AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0134380


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134380 MtrunA17_Chr1g0204671 97.500 200 4 1 1 199 1 200 1.12e-138 385
Msa0134380 MtrunA17_Chr1g0204681 92.778 180 11 1 20 199 20 197 2.49e-111 316
Msa0134380 MtrunA17_Chr1g0204521 89.444 180 17 1 20 199 21 198 2.02e-110 313
Msa0134380 MtrunA17_Chr1g0204721 81.667 180 19 2 20 199 21 186 1.18e-101 291
Msa0134380 MtrunA17_Chr1g0204691 79.397 199 24 3 1 199 1 182 5.94e-99 284
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0134380 AT3G22840.1 53.234 201 86 4 1 199 1 195 7.63e-62 191
Msa0134380 AT4G14690.1 51.485 202 86 4 1 199 1 193 1.35e-57 180

Find 91 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTGTTATTGACTTCTATT+AGG 0.168244 1_3:+65905077 Msa0134380:three_prime_UTR
CAGAAGGGATGTTGTTAAAT+TGG 0.214729 1_3:-65904115 None:intergenic
TAGGAACACGATTAAGGTTT+AGG 0.232835 1_3:+65904919 Msa0134380:three_prime_UTR
GGTGCTGATGGTGGTGTAAT+TGG 0.245963 1_3:-65904397 None:intergenic
TTTCTATAGGAACACGATTA+AGG 0.263324 1_3:+65904913 Msa0134380:three_prime_UTR
TCACTTCACTACACCTTAGA+TGG 0.287308 1_3:-65903945 None:intergenic
TGGTGGAATTCCATGGTTCT+TGG 0.288858 1_3:+65904707 Msa0134380:CDS
GGTGGAATTCCATGGTTCTT+GGG 0.299911 1_3:+65904708 Msa0134380:CDS
AAGGTTTAGGGTTTATGATT+AGG 0.303616 1_3:+65904932 Msa0134380:three_prime_UTR
GGTTTGTTTGATCAAATATC+TGG 0.314167 1_3:+65904684 Msa0134380:CDS
CTACCAACCTTAACCATCTA+AGG 0.316626 1_3:+65903932 Msa0134380:five_prime_UTR
AGGAACACGATTAAGGTTTA+GGG 0.330309 1_3:+65904920 Msa0134380:three_prime_UTR
TATGTTGGGTTTAATTGCTT+TGG 0.338821 1_3:+65904848 Msa0134380:CDS
GTTGGTTGTGGTTGTGGTGG+TGG 0.344690 1_3:-65904424 None:intergenic
AGAAACTACGATTTATAGAT+TGG 0.347947 1_3:-65905137 None:intergenic
TGTGGTTGTGGTGGTGGAGT+TGG 0.352890 1_3:-65904418 None:intergenic
TGTGTTATTGACTTCTATTA+GGG 0.356709 1_3:+65905078 Msa0134380:three_prime_UTR
ATTGGGTCTACAGGCACCTT+TGG 0.360861 1_3:-65904379 None:intergenic
AAGCATTGCGAGGGACATTA+TGG 0.364122 1_3:-65903868 None:intergenic
TAAATCGTAGTTTCTCTTTG+AGG 0.367034 1_3:+65905145 Msa0134380:three_prime_UTR
CACTACACCTTAGATGGTTA+AGG 0.368917 1_3:-65903939 None:intergenic
ATACATAAAGTTTCATGTAT+TGG 0.388451 1_3:-65904957 None:intergenic
AATGGAAGGTTGGCTATGAT+TGG 0.393839 1_3:+65904621 Msa0134380:CDS
GGCCTTTACAGAGTATGTTA+AGG 0.395379 1_3:+65904869 Msa0134380:CDS
GCCTTTACAGAGTATGTTAA+GGG 0.401917 1_3:+65904870 Msa0134380:CDS
CCATTGATTCTCTCAGGTGC+TGG 0.411549 1_3:-65904603 None:intergenic
GGTGGTGGAGTTGGTGCTGA+TGG 0.417357 1_3:-65904409 None:intergenic
ATTAAGGTCTATAAAATTTG+TGG 0.421914 1_3:+65905107 Msa0134380:three_prime_UTR
CACCTTTGGTGAACGAGTAT+AGG 0.424707 1_3:-65904446 None:intergenic
AACCTTCCATTGATTCTCTC+AGG 0.436061 1_3:-65904609 None:intergenic
TGTCCTCAGATGCAGAACTA+TGG 0.436951 1_3:+65904811 Msa0134380:CDS
GTGCTGATGGTGGTGTAATT+GGG 0.440700 1_3:-65904396 None:intergenic
GAATGGAAGAATTGCTATGT+TGG 0.442937 1_3:+65904833 Msa0134380:CDS
CTTGTGTAATAGATTTCTAT+AGG 0.446139 1_3:+65904900 Msa0134380:exon
GTATAGGTTGGTTGTGGTTG+TGG 0.452125 1_3:-65904430 None:intergenic
TTGTTAAATTGGTTAACTCT+AGG 0.463045 1_3:-65904104 None:intergenic
GTGGAATTCCATGGTTCTTG+GGG 0.468120 1_3:+65904709 Msa0134380:CDS
GGTGGAGTTGGTGCTGATGG+TGG 0.468618 1_3:-65904406 None:intergenic
AGTAAATTATTCACTCCTGA+TGG 0.477561 1_3:+65905200 Msa0134380:three_prime_UTR
