AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0768240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0768240 MtrunA17_Chr5g0423381 92.877 351 11 1 1 337 1 351 0.0 663
Msa0768240 MtrunA17_Chr1g0188361 30.499 341 194 12 13 316 46 380 1.55e-41 149
Msa0768240 MtrunA17_Chr8g0372991 30.719 306 164 9 59 336 84 369 5.46e-36 134
Msa0768240 MtrunA17_Chr4g0018641 28.000 300 175 9 49 325 394 675 3.78e-24 103
Msa0768240 MtrunA17_Chr3g0090521 24.561 285 181 7 83 333 173 457 2.23e-19 89.0
Msa0768240 MtrunA17_Chr4g0003831 24.031 258 168 7 90 330 400 646 8.40e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0768240 AT5G19850.1 68.868 318 81 3 23 326 46 359 3.12e-167 470
Msa0768240 AT4G36530.1 28.247 308 179 7 57 336 25 318 2.81e-35 131
Msa0768240 AT4G36530.2 28.402 338 193 9 30 336 56 375 9.06e-35 130
Msa0768240 AT5G38520.1 29.260 311 183 10 46 325 54 358 1.50e-34 130
Msa0768240 AT5G38520.2 28.173 323 183 10 46 325 54 370 8.50e-33 125
Msa0768240 AT5G13800.3 25.965 285 173 7 83 332 161 442 3.50e-22 97.4
Msa0768240 AT5G13800.2 25.965 285 173 7 83 332 138 419 3.69e-22 97.4
Msa0768240 AT5G13800.1 25.965 285 173 7 83 332 138 419 3.69e-22 97.4
Msa0768240 AT4G25290.1 28.990 307 172 11 45 325 383 669 1.89e-21 95.9
Msa0768240 AT5G13800.4 25.843 267 161 6 83 314 138 402 6.48e-20 90.1
Msa0768240 AT1G80280.1 23.506 251 166 7 90 325 402 641 1.46e-11 65.9

Find 118 sgRNAs with CRISPR-Local

Find 417 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATACTCTATTGATCTTAT+TGG 0.166414 5_2:+33291194 Msa0768240:CDS
TAGAAATACATGGAAGAATT+TGG 0.168773 5_2:-33295651 None:intergenic
AAATTCTTCCATGTATTTCT+AGG 0.188649 5_2:+33295653 Msa0768240:three_prime_UTR
TCTATTGATCTTATTGGATA+TGG 0.205615 5_2:+33291200 Msa0768240:CDS
AATATTCGCTATCAATATTC+TGG 0.257699 5_2:+33290092 Msa0768240:CDS
CCATGTATCAAACGTGTAAA+AGG 0.281790 5_2:-33291264 None:intergenic
AGAAATACATGGAAGAATTT+GGG 0.290936 5_2:-33295650 None:intergenic
ATACGATGTAGAAATGTTAA+AGG 0.295873 5_2:-33295579 None:intergenic
AAAATGTGTAGATATGAATT+TGG 0.297947 5_2:+33295682 Msa0768240:three_prime_UTR
TTCTTTATATGCAATTCTAT+TGG 0.304916 5_2:+33291335 Msa0768240:CDS
TGCAGGAGTTGTAGGTCTTC+AGG 0.314699 5_2:+33291473 Msa0768240:intron
ATCTGTACCTAAGCAATCTT+TGG 0.314812 5_2:-33291608 None:intergenic
CAACGGTCCTGCATTAGTTT+TGG 0.317095 5_2:+33290118 Msa0768240:CDS
TCTCCAATTTGACGAGGATT+TGG 0.317385 5_2:-33291236 None:intergenic
TTATATGATCAAGGGAATTA+AGG 0.327067 5_2:+33295614 Msa0768240:three_prime_UTR
AAACCAAATCCTCGTCAAAT+TGG 0.328365 5_2:+33291233 Msa0768240:CDS
TGGAAGAATTTGGGGAATAG+AGG 0.348910 5_2:-33295641 None:intergenic
TAATTTCTTCCCATCTCAAT+TGG 0.373655 5_2:-33292797 None:intergenic
TCATTTGCTTCCACCAATAG+TGG 0.390370 5_2:+33295307 Msa0768240:three_prime_UTR
CTACATCGTATTAGAGTCCT+AGG 0.398922 5_2:+33295591 Msa0768240:three_prime_UTR
ATATGTGTATTGTACATCAT+TGG 0.400169 5_2:+33295459 Msa0768240:three_prime_UTR
TCCTTGTACTCTCCTATAGA+AGG 0.409809 5_2:+33295520 Msa0768240:three_prime_UTR
AGGAATCAAGTCCTAAAGTT+AGG 0.411045 5_2:-33295501 None:intergenic
TGAGGGCAATGGCCAACATT+TGG 0.415552 5_2:-33292857 None:intergenic
AATTCTTCCATGTATTTCTA+GGG 0.415988 5_2:+33295654 Msa0768240:three_prime_UTR
TGAAACGCTGCTCCTTCTAT+AGG 0.422041 5_2:-33295532 None:intergenic
TTACTCAGGAGGCCCTCTTC+CGG 0.423885 5_2:+33292614 Msa0768240:CDS
AAGGGGATAGTGTTCGAGGA+TGG 0.426410 5_2:-33289832 None:intergenic
TTCATTGTTCTTCCAAATGT+TGG 0.429029 5_2:+33292845 Msa0768240:CDS
CTTGAGTTTATTTGTTACTC+AGG 0.435166 5_2:+33292600 Msa0768240:CDS
CTTAGTCCAGGGCTGGAACC+TGG 0.439933 5_2:+33292561 Msa0768240:CDS
AGAATTCCCTTGCAGATTTG+TGG 0.439987 5_2:-33291510 None:intergenic
ATTGAGATGGGAAGAAATTA+CGG 0.440012 5_2:+33292800 Msa0768240:CDS
TGGGGTAAGAGATGAAGATT+TGG 0.443933 5_2:-33295215 None:intergenic
TTTATATGCAATTCTATTGG+AGG 0.447257 5_2:+33291338 Msa0768240:CDS
ATCGAAAGATTCACTTTGGA+AGG 0.452190 5_2:+33295371 Msa0768240:three_prime_UTR
CACTAGCTCATCGGTCACTT+TGG 0.454248 5_2:-33292529 None:intergenic
GTTCATTCCAAAGATTGCTT+AGG 0.456751 5_2:+33291601 Msa0768240:CDS
