AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1165330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165330 MtrunA17_Chr7g0271591 91.005 378 4 1 1 348 1 378 0.0 686
Msa1165330 MtrunA17_Chr1g0185571 32.635 334 181 8 45 341 66 392 3.93e-44 156
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1165330 AT1G09340.1 78.723 376 50 1 1 346 1 376 0.0 583
Msa1165330 AT1G09340.2 80.233 344 38 1 33 346 34 377 0.0 556
Msa1165330 AT3G63140.1 32.628 331 177 8 49 341 75 397 3.19e-45 159

Find 97 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCACGAGAATTATATTT+TGG 0.184935 7_4:-57161854 Msa1165330:three_prime_UTR
TGCAATCAAAGGATGTTAAT+TGG 0.201636 7_4:-57163313 Msa1165330:CDS
TTTCCCTTGTGCCTGCTCTT+AGG 0.208932 7_4:+57163356 None:intergenic
TCAACAGATGATATAATTCT+TGG 0.237761 7_4:-57161996 Msa1165330:CDS
ATAAGGCCAGTTTATATCTA+TGG 0.260089 7_4:-57163284 Msa1165330:CDS
AATTATATTGTCATTCATTA+AGG 0.269668 7_4:+57161705 None:intergenic
GACAAATATGTCACATTTGA+TGG 0.302971 7_4:-57162663 Msa1165330:CDS
TTCCCTTGTGCCTGCTCTTA+GGG 0.306111 7_4:+57163357 None:intergenic
GATGTTGTTTATGACATTAA+TGG 0.315079 7_4:-57164064 Msa1165330:intron
CACCAAGAAAATCCTCATAA+TGG 0.331776 7_4:-57164473 Msa1165330:CDS
ATTGGATGCTCTGCCTAATC+TGG 0.333691 7_4:-57163884 Msa1165330:CDS
GCCACCAATCTTGCCATGTT+TGG 0.337037 7_4:+57164935 None:intergenic
AAAAGTTGTGAAATGTTCAT+TGG 0.344253 7_4:-57161891 Msa1165330:three_prime_UTR
ATGTTAATTGGACTTCTATA+AGG 0.345137 7_4:-57163301 Msa1165330:CDS
TATATCATCTGTTGAGAAAT+CGG 0.357749 7_4:+57162004 None:intergenic
ATTAGGCAGAGCATCCAATA+TGG 0.360176 7_4:+57163888 None:intergenic
GAGACAATTAAAGACCCTTT+TGG 0.363380 7_4:+57164505 None:intergenic
CTTGGGTTAGAACCTGACTA+TGG 0.370130 7_4:-57162092 Msa1165330:CDS
CCTGAGCCGGGAATAGGAAT+TGG 0.370539 7_4:+57163203 None:intergenic
AAGACTTCAAACTCAAATTC+AGG 0.384461 7_4:-57164849 Msa1165330:intron
TGCCATGTTTGGTTGTGTAT+AGG 0.386448 7_4:+57164946 None:intergenic
TCTTCTCTTTCTGATTTCAA+TGG 0.386606 7_4:-57164875 Msa1165330:CDS
ACAGCTTACTGTTCCAGATT+AGG 0.389740 7_4:+57163871 None:intergenic
CCTGACTATGGGCTTGTAGA+AGG 0.391456 7_4:-57162080 Msa1165330:CDS
TTTATTTACTGCTCTTCTGC+TGG 0.399157 7_4:-57163623 Msa1165330:CDS
TGTATTCCTGAGCCGGGAAT+AGG 0.399617 7_4:+57163197 None:intergenic
GATGTTGAATATCTGCTTGC+TGG 0.402494 7_4:+57162692 None:intergenic
AACGGTCCATAGATATAAAC+TGG 0.409144 7_4:+57163278 None:intergenic
CCTGGCAATTGTTGAGTGAT+AGG 0.412323 7_4:+57164275 None:intergenic
ACCAAGAAAATCCTCATAAT+GGG 0.424978 7_4:-57164472 Msa1165330:CDS
ACAACCAAACATGGCAAGAT+TGG 0.426744 7_4:-57164939 Msa1165330:exon
TTATAGAAAGAAAATCATTT+CGG 0.430529 7_4:+57161791 None:intergenic
TCTTATCGCAACATAATAAG+AGG 0.445723 7_4:-57165006 Msa1165330:five_prime_UTR
AACACAACTTGGCCATGTTA+AGG 0.456532 7_4:-57163171 Msa1165330:intron
TTGAGAAATCGGCCTCTTTG+CGG 0.457734 7_4:+57162015 None:intergenic
TGTTATCTGTATTCCTGAGC+CGG 0.460045 7_4:+57163190 None:intergenic
AGAAAGTTTGTTGCAATCAA+AGG 0.466291 7_4:-57163324 Msa1165330:CDS
AATGAAAGGCTGTGGATTGA+AGG 0.467137 7_4:-57165054 Msa1165330:five_prime_UTR