AAACTTTATGTATGTTCGTA+TGG 0.478333 1_3:+65904967 Msa0134380:three_prime_UTR
CATTAAGAACTTATAATCAA+TGG 0.480276 1_3:+65904025 Msa0134380:exon
CGGATTTGATGGCATTTGGT+GGG 0.485102 1_3:+65904580 Msa0134380:CDS
TCGGATTTGATGGCATTTGG+TGG 0.487791 1_3:+65904579 Msa0134380:CDS
ATTCATCAAATCATCCCATC+AGG 0.494136 1_3:-65905215 None:intergenic
GGAATGCTAGCCTCAAAGTT+CGG 0.497529 1_3:+65904159 Msa0134380:CDS
AGAAGGTTGCGTATATAGAA+TGG 0.508723 1_3:-65903897 None:intergenic
AGTGTTGAGTCTAAGTCAAA+AGG 0.509995 1_3:+65904783 Msa0134380:CDS
GGTAGATATAGCATTGAAGA+AGG 0.510849 1_3:-65903914 None:intergenic
AATGGAAGAATTGCTATGTT+GGG 0.512582 1_3:+65904834 Msa0134380:CDS
GGTGGTGTAATTGGGTCTAC+AGG 0.516474 1_3:-65904388 None:intergenic
CCAGCACCTGAGAGAATCAA+TGG 0.516939 1_3:+65904603 Msa0134380:CDS
TCTAGGCCTGCTAGGAATGC+TGG 0.517121 1_3:-65904087 None:intergenic
CCATGACCAGCATTCCTAGC+AGG 0.521757 1_3:+65904081 Msa0134380:CDS
CCTGCTAGGAATGCTGGTCA+TGG 0.521892 1_3:-65904081 None:intergenic
TAGGTTGGTTGTGGTTGTGG+TGG 0.523841 1_3:-65904427 None:intergenic
CAGCCATGGACCGAACTTTG+AGG 0.527132 1_3:-65904169 None:intergenic
CGAAAACATTACCTCAGCCA+TGG 0.528935 1_3:-65904183 None:intergenic
CAAAGTTCGGTCCATGGCTG+AGG 0.533870 1_3:+65904172 Msa0134380:CDS
CTAGCATTCCTTCTGAAGCT+AGG 0.541676 1_3:-65904146 None:intergenic
GGTGGAGATAGCAAATGGAC+AGG 0.547189 1_3:+65904662 Msa0134380:CDS
ATTCCATAGTTCTGCATCTG+AGG 0.548696 1_3:-65904814 None:intergenic
ACCCTTAACATACTCTGTAA+AGG 0.552111 1_3:-65904871 None:intergenic
GTTGCGTATATAGAATGGAA+TGG 0.553664 1_3:-65903892 None:intergenic
TTTGATCAAATATCTGGTGG+TGG 0.559193 1_3:+65904690 Msa0134380:CDS
TGAGAGAATCAATGGAAGGT+TGG 0.560259 1_3:+65904611 Msa0134380:CDS
GAACGAGTATAGGTTGGTTG+TGG 0.560878 1_3:-65904436 None:intergenic
GTAAATTATTCACTCCTGAT+GGG 0.561419 1_3:+65905201 Msa0134380:three_prime_UTR
TTGTTTGATCAAATATCTGG+TGG 0.570609 1_3:+65904687 Msa0134380:CDS
TGGTTAACTCTAGGCCTGCT+AGG 0.578482 1_3:-65904095 None:intergenic
TAGCCTCAAAGTTCGGTCCA+TGG 0.581082 1_3:+65904166 Msa0134380:CDS
CTATAGAAATCTATTACACA+AGG 0.584441 1_3:-65904899 None:intergenic
TAGACTCAACACTAACACCT+TGG 0.586516 1_3:-65904773 None:intergenic
TTTGGTGAACGAGTATAGGT+TGG 0.589396 1_3:-65904442 None:intergenic
AAGCTAGGCATATACACAGA+AGG 0.589450 1_3:-65904131 None:intergenic
TGTTATTGACTTCTATTAGG+GGG 0.590954 1_3:+65905080 Msa0134380:three_prime_UTR
AACCTATACTCGTTCACCAA+AGG 0.597244 1_3:+65904444 Msa0134380:CDS
TCAGATGCAGAACTATGGAA+TGG 0.597938 1_3:+65904816 Msa0134380:CDS
TGTATATGCCTAGCTTCAGA+AGG 0.600911 1_3:+65904138 Msa0134380:CDS
AGCTAGGCATATACACAGAA+GGG 0.613758 1_3:-65904130 None:intergenic
TATCTGGTGGTGGAATTCCA+TGG 0.624337 1_3:+65904700 Msa0134380:CDS
ACACCTTAGATGGTTAAGGT+TGG 0.627193 1_3:-65903935 None:intergenic
TGGAATGGAAAGCATTGCGA+GGG 0.630529 1_3:-65903877 None:intergenic
AGGGCAGAAAGAGCAACCAA+AGG 0.630670 1_3:+65904363 Msa0134380:CDS
ACACTTGTCCCCAAGAACCA+TGG 0.633615 1_3:-65904717 None:intergenic
GTGTTATTGACTTCTATTAG+GGG 0.645248 1_3:+65905079 Msa0134380:three_prime_UTR
GTGGAGATAGCAAATGGACA+GGG 0.645295 1_3:+65904663 Msa0134380:CDS
CACCTGAGAGAATCAATGGA+AGG 0.646646 1_3:+65904607 Msa0134380:CDS
ATGGAATGGAAAGCATTGCG+AGG 0.664294 1_3:-65903878 None:intergenic
AGAAATCTATTACACAAGGG+AGG 0.697899 1_3:-65904895 None:intergenic
TATAGAAATCTATTACACAA+GGG 0.701766 1_3:-65904898 None:intergenic