TACGATGTAGAAATGTTAAA+GGG 0.458243 5_2:-33295578 None:intergenic
GTGCAGCTCATCCTTAGTCC+AGG 0.460929 5_2:+33292549 Msa0768240:CDS
AGTCACTTTATTGATGCTGC+CGG 0.462675 5_2:+33295259 Msa0768240:three_prime_UTR
TGTTATAGGGATACTTCTGT+TGG 0.462681 5_2:+33291707 Msa0768240:intron
CATGGGGTGACAAGGATCCT+TGG 0.467501 5_2:+33292771 Msa0768240:CDS
GGTAGCAGTTCCTCCGGAAG+AGG 0.470234 5_2:-33292627 None:intergenic
AAATGTTGGCCATTGCCCTC+AGG 0.470508 5_2:+33292859 Msa0768240:CDS
TTCCATCGAAAGATTCACTT+TGG 0.471676 5_2:+33295367 Msa0768240:three_prime_UTR
TCACCCCATGCTATCAAAAC+CGG 0.475442 5_2:-33292758 None:intergenic
ATATTCGCTATCAATATTCT+GGG 0.476186 5_2:+33290093 Msa0768240:CDS
CAGGTTCCAGCCCTGGACTA+AGG 0.476545 5_2:-33292560 None:intergenic
GTACTTGTAGCATGTGGAAT+TGG 0.478100 5_2:+33290060 Msa0768240:intron
GCATCAATAAAGTGACTGAC+AGG 0.479203 5_2:-33295253 None:intergenic
CCCACTTGTGGAGTCATTTG+TGG 0.479333 5_2:+33295183 Msa0768240:CDS
AGGGGATAGTGTTCGAGGAT+GGG 0.479459 5_2:-33289831 None:intergenic
GCATTGTTGCAGTGAATCAA+TGG 0.481133 5_2:+33289739 Msa0768240:five_prime_UTR
GGAGGAAACTTACCTTTACT+CGG 0.485365 5_2:-33292650 None:intergenic
ATGGGGTGACAAGGATCCTT+GGG 0.486295 5_2:+33292772 Msa0768240:CDS
AGTCCTAGGTTATATGATCA+AGG 0.488507 5_2:+33295605 Msa0768240:three_prime_UTR
CCCATCTCAATTGGTTCCCA+AGG 0.492479 5_2:-33292788 None:intergenic
CTGGCATAAAATGTTCTTCA+CGG 0.494720 5_2:-33291765 None:intergenic
TCACTTTGGAAGGAAAAGTA+AGG 0.499703 5_2:+33295381 Msa0768240:three_prime_UTR
TTCATATAAAGAAGCAGCCT+TGG 0.511606 5_2:+33291559 Msa0768240:CDS
ACAGCACCAGGTTCCAGCCC+TGG 0.513560 5_2:-33292567 None:intergenic
GCTCATCCTTAGTCCAGGGC+TGG 0.515765 5_2:+33292554 Msa0768240:CDS
TTCCAAAGTGAATCTTTCGA+TGG 0.516219 5_2:-33295369 None:intergenic
GTCACTTTATTGATGCTGCC+GGG 0.518623 5_2:+33295260 Msa0768240:three_prime_UTR
CATTTGCTTCCACCAATAGT+GGG 0.522676 5_2:+33295308 Msa0768240:three_prime_UTR
GGAAGAATTTGGGGAATAGA+GGG 0.523251 5_2:-33295640 None:intergenic
TCCTTGGGAACCAATTGAGA+TGG 0.531636 5_2:+33292787 Msa0768240:CDS
GAGTTTATTTGTTACTCAGG+AGG 0.533102 5_2:+33292603 Msa0768240:CDS
GAGTAAGGGGATAGTGTTCG+AGG 0.535493 5_2:-33289836 None:intergenic
GGAGAGAGTGAGAGTTGTGG+TGG 0.536782 5_2:-33289810 None:intergenic
TTGTAGCATGTGGAATTGGA+AGG 0.541812 5_2:+33290064 Msa0768240:intron
GTAGCAGTTCCTCCGGAAGA+GGG 0.543767 5_2:-33292626 None:intergenic
CAGGGAATCAATCAACTGAT+GGG 0.544170 5_2:-33295234 None:intergenic
CTTTGGAATGAACTGATGAA+AGG 0.547460 5_2:-33291591 None:intergenic
TTTCTACCCCTAGAAATACA+TGG 0.555023 5_2:-33295661 None:intergenic
TACGCAAAGATATATTAAGA+AGG 0.556446 5_2:-33291533 None:intergenic
TGCAGCTCATCCTTAGTCCA+GGG 0.557489 5_2:+33292550 Msa0768240:CDS
TCAACTTGTGAACCCACTTG+TGG 0.558784 5_2:+33295171 Msa0768240:CDS
ACTCGGGGTAGCAGTTCCTC+CGG 0.559968 5_2:-33292633 None:intergenic
GGAACTGAAACGAATAGAGT+TGG 0.561499 5_2:+33289760 Msa0768240:five_prime_UTR
GAGGAAACTTACCTTTACTC+GGG 0.563741 5_2:-33292649 None:intergenic
TTGTGGAGTCATTTGTGGCA+CGG 0.566169 5_2:+33295188 Msa0768240:CDS
GGAACTGCTACCCCGAGTAA+AGG 0.566776 5_2:+33292638 Msa0768240:CDS
ACAAGTGGGTTCACAAGTTG+AGG 0.568774 5_2:-33295169 None:intergenic
CCGTGCACCAAAACTAATGC+AGG 0.570869 5_2:-33290125 None:intergenic
GTCCTAGGTTATATGATCAA+GGG 0.573497 5_2:+33295606 Msa0768240:three_prime_UTR
GCCACAAATGACTCCACAAG+TGG 0.574429 5_2:-33295184 None:intergenic
ACAGGGAATCAATCAACTGA+TGG 0.579224 5_2:-33295235 None:intergenic
TGTAGCATGTGGAATTGGAA+GGG 0.581070 5_2:+33290065 Msa0768240:intron
CCTTGGGAACCAATTGAGAT+GGG 0.581860 5_2:+33292788 Msa0768240:CDS
TCCTTCTATAGGAGAGTACA+AGG 0.582721 5_2:-33295521 None:intergenic
AATCAAGTCCTAAAGTTAGG+AGG 0.584220 5_2:-33295498 None:intergenic
GAGAAAGAACCTGAGGGCAA+TGG 0.584329 5_2:-33292868 None:intergenic
AACAGAACCACAAATCTGCA+AGG 0.584434 5_2:+33291503 Msa0768240:CDS
GAAATACATGGAAGAATTTG+GGG 0.585233 5_2:-33295649 None:intergenic
TTTGATAGCATGGGGTGACA+AGG 0.592047 5_2:+33292763 Msa0768240:CDS
GATGAGCTGCACTAGCTCAT+CGG 0.595522 5_2:-33292538 None:intergenic