GAGAAGGCAAAGAGTGTGCT+TGG 0.468611 7_4:-57162110 Msa1165330:CDS
GAAGGTTCTTGGAAATGAAA+AGG 0.475800 7_4:-57162715 Msa1165330:CDS
GATTCGTACAACCTGGACTT+TGG 0.476902 7_4:-57162050 Msa1165330:CDS
CTGAGCCGGGAATAGGAATT+GGG 0.478279 7_4:+57163204 None:intergenic
AGAAGAAGTTGAGCCCATAT+TGG 0.478482 7_4:-57163902 Msa1165330:CDS
AAGCAGATATTCAACATCTC+AGG 0.480050 7_4:-57162687 Msa1165330:CDS
TCTAGGCAACTTGTCAAAGA+AGG 0.493271 7_4:-57164421 Msa1165330:CDS
ATCTAGTACCTCCCATTATG+AGG 0.496492 7_4:+57164461 None:intergenic
CCTTCTACAAGCCCATAGTC+AGG 0.501301 7_4:+57162080 None:intergenic
TATTATTCTTAAAAGAAGGA+GGG 0.502956 7_4:-57165078 None:intergenic
TCATAGATCTTGCATTTGAA+AGG 0.505334 7_4:-57164139 Msa1165330:intron
CCAATTCCTATTCCCGGCTC+AGG 0.512651 7_4:-57163203 Msa1165330:CDS
TCTTGCATTTGAAAGGAGAC+AGG 0.513755 7_4:-57164132 Msa1165330:CDS
TTTCTTTGCATCAGTGGAGA+AGG 0.513847 7_4:-57162126 Msa1165330:CDS
GGCGACCGGCTTTCAATCTG+TGG 0.517412 7_4:+57163225 None:intergenic
GCAGCATTTCTTTGCATCAG+TGG 0.519599 7_4:-57162132 Msa1165330:intron
GGAAAGATAGTTGACTCTGT+TGG 0.532531 7_4:+57164909 None:intergenic
AGGAGGGAAATGAAAGGCTG+TGG 0.536427 7_4:-57165062 Msa1165330:five_prime_UTR
TATTATGTTGCGATAAGACT+AGG 0.543584 7_4:+57165011 None:intergenic
GTTATCTGTATTCCTGAGCC+GGG 0.543891 7_4:+57163191 None:intergenic
TACAACCTGGACTTTGGTAG+AGG 0.545552 7_4:-57162044 Msa1165330:CDS
ATGAAAGGCTGTGGATTGAA+GGG 0.546104 7_4:-57165053 Msa1165330:five_prime_UTR
ACCAAACATGGCAAGATTGG+TGG 0.546152 7_4:-57164936 Msa1165330:exon
TTAGGCAGAGCATCCAATAT+GGG 0.549553 7_4:+57163889 None:intergenic
GGGAATAGGAATTGGGCGAC+CGG 0.549653 7_4:+57163211 None:intergenic
CTGTGGATTGAAGGGAATTG+AGG 0.551893 7_4:-57165045 Msa1165330:five_prime_UTR
TTGGGTTAGAACCTGACTAT+GGG 0.553185 7_4:-57162091 Msa1165330:CDS
TCAGAAAGAGAAGAAGCTAA+AGG 0.564522 7_4:+57164884 None:intergenic
AAGTTCCTCTACCAAAGTCC+AGG 0.565993 7_4:+57162039 None:intergenic
TAGGTAACTTTATTTACAAG+AGG 0.566421 7_4:-57164305 Msa1165330:CDS
ATCCTATACACAACCAAACA+TGG 0.571114 7_4:-57164948 Msa1165330:exon
TGGATTGAAGGGAATTGAGG+TGG 0.575121 7_4:-57165042 Msa1165330:five_prime_UTR
ATTGAAGGGAATTGAGGTGG+AGG 0.578640 7_4:-57165039 Msa1165330:five_prime_UTR
ATGGGAGGTACTAGATTCAT+CGG 0.579900 7_4:-57164454 Msa1165330:CDS
AAATCTAGTCTCTCAGCAGA+AGG 0.585063 7_4:-57164091 Msa1165330:CDS
AGAAGGCAAAGAGTGTGCTT+GGG 0.585599 7_4:-57162109 Msa1165330:CDS
TCAACAGGGTTGTAATTCAA+CGG 0.586816 7_4:+57163260 None:intergenic
TAGAGGAACTTTCCGCAAAG+AGG 0.588443 7_4:-57162027 Msa1165330:CDS
ATGCAGTTGACCCTAAGAGC+AGG 0.590626 7_4:-57163367 Msa1165330:CDS
CCTATCACTCAACAATTGCC+AGG 0.592614 7_4:-57164275 Msa1165330:CDS
GAAAGAGAAGAAGCTAAAGG+AGG 0.592682 7_4:+57164887 None:intergenic
TGACCCTAAGAGCAGGCACA+AGG 0.597458 7_4:-57163360 Msa1165330:CDS
AAAGAGAAGAAGCTAAAGGA+GGG 0.599842 7_4:+57164888 None:intergenic
AAGTCAGTGTCTGATTCACC+TGG 0.605373 7_4:+57164257 None:intergenic
GGCATACGTTTCAGGACGAG+AGG 0.608829 7_4:-57163926 Msa1165330:intron
ATTACAACCCTGTTGAAGAG+TGG 0.609313 7_4:-57163253 Msa1165330:CDS
ATTAGCAAAAGCATGTGCTA+AGG 0.614920 7_4:-57162640 Msa1165330:intron
