Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184690 | sp|B6ZJZ9|PNC1_SOYBN | 69.182 | 318 | 88 | 3 | 1 | 310 | 1 | 316 | 1.19e-153 | 436 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184690 | G7IE57 | 96.573 | 321 | 2 | 2 | 1 | 312 | 1 | 321 | 0.0 | 623 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037110 | Msa0184690 | 0.801332 | 9.465488e-49 | -8.615850e-47 |
| Msa0042500 | Msa0184690 | 0.822157 | 2.752475e-53 | -8.615850e-47 |
| Msa0079320 | Msa0184690 | 0.800508 | 1.394437e-48 | -8.615850e-47 |
| Msa0079570 | Msa0184690 | 0.825306 | 5.037738e-54 | -8.615850e-47 |
| Msa0082340 | Msa0184690 | 0.800628 | 1.318278e-48 | -8.615850e-47 |
| Msa0084330 | Msa0184690 | 0.807463 | 4.993163e-50 | -8.615850e-47 |
| Msa0127240 | Msa0184690 | 0.811400 | 7.134859e-51 | -8.615850e-47 |
| Msa0164580 | Msa0184690 | 0.806519 | 7.910219e-50 | -8.615850e-47 |
| Msa0172290 | Msa0184690 | 0.808816 | 2.571706e-50 | -8.615850e-47 |
| Msa0184690 | Msa0186380 | 0.803833 | 2.886112e-49 | -8.615850e-47 |
| Msa0184690 | Msa0212290 | 0.801138 | 1.037132e-48 | -8.615850e-47 |
| Msa0184690 | Msa0285510 | 0.802216 | 6.232669e-49 | -8.615850e-47 |
| Msa0184690 | Msa0297320 | 0.802139 | 6.463417e-49 | -8.615850e-47 |
| Msa0184690 | Msa0315720 | 0.800045 | 1.732722e-48 | -8.615850e-47 |
| Msa0184690 | Msa0327870 | 0.803298 | 3.726696e-49 | -8.615850e-47 |
| Msa0184690 | Msa0365350 | 0.801191 | 1.011549e-48 | -8.615850e-47 |
| Msa0184690 | Msa0385870 | 0.812648 | 3.813775e-51 | -8.615850e-47 |
| Msa0184690 | Msa0431560 | 0.800945 | 1.135596e-48 | -8.615850e-47 |
| Msa0184690 | Msa0515420 | 0.803366 | 3.608189e-49 | -8.615850e-47 |
| Msa0184690 | Msa0523400 | 0.802779 | 4.771040e-49 | -8.615850e-47 |
| Msa0184690 | Msa0619450 | 0.800346 | 1.504853e-48 | -8.615850e-47 |
| Msa0184690 | Msa0619460 | 0.806332 | 8.659962e-50 | -8.615850e-47 |
| Msa0184690 | Msa0688810 | 0.967976 | 5.030629e-128 | -8.615850e-47 |
| Msa0184690 | Msa0708450 | 0.801226 | 9.948566e-49 | -8.615850e-47 |
| Msa0184690 | Msa0719160 | 0.802637 | 5.104456e-49 | -8.615850e-47 |
| Msa0184690 | Msa0768240 | 0.804626 | 1.974035e-49 | -8.615850e-47 |
| Msa0184690 | Msa0880370 | 0.806531 | 7.861871e-50 | -8.615850e-47 |
| Msa0184690 | Msa0932040 | 0.805310 | 1.419943e-49 | -8.615850e-47 |
| Msa0184690 | Msa0970160 | 0.800905 | 1.157514e-48 | -8.615850e-47 |
| Msa0184690 | Msa1031620 | 0.801557 | 8.514192e-49 | -8.615850e-47 |
| Msa0184690 | Msa1038040 | 0.811782 | 5.893845e-51 | -8.615850e-47 |
| Msa0184690 | Msa1118890 | 0.801613 | 8.289721e-49 | -8.615850e-47 |
| Msa0184690 | Msa1127530 | 0.800756 | 1.241074e-48 | -8.615850e-47 |
| Msa0184690 | Msa1136770 | 0.813391 | 2.620643e-51 | -8.615850e-47 |
| Msa0184690 | Msa1165330 | 0.809453 | 1.878557e-50 | -8.615850e-47 |
| Msa0184690 | Msa1223600 | 0.811261 | 7.647804e-51 | -8.615850e-47 |
| Msa0184690 | Msa1229880 | 0.812810 | 3.515321e-51 | -8.615850e-47 |
| Msa0184690 | Msa1263460 | 0.806846 | 6.746217e-50 | -8.615850e-47 |
| Msa0184690 | Msa1310620 | 0.806748 | 7.075556e-50 | -8.615850e-47 |
| Msa0184690 | Msa1317340 | 0.802546 | 5.329901e-49 | -8.615850e-47 |