ATCAATAGAGTATACACGGT+GGG 0.595926 5_2:-33291186 None:intergenic
ATACACGATTTCAATGTGCC+CGG 0.599756 5_2:-33295278 None:intergenic
ACAAAACTCATTTAATTGTG+CGG 0.599912 5_2:-33291288 None:intergenic
ACAGAACCACAAATCTGCAA+GGG 0.606953 5_2:+33291504 Msa0768240:CDS
ATGGGAGAGAGTGAGAGTTG+TGG 0.607464 5_2:-33289813 None:intergenic
CTCAGGAGGCCCTCTTCCGG+AGG 0.608570 5_2:+33292617 Msa0768240:CDS
TTCCCTTGATCATATAACCT+AGG 0.613581 5_2:-33295608 None:intergenic
AGAAAGACATCTACAGCACC+AGG 0.613950 5_2:-33292579 None:intergenic
ATTCTTCCATGTATTTCTAG+GGG 0.637229 5_2:+33295655 Msa0768240:three_prime_UTR
AAGAGCTCGATGTTCAAACC+AGG 0.666733 5_2:+33289945 Msa0768240:CDS
AGGGAATCAATCAACTGATG+GGG 0.671099 5_2:-33295233 None:intergenic
TATCAATATTCTGGGAACAA+CGG 0.681480 5_2:+33290101 Msa0768240:CDS
CATCAATAAAGTGACTGACA+GGG 0.682887 5_2:-33295252 None:intergenic
ACTCAAGCACATGAATAGAG+TGG 0.684226 5_2:+33289684 Msa0768240:five_prime_UTR
ATGAAAGGTCTTGCATACCA+AGG 0.685966 5_2:-33291576 None:intergenic
GAATCGTCTCCAATTTGACG+AGG 0.688025 5_2:-33291242 None:intergenic
TAAGATCAATAGAGTATACA+CGG 0.690646 5_2:-33291190 None:intergenic
CCACAAATGACTCCACAAGT+GGG 0.691468 5_2:-33295183 None:intergenic
AGGAAACTTACCTTTACTCG+GGG 0.694986 5_2:-33292648 None:intergenic
GATCAATAGAGTATACACGG+TGG 0.791426 5_2:-33291187 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTCAAGAATAAAGAAAAT+AGG - chr5_2:33290953-33290972 None:intergenic 15.0%
!! TATATCACATATTTATTGTA+AGG + chr5_2:33291059-33291078 Msa0768240:intron 15.0%
!! ATATCACATATTTATTGTAA+GGG + chr5_2:33291060-33291079 Msa0768240:intron 15.0%
!!! TAGAATAATTTAAAATAACC+TGG - chr5_2:33291401-33291420 None:intergenic 15.0%
!! TTAAGTCTATTAGAAAATAT+TGG + chr5_2:33293793-33293812 Msa0768240:intron 15.0%
!!! TTCATTTTGAATGCTTAATT+TGG - chr5_2:33289927-33289946 None:intergenic 20.0%
!! TTTATATAGAATCTTGCTAA+CGG + chr5_2:33290327-33290346 Msa0768240:intron 20.0%
!! AAATAGATCTTGAATTAACT+GGG - chr5_2:33290628-33290647 None:intergenic 20.0%
!! TAAATAGATCTTGAATTAAC+TGG - chr5_2:33290629-33290648 None:intergenic 20.0%
!!! TGTTCATTTACATGAATTTT+TGG - chr5_2:33290688-33290707 None:intergenic 20.0%
!! TTCATTTCAATTAAAAATGC+AGG + chr5_2:33291028-33291047 Msa0768240:intron 20.0%
!! TTCTTTATATGCAATTCTAT+TGG + chr5_2:33291335-33291354 Msa0768240:CDS 20.0%
!!! AGAAGTTTCATTTTATTGAA+CGG + chr5_2:33291636-33291655 Msa0768240:intron 20.0%
!! TATAACATAAACCTTGATAA+TGG - chr5_2:33291694-33291713 None:intergenic 20.0%
!! ATTATCAAGGTTTATGTTAT+AGG + chr5_2:33291693-33291712 Msa0768240:intron 20.0%
!! TTATCAAGGTTTATGTTATA+GGG + chr5_2:33291694-33291713 Msa0768240:intron 20.0%
!!! TGAGTTATTTATCAATTTTC+TGG + chr5_2:33292226-33292245 Msa0768240:intron 20.0%
!!! GAGTTATTTATCAATTTTCT+GGG + chr5_2:33292227-33292246 Msa0768240:intron 20.0%
!! TTATAAAGAATGATACACAT+TGG - chr5_2:33292430-33292449 None:intergenic 20.0%
!! TCTTTATAAATTGACAAACA+AGG + chr5_2:33292441-33292460 Msa0768240:intron 20.0%
!! AATTCGATAAAAGAATGTAA+AGG - chr5_2:33293852-33293871 None:intergenic 20.0%
!! TATATATTCATCTATTAGCT+CGG - chr5_2:33293982-33294001 None:intergenic 20.0%
!! AATTATTACTCAAATCTGAT+TGG - chr5_2:33294230-33294249 None:intergenic 20.0%
!! ATTTGAGTAATAATTACTGA+TGG + chr5_2:33294235-33294254 Msa0768240:intron 20.0%
!! ATTTATGTAAACCATCATTA+TGG - chr5_2:33294977-33294996 None:intergenic 20.0%
!! AAAACAAGAATTGAAGAAAA+AGG - chr5_2:33295004-33295023 None:intergenic 20.0%
!!! TTTTTCTTCAATTCTTGTTT+TGG + chr5_2:33295003-33295022 Msa0768240:intron 20.0%
! AACAAGTTAAAAGAATTACC+TGG - chr5_2:33289966-33289985 None:intergenic 25.0%
! TGCTACAAGTACAAAATAAA+AGG - chr5_2:33290052-33290071 None:intergenic 25.0%
! AATATTCGCTATCAATATTC+TGG + chr5_2:33290092-33290111 Msa0768240:CDS 25.0%
! ATATTCGCTATCAATATTCT+GGG + chr5_2:33290093-33290112 Msa0768240:CDS 25.0%
! TATCAGATACCGATATTAAA+TGG - chr5_2:33290203-33290222 None:intergenic 25.0%
!!! AACACTTTTTCAACTTTCAA+AGG + chr5_2:33290402-33290421 Msa0768240:intron 25.0%
! CTTTCATAATTCTTTAACCA+GGG + chr5_2:33290455-33290474 Msa0768240:intron 25.0%