GTGAAATGTTCATTGGATTG+CGG 0.623412 7_4:-57161884 Msa1165330:three_prime_UTR
ACTTGTCAAAGAAGGTCACC+AGG 0.624824 7_4:-57164413 Msa1165330:intron
GCATTTGAAAGGAGACAGGA+AGG 0.625083 7_4:-57164128 Msa1165330:CDS
ATTAAACTGACCTCGGCGTG+AGG 0.631201 7_4:+57163575 None:intergenic
GGAATACAGATAACACAACT+TGG 0.631393 7_4:-57163182 Msa1165330:CDS
TCTTACAGATTCGTACAACC+TGG 0.632752 7_4:-57162057 Msa1165330:CDS
AAGAAAATCCTCATAATGGG+AGG 0.637190 7_4:-57164469 Msa1165330:CDS
AAAAGAAGGAGGGAAATGAA+AGG 0.640916 7_4:-57165068 None:intergenic
TTCATTACATAAAACTAACA+TGG 0.657935 7_4:-57161825 Msa1165330:three_prime_UTR
ATTACATTCATACCTTAACA+TGG 0.662084 7_4:+57163159 None:intergenic
GACCCTAAGAGCAGGCACAA+GGG 0.675285 7_4:-57163359 Msa1165330:CDS
TGATTTATTACCTCACGCCG+AGG 0.684255 7_4:-57163585 Msa1165330:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATACATTATTTATTTC+CGG + chr7_4:57162426-57162445 None:intergenic 10.0%
!!! AATAAATAATGTATTTTTGA+AGG - chr7_4:57162428-57162447 Msa1165330:intron 10.0%
!! ACATTTAATTATAAACAAAA+TGG + chr7_4:57163122-57163141 None:intergenic 10.0%
!!! TTTTGTTTATAATTAAATGT+TGG - chr7_4:57163122-57163141 Msa1165330:intron 10.0%
!! TAGTAAAACAAAATATAATA+TGG + chr7_4:57163301-57163320 None:intergenic 10.0%
!! AATATAAACAAAACTAATAA+AGG + chr7_4:57163368-57163387 None:intergenic 10.0%
!! CTTTCAAAAAAAAAAAAAAA+AGG - chr7_4:57163646-57163665 Msa1165330:intron 10.0%
!!! AAATAACTTGTAAATTTGAT+AGG - chr7_4:57162458-57162477 Msa1165330:intron 15.0%
!!! TCAAATTCAATGATTTTATT+TGG - chr7_4:57162835-57162854 Msa1165330:intron 15.0%
!!! AAATAAGGAAACAAATTTTT+AGG - chr7_4:57163054-57163073 Msa1165330:intron 15.0%
!!! TTTTGTTTATATTTTATCTC+TGG - chr7_4:57163375-57163394 Msa1165330:intron 15.0%
!! TTGTAATCATAAATATGATA+TGG + chr7_4:57164181-57164200 None:intergenic 15.0%
!! TTTAGTAAAAAAAAAACACT+TGG + chr7_4:57164264-57164283 None:intergenic 15.0%
!!! TTTTTTTACTAAAGTAGTTT+TGG - chr7_4:57164271-57164290 Msa1165330:CDS 15.0%
!! TAAAAAAAAAAATGATGTTC+TGG - chr7_4:57164848-57164867 Msa1165330:intron 15.0%
!! TTATAGAAAGAAAATCATTT+CGG + chr7_4:57164994-57165013 None:intergenic 15.0%
!! ATCTCAAATCAAATTATTAC+CGG + chr7_4:57162094-57162113 None:intergenic 20.0%
!!! ATTTGAGATATAACAAATGT+CGG - chr7_4:57162105-57162124 Msa1165330:CDS 20.0%
!!! TTTAACATGCTAATTGATTT+TGG - chr7_4:57162227-57162246 Msa1165330:intron 20.0%
!!! TATTAATGCAATTGTCATTT+TGG - chr7_4:57162976-57162995 Msa1165330:intron 20.0%
!!! TTGATCACTTTTTTATCAAT+AGG - chr7_4:57163892-57163911 Msa1165330:CDS 20.0%
!! AATGAAATTAACATGATAGT+AGG - chr7_4:57163974-57163993 Msa1165330:intron 20.0%
!!! TATGTGATTTTGACTAAAAA+TGG - chr7_4:57164010-57164029 Msa1165330:intron 20.0%
!!! TAAAGTAGTTTTGGTTTATT+TGG - chr7_4:57164280-57164299 Msa1165330:CDS 20.0%
!! TTCATTACATAAAACTAACA+TGG - chr7_4:57164957-57164976 Msa1165330:five_prime_UTR 20.0%
! TACAGTTGAAAAGAAAAACA+TGG - chr7_4:57162251-57162270 Msa1165330:intron 25.0%
! AGTAATAAATCGTATATACC+TGG + chr7_4:57162390-57162409 None:intergenic 25.0%
!!! TAATGTATTTTTGAAGGTGT+AGG - chr7_4:57162434-57162453 Msa1165330:intron 25.0%