GGATCTTCTTACACACTACG+TGG 0.726624 1_3:+65903843 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTAATAATGATGAAAATA+TGG + chr1_3:65904538-65904557 Msa0134380:intron 15.0%
!!! TTAGTTTTAATTTTTAAGAG+AGG + chr1_3:65905174-65905193 Msa0134380:three_prime_UTR 15.0%
!!! TAGTTTTAATTTTTAAGAGA+GGG + chr1_3:65905175-65905194 Msa0134380:three_prime_UTR 15.0%
!! AAGTAATAATGATGAAAATA+TGG + chr1_3:65904538-65904557 Msa0134380:intron 15.0%
!!! TTAGTTTTAATTTTTAAGAG+AGG + chr1_3:65905174-65905193 Msa0134380:three_prime_UTR 15.0%
!!! TAGTTTTAATTTTTAAGAGA+GGG + chr1_3:65905175-65905194 Msa0134380:three_prime_UTR 15.0%
!! CATTAAGAACTTATAATCAA+TGG + chr1_3:65904025-65904044 Msa0134380:exon 20.0%
!!! AGTTTTTCATTACATTTATC+AGG + chr1_3:65904339-65904358 Msa0134380:intron 20.0%
!! TATAGAAATCTATTACACAA+GGG - chr1_3:65904901-65904920 None:intergenic 20.0%
!! ATACATAAAGTTTCATGTAT+TGG - chr1_3:65904960-65904979 None:intergenic 20.0%
!! ATTAAGGTCTATAAAATTTG+TGG + chr1_3:65905107-65905126 Msa0134380:three_prime_UTR 20.0%
!! CATTAAGAACTTATAATCAA+TGG + chr1_3:65904025-65904044 Msa0134380:exon 20.0%
!!! AGTTTTTCATTACATTTATC+AGG + chr1_3:65904339-65904358 Msa0134380:intron 20.0%
!! TATAGAAATCTATTACACAA+GGG - chr1_3:65904901-65904920 None:intergenic 20.0%
!! ATACATAAAGTTTCATGTAT+TGG - chr1_3:65904960-65904979 None:intergenic 20.0%
!! ATTAAGGTCTATAAAATTTG+TGG + chr1_3:65905107-65905126 Msa0134380:three_prime_UTR 20.0%
!!! ACAAAGTATTTTTTGAGGAT+GGG - chr1_3:65903997-65904016 None:intergenic 25.0%
! TTGTTAAATTGGTTAACTCT+AGG - chr1_3:65904107-65904126 None:intergenic 25.0%
!! TGTTTTCGAAAACAGATTTA+AGG + chr1_3:65904198-65904217 Msa0134380:intron 25.0%
! TTTCATTACATTTATCAGGA+AGG + chr1_3:65904343-65904362 Msa0134380:intron 25.0%
! TTCATTACATTTATCAGGAA+GGG + chr1_3:65904344-65904363 Msa0134380:intron 25.0%
! CTATAGAAATCTATTACACA+AGG - chr1_3:65904902-65904921 None:intergenic 25.0%
! CTTGTGTAATAGATTTCTAT+AGG + chr1_3:65904900-65904919 Msa0134380:exon 25.0%
! AAACTTTATGTATGTTCGTA+TGG + chr1_3:65904967-65904986 Msa0134380:three_prime_UTR 25.0%
!!! TTGTGTTATTGACTTCTATT+AGG + chr1_3:65905077-65905096 Msa0134380:three_prime_UTR 25.0%
!!! TGTGTTATTGACTTCTATTA+GGG + chr1_3:65905078-65905097 Msa0134380:three_prime_UTR 25.0%
! AGAAACTACGATTTATAGAT+TGG - chr1_3:65905140-65905159 None:intergenic 25.0%
!!! ACAAAGTATTTTTTGAGGAT+GGG - chr1_3:65903997-65904016 None:intergenic 25.0%
! TTGTTAAATTGGTTAACTCT+AGG - chr1_3:65904107-65904126 None:intergenic 25.0%
!! TGTTTTCGAAAACAGATTTA+AGG + chr1_3:65904198-65904217 Msa0134380:intron 25.0%
! TTTCATTACATTTATCAGGA+AGG + chr1_3:65904343-65904362 Msa0134380:intron 25.0%
! TTCATTACATTTATCAGGAA+GGG + chr1_3:65904344-65904363 Msa0134380:intron 25.0%
! CTATAGAAATCTATTACACA+AGG - chr1_3:65904902-65904921 None:intergenic 25.0%
! CTTGTGTAATAGATTTCTAT+AGG + chr1_3:65904900-65904919 Msa0134380:exon 25.0%
! AAACTTTATGTATGTTCGTA+TGG + chr1_3:65904967-65904986 Msa0134380:three_prime_UTR 25.0%
!!! TTGTGTTATTGACTTCTATT+AGG + chr1_3:65905077-65905096 Msa0134380:three_prime_UTR 25.0%
!!! TGTGTTATTGACTTCTATTA+GGG + chr1_3:65905078-65905097 Msa0134380:three_prime_UTR 25.0%
! AGAAACTACGATTTATAGAT+TGG - chr1_3:65905140-65905159 None:intergenic 25.0%
!!! GACAAAGTATTTTTTGAGGA+TGG - chr1_3:65903998-65904017 None:intergenic 30.0%
!!! CAACGACAAAGTATTTTTTG+AGG - chr1_3:65904002-65904021 None:intergenic 30.0%