!!! CATTTACATGAATTTTTGGA+CGG - chr5_2:33290684-33290703 None:intergenic 25.0%
! ATTAACCACTTGAGTTTAAT+TGG - chr5_2:33290728-33290747 None:intergenic 25.0%
!!! TTGAATTTTTTCATGAGTAG+AGG + chr5_2:33290966-33290985 Msa0768240:intron 25.0%
! TATTTATTGTAAGGGTCTTA+TGG + chr5_2:33291068-33291087 Msa0768240:intron 25.0%
! TAAGATCAATAGAGTATACA+CGG - chr5_2:33291193-33291212 None:intergenic 25.0%
! GTATACTCTATTGATCTTAT+TGG + chr5_2:33291194-33291213 Msa0768240:CDS 25.0%
! TCTATTGATCTTATTGGATA+TGG + chr5_2:33291200-33291219 Msa0768240:CDS 25.0%
! ACAAAACTCATTTAATTGTG+CGG - chr5_2:33291291-33291310 None:intergenic 25.0%
! TTTATATGCAATTCTATTGG+AGG + chr5_2:33291338-33291357 Msa0768240:CDS 25.0%
! TTGATATTTAATTACTGACC+AGG + chr5_2:33291380-33291399 Msa0768240:intron 25.0%
!!! TTCTGATATTATTTTTGTGC+AGG + chr5_2:33291456-33291475 Msa0768240:intron 25.0%
! TACGCAAAGATATATTAAGA+AGG - chr5_2:33291536-33291555 None:intergenic 25.0%
! TAGTAATAGGTCTTTATTCT+TGG - chr5_2:33292365-33292384 None:intergenic 25.0%
! TATTGTTAGGACTTAGTAAT+AGG - chr5_2:33292378-33292397 None:intergenic 25.0%
! CATAAGTGTTTGATATTGTT+AGG - chr5_2:33292391-33292410 None:intergenic 25.0%
! TTCACAATTAGTATAGTTTC+AGG - chr5_2:33292476-33292495 None:intergenic 25.0%
! ATATCTATAATGCAGTTCTA+TGG - chr5_2:33293088-33293107 None:intergenic 25.0%
!!! CAATTTTGATCAATCCTTTT+TGG - chr5_2:33293258-33293277 None:intergenic 25.0%
!! AATTGAAATGATAATGCACA+AGG + chr5_2:33293273-33293292 Msa0768240:intron 25.0%
! CTGATAATAAGGATATACAT+TGG - chr5_2:33293318-33293337 None:intergenic 25.0%
! GATATGTAGAACTGATAATA+AGG - chr5_2:33293329-33293348 None:intergenic 25.0%
! ATATATTCATCTATTAGCTC+GGG - chr5_2:33293981-33294000 None:intergenic 25.0%
! TTTCTTATTAACCAACAACA+AGG - chr5_2:33294166-33294185 None:intergenic 25.0%
! AAGTACTTAATGATCTCTAT+CGG + chr5_2:33294278-33294297 Msa0768240:intron 25.0%
! TGATATCTTAGATCTATCTT+TGG + chr5_2:33294379-33294398 Msa0768240:intron 25.0%
! GATATCTTAGATCTATCTTT+GGG + chr5_2:33294380-33294399 Msa0768240:intron 25.0%
! ATTACCTTATAAAATCCCAT+GGG + chr5_2:33294483-33294502 Msa0768240:intron 25.0%
!! ATAGATGACAGATTCATTTT+TGG - chr5_2:33294606-33294625 None:intergenic 25.0%
! ATGAATCTGTCATCTATATA+CGG + chr5_2:33294609-33294628 Msa0768240:intron 25.0%
! ATTACTCTCATAGTCAAAAT+AGG - chr5_2:33294801-33294820 None:intergenic 25.0%
! TTATATCTGATTGGTATAAG+AGG - chr5_2:33294847-33294866 None:intergenic 25.0%
!!! AAAACCACTTTTAATGTGAA+CGG - chr5_2:33294874-33294893 None:intergenic 25.0%
! TCAATATTACTCCATAATGA+TGG + chr5_2:33294963-33294982 Msa0768240:intron 25.0%
! ATATGTGTATTGTACATCAT+TGG + chr5_2:33295459-33295478 Msa0768240:three_prime_UTR 25.0%
!! ATTTTATTCCTCCTAACTTT+AGG + chr5_2:33295490-33295509 Msa0768240:three_prime_UTR 25.0%
! TACGATGTAGAAATGTTAAA+GGG - chr5_2:33295581-33295600 None:intergenic 25.0%
! ATACGATGTAGAAATGTTAA+AGG - chr5_2:33295582-33295601 None:intergenic 25.0%
! TTATATGATCAAGGGAATTA+AGG + chr5_2:33295614-33295633 Msa0768240:three_prime_UTR 25.0%
! AGAAATACATGGAAGAATTT+GGG - chr5_2:33295653-33295672 None:intergenic 25.0%
! TAGAAATACATGGAAGAATT+TGG - chr5_2:33295654-33295673 None:intergenic 25.0%
! AAATTCTTCCATGTATTTCT+AGG + chr5_2:33295653-33295672 Msa0768240:three_prime_UTR 25.0%
!! AATTCTTCCATGTATTTCTA+GGG + chr5_2:33295654-33295673 Msa0768240:three_prime_UTR 25.0%
!! AATCAGATAGTGTTTTTACG+TGG + chr5_2:33290001-33290020 Msa0768240:intron 30.0%
!! ATAGTGTTTTTACGTGGAAT+TGG + chr5_2:33290007-33290026 Msa0768240:intron 30.0%
! TATTTTGTACTTGTAGCATG+TGG + chr5_2:33290054-33290073 Msa0768240:intron 30.0%
! TATCAATATTCTGGGAACAA+CGG + chr5_2:33290101-33290120 Msa0768240:CDS 30.0%
TTCTTAATCTCATTATTCGC+CGG + chr5_2:33290174-33290193 Msa0768240:intron 30.0%
! TACAATTCCGTCTCTATTTT+TGG + chr5_2:33290221-33290240 Msa0768240:intron 30.0%
AGATACTCCAAAAATAGAGA+CGG - chr5_2:33290231-33290250 None:intergenic 30.0%
!!! TCTCTATTTTTGGAGTATCT+CGG + chr5_2:33290231-33290250 Msa0768240:intron 30.0%