!! TAGGTAACTTTATTTACAAG+AGG - chr7_4:57162477-57162496 Msa1165330:intron 25.0%
!! GATGTTGTTTATGACATTAA+TGG - chr7_4:57162718-57162737 Msa1165330:CDS 25.0%
! TTAACATGAAGAGTAAGAAA+TGG + chr7_4:57162783-57162802 None:intergenic 25.0%
! TGACTTTGATTACACAAATA+AGG - chr7_4:57163039-57163058 Msa1165330:intron 25.0%
! ATGTTAATTGGACTTCTATA+AGG - chr7_4:57163481-57163500 Msa1165330:intron 25.0%
! ATTACATTCATACCTTAACA+TGG + chr7_4:57163626-57163645 None:intergenic 25.0%
! TAAAGAACTGTAACATCTAA+AGG + chr7_4:57163687-57163706 None:intergenic 25.0%
!! AATTTTGTGATTTGAAGACT+TGG - chr7_4:57163727-57163746 Msa1165330:intron 25.0%
! AAAAATGGTTAAATTGTGAC+AGG - chr7_4:57164025-57164044 Msa1165330:intron 25.0%
! TTTCCAAAATCAAAGTCTTT+CGG + chr7_4:57164354-57164373 None:intergenic 25.0%
!!! GTAGTTTTACTTTTAGTCAT+TGG + chr7_4:57164435-57164454 None:intergenic 25.0%
!!! TATCACACGTGTTTTAATAT+TGG + chr7_4:57164511-57164530 None:intergenic 25.0%
!! TTGATTTTTCTATGTAGTAG+GGG + chr7_4:57164546-57164565 None:intergenic 25.0%
!!! GTTGATTTTTCTATGTAGTA+GGG + chr7_4:57164547-57164566 None:intergenic 25.0%
!!! TGTTGATTTTTCTATGTAGT+AGG + chr7_4:57164548-57164567 None:intergenic 25.0%
! ATGATTTCACTAATGAAAGA+AGG + chr7_4:57164593-57164612 None:intergenic 25.0%
! TATATCATCTGTTGAGAAAT+CGG + chr7_4:57164781-57164800 None:intergenic 25.0%
! TCAACAGATGATATAATTCT+TGG - chr7_4:57164786-57164805 Msa1165330:intron 25.0%
! AAAAGTTGTGAAATGTTCAT+TGG - chr7_4:57164891-57164910 Msa1165330:CDS 25.0%
TATTATGTTGCGATAAGACT+AGG + chr7_4:57161774-57161793 None:intergenic 30.0%
TCTTATCGCAACATAATAAG+AGG - chr7_4:57161776-57161795 Msa1165330:three_prime_UTR 30.0%
TCTTCTCTTTCTGATTTCAA+TGG - chr7_4:57161907-57161926 Msa1165330:three_prime_UTR 30.0%
AAGACTTCAAACTCAAATTC+AGG - chr7_4:57161933-57161952 Msa1165330:three_prime_UTR 30.0%
ATCACTTTCATTTCATGCAT+AGG - chr7_4:57161994-57162013 Msa1165330:CDS 30.0%
AGTAATGTTTCTCACATACA+CGG - chr7_4:57162046-57162065 Msa1165330:CDS 30.0%
ACCAAGAAAATCCTCATAAT+GGG - chr7_4:57162310-57162329 Msa1165330:intron 30.0%
ATTACTCATTTGACTCTAAC+CGG - chr7_4:57162404-57162423 Msa1165330:intron 30.0%
CATTTACAATTAGCATACCT+TGG + chr7_4:57162565-57162584 None:intergenic 30.0%
GTAAATGTAAACATCAAAGC+TGG - chr7_4:57162578-57162597 Msa1165330:intron 30.0%
TCATAGATCTTGCATTTGAA+AGG - chr7_4:57162643-57162662 Msa1165330:CDS 30.0%
!! TTTTATTTGGCATACGTTTC+AGG - chr7_4:57162848-57162867 Msa1165330:intron 30.0%
!! AAATGTTGGTTCTAAATGTC+AGG - chr7_4:57163136-57163155 Msa1165330:intron 30.0%
AGTGTAAATTAAACTGACCT+CGG + chr7_4:57163217-57163236 None:intergenic 30.0%
!! AGAAAGTTTGTTGCAATCAA+AGG - chr7_4:57163458-57163477 Msa1165330:intron 30.0%
TGCAATCAAAGGATGTTAAT+TGG - chr7_4:57163469-57163488 Msa1165330:intron 30.0%
ATAAGGCCAGTTTATATCTA+TGG - chr7_4:57163498-57163517 Msa1165330:intron 30.0%
TATCATATCTCATCCAATGT+AGG + chr7_4:57163782-57163801 None:intergenic 30.0%
! GATTTTGTAGCAGTTTACTT+TGG - chr7_4:57163853-57163872 Msa1165330:intron 30.0%
GACAAATATGTCACATTTGA+TGG - chr7_4:57164119-57164138 Msa1165330:CDS 30.0%
TTGGTTTATTTGGTCATTTC+AGG - chr7_4:57164290-57164309 Msa1165330:CDS 30.0%