| Msa0184690 | Msa1356500 | 0.803887 | 2.813535e-49 | -8.615850e-47 |
| Msa0184690 | Msa1357090 | 0.808076 | 3.698469e-50 | -8.615850e-47 |
| Msa0184690 | Msa1360070 | 0.803010 | 4.275603e-49 | -8.615850e-47 |
| Msa0184690 | Msa1374610 | 0.806720 | 7.172338e-50 | -8.615850e-47 |
| Msa0184690 | Msa1387650 | 0.805447 | 1.329319e-49 | -8.615850e-47 |
| Msa0184690 | Msa1398150 | 0.805467 | 1.316427e-49 | -8.615850e-47 |
| Msa0184690 | Msa1403820 | 0.804418 | 2.181340e-49 | -8.615850e-47 |
| Msa0184690 | Msa1414000 | 0.807507 | 4.886828e-50 | -8.615850e-47 |
| Msa0184690 | Msa1426690 | 0.802527 | 5.377494e-49 | -8.615850e-47 |
| Msa0184690 | Msa1428050 | 0.807578 | 4.721214e-50 | -8.615850e-47 |
| Msa0184690 | Msa1449510 | 0.812555 | 3.997792e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184690 | MtrunA17_Chr1g0205941 | 96.573 | 321 | 2 | 2 | 1 | 312 | 1 | 321 | 0.0 | 623 |
| Msa0184690 | MtrunA17_Chr5g0416661 | 68.065 | 310 | 89 | 3 | 1 | 302 | 1 | 308 | 3.55e-149 | 421 |
| Msa0184690 | MtrunA17_Chr7g0231821 | 67.050 | 261 | 76 | 3 | 1 | 253 | 1 | 259 | 2.36e-120 | 346 |
| Msa0184690 | MtrunA17_Chr5g0436571 | 26.266 | 316 | 176 | 7 | 24 | 295 | 21 | 323 | 4.41e-23 | 97.4 |
| Msa0184690 | MtrunA17_Chr8g0385571 | 29.097 | 299 | 165 | 14 | 13 | 290 | 229 | 501 | 3.54e-17 | 82.0 |
| Msa0184690 | MtrunA17_Chr8g0372531 | 23.158 | 285 | 190 | 8 | 25 | 289 | 28 | 303 | 7.96e-16 | 76.6 |
| Msa0184690 | MtrunA17_Chr1g0163521 | 28.485 | 165 | 108 | 5 | 131 | 294 | 203 | 358 | 4.40e-14 | 72.0 |
| Msa0184690 | MtrunA17_Chr3g0131501 | 26.014 | 296 | 178 | 12 | 13 | 290 | 207 | 479 | 1.32e-13 | 71.2 |
| Msa0184690 | MtrunA17_Chr7g0252401 | 27.181 | 298 | 169 | 15 | 13 | 290 | 209 | 478 | 4.33e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0184690 | AT3G05290.1 | 68.932 | 309 | 86 | 3 | 1 | 300 | 1 | 308 | 5.32e-153 | 431 |
| Msa0184690 | AT5G27520.1 | 68.269 | 312 | 87 | 4 | 1 | 302 | 3 | 312 | 6.52e-150 | 424 |
| Msa0184690 | AT2G39970.1 | 23.885 | 314 | 184 | 7 | 26 | 295 | 23 | 325 | 7.05e-22 | 94.4 |
| Msa0184690 | AT5G66380.1 | 22.742 | 299 | 203 | 7 | 10 | 289 | 9 | 298 | 3.61e-16 | 78.2 |
| Msa0184690 | AT5G07320.1 | 27.178 | 287 | 164 | 14 | 20 | 290 | 218 | 475 | 1.79e-11 | 65.1 |
Find 68 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCAAGATGCTTTCAATT+TGG | 0.135005 | 1_4:+74257942 | None:intergenic |
| CTACTTTAAGAGACTATATT+TGG | 0.166458 | 1_4:-74259412 | Msa0184690:CDS |
| CTGGAGCACTCTATACTATT+TGG | 0.239300 | 1_4:-74258122 | Msa0184690:CDS |
| ATTCAAGATGCTTTCAATTT+GGG | 0.243894 | 1_4:+74257943 | None:intergenic |
| TTGAACTTCAGCTTGATATT+TGG | 0.253052 | 1_4:+74260464 | None:intergenic |
| TCGTCGTTTATTTATTTCTA+TGG | 0.253599 | 1_4:-74259441 | Msa0184690:CDS |
| AGGATGCAGACAAGTGAATT+TGG | 0.266292 | 1_4:-74258860 | Msa0184690:CDS |
| AACAACAAACCCATCTATTC+AGG | 0.272652 | 1_4:-74258756 | Msa0184690:intron |
| CCTTGAGGATGCTGTATCTA+AGG | 0.273262 | 1_4:+74258880 | None:intergenic |
| TCATTGTCTGAAGCTACTTC+TGG | 0.274841 | 1_4:-74260543 | Msa0184690:CDS |
| CTTTCATTGTACCAAGGCTT+GGG | 0.297703 | 1_4:-74259489 | Msa0184690:CDS |