TGCATAATGCAACAAGTTAA+TGG + chr1_3:65904254-65904273 Msa0134380:intron 30.0%
GCATAATGCAACAAGTTAAT+GGG + chr1_3:65904255-65904274 Msa0134380:intron 30.0%
! GGTTTGTTTGATCAAATATC+TGG + chr1_3:65904684-65904703 Msa0134380:CDS 30.0%
TTGTTTGATCAAATATCTGG+TGG + chr1_3:65904687-65904706 Msa0134380:CDS 30.0%
!! TCTTTGATTCCATTTTTCCA+AGG + chr1_3:65904756-65904775 Msa0134380:CDS 30.0%
AATGGAAGAATTGCTATGTT+GGG + chr1_3:65904834-65904853 Msa0134380:CDS 30.0%
TATGTTGGGTTTAATTGCTT+TGG + chr1_3:65904848-65904867 Msa0134380:CDS 30.0%
TTTCTATAGGAACACGATTA+AGG + chr1_3:65904913-65904932 Msa0134380:three_prime_UTR 30.0%
! AAGGTTTAGGGTTTATGATT+AGG + chr1_3:65904932-65904951 Msa0134380:three_prime_UTR 30.0%
! TGTGACAATTACAAGCTTTT+AGG - chr1_3:65905054-65905073 None:intergenic 30.0%
!! GTGTTATTGACTTCTATTAG+GGG + chr1_3:65905079-65905098 Msa0134380:three_prime_UTR 30.0%
!! TGTTATTGACTTCTATTAGG+GGG + chr1_3:65905080-65905099 Msa0134380:three_prime_UTR 30.0%
TAAATCGTAGTTTCTCTTTG+AGG + chr1_3:65905145-65905164 Msa0134380:three_prime_UTR 30.0%
AGTAAATTATTCACTCCTGA+TGG + chr1_3:65905200-65905219 Msa0134380:three_prime_UTR 30.0%
GTAAATTATTCACTCCTGAT+GGG + chr1_3:65905201-65905220 Msa0134380:three_prime_UTR 30.0%
!!! GACAAAGTATTTTTTGAGGA+TGG - chr1_3:65903998-65904017 None:intergenic 30.0%
!!! CAACGACAAAGTATTTTTTG+AGG - chr1_3:65904002-65904021 None:intergenic 30.0%
TGCATAATGCAACAAGTTAA+TGG + chr1_3:65904254-65904273 Msa0134380:intron 30.0%
GCATAATGCAACAAGTTAAT+GGG + chr1_3:65904255-65904274 Msa0134380:intron 30.0%
! GGTTTGTTTGATCAAATATC+TGG + chr1_3:65904684-65904703 Msa0134380:CDS 30.0%
TTGTTTGATCAAATATCTGG+TGG + chr1_3:65904687-65904706 Msa0134380:CDS 30.0%
!! TCTTTGATTCCATTTTTCCA+AGG + chr1_3:65904756-65904775 Msa0134380:CDS 30.0%
AATGGAAGAATTGCTATGTT+GGG + chr1_3:65904834-65904853 Msa0134380:CDS 30.0%
TATGTTGGGTTTAATTGCTT+TGG + chr1_3:65904848-65904867 Msa0134380:CDS 30.0%
TTTCTATAGGAACACGATTA+AGG + chr1_3:65904913-65904932 Msa0134380:three_prime_UTR 30.0%
! AAGGTTTAGGGTTTATGATT+AGG + chr1_3:65904932-65904951 Msa0134380:three_prime_UTR 30.0%
! TGTGACAATTACAAGCTTTT+AGG - chr1_3:65905054-65905073 None:intergenic 30.0%
!! GTGTTATTGACTTCTATTAG+GGG + chr1_3:65905079-65905098 Msa0134380:three_prime_UTR 30.0%
!! TGTTATTGACTTCTATTAGG+GGG + chr1_3:65905080-65905099 Msa0134380:three_prime_UTR 30.0%
TAAATCGTAGTTTCTCTTTG+AGG + chr1_3:65905145-65905164 Msa0134380:three_prime_UTR 30.0%
AGTAAATTATTCACTCCTGA+TGG + chr1_3:65905200-65905219 Msa0134380:three_prime_UTR 30.0%
GTAAATTATTCACTCCTGAT+GGG + chr1_3:65905201-65905220 Msa0134380:three_prime_UTR 30.0%
GTTGCGTATATAGAATGGAA+TGG - chr1_3:65903895-65903914 None:intergenic 35.0%
AGAAGGTTGCGTATATAGAA+TGG - chr1_3:65903900-65903919 None:intergenic 35.0%
! GGTAGATATAGCATTGAAGA+AGG - chr1_3:65903917-65903936 None:intergenic 35.0%
CAGAAGGGATGTTGTTAAAT+TGG - chr1_3:65904118-65904137 None:intergenic 35.0%
TTTACTACTATGCTCACCTT+TGG - chr1_3:65904463-65904482 None:intergenic 35.0%
! CACAAAGTTTTCGGATTTGA+TGG + chr1_3:65904569-65904588 Msa0134380:CDS 35.0%
!! TTTTCGGATTTGATGGCATT+TGG + chr1_3:65904576-65904595 Msa0134380:CDS 35.0%
!!! ATTGGTTTTGTAGCTGCTAT+GGG + chr1_3:65904639-65904658 Msa0134380:CDS 35.0%
TTTGATCAAATATCTGGTGG+TGG + chr1_3:65904690-65904709 Msa0134380:CDS 35.0%