CCTGGTTAAAGAATTATGAA+AGG - chr5_2:33290457-33290476 None:intergenic 30.0%
CCTTTCATAATTCTTTAACC+AGG + chr5_2:33290454-33290473 Msa0768240:intron 30.0%
! GAATAATCTAAAACAACCCA+TGG + chr5_2:33290513-33290532 Msa0768240:intron 30.0%
TTTACAAGTGATTGTGTTTG+AGG + chr5_2:33290574-33290593 Msa0768240:intron 30.0%
AGTAAAAAATTGTTCCACTC+TGG - chr5_2:33290794-33290813 None:intergenic 30.0%
!!! GAGTGGAACAATTTTTTACT+AGG + chr5_2:33290794-33290813 Msa0768240:intron 30.0%
! CTTTTACACGTTTGATACAT+GGG + chr5_2:33291265-33291284 Msa0768240:CDS 30.0%
! AGTTTGAGTTATTCGTTGTT+CGG - chr5_2:33292113-33292132 None:intergenic 30.0%
AACGAATAACTCAAACTTGA+TGG + chr5_2:33292116-33292135 Msa0768240:intron 30.0%
TAATAGGTCTTTATTCTTGG+AGG - chr5_2:33292362-33292381 None:intergenic 30.0%
! CTTGAGTTTATTTGTTACTC+AGG + chr5_2:33292600-33292619 Msa0768240:CDS 30.0%
! ATTTCTCTTATTTCAGTGTC+CGG + chr5_2:33292739-33292758 Msa0768240:intron 30.0%
TAATTTCTTCCCATCTCAAT+TGG - chr5_2:33292800-33292819 None:intergenic 30.0%
ATTGAGATGGGAAGAAATTA+CGG + chr5_2:33292800-33292819 Msa0768240:CDS 30.0%
!!! TTACGGAAATTTTGATTCAG+TGG + chr5_2:33292817-33292836 Msa0768240:CDS 30.0%
TTCATTGTTCTTCCAAATGT+TGG + chr5_2:33292845-33292864 Msa0768240:CDS 30.0%
ATATGTAGCAATAGGAAGTA+AGG + chr5_2:33292979-33292998 Msa0768240:intron 30.0%
AATAGGAAGTAAGGATGTTA+AGG + chr5_2:33292988-33293007 Msa0768240:intron 30.0%
ATAGGAAGTAAGGATGTTAA+GGG + chr5_2:33292989-33293008 Msa0768240:intron 30.0%
ACAACAGTACATGCATATTA+TGG + chr5_2:33293198-33293217 Msa0768240:intron 30.0%
CTACTATGTACAAACCAAAA+AGG + chr5_2:33293241-33293260 Msa0768240:intron 30.0%
GAAAACAAGTTCATCTATAG+AGG - chr5_2:33293509-33293528 None:intergenic 30.0%
! TTATACGAGCTGTTTACTTT+TGG + chr5_2:33293661-33293680 Msa0768240:intron 30.0%
!! TATACGAGCTGTTTACTTTT+GGG + chr5_2:33293662-33293681 Msa0768240:intron 30.0%
GATGTTCATAGTTGAACATA+AGG - chr5_2:33293750-33293769 None:intergenic 30.0%
! CGAATTAACTAGTATTGAGT+TGG + chr5_2:33293866-33293885 Msa0768240:intron 30.0%
TATTAACCAACAACAAGGAT+TGG - chr5_2:33294161-33294180 None:intergenic 30.0%
GATAGAGATCATTAAGTACT+TGG - chr5_2:33294279-33294298 None:intergenic 30.0%
TAAGATATCAACCATCTTGA+GGG - chr5_2:33294369-33294388 None:intergenic 30.0%
GAATGTTTACAAATAGTGCA+AGG - chr5_2:33294446-33294465 None:intergenic 30.0%
! GGGATTTTATAAGGTAATCA+CGG - chr5_2:33294481-33294500 None:intergenic 30.0%
GATTACCTTATAAAATCCCA+TGG + chr5_2:33294482-33294501 Msa0768240:intron 30.0%
! GCAGATGTATCTAGAATATA+GGG - chr5_2:33294548-33294567 None:intergenic 30.0%
!! TTAAACGATCAAGGCATTTT+TGG - chr5_2:33294689-33294708 None:intergenic 30.0%
ACAAAAATCAGTAGCAGATA+GGG - chr5_2:33294730-33294749 None:intergenic 30.0%
AACAAAAATCAGTAGCAGAT+AGG - chr5_2:33294731-33294750 None:intergenic 30.0%
! CATTAAAAGTGGTTTTCACT+TGG + chr5_2:33294878-33294897 Msa0768240:intron 30.0%
GAAGCTTATTTCACTATCAA+TGG - chr5_2:33294945-33294964 None:intergenic 30.0%
!!! CTTCAATTCTTGTTTTGGTA+TGG + chr5_2:33295008-33295027 Msa0768240:intron 30.0%
TACAAGAAAAAACCCACTAT+TGG - chr5_2:33295323-33295342 None:intergenic 30.0%
GAAATACATGGAAGAATTTG+GGG - chr5_2:33295652-33295671 None:intergenic 30.0%
!! ATTCTTCCATGTATTTCTAG+GGG + chr5_2:33295655-33295674 Msa0768240:three_prime_UTR 30.0%
!!! AGAACGAATTTTCGAGTAAG+GGG - chr5_2:33289852-33289871 None:intergenic 35.0%
!!! GAGAACGAATTTTCGAGTAA+GGG - chr5_2:33289853-33289872 None:intergenic 35.0%
!!! TGAGAACGAATTTTCGAGTA+AGG - chr5_2:33289854-33289873 None:intergenic 35.0%
TACCGATATTAAATGGACAC+CGG - chr5_2:33290196-33290215 None:intergenic 35.0%
ACAACTTATGACATGTCCAT+GGG - chr5_2:33290532-33290551 None:intergenic 35.0%
AACAACTTATGACATGTCCA+TGG - chr5_2:33290533-33290552 None:intergenic 35.0%
ACCAACCAATTAAACTCAAG+TGG + chr5_2:33290720-33290739 Msa0768240:intron 35.0%
ACCACTTGAGTTTAATTGGT+TGG - chr5_2:33290724-33290743 None:intergenic 35.0%
AGTAAATGCTCCAGTCATTA+TGG - chr5_2:33290865-33290884 None:intergenic 35.0%
ATCAATAGAGTATACACGGT+GGG - chr5_2:33291189-33291208 None:intergenic 35.0%