| GAGAAAGCAGAAAGTGATTC+CGG | 0.301391 | 1_4:+74258546 | None:intergenic |
| AAGAGTGATACCTGAATAGA+TGG | 0.321223 | 1_4:+74258746 | None:intergenic |
| TGTTGTTAAAAGAATAGATA+TGG | 0.354667 | 1_4:+74258772 | None:intergenic |
| GAAGCTACTTCTGGGGCTAT+TGG | 0.386853 | 1_4:-74260534 | Msa0184690:CDS |
| GCTTGACATACCCAGCTATC+AGG | 0.393298 | 1_4:-74258482 | Msa0184690:intron |
| TAGGTGTAAAGTCACTATTC+AGG | 0.395494 | 1_4:-74258205 | Msa0184690:CDS |
| TTGATAATCCACCTGATAGC+TGG | 0.413991 | 1_4:+74258471 | None:intergenic |
| TGGAAAAGAGAAGGCCTCTT+GGG | 0.439214 | 1_4:-74258102 | Msa0184690:CDS |
| GCTTTCATTGTACCAAGGCT+TGG | 0.441061 | 1_4:-74259490 | Msa0184690:CDS |
| CATTGTCTGAAGCTACTTCT+GGG | 0.446171 | 1_4:-74260542 | Msa0184690:CDS |
| TGGATTCTGATGCTCATCAT+TGG | 0.448309 | 1_4:-74257988 | Msa0184690:CDS |
| TTGATTGCCGCTACTATGTC+CGG | 0.467353 | 1_4:-74259351 | Msa0184690:CDS |
| AGAAAGCAGAAAGTGATTCC+GGG | 0.471336 | 1_4:+74258547 | None:intergenic |
| TTGGAAAAGAGAAGGCCTCT+TGG | 0.475034 | 1_4:-74258103 | Msa0184690:CDS |
| AAGGCGCAGAGGACAATCTC+TGG | 0.476185 | 1_4:-74258141 | Msa0184690:CDS |
| GCTGAAACACAGACTACTAA+AGG | 0.477004 | 1_4:-74258604 | Msa0184690:CDS |
| ATAAATAAACGACGAAATGA+AGG | 0.484849 | 1_4:+74259449 | None:intergenic |
| ACCTGGAGTGATGCATTTGA+TGG | 0.490024 | 1_4:-74258800 | Msa0184690:CDS |
| CAGCTCTGCATTACTTCTGA+TGG | 0.493278 | 1_4:-74258037 | Msa0184690:CDS |
| AGACCTTATCAGAGGGTACC+TGG | 0.496284 | 1_4:-74258817 | Msa0184690:CDS |
| ACTCCAGGTACCCTCTGATA+AGG | 0.497971 | 1_4:+74258814 | None:intergenic |
| TTGGAAAATCCAAGGGACTC+TGG | 0.499445 | 1_4:-74258841 | Msa0184690:CDS |
| CTGAAACACAGACTACTAAA+GGG | 0.499748 | 1_4:-74258603 | Msa0184690:CDS |
| GGAAGCAATTTCTAAACGTC+AGG | 0.508035 | 1_4:-74259514 | Msa0184690:CDS |
| TAAGGTCTGCCAGAGTCCCT+TGG | 0.511250 | 1_4:+74258832 | None:intergenic |
| GAGTACAGAAGCTGAAAAGA+AGG | 0.511723 | 1_4:-74258160 | Msa0184690:CDS |
| CCAGCCATCAAAGAAAATAC+AGG | 0.513015 | 1_4:-74260440 | Msa0184690:intron |
| ACAAGACGGTGGTGCTAACA+AGG | 0.523486 | 1_4:+74260508 | None:intergenic |
| TTCCGGGGATGACTTTGCAT+CGG | 0.531292 | 1_4:+74258563 | None:intergenic |
| TGCATTACTTCTGATGGTAA+AGG | 0.540385 | 1_4:-74258031 | Msa0184690:CDS |
| TAAACGACGAAATGAAGGAT+TGG | 0.543647 | 1_4:+74259454 | None:intergenic |
| TTCAAGATGCTTTCAATTTG+GGG | 0.544526 | 1_4:+74257944 | None:intergenic |
| CAAGATGCTTTCAATTTGGG+GGG | 0.545334 | 1_4:+74257946 | None:intergenic |
| CTTGAGGATGCTGTATCTAA+GGG | 0.556289 | 1_4:+74258881 | None:intergenic |
| AAAAGTGGAAACAAGAACAT+TGG | 0.557206 | 1_4:-74259387 | Msa0184690:CDS |
| TTCACTTGTCTGCATCCTTG+AGG | 0.559298 | 1_4:+74258865 | None:intergenic |
| AAGTGAATTTGGAAAATCCA+AGG | 0.561327 | 1_4:-74258849 | Msa0184690:CDS |
| AACCGATGCAAAGTCATCCC+CGG | 0.568341 | 1_4:-74258565 | Msa0184690:CDS |
| ACCATCAAATGCATCACTCC+AGG | 0.576816 | 1_4:+74258799 | None:intergenic |
| TGATAATCCACCTGATAGCT+GGG | 0.581837 | 1_4:+74258472 | None:intergenic |
| TATACTATTTGGAAAAGAGA+AGG | 0.590261 | 1_4:-74258111 | Msa0184690:CDS |
| TTTCATTGTACCAAGGCTTG+GGG | 0.595728 | 1_4:-74259488 | Msa0184690:CDS |
| TCAAGATGCTTTCAATTTGG+GGG | 0.597677 | 1_4:+74257945 | None:intergenic |
