AlfalfaGEDB | Msa0134420

M. sativa cultivar zhongmu-4 / Msa0134420

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009409 GO:0009411 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009637 GO:0009639 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0010029 GO:0010030 GO:0010114 GO:0010117 GO:0010218 GO:0010224 GO:0010380 GO:0016020 GO:0019222 GO:0031323 GO:0031326 GO:0031976 GO:0031984 GO:0033554 GO:0034357 GO:0034605 GO:0034644 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051239 GO:0051240 GO:0051716 GO:0055035 GO:0055085 GO:0065007 GO:0070141 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0071484 GO:0071486 GO:0071489 GO:0071490 GO:0071491 GO:0071492 GO:0080167 GO:0090056 GO:0104004 GO:1900140 GO:1901401 GO:1901463 GO:2000026
PFAM: PF00504.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0134420	XP_013469751.1	95.699	186	6	2	1	184	1	186	2.77e-121	350

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0134420	sp\|P11432\|ELI_PEA	72.449	196	42	1	1	184	1	196	1.30e-94	276

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0134420	A0A072VP35	95.699	186	6	2	1	184	1	186	1.32e-121	350

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005160	Msa0134420	0.805068	1.595682e-49	-8.615850e-47
Msa0014970	Msa0134420	0.822218	2.663945e-53	-8.615850e-47
Msa0021710	Msa0134420	0.843413	1.422580e-58	-8.615850e-47
Msa0032450	Msa0134420	0.854228	1.415665e-61	-8.615850e-47
Msa0039920	Msa0134420	0.940238	3.284006e-100	-8.615850e-47
Msa0040090	Msa0134420	0.947458	6.469532e-106	-8.615850e-47
Msa0041780	Msa0134420	0.812701	3.712843e-51	-8.615850e-47
Msa0046050	Msa0134420	0.811555	6.602728e-51	-8.615850e-47
Msa0046700	Msa0134420	0.805653	1.203207e-49	-8.615850e-47
Msa0057740	Msa0134420	0.829106	6.197597e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0134420	MtrunA17_Chr1g0204721	95.699	186	6	2	1	184	1	186	2.55e-125	350
Msa0134420	MtrunA17_Chr1g0204691	92.899	169	11	1	17	184	14	182	2.32e-112	317
Msa0134420	MtrunA17_Chr1g0204671	81.111	180	19	1	20	184	21	200	1.63e-98	283
Msa0134420	MtrunA17_Chr1g0204521	79.775	178	23	1	20	184	21	198	4.27e-98	282
Msa0134420	MtrunA17_Chr1g0204681	80.203	197	26	1	1	184	1	197	6.33e-98	281

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0134420	AT3G22840.1	50.000	192	77	3	7	184	9	195	7.15e-58	180
Msa0134420	AT4G14690.1	50.521	192	74	4	11	184	5	193	2.71e-53	168