TTCCAAAATCAAAGTCTTTC+GGG + chr7_4:57164353-57164372 None:intergenic 30.0%
CTACATGAACTAAAAGCAAA+AGG - chr7_4:57164451-57164470 Msa1165330:CDS 30.0%
!! AAAAGGTGCTATATTTGCAA+GGG - chr7_4:57164468-57164487 Msa1165330:CDS 30.0%
! CTTGCACGAGAATTATATTT+TGG - chr7_4:57164928-57164947 Msa1165330:CDS 30.0%
ATCCTATACACAACCAAACA+TGG - chr7_4:57161834-57161853 Msa1165330:three_prime_UTR 35.0%
AAAGAGAAGAAGCTAAAGGA+GGG + chr7_4:57161897-57161916 None:intergenic 35.0%
TCAGAAAGAGAAGAAGCTAA+AGG + chr7_4:57161901-57161920 None:intergenic 35.0%
ACTTTCATTTCATGCATAGG+AGG - chr7_4:57161997-57162016 Msa1165330:CDS 35.0%
AGAAAAACATGGCAACCAAA+AGG - chr7_4:57162262-57162281 Msa1165330:intron 35.0%
GAAAAACATGGCAACCAAAA+GGG - chr7_4:57162263-57162282 Msa1165330:intron 35.0%
! GAGACAATTAAAGACCCTTT+TGG + chr7_4:57162280-57162299 None:intergenic 35.0%
CACCAAGAAAATCCTCATAA+TGG - chr7_4:57162309-57162328 Msa1165330:intron 35.0%
! TCCCATTATGAGGATTTTCT+TGG + chr7_4:57162314-57162333 None:intergenic 35.0%
! AAGAAAATCCTCATAATGGG+AGG - chr7_4:57162313-57162332 Msa1165330:intron 35.0%
!!! CTTTGCTGATTTTTCTTCCA+AGG - chr7_4:57162545-57162564 Msa1165330:intron 35.0%
GAAATGGTATTCAGTACAGA+AGG + chr7_4:57162767-57162786 None:intergenic 35.0%
TTTATTTACTGCTCTTCTGC+TGG - chr7_4:57163159-57163178 Msa1165330:intron 35.0%
AACGGTCCATAGATATAAAC+TGG + chr7_4:57163507-57163526 None:intergenic 35.0%
TCAACAGGGTTGTAATTCAA+CGG + chr7_4:57163525-57163544 None:intergenic 35.0%
! TTTTTCCACAGATTGAAAGC+CGG - chr7_4:57163552-57163571 Msa1165330:intron 35.0%
GGAATACAGATAACACAACT+TGG - chr7_4:57163600-57163619 Msa1165330:CDS 35.0%
TACAAAATCAGCAGTATCAG+AGG + chr7_4:57163842-57163861 None:intergenic 35.0%
TTTGTAAATGCTTGCCTTCT+AGG - chr7_4:57163918-57163937 Msa1165330:intron 35.0%
ATCTTCAAAAGCAACCTAGA+AGG + chr7_4:57163935-57163954 None:intergenic 35.0%
GGTTAAATTGTGACAGGATT+TGG - chr7_4:57164031-57164050 Msa1165330:intron 35.0%
GAAGGTTCTTGGAAATGAAA+AGG - chr7_4:57164067-57164086 Msa1165330:CDS 35.0%
AAGCAGATATTCAACATCTC+AGG - chr7_4:57164095-57164114 Msa1165330:CDS 35.0%
! ATTAGCAAAAGCATGTGCTA+AGG - chr7_4:57164142-57164161 Msa1165330:intron 35.0%
TTTATTTGGTCATTTCAGGC+TGG - chr7_4:57164294-57164313 Msa1165330:CDS 35.0%
!! AGTGAATGATTTCTGGTTCA+GGG + chr7_4:57164326-57164345 None:intergenic 35.0%
!! TAGTGAATGATTTCTGGTTC+AGG + chr7_4:57164327-57164346 None:intergenic 35.0%
!! AACCCGAAAGACTTTGATTT+TGG - chr7_4:57164348-57164367 Msa1165330:intron 35.0%
!! CAAAAGGTGCTATATTTGCA+AGG - chr7_4:57164467-57164486 Msa1165330:CDS 35.0%
GTGAAATGTTCATTGGATTG+CGG - chr7_4:57164898-57164917 Msa1165330:CDS 35.0%
! AATGAAAGGCTGTGGATTGA+AGG - chr7_4:57161728-57161747 Msa1165330:three_prime_UTR 40.0%
! ATGAAAGGCTGTGGATTGAA+GGG - chr7_4:57161729-57161748 Msa1165330:three_prime_UTR 40.0%
TGCCATGTTTGGTTGTGTAT+AGG + chr7_4:57161839-57161858 None:intergenic 40.0%
ACAACCAAACATGGCAAGAT+TGG - chr7_4:57161843-57161862 Msa1165330:three_prime_UTR 40.0%
! GGAAAGATAGTTGACTCTGT+TGG + chr7_4:57161876-57161895 None:intergenic 40.0%