| CCTTAGATACAGCATCCTCA+AGG | 0.614597 | 1_4:-74258880 | Msa0184690:CDS |
| AGTGAATTTGGAAAATCCAA+GGG | 0.635743 | 1_4:-74258848 | Msa0184690:CDS |
| AGAAGATCACAAAGTCGACA+TGG | 0.636206 | 1_4:-74258008 | Msa0184690:CDS |
| CAGGTGCTTTCATTGTACCA+AGG | 0.638706 | 1_4:-74259495 | Msa0184690:CDS |
| CTCTGGCAGACCTTATCAGA+GGG | 0.640935 | 1_4:-74258824 | Msa0184690:CDS |
| AAGCTGAAAAGAAGGCGCAG+AGG | 0.642022 | 1_4:-74258152 | Msa0184690:CDS |
| GAAAGCAGAAAGTGATTCCG+GGG | 0.652721 | 1_4:+74258548 | None:intergenic |
| AGAGTGATACCTGAATAGAT+GGG | 0.654045 | 1_4:+74258747 | None:intergenic |
| ACTCTGGCAGACCTTATCAG+AGG | 0.672915 | 1_4:-74258825 | Msa0184690:CDS |
| ATTGTCTGAAGCTACTTCTG+GGG | 0.678769 | 1_4:-74260541 | Msa0184690:CDS |
| AGTATCAAGTGGATACAAGA+CGG | 0.683516 | 1_4:+74260494 | None:intergenic |
| CAAGACGGTGGTGCTAACAA+GGG | 0.715250 | 1_4:+74260509 | None:intergenic |
| ACAGACGCCGGACATAGTAG+CGG | 0.747106 | 1_4:+74259344 | None:intergenic |
| ATCAAGTGGATACAAGACGG+TGG | 0.749245 | 1_4:+74260497 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATTCATGAAACAATTT+AGG | - | chr1_4:74258130-74258149 | Msa0184690:CDS | 15.0% |
| !!! | TTTATCATATTGTTTTATTG+TGG | - | chr1_4:74258897-74258916 | Msa0184690:intron | 15.0% |
| !!! | CTTAATTTCAAGTTAATTTA+GGG | + | chr1_4:74259300-74259319 | None:intergenic | 15.0% |
| !!! | ACTTAATTTCAAGTTAATTT+AGG | + | chr1_4:74259301-74259320 | None:intergenic | 15.0% |
| !! | TTGAAATTAAGTTTATCAAA+GGG | - | chr1_4:74259309-74259328 | Msa0184690:intron | 15.0% |
| !!! | TAATTGAAAAGTACAATATT+TGG | - | chr1_4:74259358-74259377 | Msa0184690:CDS | 15.0% |
| !! | AATCTAGAGATAAATAATTT+AGG | + | chr1_4:74260061-74260080 | None:intergenic | 15.0% |
| !!! | TTTTGAATTTTACTATTAAC+TGG | + | chr1_4:74260133-74260152 | None:intergenic | 15.0% |
| !! | AGTTAATAGTAAAATTCAAA+AGG | - | chr1_4:74260132-74260151 | Msa0184690:intron | 15.0% |
| !! | TAATTAGCCAATAATCAATT+TGG | + | chr1_4:74258112-74258131 | None:intergenic | 20.0% |
| !!! | ATTTTTTACCAAATACAAAC+AGG | + | chr1_4:74258182-74258201 | None:intergenic | 20.0% |
| !! | TGTAGTTTATGAAAAAAAAC+AGG | - | chr1_4:74258523-74258542 | Msa0184690:CDS | 20.0% |
| !!! | TTTGAAGATATAATTTGTGT+TGG | - | chr1_4:74258547-74258566 | Msa0184690:CDS | 20.0% |
| !! | CAAAAGAAAACTTGTAATAT+TGG | + | chr1_4:74258875-74258894 | None:intergenic | 20.0% |
| !! | CTTGAAATTAAGTTTATCAA+AGG | - | chr1_4:74259308-74259327 | Msa0184690:intron | 20.0% |
| !! | TGTTGTTAAAAGAATAGATA+TGG | + | chr1_4:74259737-74259756 | None:intergenic | 20.0% |
| !!! | TGTGTTAATATACAGATTTT+GGG | - | chr1_4:74260088-74260107 | Msa0184690:intron | 20.0% |
| !! | ATAACCTGTATTTTCTTTGA+TGG | + | chr1_4:74258073-74258092 | None:intergenic | 25.0% |
| !!! | ACAGGTTATTTTCCTTTTAT+TGG | - | chr1_4:74258084-74258103 | Msa0184690:CDS | 25.0% |
| !!! | CAGGTTATTTTCCTTTTATT+GGG | - | chr1_4:74258085-74258104 | Msa0184690:CDS | 25.0% |
| !! | AGGAAAACAAATGATAATGT+CGG | - | chr1_4:74258274-74258293 | Msa0184690:intron | 25.0% |
| !! | CTTTAAGAACATCTTGTATT+TGG | - | chr1_4:74258308-74258327 | Msa0184690:intron | 25.0% |