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Find 46 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTTCCATTGATTCTTTC+AGG	0.165068	1_3:-65919795	None:intergenic
AAGCTAGGCATATACATAGA+AGG	0.387722	1_3:-65919265	None:intergenic
AATGGAAGACTTGCTATGTT+GGG	0.502682	1_3:+65920020	Msa0134420:CDS
AATGGAAGGTTAGCCATGAT+TGG	0.409893	1_3:+65919807	Msa0134420:CDS
ACACTAACACCTTCAAATAA+TGG	0.346554	1_3:-65919951	None:intergenic
ACACTTGTATACAAGAACCA+TGG	0.618963	1_3:-65919903	None:intergenic
AGCTAGGCATATACATAGAA+GGG	0.567045	1_3:-65919264	None:intergenic
AGGGCAGAAAGAGCAACCAA+AGG	0.630670	1_3:+65919554	Msa0134420:CDS
AGTGTTGAATCTAAGTCAAA+AGG	0.480583	1_3:+65919969	Msa0134420:CDS
ATAAAACTCGACTTAAACAA+GGG	0.599421	1_3:-65920084	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGAAGGGATGTTGTTAAAT+TGG	-	chr1_3:65919252-65919271	None:intergenic	30.0%
TAGTTTGAAAGTTCGATCTA+TGG	+	chr1_3:65919300-65919319	Msa0134420:CDS	30.0%
TTACATGACTATACTCTTCT+TGG	-	chr1_3:65919665-65919684	None:intergenic	30.0%
ACACTAACACCTTCAAATAA+TGG	-	chr1_3:65919954-65919973	None:intergenic	30.0%
TAGAAGGGATGTTGTTAAAT+TGG	-	chr1_3:65919252-65919271	None:intergenic	30.0%
TAGTTTGAAAGTTCGATCTA+TGG	+	chr1_3:65919300-65919319	Msa0134420:CDS	30.0%
TTACATGACTATACTCTTCT+TGG	-	chr1_3:65919665-65919684	None:intergenic	30.0%
ACACTAACACCTTCAAATAA+TGG	-	chr1_3:65919954-65919973	None:intergenic	30.0%
AGCTAGGCATATACATAGAA+GGG	-	chr1_3:65919267-65919286	None:intergenic	35.0%
AAGCTAGGCATATACATAGA+AGG	-	chr1_3:65919268-65919287	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	65919178	65920094	65919178	ID=Msa0134420;Name=Msa0134420
chr1_3	mRNA	65919178	65920094	65919178	ID=Msa0134420-mRNA-1;Parent=Msa0134420;Name=Msa0134420-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0\|0\|0\|1\|1\|1\|3\|0\|184
chr1_3	exon	65919178	65919327	65919178	ID=Msa0134420-mRNA-1:exon:22448;Parent=Msa0134420-mRNA-1
chr1_3	exon	65919552	65919611	65919552	ID=Msa0134420-mRNA-1:exon:22449;Parent=Msa0134420-mRNA-1
chr1_3	exon	65919750	65920094	65919750	ID=Msa0134420-mRNA-1:exon:22450;Parent=Msa0134420-mRNA-1
chr1_3	CDS	65919178	65919327	65919178	ID=Msa0134420-mRNA-1:cds;Parent=Msa0134420-mRNA-1
chr1_3	CDS	65919552	65919611	65919552	ID=Msa0134420-mRNA-1:cds;Parent=Msa0134420-mRNA-1
chr1_3	CDS	65919750	65920094	65919750	ID=Msa0134420-mRNA-1:cds;Parent=Msa0134420-mRNA-1

Gene Sequence

>Msa0134420

ATGGCTGTTTCATCTTGTCAATCTATCATGTCAAGCTCCATGACCAGCATTTCAAGCAGGCCTAGAGTTAACCAATTTAACAACATCCCTTCTATGTATATGCCTAGCTTCAGAAGGAATGCTAGTTTGAAAGTTCGATCTATGGCTGAGGAAGGGCAGAAAGAGCAACCAAAGGTGACTCCTCAGCCTGCTTCTACTCGTTCACCAAAGATAAGCACAAAATTTTCGGATTTGATGGCATTTGGTGGGGCAGCGCCTGAAAGAATCAATGGAAGGTTAGCCATGATTGGTTTTGTATCTGCAATGGGGGTGGAATTAGCAAAAGGGCAGGGTTTGTTCGATCAAATATCTGGTGGTGGAATCCCATGGTTCTTGTATACAAGTGTGTTGTTGACAGTTGCTTCTTTGGTTCCATTATTTGAAGGTGTTAGTGTTGAATCTAAGTCAAAAGGTATCATGTCCTCAAATGCAGAGCTTTGGAATGGAAGACTTGCTATGTTGGGTTTGATTGCTTTGGCTGCTACAGAATATGTTAAGGGTACTGCCCTTGTTTAA

Protein sequence

>Msa0134420

MAVSSCQSIMSSSMTSISSRPRVNQFNNIPSMYMPSFRRNASLKVRSMAEEGQKEQPKVTPQPASTRSPKISTKFSDLMAFGGAAPERINGRLAMIGFVSAMGVELAKGQGLFDQISGGGIPWFLYTSVLLTVASLVPLFEGVSVESKSKGIMSSNAELWNGRLAMLGLIALAATEYVKGTALV*