ACACTAACACCTTGGAAAAA+TGG - chr1_3:65904768-65904787 None:intergenic 35.0%
! AGTGTTGAGTCTAAGTCAAA+AGG + chr1_3:65904783-65904802 Msa0134380:CDS 35.0%
GAATGGAAGAATTGCTATGT+TGG + chr1_3:65904833-65904852 Msa0134380:CDS 35.0%
GCCTTTACAGAGTATGTTAA+GGG + chr1_3:65904870-65904889 Msa0134380:CDS 35.0%
ACCCTTAACATACTCTGTAA+AGG - chr1_3:65904874-65904893 None:intergenic 35.0%
AGAAATCTATTACACAAGGG+AGG - chr1_3:65904898-65904917 None:intergenic 35.0%
TAGGAACACGATTAAGGTTT+AGG + chr1_3:65904919-65904938 Msa0134380:three_prime_UTR 35.0%
AGGAACACGATTAAGGTTTA+GGG + chr1_3:65904920-65904939 Msa0134380:three_prime_UTR 35.0%
ATTCATCAAATCATCCCATC+AGG - chr1_3:65905218-65905237 None:intergenic 35.0%
GTTGCGTATATAGAATGGAA+TGG - chr1_3:65903895-65903914 None:intergenic 35.0%
AGAAGGTTGCGTATATAGAA+TGG - chr1_3:65903900-65903919 None:intergenic 35.0%
! GGTAGATATAGCATTGAAGA+AGG - chr1_3:65903917-65903936 None:intergenic 35.0%
CAGAAGGGATGTTGTTAAAT+TGG - chr1_3:65904118-65904137 None:intergenic 35.0%
TTTACTACTATGCTCACCTT+TGG - chr1_3:65904463-65904482 None:intergenic 35.0%
! CACAAAGTTTTCGGATTTGA+TGG + chr1_3:65904569-65904588 Msa0134380:CDS 35.0%
!! TTTTCGGATTTGATGGCATT+TGG + chr1_3:65904576-65904595 Msa0134380:CDS 35.0%
!!! ATTGGTTTTGTAGCTGCTAT+GGG + chr1_3:65904639-65904658 Msa0134380:CDS 35.0%
TTTGATCAAATATCTGGTGG+TGG + chr1_3:65904690-65904709 Msa0134380:CDS 35.0%
ACACTAACACCTTGGAAAAA+TGG - chr1_3:65904768-65904787 None:intergenic 35.0%
! AGTGTTGAGTCTAAGTCAAA+AGG + chr1_3:65904783-65904802 Msa0134380:CDS 35.0%
GAATGGAAGAATTGCTATGT+TGG + chr1_3:65904833-65904852 Msa0134380:CDS 35.0%
GCCTTTACAGAGTATGTTAA+GGG + chr1_3:65904870-65904889 Msa0134380:CDS 35.0%
ACCCTTAACATACTCTGTAA+AGG - chr1_3:65904874-65904893 None:intergenic 35.0%
AGAAATCTATTACACAAGGG+AGG - chr1_3:65904898-65904917 None:intergenic 35.0%
TAGGAACACGATTAAGGTTT+AGG + chr1_3:65904919-65904938 Msa0134380:three_prime_UTR 35.0%
AGGAACACGATTAAGGTTTA+GGG + chr1_3:65904920-65904939 Msa0134380:three_prime_UTR 35.0%
ATTCATCAAATCATCCCATC+AGG - chr1_3:65905218-65905237 None:intergenic 35.0%
CTACCAACCTTAACCATCTA+AGG + chr1_3:65903932-65903951 Msa0134380:five_prime_UTR 40.0%
ACACCTTAGATGGTTAAGGT+TGG - chr1_3:65903938-65903957 None:intergenic 40.0%
CACTACACCTTAGATGGTTA+AGG - chr1_3:65903942-65903961 None:intergenic 40.0%
TCACTTCACTACACCTTAGA+TGG - chr1_3:65903948-65903967 None:intergenic 40.0%
AGCTAGGCATATACACAGAA+GGG - chr1_3:65904133-65904152 None:intergenic 40.0%
AAGCTAGGCATATACACAGA+AGG - chr1_3:65904134-65904153 None:intergenic 40.0%
TGTATATGCCTAGCTTCAGA+AGG + chr1_3:65904138-65904157 Msa0134380:CDS 40.0%
TTTGGTGAACGAGTATAGGT+TGG - chr1_3:65904445-65904464 None:intergenic 40.0%
AACCTATACTCGTTCACCAA+AGG + chr1_3:65904444-65904463 Msa0134380:CDS 40.0%
! GCAGATGAGCACAAAGTTTT+CGG + chr1_3:65904560-65904579 Msa0134380:intron 40.0%
!! AACCTTCCATTGATTCTCTC+AGG - chr1_3:65904612-65904631 None:intergenic 40.0%
TGAGAGAATCAATGGAAGGT+TGG + chr1_3:65904611-65904630 Msa0134380:CDS 40.0%
! AATGGAAGGTTGGCTATGAT+TGG + chr1_3:65904621-65904640 Msa0134380:CDS 40.0%
!!! GATTGGTTTTGTAGCTGCTA+TGG + chr1_3:65904638-65904657 Msa0134380:CDS 40.0%
!!! TTGGTTTTGTAGCTGCTATG+GGG + chr1_3:65904640-65904659 Msa0134380:CDS 40.0%
TAGACTCAACACTAACACCT+TGG - chr1_3:65904776-65904795 None:intergenic 40.0%
! ATTCCATAGTTCTGCATCTG+AGG - chr1_3:65904817-65904836 None:intergenic 40.0%