GAAAGAGAAGAAGCTAAAGG+AGG + chr7_4:57161898-57161917 None:intergenic 40.0%
CTATGTAGCATCAACACTTC+AGG + chr7_4:57162133-57162152 None:intergenic 40.0%
ATCTAGTACCTCCCATTATG+AGG + chr7_4:57162324-57162343 None:intergenic 40.0%
!! ATGGGAGGTACTAGATTCAT+CGG - chr7_4:57162328-57162347 Msa1165330:intron 40.0%
!! TCATCGGTGTGTTTTTGTCT+AGG - chr7_4:57162344-57162363 Msa1165330:intron 40.0%
TCTAGGCAACTTGTCAAAGA+AGG - chr7_4:57162361-57162380 Msa1165330:intron 40.0%
TCTTGCATTTGAAAGGAGAC+AGG - chr7_4:57162650-57162669 Msa1165330:CDS 40.0%
AAATCTAGTCTCTCAGCAGA+AGG - chr7_4:57162691-57162710 Msa1165330:CDS 40.0%
AGAAGAAGTTGAGCCCATAT+TGG - chr7_4:57162880-57162899 Msa1165330:intron 40.0%
! TTAGGCAGAGCATCCAATAT+GGG + chr7_4:57162896-57162915 None:intergenic 40.0%
! ATTAGGCAGAGCATCCAATA+TGG + chr7_4:57162897-57162916 None:intergenic 40.0%
ACAGCTTACTGTTCCAGATT+AGG + chr7_4:57162914-57162933 None:intergenic 40.0%
TGCCATGATGCAATTGTTTG+AGG - chr7_4:57163264-57163283 Msa1165330:CDS 40.0%
TGCCTCAAACAATTGCATCA+TGG + chr7_4:57163269-57163288 None:intergenic 40.0%
ATTACAACCCTGTTGAAGAG+TGG - chr7_4:57163529-57163548 Msa1165330:intron 40.0%
GGAAAAACCACTCTTCAACA+GGG + chr7_4:57163539-57163558 None:intergenic 40.0%
TGGAAAAACCACTCTTCAAC+AGG + chr7_4:57163540-57163559 None:intergenic 40.0%
TGTTATCTGTATTCCTGAGC+CGG + chr7_4:57163595-57163614 None:intergenic 40.0%
AACACAACTTGGCCATGTTA+AGG - chr7_4:57163611-57163630 Msa1165330:CDS 40.0%
CATGTTGAGAAGTCCTACAT+TGG - chr7_4:57163766-57163785 Msa1165330:intron 40.0%
! ACAGCTTTTGTGAAGGTTCT+TGG - chr7_4:57164056-57164075 Msa1165330:intron 40.0%
GATGTTGAATATCTGCTTGC+TGG + chr7_4:57164093-57164112 None:intergenic 40.0%
GGGTTGTAGTGAATGATTTC+TGG + chr7_4:57164333-57164352 None:intergenic 40.0%
TTTCTTTGCATCAGTGGAGA+AGG - chr7_4:57164656-57164675 Msa1165330:intron 40.0%
! TTGGGTTAGAACCTGACTAT+GGG - chr7_4:57164691-57164710 Msa1165330:intron 40.0%
TCTTACAGATTCGTACAACC+TGG - chr7_4:57164725-57164744 Msa1165330:intron 40.0%
! CTGTGGATTGAAGGGAATTG+AGG - chr7_4:57161737-57161756 Msa1165330:three_prime_UTR 45.0%
TGGATTGAAGGGAATTGAGG+TGG - chr7_4:57161740-57161759 Msa1165330:three_prime_UTR 45.0%
ATTGAAGGGAATTGAGGTGG+AGG - chr7_4:57161743-57161762 Msa1165330:three_prime_UTR 45.0%
ACCAAACATGGCAAGATTGG+TGG - chr7_4:57161846-57161865 Msa1165330:three_prime_UTR 45.0%
TTTCTCACATACACGGACAC+CGG - chr7_4:57162053-57162072 Msa1165330:CDS 45.0%
!! CCGGTGTTGAGTATTTTGTC+CGG + chr7_4:57162075-57162094 None:intergenic 45.0%
CCGGACAAAATACTCAACAC+CGG - chr7_4:57162072-57162091 Msa1165330:CDS 45.0%
ACTTGTCAAAGAAGGTCACC+AGG - chr7_4:57162369-57162388 Msa1165330:intron 45.0%
CCTGGCAATTGTTGAGTGAT+AGG + chr7_4:57162510-57162529 None:intergenic 45.0%
CCTATCACTCAACAATTGCC+AGG - chr7_4:57162507-57162526 Msa1165330:intron 45.0%
AAGTCAGTGTCTGATTCACC+TGG + chr7_4:57162528-57162547 None:intergenic 45.0%
GCATTTGAAAGGAGACAGGA+AGG - chr7_4:57162654-57162673 Msa1165330:CDS 45.0%
ATTGGATGCTCTGCCTAATC+TGG - chr7_4:57162898-57162917 Msa1165330:intron 45.0%
TGATTTATTACCTCACGCCG+AGG - chr7_4:57163197-57163216 Msa1165330:CDS 45.0%