AAACCAAATCCTCGTCAAAT+TGG + chr5_2:33291233-33291252 Msa0768240:CDS 35.0%
CCATGTATCAAACGTGTAAA+AGG - chr5_2:33291267-33291286 None:intergenic 35.0%
! CCTTTTACACGTTTGATACA+TGG + chr5_2:33291264-33291283 Msa0768240:CDS 35.0%
! GTTTTGTCTTGATGTCGTTA+AGG + chr5_2:33291304-33291323 Msa0768240:CDS 35.0%
!! TATTTTTGTGCAGGAGTTGT+AGG + chr5_2:33291465-33291484 Msa0768240:intron 35.0%
TTCATATAAAGAAGCAGCCT+TGG + chr5_2:33291559-33291578 Msa0768240:CDS 35.0%
!! CTTTGGAATGAACTGATGAA+AGG - chr5_2:33291594-33291613 None:intergenic 35.0%
GTTCATTCCAAAGATTGCTT+AGG + chr5_2:33291601-33291620 Msa0768240:CDS 35.0%
ATCTGTACCTAAGCAATCTT+TGG - chr5_2:33291611-33291630 None:intergenic 35.0%
TTCATGTTCAAACCTTAAGC+AGG + chr5_2:33291661-33291680 Msa0768240:intron 35.0%
TCATGTTCAAACCTTAAGCA+GGG + chr5_2:33291662-33291681 Msa0768240:intron 35.0%
TGTTATAGGGATACTTCTGT+TGG + chr5_2:33291707-33291726 Msa0768240:intron 35.0%
CTGGCATAAAATGTTCTTCA+CGG - chr5_2:33291768-33291787 None:intergenic 35.0%
!!! TTCAGTTTTGAGCATCAACA+AGG - chr5_2:33291897-33291916 None:intergenic 35.0%
! CATTTTTCTCTGCTTATTGC+AGG - chr5_2:33291920-33291939 None:intergenic 35.0%
GAAAAATGCAAACACTCTGA+CGG + chr5_2:33291932-33291951 Msa0768240:intron 35.0%
AAAAATGCAAACACTCTGAC+GGG + chr5_2:33291933-33291952 Msa0768240:intron 35.0%
AAGTGATTAGATGCTGTTGA+GGG - chr5_2:33291974-33291993 None:intergenic 35.0%
TAAGTGATTAGATGCTGTTG+AGG - chr5_2:33291975-33291994 None:intergenic 35.0%
TGCTTGACATCAATAGAGTA+AGG - chr5_2:33292006-33292025 None:intergenic 35.0%
TCTATTGATGTCAAGCACTT+GGG + chr5_2:33292009-33292028 Msa0768240:intron 35.0%
!!! CTTCGATAGCTAGCTTTTAA+GGG - chr5_2:33292042-33292061 None:intergenic 35.0%
!!! TCTTCGATAGCTAGCTTTTA+AGG - chr5_2:33292043-33292062 None:intergenic 35.0%
! GTTTGAGTTATTCGTTGTTC+GGG - chr5_2:33292112-33292131 None:intergenic 35.0%
TTCTAATGTAACTCCTCTTC+TGG - chr5_2:33292262-33292281 None:intergenic 35.0%
TTCCTAAACAAATGCTTCCT+AGG + chr5_2:33292301-33292320 Msa0768240:intron 35.0%
! GAGTTTATTTGTTACTCAGG+AGG + chr5_2:33292603-33292622 Msa0768240:CDS 35.0%
ATAGAAAGAAAGCAAGTGCA+TGG - chr5_2:33292899-33292918 None:intergenic 35.0%
TCACACGTATATGTAGCAAT+AGG + chr5_2:33292971-33292990 Msa0768240:intron 35.0%
TTCAACACTAAGAAAGTAGC+AGG + chr5_2:33293057-33293076 Msa0768240:intron 35.0%
AGAGTAAGAGTAATCATCTG+TGG + chr5_2:33293142-33293161 Msa0768240:intron 35.0%
CATGAGTTCTACATCTTTGT+AGG + chr5_2:33293171-33293190 Msa0768240:intron 35.0%
GTAGTTATGACTATTGTGTG+TGG - chr5_2:33293225-33293244 None:intergenic 35.0%
GGATATACATTGGCAATTAG+AGG - chr5_2:33293308-33293327 None:intergenic 35.0%
CATAACCATATGTACGTTAG+AGG + chr5_2:33293378-33293397 Msa0768240:intron 35.0%
AAAAAGTTTGACACTGAAGC+AGG - chr5_2:33293419-33293438 None:intergenic 35.0%
GGAGATCTGAATCATTTCTT+AGG + chr5_2:33293587-33293606 Msa0768240:intron 35.0%
TCAACTATGAACATCGTGTT+AGG + chr5_2:33293755-33293774 Msa0768240:intron 35.0%
TGGAACTCAATGCAAATTGA+GGG - chr5_2:33294014-33294033 None:intergenic 35.0%
! TTGACTCTTTTTACACACAC+TGG - chr5_2:33294034-33294053 None:intergenic 35.0%
AGTCAAGCATCTTCCAAAAA+GGG + chr5_2:33294048-33294067 Msa0768240:intron 35.0%
TCTTCCAAAAAGGGTTAACA+TGG + chr5_2:33294057-33294076 Msa0768240:intron 35.0%
GAATTCTATTGCGAACACTT+TGG - chr5_2:33294110-33294129 None:intergenic 35.0%
CTAAGATATCAACCATCTTG+AGG - chr5_2:33294370-33294389 None:intergenic 35.0%
ATCTATCTTTGGGTCATGTT+GGG + chr5_2:33294390-33294409 Msa0768240:intron 35.0%
! GTAATCACGGAACATTTTAG+AGG - chr5_2:33294468-33294487 None:intergenic 35.0%
ATGAAAGGAATGACTTCTGA+GGG - chr5_2:33294519-33294538 None:intergenic 35.0%
AATATAGGGATGTGCATGAA+AGG - chr5_2:33294534-33294553 None:intergenic 35.0%
! GGCAGATGTATCTAGAATAT+AGG - chr5_2:33294549-33294568 None:intergenic 35.0%
ACTATCTGTATGACATGGTA+GGG - chr5_2:33294574-33294593 None:intergenic 35.0%
TACTATCTGTATGACATGGT+AGG - chr5_2:33294575-33294594 None:intergenic 35.0%
ACTCTACTATCTGTATGACA+TGG - chr5_2:33294579-33294598 None:intergenic 35.0%
AATCTGTCATCTATATACGG+AGG + chr5_2:33294612-33294631 Msa0768240:intron 35.0%