| ! | CAAAAATAAGCCAATACAAA+CGG | - | chr1_4:74258631-74258650 | Msa0184690:intron | 25.0% |
| !! | ACGAAAACATTTTACAGTTT+AGG | - | chr1_4:74258709-74258728 | Msa0184690:intron | 25.0% |
| ! | CTACAATTAAAGAGAAAATG+TGG | + | chr1_4:74258749-74258768 | None:intergenic | 25.0% |
| ! | TGAATGTTATCATTACCATT+TGG | + | chr1_4:74258847-74258866 | None:intergenic | 25.0% |
| !! | GAGAATTTCTGATGTTTTAT+GGG | - | chr1_4:74258971-74258990 | Msa0184690:intron | 25.0% |
| ! | ATAAATAAACGACGAAATGA+AGG | + | chr1_4:74259060-74259079 | None:intergenic | 25.0% |
| !!! | TCGTCGTTTATTTATTTCTA+TGG | - | chr1_4:74259065-74259084 | Msa0184690:intron | 25.0% |
| !! | CTACTTTAAGAGACTATATT+TGG | - | chr1_4:74259094-74259113 | Msa0184690:intron | 25.0% |
| ! | AGACTATATTTGGAAAAAAG+TGG | - | chr1_4:74259104-74259123 | Msa0184690:intron | 25.0% |
| ! | TGACATACTTATTTGTGATA+TGG | - | chr1_4:74259245-74259264 | Msa0184690:intron | 25.0% |
| ! | AATCTGCAAAGAAAACAAAT+TGG | - | chr1_4:74259516-74259535 | Msa0184690:CDS | 25.0% |
| ! | AGAATCAATTATTCCAGATT+AGG | - | chr1_4:74259813-74259832 | Msa0184690:intron | 25.0% |
| !! | CTGTGTTAATATACAGATTT+TGG | - | chr1_4:74260087-74260106 | Msa0184690:intron | 25.0% |
| ! | TTTACTATTAACTGGAATCA+TGG | + | chr1_4:74260125-74260144 | None:intergenic | 25.0% |
| !!! | TAAATTTTTTCACAGATCTG+TGG | - | chr1_4:74260172-74260191 | Msa0184690:intron | 25.0% |
| !!! | AGATGTTTTGAATTTCCAAT+AGG | - | chr1_4:74260282-74260301 | Msa0184690:intron | 25.0% |
| ! | TATACTATTTGGAAAAGAGA+AGG | - | chr1_4:74260395-74260414 | Msa0184690:intron | 25.0% |
| !!! | TTGGTTTTACAAGTATCAAG+TGG | + | chr1_4:74258026-74258045 | None:intergenic | 30.0% |
| TTGAACTTCAGCTTGATATT+TGG | + | chr1_4:74258045-74258064 | None:intergenic | 30.0% | |
| ATCAATTTGGACCCAATAAA+AGG | + | chr1_4:74258099-74258118 | None:intergenic | 30.0% | |
| ATTGGGTCCAAATTGATTAT+TGG | - | chr1_4:74258102-74258121 | Msa0184690:CDS | 30.0% | |
| ! | ATTTAGGTTAAGTGTGTGTT+TGG | - | chr1_4:74258146-74258165 | Msa0184690:CDS | 30.0% |
| AGAACATCTTGTATTTGGAT+TGG | - | chr1_4:74258313-74258332 | Msa0184690:intron | 30.0% | |
| CTTATCACAATAACTACTCT+AGG | - | chr1_4:74258404-74258423 | Msa0184690:intron | 30.0% | |
| ! | AATGTTTTCGTAAACTATCC+TGG | + | chr1_4:74258700-74258719 | None:intergenic | 30.0% |
| TTATTGTGGCAAGATTAACA+AGG | - | chr1_4:74258911-74258930 | Msa0184690:intron | 30.0% | |
| AATTCTCCTACATAAGATAG+AGG | + | chr1_4:74258958-74258977 | None:intergenic | 30.0% | |
| ! | GGAGAATTTCTGATGTTTTA+TGG | - | chr1_4:74258970-74258989 | Msa0184690:intron | 30.0% |
| AAAAGTGGAAACAAGAACAT+TGG | - | chr1_4:74259119-74259138 | Msa0184690:intron | 30.0% | |
| CTGTACAATACTAATAACAC+AGG | - | chr1_4:74259181-74259200 | Msa0184690:intron | 30.0% | |
| TCAATTAATGTCATGTTTGC+AGG | + | chr1_4:74259345-74259364 | None:intergenic | 30.0% | |
| AAGTGAATTTGGAAAATCCA+AGG | - | chr1_4:74259657-74259676 | Msa0184690:intron | 30.0% | |
| AGTGAATTTGGAAAATCCAA+GGG | - | chr1_4:74259658-74259677 | Msa0184690:intron | 30.0% | |
| TCATATAGTGTAACCTAATC+TGG | + | chr1_4:74259829-74259848 | None:intergenic | 30.0% | |
| AATAGTGACTTTACACCTAT+TGG | + | chr1_4:74260300-74260319 | None:intergenic | 30.0% | |