GTTATCTGTATTCCTGAGCC+GGG + chr7_4:57163594-57163613 None:intergenic 45.0%
! TTTGGCGACAGCTTTTGTGA+AGG - chr7_4:57164049-57164068 Msa1165330:intron 45.0%
ATTTGGTCATTTCAGGCTGG+TGG - chr7_4:57164297-57164316 Msa1165330:CDS 45.0%
TTTGGTCATTTCAGGCTGGT+GGG - chr7_4:57164298-57164317 Msa1165330:CDS 45.0%
GTCATTTCCATTTCGCGATC+AGG - chr7_4:57164380-57164399 Msa1165330:intron 45.0%
TACTTCACCTGATCGCGAAA+TGG + chr7_4:57164390-57164409 None:intergenic 45.0%
GCAGCATTTCTTTGCATCAG+TGG - chr7_4:57164650-57164669 Msa1165330:intron 45.0%
! AGAAGGCAAAGAGTGTGCTT+GGG - chr7_4:57164673-57164692 Msa1165330:intron 45.0%
! CTTGGGTTAGAACCTGACTA+TGG - chr7_4:57164690-57164709 Msa1165330:intron 45.0%
GATTCGTACAACCTGGACTT+TGG - chr7_4:57164732-57164751 Msa1165330:intron 45.0%
TACAACCTGGACTTTGGTAG+AGG - chr7_4:57164738-57164757 Msa1165330:intron 45.0%
AAGTTCCTCTACCAAAGTCC+AGG + chr7_4:57164746-57164765 None:intergenic 45.0%
TAGAGGAACTTTCCGCAAAG+AGG - chr7_4:57164755-57164774 Msa1165330:intron 45.0%
TTGAGAAATCGGCCTCTTTG+CGG + chr7_4:57164770-57164789 None:intergenic 45.0%
AGGAGGGAAATGAAAGGCTG+TGG - chr7_4:57161720-57161739 Msa1165330:three_prime_UTR 50.0%
GCCACCAATCTTGCCATGTT+TGG + chr7_4:57161850-57161869 None:intergenic 50.0%
ATTAAACTGACCTCGGCGTG+AGG + chr7_4:57163210-57163229 None:intergenic 50.0%
ATGCAGTTGACCCTAAGAGC+AGG - chr7_4:57163415-57163434 Msa1165330:intron 50.0%
TTCCCTTGTGCCTGCTCTTA+GGG + chr7_4:57163428-57163447 None:intergenic 50.0%
TTTCCCTTGTGCCTGCTCTT+AGG + chr7_4:57163429-57163448 None:intergenic 50.0%
CTGAGCCGGGAATAGGAATT+GGG + chr7_4:57163581-57163600 None:intergenic 50.0%
TGTATTCCTGAGCCGGGAAT+AGG + chr7_4:57163588-57163607 None:intergenic 50.0%
! GAGAAGGCAAAGAGTGTGCT+TGG - chr7_4:57164672-57164691 Msa1165330:intron 50.0%
CCTTCTACAAGCCCATAGTC+AGG + chr7_4:57164705-57164724 None:intergenic 50.0%
CCTGACTATGGGCTTGTAGA+AGG - chr7_4:57164702-57164721 Msa1165330:intron 50.0%
GGCATACGTTTCAGGACGAG+AGG - chr7_4:57162856-57162875 Msa1165330:intron 55.0%
TGACCCTAAGAGCAGGCACA+AGG - chr7_4:57163422-57163441 Msa1165330:intron 55.0%
GACCCTAAGAGCAGGCACAA+GGG - chr7_4:57163423-57163442 Msa1165330:intron 55.0%
GGGAATAGGAATTGGGCGAC+CGG + chr7_4:57163574-57163593 None:intergenic 55.0%
GGTCGCCCAATTCCTATTCC+CGG - chr7_4:57163573-57163592 Msa1165330:intron 55.0%
CCTGAGCCGGGAATAGGAAT+TGG + chr7_4:57163582-57163601 None:intergenic 55.0%
CCAATTCCTATTCCCGGCTC+AGG - chr7_4:57163579-57163598 Msa1165330:intron 55.0%
! GGCGACCGGCTTTCAATCTG+TGG + chr7_4:57163560-57163579 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 57161719 57165085 57161719 ID=Msa1165330;Name=Msa1165330
chr7_4 mRNA 57161719 57165085 57161719 ID=Msa1165330-mRNA-1;Parent=Msa1165330;Name=Msa1165330-mRNA-1;_AED=0.07;_eAED=0.07;_QI=134|0.87|1|1|1|1|9|255|348
chr7_4 exon 57161719 57162150 57161719 ID=Msa1165330-mRNA-1:exon:17212;Parent=Msa1165330-mRNA-1
chr7_4 exon 57162641 57162757 57162641 ID=Msa1165330-mRNA-1:exon:17211;Parent=Msa1165330-mRNA-1
chr7_4 exon 57163172 57163393 57163172 ID=Msa1165330-mRNA-1:exon:17210;Parent=Msa1165330-mRNA-1