TCAGATGCAGAACTATGGAA+TGG + chr1_3:65904816-65904835 Msa0134380:CDS 40.0%
GGCCTTTACAGAGTATGTTA+AGG + chr1_3:65904869-65904888 Msa0134380:CDS 40.0%
! TCTATTAGGGGGCATGATTA+AGG + chr1_3:65905091-65905110 Msa0134380:three_prime_UTR 40.0%
CTACCAACCTTAACCATCTA+AGG + chr1_3:65903932-65903951 Msa0134380:five_prime_UTR 40.0%
ACACCTTAGATGGTTAAGGT+TGG - chr1_3:65903938-65903957 None:intergenic 40.0%
CACTACACCTTAGATGGTTA+AGG - chr1_3:65903942-65903961 None:intergenic 40.0%
TCACTTCACTACACCTTAGA+TGG - chr1_3:65903948-65903967 None:intergenic 40.0%
AGCTAGGCATATACACAGAA+GGG - chr1_3:65904133-65904152 None:intergenic 40.0%
AAGCTAGGCATATACACAGA+AGG - chr1_3:65904134-65904153 None:intergenic 40.0%
TGTATATGCCTAGCTTCAGA+AGG + chr1_3:65904138-65904157 Msa0134380:CDS 40.0%
TTTGGTGAACGAGTATAGGT+TGG - chr1_3:65904445-65904464 None:intergenic 40.0%
AACCTATACTCGTTCACCAA+AGG + chr1_3:65904444-65904463 Msa0134380:CDS 40.0%
! GCAGATGAGCACAAAGTTTT+CGG + chr1_3:65904560-65904579 Msa0134380:intron 40.0%
!! AACCTTCCATTGATTCTCTC+AGG - chr1_3:65904612-65904631 None:intergenic 40.0%
TGAGAGAATCAATGGAAGGT+TGG + chr1_3:65904611-65904630 Msa0134380:CDS 40.0%
! AATGGAAGGTTGGCTATGAT+TGG + chr1_3:65904621-65904640 Msa0134380:CDS 40.0%
!!! GATTGGTTTTGTAGCTGCTA+TGG + chr1_3:65904638-65904657 Msa0134380:CDS 40.0%
!!! TTGGTTTTGTAGCTGCTATG+GGG + chr1_3:65904640-65904659 Msa0134380:CDS 40.0%
TAGACTCAACACTAACACCT+TGG - chr1_3:65904776-65904795 None:intergenic 40.0%
! ATTCCATAGTTCTGCATCTG+AGG - chr1_3:65904817-65904836 None:intergenic 40.0%
TCAGATGCAGAACTATGGAA+TGG + chr1_3:65904816-65904835 Msa0134380:CDS 40.0%
GGCCTTTACAGAGTATGTTA+AGG + chr1_3:65904869-65904888 Msa0134380:CDS 40.0%
! TCTATTAGGGGGCATGATTA+AGG + chr1_3:65905091-65905110 Msa0134380:three_prime_UTR 40.0%
! AAGCATTGCGAGGGACATTA+TGG - chr1_3:65903871-65903890 None:intergenic 45.0%
!! TGGAATGGAAAGCATTGCGA+GGG - chr1_3:65903880-65903899 None:intergenic 45.0%
!! ATGGAATGGAAAGCATTGCG+AGG - chr1_3:65903881-65903900 None:intergenic 45.0%
!! CTAGCATTCCTTCTGAAGCT+AGG - chr1_3:65904149-65904168 None:intergenic 45.0%
! GGAATGCTAGCCTCAAAGTT+CGG + chr1_3:65904159-65904178 Msa0134380:CDS 45.0%
CGAAAACATTACCTCAGCCA+TGG - chr1_3:65904186-65904205 None:intergenic 45.0%
!! GTGCTGATGGTGGTGTAATT+GGG - chr1_3:65904399-65904418 None:intergenic 45.0%
!! GTATAGGTTGGTTGTGGTTG+TGG - chr1_3:65904433-65904452 None:intergenic 45.0%
!! GAACGAGTATAGGTTGGTTG+TGG - chr1_3:65904439-65904458 None:intergenic 45.0%
CACCTTTGGTGAACGAGTAT+AGG - chr1_3:65904449-65904468 None:intergenic 45.0%
! TCGGATTTGATGGCATTTGG+TGG + chr1_3:65904579-65904598 Msa0134380:CDS 45.0%
! CGGATTTGATGGCATTTGGT+GGG + chr1_3:65904580-65904599 Msa0134380:CDS 45.0%
CACCTGAGAGAATCAATGGA+AGG + chr1_3:65904607-65904626 Msa0134380:CDS 45.0%
!!! TGGTTTTGTAGCTGCTATGG+GGG + chr1_3:65904641-65904660 Msa0134380:CDS 45.0%
GTGGAGATAGCAAATGGACA+GGG + chr1_3:65904663-65904682 Msa0134380:CDS 45.0%
!! TATCTGGTGGTGGAATTCCA+TGG + chr1_3:65904700-65904719 Msa0134380:CDS 45.0%
TGGTGGAATTCCATGGTTCT+TGG + chr1_3:65904707-65904726 Msa0134380:CDS 45.0%
GGTGGAATTCCATGGTTCTT+GGG + chr1_3:65904708-65904727 Msa0134380:CDS 45.0%
GTGGAATTCCATGGTTCTTG+GGG + chr1_3:65904709-65904728 Msa0134380:CDS 45.0%
TGTCCTCAGATGCAGAACTA+TGG + chr1_3:65904811-65904830 Msa0134380:CDS 45.0%
! AAGCATTGCGAGGGACATTA+TGG - chr1_3:65903871-65903890 None:intergenic 45.0%