| AGTATCAAGTGGATACAAGA+CGG | + | chr1_4:74258015-74258034 | None:intergenic | 35.0% | |
| TAGAGACTCCTGTTTGTATT+TGG | - | chr1_4:74258171-74258190 | Msa0184690:CDS | 35.0% | |
| ! | CAAATGATAATGTCGGTGTT+TGG | - | chr1_4:74258281-74258300 | Msa0184690:intron | 35.0% |
| TGACATACATCCGTTTGTAT+TGG | + | chr1_4:74258644-74258663 | None:intergenic | 35.0% | |
| CTTATCACAATAACTACTCC+AGG | - | chr1_4:74258679-74258698 | Msa0184690:intron | 35.0% | |
| GTTGTTCCTCTATCTTATGT+AGG | - | chr1_4:74258949-74258968 | Msa0184690:intron | 35.0% | |
| TAAACGACGAAATGAAGGAT+TGG | + | chr1_4:74259055-74259074 | None:intergenic | 35.0% | |
| TATTAGTATTGTACAGACGC+CGG | + | chr1_4:74259177-74259196 | None:intergenic | 35.0% | |
| TTAATGTCATGTTTGCAGGA+CGG | + | chr1_4:74259341-74259360 | None:intergenic | 35.0% | |
| ATCCTTGTCTAAAAAGAACG+CGG | - | chr1_4:74259457-74259476 | Msa0184690:CDS | 35.0% | |
| CAGCAAGGAAATAATGAGTT+TGG | + | chr1_4:74259566-74259585 | None:intergenic | 35.0% | |
| !! | CTCATTATTTCCTTGCTGTT+AGG | - | chr1_4:74259568-74259587 | Msa0184690:intron | 35.0% |
| AACAACAAACCCATCTATTC+AGG | - | chr1_4:74259750-74259769 | Msa0184690:intron | 35.0% | |
| AGAGTGATACCTGAATAGAT+GGG | + | chr1_4:74259762-74259781 | None:intergenic | 35.0% | |
| AAGAGTGATACCTGAATAGA+TGG | + | chr1_4:74259763-74259782 | None:intergenic | 35.0% | |
| CTGAAACACAGACTACTAAA+GGG | - | chr1_4:74259903-74259922 | Msa0184690:intron | 35.0% | |
| !! | TGCTTTCTCTGCTTTTATGT+TGG | - | chr1_4:74259974-74259993 | Msa0184690:intron | 35.0% |
| !! | GCTTTCTCTGCTTTTATGTT+GGG | - | chr1_4:74259975-74259994 | Msa0184690:intron | 35.0% |
| AAACATCTTTCATCAGCATG+TGG | + | chr1_4:74260270-74260289 | None:intergenic | 35.0% | |
| TAGGTGTAAAGTCACTATTC+AGG | - | chr1_4:74260301-74260320 | Msa0184690:intron | 35.0% | |
| ATCCATTGAAAAATCCCAAG+AGG | + | chr1_4:74260421-74260440 | None:intergenic | 35.0% | |
| TGCATTACTTCTGATGGTAA+AGG | - | chr1_4:74260475-74260494 | Msa0184690:CDS | 35.0% | |
| TCAAGATGCTTTCAATTTGG+GGG | + | chr1_4:74260564-74260583 | None:intergenic | 35.0% | |
| ! | TCATTGTCTGAAGCTACTTC+TGG | - | chr1_4:74257963-74257982 | Msa0184690:CDS | 40.0% |
| ! | CATTGTCTGAAGCTACTTCT+GGG | - | chr1_4:74257964-74257983 | Msa0184690:CDS | 40.0% |
| ! | ATTGTCTGAAGCTACTTCTG+GGG | - | chr1_4:74257965-74257984 | Msa0184690:CDS | 40.0% |
| !! | CCTGTATTTTCTTTGATGGC+TGG | + | chr1_4:74258069-74258088 | None:intergenic | 40.0% |
| CCAGCCATCAAAGAAAATAC+AGG | - | chr1_4:74258066-74258085 | Msa0184690:CDS | 40.0% | |
| GGAAGCAATTTCTAAACGTC+AGG | - | chr1_4:74258992-74259011 | Msa0184690:intron | 40.0% | |
| CTTTCATTGTACCAAGGCTT+GGG | - | chr1_4:74259017-74259036 | Msa0184690:intron | 40.0% | |
| TTTCATTGTACCAAGGCTTG+GGG | - | chr1_4:74259018-74259037 | Msa0184690:intron | 40.0% | |
| ACTCGATCTTTAGCAGAACT+AGG | - | chr1_4:74259403-74259422 | Msa0184690:CDS | 40.0% | |
| ! | AACCGCGTTCTTTTTAGACA+AGG | + | chr1_4:74259462-74259481 | None:intergenic | 40.0% |
| AGATTATGCACCTAACAGCA+AGG | + | chr1_4:74259581-74259600 | None:intergenic | 40.0% | |
| CTTGAGGATGCTGTATCTAA+GGG | + | chr1_4:74259628-74259647 | None:intergenic | 40.0% | |