AACGGTCACTTATATCTGAT+TGG - chr5_2:33294856-33294875 None:intergenic 35.0%
GAACCTACTGAAACATTAAG+TGG + chr5_2:33295061-33295080 Msa0768240:intron 35.0%
TGACCACTTAATGTTTCAGT+AGG - chr5_2:33295067-33295086 None:intergenic 35.0%
CATCAATAAAGTGACTGACA+GGG - chr5_2:33295255-33295274 None:intergenic 35.0%
AAGAAAAAACCCACTATTGG+TGG - chr5_2:33295320-33295339 None:intergenic 35.0%
TTCCATCGAAAGATTCACTT+TGG + chr5_2:33295367-33295386 Msa0768240:three_prime_UTR 35.0%
TTCCAAAGTGAATCTTTCGA+TGG - chr5_2:33295372-33295391 None:intergenic 35.0%
ATCGAAAGATTCACTTTGGA+AGG + chr5_2:33295371-33295390 Msa0768240:three_prime_UTR 35.0%
! TCACTTTGGAAGGAAAAGTA+AGG + chr5_2:33295381-33295400 Msa0768240:three_prime_UTR 35.0%
AATCAAGTCCTAAAGTTAGG+AGG - chr5_2:33295501-33295520 None:intergenic 35.0%
AGGAATCAAGTCCTAAAGTT+AGG - chr5_2:33295504-33295523 None:intergenic 35.0%
AGTCCTAGGTTATATGATCA+AGG + chr5_2:33295605-33295624 Msa0768240:three_prime_UTR 35.0%
GTCCTAGGTTATATGATCAA+GGG + chr5_2:33295606-33295625 Msa0768240:three_prime_UTR 35.0%
TTCCCTTGATCATATAACCT+AGG - chr5_2:33295611-33295630 None:intergenic 35.0%
TTTCTACCCCTAGAAATACA+TGG - chr5_2:33295664-33295683 None:intergenic 35.0%
ACTCAAGCACATGAATAGAG+TGG + chr5_2:33289684-33289703 Msa0768240:five_prime_UTR 40.0%
GCATTGTTGCAGTGAATCAA+TGG + chr5_2:33289739-33289758 Msa0768240:five_prime_UTR 40.0%
GGAACTGAAACGAATAGAGT+TGG + chr5_2:33289760-33289779 Msa0768240:five_prime_UTR 40.0%
GTACTTGTAGCATGTGGAAT+TGG + chr5_2:33290060-33290079 Msa0768240:intron 40.0%
TTGTAGCATGTGGAATTGGA+AGG + chr5_2:33290064-33290083 Msa0768240:intron 40.0%
TGTAGCATGTGGAATTGGAA+GGG + chr5_2:33290065-33290084 Msa0768240:intron 40.0%
!!! TTAGTTTTGGTGCACGGTTT+CGG + chr5_2:33290131-33290150 Msa0768240:intron 40.0%
CTTGCTAACGGCATTAGTTA+AGG + chr5_2:33290339-33290358 Msa0768240:intron 40.0%
! ACTTGTTAGCTTCGCTATCT+AGG + chr5_2:33290479-33290498 Msa0768240:intron 40.0%
TTCTCCAGAACAATTTGTCC+GGG - chr5_2:33290759-33290778 None:intergenic 40.0%
GTTCTCCAGAACAATTTGTC+CGG - chr5_2:33290760-33290779 None:intergenic 40.0%
GCTCCAGTCATTATGGAAAT+GGG - chr5_2:33290858-33290877 None:intergenic 40.0%
TGCTCCAGTCATTATGGAAA+TGG - chr5_2:33290859-33290878 None:intergenic 40.0%
! ATTGTAAGGGTCTTATGGCT+AGG + chr5_2:33291073-33291092 Msa0768240:intron 40.0%
GATCAATAGAGTATACACGG+TGG - chr5_2:33291190-33291209 None:intergenic 40.0%
TCTCCAATTTGACGAGGATT+TGG - chr5_2:33291239-33291258 None:intergenic 40.0%
AACAGAACCACAAATCTGCA+AGG + chr5_2:33291503-33291522 Msa0768240:CDS 40.0%
ACAGAACCACAAATCTGCAA+GGG + chr5_2:33291504-33291523 Msa0768240:CDS 40.0%
AGAATTCCCTTGCAGATTTG+TGG - chr5_2:33291513-33291532 None:intergenic 40.0%
ATGAAAGGTCTTGCATACCA+AGG - chr5_2:33291579-33291598 None:intergenic 40.0%
CATGTTCAAACCTTAAGCAG+GGG + chr5_2:33291663-33291682 Msa0768240:intron 40.0%
AATGGTAAATCCCCTGCTTA+AGG - chr5_2:33291676-33291695 None:intergenic 40.0%
CAGGGGATTTACCATTATCA+AGG + chr5_2:33291680-33291699 Msa0768240:intron 40.0%
! CGTGAAGAACATTTTATGCC+AGG + chr5_2:33291766-33291785 Msa0768240:CDS 40.0%
TGTTAAGCTAGAAGGATACC+TGG - chr5_2:33291787-33291806 None:intergenic 40.0%
CTCTATTGATGTCAAGCACT+TGG + chr5_2:33292008-33292027 Msa0768240:intron 40.0%
CTATTGATGTCAAGCACTTG+GGG + chr5_2:33292010-33292029 Msa0768240:intron 40.0%
!!! GATAGCTAGCTTTTAAGGGA+GGG - chr5_2:33292038-33292057 None:intergenic 40.0%
!! TGTTTAGGAAGCATTGTAGC+TGG - chr5_2:33292291-33292310 None:intergenic 40.0%
AAAAGGCCACAGCCTTAATT+GGG - chr5_2:33292327-33292346 None:intergenic 40.0%
TCTTTATTCTTGGAGGAAGG+TGG - chr5_2:33292355-33292374 None:intergenic 40.0%
AGGTCTTTATTCTTGGAGGA+AGG - chr5_2:33292358-33292377 None:intergenic 40.0%
AGAATGATACACATTGGAGC+TGG - chr5_2:33292424-33292443 None:intergenic 40.0%
AGGAAACTTACCTTTACTCG+GGG - chr5_2:33292651-33292670 None:intergenic 40.0%
GAGGAAACTTACCTTTACTC+GGG - chr5_2:33292652-33292671 None:intergenic 40.0%
GGAGGAAACTTACCTTTACT+CGG - chr5_2:33292653-33292672 None:intergenic 40.0%
