None:intergenic | 60.0% |
| CGAGTAGTAGAGGCAGGCTG+TGG | - | chr1_3:65915895-65915914 | None:intergenic | 60.0% | |
| TTGGTGGGGCAGCACCTGAA+AGG | + | chr1_3:65916101-65916120 | Msa0134410:CDS | 60.0% | |
| !! | GCAGGCTGTGGTGTCACCTT+TGG | - | chr1_3:65915883-65915902 | None:intergenic | 60.0% |
| CGAGTAGTAGAGGCAGGCTG+TGG | - | chr1_3:65915895-65915914 | None:intergenic | 60.0% | |
| TTGGTGGGGCAGCACCTGAA+AGG | + | chr1_3:65916101-65916120 | Msa0134410:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 65915470 | 65916414 | 65915470 | ID=Msa0134410;Name=Msa0134410 |
| chr1_3 | mRNA | 65915470 | 65916414 | 65915470 | ID=Msa0134410-mRNA-1;Parent=Msa0134410;Name=Msa0134410-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|1|1|1|3|0|185 |
| chr1_3 | exon | 65915470 | 65915619 | 65915470 | ID=Msa0134410-mRNA-1:exon:22445;Parent=Msa0134410-mRNA-1 |
| chr1_3 | exon | 65915862 | 65915924 | 65915862 | ID=Msa0134410-mRNA-1:exon:22446;Parent=Msa0134410-mRNA-1 |
| chr1_3 | exon | 65916070 | 65916414 | 65916070 | ID=Msa0134410-mRNA-1:exon:22447;Parent=Msa0134410-mRNA-1 |
| chr1_3 | CDS | 65915470 | 65915619 | 65915470 | ID=Msa0134410-mRNA-1:cds;Parent=Msa0134410-mRNA-1 |
| chr1_3 | CDS | 65915862 | 65915924 | 65915862 | ID=Msa0134410-mRNA-1:cds;Parent=Msa0134410-mRNA-1 |
| chr1_3 | CDS | 65916070 | 65916414 | 65916070 | ID=Msa0134410-mRNA-1:cds;Parent=Msa0134410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