!! TGGAATGGAAAGCATTGCGA+GGG - chr1_3:65903880-65903899 None:intergenic 45.0%
!! ATGGAATGGAAAGCATTGCG+AGG - chr1_3:65903881-65903900 None:intergenic 45.0%
!! CTAGCATTCCTTCTGAAGCT+AGG - chr1_3:65904149-65904168 None:intergenic 45.0%
! GGAATGCTAGCCTCAAAGTT+CGG + chr1_3:65904159-65904178 Msa0134380:CDS 45.0%
CGAAAACATTACCTCAGCCA+TGG - chr1_3:65904186-65904205 None:intergenic 45.0%
!! GTGCTGATGGTGGTGTAATT+GGG - chr1_3:65904399-65904418 None:intergenic 45.0%
!! GTATAGGTTGGTTGTGGTTG+TGG - chr1_3:65904433-65904452 None:intergenic 45.0%
!! GAACGAGTATAGGTTGGTTG+TGG - chr1_3:65904439-65904458 None:intergenic 45.0%
CACCTTTGGTGAACGAGTAT+AGG - chr1_3:65904449-65904468 None:intergenic 45.0%
! TCGGATTTGATGGCATTTGG+TGG + chr1_3:65904579-65904598 Msa0134380:CDS 45.0%
! CGGATTTGATGGCATTTGGT+GGG + chr1_3:65904580-65904599 Msa0134380:CDS 45.0%
CACCTGAGAGAATCAATGGA+AGG + chr1_3:65904607-65904626 Msa0134380:CDS 45.0%
!!! TGGTTTTGTAGCTGCTATGG+GGG + chr1_3:65904641-65904660 Msa0134380:CDS 45.0%
GTGGAGATAGCAAATGGACA+GGG + chr1_3:65904663-65904682 Msa0134380:CDS 45.0%
!! TATCTGGTGGTGGAATTCCA+TGG + chr1_3:65904700-65904719 Msa0134380:CDS 45.0%
TGGTGGAATTCCATGGTTCT+TGG + chr1_3:65904707-65904726 Msa0134380:CDS 45.0%
GGTGGAATTCCATGGTTCTT+GGG + chr1_3:65904708-65904727 Msa0134380:CDS 45.0%
GTGGAATTCCATGGTTCTTG+GGG + chr1_3:65904709-65904728 Msa0134380:CDS 45.0%
TGTCCTCAGATGCAGAACTA+TGG + chr1_3:65904811-65904830 Msa0134380:CDS 45.0%
TGGTTAACTCTAGGCCTGCT+AGG - chr1_3:65904098-65904117 None:intergenic 50.0%
TAGCCTCAAAGTTCGGTCCA+TGG + chr1_3:65904166-65904185 Msa0134380:CDS 50.0%
AGGGCAGAAAGAGCAACCAA+AGG + chr1_3:65904363-65904382 Msa0134380:CDS 50.0%
ATTGGGTCTACAGGCACCTT+TGG - chr1_3:65904382-65904401 None:intergenic 50.0%
GGTGGTGTAATTGGGTCTAC+AGG - chr1_3:65904391-65904410 None:intergenic 50.0%
!! GGTGCTGATGGTGGTGTAAT+TGG - chr1_3:65904400-65904419 None:intergenic 50.0%
!! TAGGTTGGTTGTGGTTGTGG+TGG - chr1_3:65904430-65904449 None:intergenic 50.0%
!! CCATTGATTCTCTCAGGTGC+TGG - chr1_3:65904606-65904625 None:intergenic 50.0%
CCAGCACCTGAGAGAATCAA+TGG + chr1_3:65904603-65904622 Msa0134380:CDS 50.0%
! TTTTGTAGCTGCTATGGGGG+TGG + chr1_3:65904644-65904663 Msa0134380:CDS 50.0%
ATGGGGGTGGAGATAGCAAA+TGG + chr1_3:65904657-65904676 Msa0134380:CDS 50.0%
GGTGGAGATAGCAAATGGAC+AGG + chr1_3:65904662-65904681 Msa0134380:CDS 50.0%
ACACTTGTCCCCAAGAACCA+TGG - chr1_3:65904720-65904739 None:intergenic 50.0%
TGGTTAACTCTAGGCCTGCT+AGG - chr1_3:65904098-65904117 None:intergenic 50.0%
TAGCCTCAAAGTTCGGTCCA+TGG + chr1_3:65904166-65904185 Msa0134380:CDS 50.0%
AGGGCAGAAAGAGCAACCAA+AGG + chr1_3:65904363-65904382 Msa0134380:CDS 50.0%
ATTGGGTCTACAGGCACCTT+TGG - chr1_3:65904382-65904401 None:intergenic 50.0%
GGTGGTGTAATTGGGTCTAC+AGG - chr1_3:65904391-65904410 None:intergenic 50.0%
!! GGTGCTGATGGTGGTGTAAT+TGG - chr1_3:65904400-65904419 None:intergenic 50.0%
!! TAGGTTGGTTGTGGTTGTGG+TGG - chr1_3:65904430-65904449 None:intergenic 50.0%
!! CCATTGATTCTCTCAGGTGC+TGG - chr1_3:65904606-65904625 None:intergenic 50.0%
CCAGCACCTGAGAGAATCAA+TGG + chr1_3:65904603-65904622 Msa0134380:CDS 50.0%
! TTTTGTAGCTGCTATGGGGG+TGG + chr1_3:65904644-65904663 Msa0134380:CDS 50.0%
ATGGGGGTGGAGATAGCAAA+TGG + chr1_3:65904657-65904676 Msa0134380:CDS 50.0%
GGTGGAGATAGCAAATGGAC+AGG + chr1_3:65904662-65904681 Msa0134380:CDS 50.0%