| AGGATGCAGACAAGTGAATT+TGG | - | chr1_4:74259646-74259665 | Msa0184690:intron | 40.0% | |
| GATCGAATGCAGTATACTGT+TGG | + | chr1_4:74259881-74259900 | None:intergenic | 40.0% | |
| GCTGAAACACAGACTACTAA+AGG | - | chr1_4:74259902-74259921 | Msa0184690:intron | 40.0% | |
| AGAAAGCAGAAAGTGATTCC+GGG | + | chr1_4:74259962-74259981 | None:intergenic | 40.0% | |
| GAGAAAGCAGAAAGTGATTC+CGG | + | chr1_4:74259963-74259982 | None:intergenic | 40.0% | |
| TGATAATCCACCTGATAGCT+GGG | + | chr1_4:74260037-74260056 | None:intergenic | 40.0% | |
| ! | TTGATAATCCACCTGATAGC+TGG | + | chr1_4:74260038-74260057 | None:intergenic | 40.0% |
| TGGTTTCTGCAGATGTATCT+TGG | - | chr1_4:74260192-74260211 | Msa0184690:intron | 40.0% | |
| GGTTTCTGCAGATGTATCTT+GGG | - | chr1_4:74260193-74260212 | Msa0184690:intron | 40.0% | |
| GAGTACAGAAGCTGAAAAGA+AGG | - | chr1_4:74260346-74260365 | Msa0184690:intron | 40.0% | |
| ! | CTGGAGCACTCTATACTATT+TGG | - | chr1_4:74260384-74260403 | Msa0184690:intron | 40.0% |
| !!! | GGGATTTTTCAATGGATTGC+AGG | - | chr1_4:74260424-74260443 | Msa0184690:intron | 40.0% |
| AGAAGATCACAAAGTCGACA+TGG | - | chr1_4:74260498-74260517 | Msa0184690:CDS | 40.0% | |
| TGGATTCTGATGCTCATCAT+TGG | - | chr1_4:74260518-74260537 | Msa0184690:CDS | 40.0% | |
| CAAGATGCTTTCAATTTGGG+GGG | + | chr1_4:74260563-74260582 | None:intergenic | 40.0% | |
| ATCAAGTGGATACAAGACGG+TGG | + | chr1_4:74258012-74258031 | None:intergenic | 45.0% | |
| !! | CACTCTGAAGTGTTGTTCAG+TGG | - | chr1_4:74258251-74258270 | Msa0184690:intron | 45.0% |
| !! | TCTGAAGTGTTGTTCAGTGG+AGG | - | chr1_4:74258254-74258273 | Msa0184690:intron | 45.0% |
| CAGGTGCTTTCATTGTACCA+AGG | - | chr1_4:74259011-74259030 | Msa0184690:intron | 45.0% | |
| GCTTTCATTGTACCAAGGCT+TGG | - | chr1_4:74259016-74259035 | Msa0184690:intron | 45.0% | |
| !!! | CATTTTTTGTCCCCAAGCCT+TGG | + | chr1_4:74259031-74259050 | None:intergenic | 45.0% |
| TTGATTGCCGCTACTATGTC+CGG | - | chr1_4:74259155-74259174 | Msa0184690:intron | 45.0% | |
| CCTTGAGGATGCTGTATCTA+AGG | + | chr1_4:74259629-74259648 | None:intergenic | 45.0% | |
| CCTTAGATACAGCATCCTCA+AGG | - | chr1_4:74259626-74259645 | Msa0184690:intron | 45.0% | |
| TTCACTTGTCTGCATCCTTG+AGG | + | chr1_4:74259644-74259663 | None:intergenic | 45.0% | |
| TTGGAAAATCCAAGGGACTC+TGG | - | chr1_4:74259665-74259684 | Msa0184690:intron | 45.0% | |
| ACCTGGAGTGATGCATTTGA+TGG | - | chr1_4:74259706-74259725 | Msa0184690:intron | 45.0% | |
| ACCATCAAATGCATCACTCC+AGG | + | chr1_4:74259710-74259729 | None:intergenic | 45.0% | |
| CGAATGCAGTATACTGTTGG+AGG | + | chr1_4:74259878-74259897 | None:intergenic | 45.0% | |
| GAAAGCAGAAAGTGATTCCG+GGG | + | chr1_4:74259961-74259980 | None:intergenic | 45.0% | |
| TTGGAAAAGAGAAGGCCTCT+TGG | - | chr1_4:74260403-74260422 | Msa0184690:intron | 45.0% | |
| TGGAAAAGAGAAGGCCTCTT+GGG | - | chr1_4:74260404-74260423 | Msa0184690:intron | 45.0% | |
| !! | GGCCTCTTGGGATTTTTCAA+TGG | - | chr1_4:74260416-74260435 | Msa0184690:intron | 45.0% |
| CAGCTCTGCATTACTTCTGA+TGG | - | chr1_4:74260469-74260488 | Msa0184690:CDS | 45.0% | |
| TGCTTTCAATTTGGGGGGAT+TGG | + | chr1_4:74260558-74260577 | None:intergenic | 45.0% | |