chr7_4 exon 57163586 57163646 57163586 ID=Msa1165330-mRNA-1:exon:17209;Parent=Msa1165330-mRNA-1
chr7_4 exon 57163880 57163934 57163880 ID=Msa1165330-mRNA-1:exon:17208;Parent=Msa1165330-mRNA-1
chr7_4 exon 57164065 57164155 57164065 ID=Msa1165330-mRNA-1:exon:17207;Parent=Msa1165330-mRNA-1
chr7_4 exon 57164238 57164324 57164238 ID=Msa1165330-mRNA-1:exon:17206;Parent=Msa1165330-mRNA-1
chr7_4 exon 57164414 57164548 57164414 ID=Msa1165330-mRNA-1:exon:17205;Parent=Msa1165330-mRNA-1
chr7_4 exon 57164850 57165085 57164850 ID=Msa1165330-mRNA-1:exon:17204;Parent=Msa1165330-mRNA-1
chr7_4 five_prime_UTR 57164952 57165085 57164952 ID=Msa1165330-mRNA-1:five_prime_utr;Parent=Msa1165330-mRNA-1
chr7_4 CDS 57164850 57164951 57164850 ID=Msa1165330-mRNA-1:cds;Parent=Msa1165330-mRNA-1
chr7_4 CDS 57164414 57164548 57164414 ID=Msa1165330-mRNA-1:cds;Parent=Msa1165330-mRNA-1
chr7_4 CDS 57164238 57164324 57164238 ID=Msa1165330-mRNA-1:cds;Parent=Msa1165330-mRNA-1
chr7_4 CDS 57164065 57164155 57164065 ID=Msa1165330-mRNA-1:cds;Parent=Msa1165330-mRNA-1
chr7_4 CDS 57163880 57163934 57163880 ID=Msa1165330-mRNA-1:cds;Parent=Msa1165330-mRNA-1
chr7_4 CDS 57163586 57163646 57163586 ID=Msa1165330-mRNA-1:cds;Parent=Msa1165330-mRNA-1
chr7_4 CDS 57163172 57163393 57163172 ID=Msa1165330-mRNA-1:cds;Parent=Msa1165330-mRNA-1
chr7_4 CDS 57162641 57162757 57162641 ID=Msa1165330-mRNA-1:cds;Parent=Msa1165330-mRNA-1
chr7_4 CDS 57161974 57162150 57161974 ID=Msa1165330-mRNA-1:cds;Parent=Msa1165330-mRNA-1
chr7_4 three_prime_UTR 57161719 57161973 57161719 ID=Msa1165330-mRNA-1:three_prime_utr;Parent=Msa1165330-mRNA-1
Gene Sequence

>Msa1165330

ATGGCAAGATTGGTGGCACTCCAACAGAGTCAACTATCTTTCCCTCCTTTAGCTTCTTCTCTTTCTGATTTCAATGGAGCAAGACTTCAAACTCAAATTCAGTTGAAAAGAAAAACATGGCAACCAAAAGGGTCTTTAATTGTCTCAGCATCAAGCACCAAGAAAATCCTCATAATGGGAGGTACTAGATTCATCGGTGTGTTTTTGTCTAGGCAACTTGTCAAAGAAGGTCACCAGGTAACTTTATTTACAAGAGGAAAAGCACCTATCACTCAACAATTGCCAGGTGAATCAGACACTGACTTTGCTGATTTTTCTTCCAAGATCTTGCATTTGAAAGGAGACAGGAAGGACTATGATTTTGTAAAATCTAGTCTCTCAGCAGAAGGATTTGATGTTGTTTATGACATTAATGGACGAGAGGCAGAAGAAGTTGAGCCCATATTGGATGCTCTGCCTAATCTGGAACAGTTTATTTACTGCTCTTCTGCTGGCGTCTATCTCAAGTCTGATTTATTACCTCACGCCGAGATTGATGCAGTTGACCCTAAGAGCAGGCACAAGGGAAAGCTTGAAACAGAAAGTTTGTTGCAATCAAAGGATGTTAATTGGACTTCTATAAGGCCAGTTTATATCTATGGACCGTTGAATTACAACCCTGTTGAAGAGTGGTTTTTCCACAGATTGAAAGCCGGTCGCCCAATTCCTATTCCCGGCTCAGGAATACAGATAACACAACTTGGCCATGTTAAGGATTTGGCGACAGCTTTTGTGAAGGTTCTTGGAAATGAAAAGGCCAGCAAGCAGATATTCAACATCTCAGGAGACAAATATGTCACATTTGATGGATTAGCAAAAGCATGTGCTAAGCATTTCTTTGCATCAGTGGAGAAGGCAAAGAGTGTGCTTGGGTTAGAACCTGACTATGGGCTTGTAGAAGGTCTTACAGATTCGTACAACCTGGACTTTGGTAGAGGAACTTTCCGCAAAGAGGCCGATTTCTCAACAGATGATATAATTCTTGGCAAGAGTCTTGTTAGTGTATGA

Protein sequence

>Msa1165330

MARLVALQQSQLSFPPLASSLSDFNGARLQTQIQLKRKTWQPKGSLIVSASSTKKILIMGGTRFIGVFLSRQLVKEGHQVTLFTRGKAPITQQLPGESDTDFADFSSKILHLKGDRKDYDFVKSSLSAEGFDVVYDINGREAEEVEPILDALPNLEQFIYCSSAGVYLKSDLLPHAEIDAVDPKSRHKGKLETESLLQSKDVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPGSGIQITQLGHVKDLATAFVKVLGNEKASKQIFNISGDKYVTFDGLAKACAKHFFASVEKAKSVLGLEPDYGLVEGLTDSYNLDFGRGTFRKEADFSTDDIILGKSLVSV*