ACACTTGTCCCCAAGAACCA+TGG - chr1_3:65904720-65904739 None:intergenic 50.0%
CCTGCTAGGAATGCTGGTCA+TGG - chr1_3:65904084-65904103 None:intergenic 55.0%
CCATGACCAGCATTCCTAGC+AGG + chr1_3:65904081-65904100 Msa0134380:CDS 55.0%
TCTAGGCCTGCTAGGAATGC+TGG - chr1_3:65904090-65904109 None:intergenic 55.0%
CAGCCATGGACCGAACTTTG+AGG - chr1_3:65904172-65904191 None:intergenic 55.0%
CAAAGTTCGGTCCATGGCTG+AGG + chr1_3:65904172-65904191 Msa0134380:CDS 55.0%
!! TGTGGTTGTGGTGGTGGAGT+TGG - chr1_3:65904421-65904440 None:intergenic 55.0%
GTTGGTTGTGGTTGTGGTGG+TGG - chr1_3:65904427-65904446 None:intergenic 55.0%
CCTGCTAGGAATGCTGGTCA+TGG - chr1_3:65904084-65904103 None:intergenic 55.0%
CCATGACCAGCATTCCTAGC+AGG + chr1_3:65904081-65904100 Msa0134380:CDS 55.0%
TCTAGGCCTGCTAGGAATGC+TGG - chr1_3:65904090-65904109 None:intergenic 55.0%
CAGCCATGGACCGAACTTTG+AGG - chr1_3:65904172-65904191 None:intergenic 55.0%
CAAAGTTCGGTCCATGGCTG+AGG + chr1_3:65904172-65904191 Msa0134380:CDS 55.0%
!! TGTGGTTGTGGTGGTGGAGT+TGG - chr1_3:65904421-65904440 None:intergenic 55.0%
GTTGGTTGTGGTTGTGGTGG+TGG - chr1_3:65904427-65904446 None:intergenic 55.0%
!! GGTGGAGTTGGTGCTGATGG+TGG - chr1_3:65904409-65904428 None:intergenic 60.0%
!! GGTGGTGGAGTTGGTGCTGA+TGG - chr1_3:65904412-65904431 None:intergenic 60.0%
!! GGTGGAGTTGGTGCTGATGG+TGG - chr1_3:65904409-65904428 None:intergenic 60.0%
!! GGTGGTGGAGTTGGTGCTGA+TGG - chr1_3:65904412-65904431 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 65903850 65905274 65903850 ID=Msa0134380;Name=Msa0134380
chr1_3 mRNA 65903850 65905274 65903850 ID=Msa0134380-mRNA-1;Parent=Msa0134380;Name=Msa0134380-mRNA-1;_AED=0.37;_eAED=0.37;_QI=194|1|1|1|1|1|3|366|199
chr1_3 exon 65903850 65904193 65903850 ID=Msa0134380-mRNA-1:exon:22436;Parent=Msa0134380-mRNA-1
chr1_3 exon 65904361 65904465 65904361 ID=Msa0134380-mRNA-1:exon:22437;Parent=Msa0134380-mRNA-1
chr1_3 exon 65904564 65905274 65904564 ID=Msa0134380-mRNA-1:exon:22438;Parent=Msa0134380-mRNA-1
chr1_3 five_prime_UTR 65903850 65904043 65903850 ID=Msa0134380-mRNA-1:five_prime_utr;Parent=Msa0134380-mRNA-1
chr1_3 CDS 65904044 65904193 65904044 ID=Msa0134380-mRNA-1:cds;Parent=Msa0134380-mRNA-1
chr1_3 CDS 65904361 65904465 65904361 ID=Msa0134380-mRNA-1:cds;Parent=Msa0134380-mRNA-1
chr1_3 CDS 65904564 65904908 65904564 ID=Msa0134380-mRNA-1:cds;Parent=Msa0134380-mRNA-1
chr1_3 three_prime_UTR 65904909 65905274 65904909 ID=Msa0134380-mRNA-1:three_prime_utr;Parent=Msa0134380-mRNA-1
Gene Sequence

>Msa0134380

ATGGCTGTTTCATCTTATCAATCTATCATGTCAAGCTCCATGACCAGCATTCCTAGCAGGCCTAGAGTTAACCAATTTAACAACATCCCTTCTGTGTATATGCCTAGCTTCAGAAGGAATGCTAGCCTCAAAGTTCGGTCCATGGCTGAGGAAGGGCAGAAAGAGCAACCAAAGGTGCCTGTAGACCCAATTACACCACCATCAGCACCAACTCCACCACCACAACCACAACCAACCTATACTCGTTCACCAAAGATGAGCACAAAGTTTTCGGATTTGATGGCATTTGGTGGGCCAGCACCTGAGAGAATCAATGGAAGGTTGGCTATGATTGGTTTTGTAGCTGCTATGGGGGTGGAGATAGCAAATGGACAGGGTTTGTTTGATCAAATATCTGGTGGTGGAATTCCATGGTTCTTGGGGACAAGTGTGTTGTTGTCACTTGCTTCTTTGATTCCATTTTTCCAAGGTGTTAGTGTTGAGTCTAAGTCAAAAGGTGTCATGTCCTCAGATGCAGAACTATGGAATGGAAGAATTGCTATGTTGGGTTTAATTGCTTTGGCCTTTACAGAGTATGTTAAGGGTACCTCCCTTGTGTAA

Protein sequence

>Msa0134380

MAVSSYQSIMSSSMTSIPSRPRVNQFNNIPSVYMPSFRRNASLKVRSMAEEGQKEQPKVPVDPITPPSAPTPPPQPQPTYTRSPKMSTKFSDLMAFGGPAPERINGRLAMIGFVAAMGVEIANGQGLFDQISGGGIPWFLGTSVLLSLASLIPFFQGVSVESKSKGVMSSDAELWNGRIAMLGLIALAFTEYVKGTSLV*