| !! | GAAGCTACTTCTGGGGCTAT+TGG | - | chr1_4:74257972-74257991 | Msa0184690:CDS | 50.0% |
| ! | CAAGACGGTGGTGCTAACAA+GGG | + | chr1_4:74258000-74258019 | None:intergenic | 50.0% |
| ! | ACAAGACGGTGGTGCTAACA+AGG | + | chr1_4:74258001-74258020 | None:intergenic | 50.0% |
| CATTTGGCATCGTGTGCGTT+TGG | + | chr1_4:74258831-74258850 | None:intergenic | 50.0% | |
| CAAACGCACACGATGCCAAA+TGG | - | chr1_4:74258829-74258848 | Msa0184690:CDS | 50.0% | |
| ACTCTGGCAGACCTTATCAG+AGG | - | chr1_4:74259681-74259700 | Msa0184690:intron | 50.0% | |
| CTCTGGCAGACCTTATCAGA+GGG | - | chr1_4:74259682-74259701 | Msa0184690:intron | 50.0% | |
| !! | AGACCTTATCAGAGGGTACC+TGG | - | chr1_4:74259689-74259708 | Msa0184690:intron | 50.0% |
| ACTCCAGGTACCCTCTGATA+AGG | + | chr1_4:74259695-74259714 | None:intergenic | 50.0% | |
| AACCGATGCAAAGTCATCCC+CGG | - | chr1_4:74259941-74259960 | Msa0184690:intron | 50.0% | |
| TTCCGGGGATGACTTTGCAT+CGG | + | chr1_4:74259946-74259965 | None:intergenic | 50.0% | |
| GCTTGACATACCCAGCTATC+AGG | - | chr1_4:74260024-74260043 | Msa0184690:intron | 50.0% | |
| TGACATACCCAGCTATCAGG+TGG | - | chr1_4:74260027-74260046 | Msa0184690:intron | 50.0% | |
| ! | AAGCTGAAAAGAAGGCGCAG+AGG | - | chr1_4:74260354-74260373 | Msa0184690:intron | 50.0% |
| CATCAGCGCAGCACGTGTTT+GGG | - | chr1_4:74258336-74258355 | Msa0184690:intron | 55.0% | |
| ACAGACGCCGGACATAGTAG+CGG | + | chr1_4:74259165-74259184 | None:intergenic | 55.0% | |
| TAAGGTCTGCCAGAGTCCCT+TGG | + | chr1_4:74259677-74259696 | None:intergenic | 55.0% | |
| AAGGCGCAGAGGACAATCTC+TGG | - | chr1_4:74260365-74260384 | Msa0184690:intron | 55.0% | |
| GCATCAGCGCAGCACGTGTT+TGG | - | chr1_4:74258335-74258354 | Msa0184690:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 74257945 | 74260583 | 74257945 | ID=Msa0184690;Name=Msa0184690 |
| chr1_4 | mRNA | 74257945 | 74260583 | 74257945 | ID=Msa0184690-mRNA-1;Parent=Msa0184690;Name=Msa0184690-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|5|0|312 |
| chr1_4 | exon | 74260441 | 74260583 | 74260441 | ID=Msa0184690-mRNA-1:exon:25314;Parent=Msa0184690-mRNA-1 |
| chr1_4 | exon | 74259350 | 74259557 | 74259350 | ID=Msa0184690-mRNA-1:exon:25313;Parent=Msa0184690-mRNA-1 |
| chr1_4 | exon | 74258757 | 74258903 | 74258757 | ID=Msa0184690-mRNA-1:exon:25312;Parent=Msa0184690-mRNA-1 |
| chr1_4 | exon | 74258483 | 74258643 | 74258483 | ID=Msa0184690-mRNA-1:exon:25311;Parent=Msa0184690-mRNA-1 |
| chr1_4 | exon | 74257945 | 74258224 | 74257945 | ID=Msa0184690-mRNA-1:exon:25310;Parent=Msa0184690-mRNA-1 |
| chr1_4 | CDS | 74260441 | 74260583 | 74260441 | ID=Msa0184690-mRNA-1:cds;Parent=Msa0184690-mRNA-1 |
| chr1_4 | CDS | 74259350 | 74259557 | 74259350 | ID=Msa0184690-mRNA-1:cds;Parent=Msa0184690-mRNA-1 |
| chr1_4 | CDS | 74258757 | 74258903 | 74258757 | ID=Msa0184690-mRNA-1:cds;Parent=Msa0184690-mRNA-1 |
| chr1_4 | CDS | 74258483 | 74258643 | 74258483 | ID=Msa0184690-mRNA-1:cds;Parent=Msa0184690-mRNA-1 |
| chr1_4 | CDS | 74257945 | 74258224 | 74257945 | ID=Msa0184690-mRNA-1:cds;Parent=Msa0184690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