AACTTCCCACTTCCTCATAT+AGG - chr5_2:33292679-33292698 None:intergenic 40.0%
!! CTACATATCTAGTCTTGCGT+TGG + chr5_2:33293340-33293359 Msa0768240:intron 40.0%
GATTGCCTCTAACGTACATA+TGG - chr5_2:33293386-33293405 None:intergenic 40.0%
! CAAAGCATTCAGATGTCAAG+CGG - chr5_2:33293531-33293550 None:intergenic 40.0%
GCTTGACATCTGAATGCTTT+GGG + chr5_2:33293530-33293549 Msa0768240:intron 40.0%
!! TGCTTTGGGTATTGATCTGA+AGG + chr5_2:33293544-33293563 Msa0768240:intron 40.0%
!! GCTTTGGGTATTGATCTGAA+GGG + chr5_2:33293545-33293564 Msa0768240:intron 40.0%
GGAGATCAACTTGACAAGAA+GGG + chr5_2:33293566-33293585 Msa0768240:intron 40.0%
ATCGTGTTAGGAATGTCAAC+AGG + chr5_2:33293767-33293786 Msa0768240:intron 40.0%
TGAATGCACCAACATTTGTC+TGG + chr5_2:33293898-33293917 Msa0768240:intron 40.0%
GAATGCACCAACATTTGTCT+GGG + chr5_2:33293899-33293918 Msa0768240:intron 40.0%
AATGCACCAACATTTGTCTG+GGG + chr5_2:33293900-33293919 Msa0768240:intron 40.0%
CTGGAACTCAATGCAAATTG+AGG - chr5_2:33294015-33294034 None:intergenic 40.0%
GAGTCAAGCATCTTCCAAAA+AGG + chr5_2:33294047-33294066 Msa0768240:intron 40.0%
! AGCACCATGTTAACCCTTTT+TGG - chr5_2:33294064-33294083 None:intergenic 40.0%
!! CACTTTGGAATAGTCATGGT+GGG - chr5_2:33294095-33294114 None:intergenic 40.0%
!! ACACTTTGGAATAGTCATGG+TGG - chr5_2:33294096-33294115 None:intergenic 40.0%
!! CGAACACTTTGGAATAGTCA+TGG - chr5_2:33294099-33294118 None:intergenic 40.0%
GTCGCAAGCTAGTATATTTG+TGG - chr5_2:33294135-33294154 None:intergenic 40.0%
AACCAACAACAAGGATTGGA+AGG - chr5_2:33294157-33294176 None:intergenic 40.0%
GATCTATCTTTGGGTCATGT+TGG + chr5_2:33294389-33294408 Msa0768240:intron 40.0%
! GAGTCCCATGGGATTTTATA+AGG - chr5_2:33294490-33294509 None:intergenic 40.0%
TGAAAGGAATGACTTCTGAG+GGG - chr5_2:33294518-33294537 None:intergenic 40.0%
CATGAAAGGAATGACTTCTG+AGG - chr5_2:33294520-33294539 None:intergenic 40.0%
GAGCAACACTTAAACGATCA+AGG - chr5_2:33294698-33294717 None:intergenic 40.0%
! TGATCGTTTAAGTGTTGCTC+AGG + chr5_2:33294698-33294717 Msa0768240:intron 40.0%
GTGACCGTTCACATTAAAAG+TGG + chr5_2:33294867-33294886 Msa0768240:intron 40.0%
GTTAACTGTCCACTTCATGA+AGG + chr5_2:33295138-33295157 Msa0768240:intron 40.0%
TGGGGTAAGAGATGAAGATT+TGG - chr5_2:33295218-33295237 None:intergenic 40.0%
AGGGAATCAATCAACTGATG+GGG - chr5_2:33295236-33295255 None:intergenic 40.0%
CAGGGAATCAATCAACTGAT+GGG - chr5_2:33295237-33295256 None:intergenic 40.0%
ACAGGGAATCAATCAACTGA+TGG - chr5_2:33295238-33295257 None:intergenic 40.0%
GCATCAATAAAGTGACTGAC+AGG - chr5_2:33295256-33295275 None:intergenic 40.0%
! AGTCACTTTATTGATGCTGC+CGG + chr5_2:33295259-33295278 Msa0768240:three_prime_UTR 40.0%
ATACACGATTTCAATGTGCC+CGG - chr5_2:33295281-33295300 None:intergenic 40.0%
TCATTTGCTTCCACCAATAG+TGG + chr5_2:33295307-33295326 Msa0768240:three_prime_UTR 40.0%
CATTTGCTTCCACCAATAGT+GGG + chr5_2:33295308-33295327 Msa0768240:three_prime_UTR 40.0%
TCCTTGTACTCTCCTATAGA+AGG + chr5_2:33295520-33295539 Msa0768240:three_prime_UTR 40.0%
! TCCTTCTATAGGAGAGTACA+AGG - chr5_2:33295524-33295543 None:intergenic 40.0%
CTACATCGTATTAGAGTCCT+AGG + chr5_2:33295591-33295610 Msa0768240:three_prime_UTR 40.0%
GGAAGAATTTGGGGAATAGA+GGG - chr5_2:33295643-33295662 None:intergenic 40.0%
TGGAAGAATTTGGGGAATAG+AGG - chr5_2:33295644-33295663 None:intergenic 40.0%
AAGAGCTCGATGTTCAAACC+AGG + chr5_2:33289945-33289964 Msa0768240:CDS 45.0%
!! CAACGGTCCTGCATTAGTTT+TGG + chr5_2:33290118-33290137 Msa0768240:CDS 45.0%
!!! CCTGCATTAGTTTTGGTGCA+CGG + chr5_2:33290125-33290144 Msa0768240:CDS 45.0%
CGCCGGTGTCCATTTAATAT+CGG + chr5_2:33290191-33290210 Msa0768240:intron 45.0%
AGTGGTTAATGAGATCCACC+CGG + chr5_2:33290738-33290757 Msa0768240:intron 45.0%
!! TTCCACTCTGGAATCGAACT+CGG - chr5_2:33290782-33290801 None:intergenic 45.0%
GTCATTATGGAAATGGGTCC+TGG - chr5_2:33290852-33290871 None:intergenic 45.0%
GGACCCATTTCCATAATGAC+TGG + chr5_2:33290852-33290871 Msa0768240:intron 45.0%
GTCTTATGGCTAGGTCTGTT+TGG + chr5_2:33291082-33291101 Msa0768240:intron 45.0%
CACTTCATTGCAGTGATCAC+TGG + chr5_2:33291135-33291154 Msa0768240:intron 45.0%
TTCATTGCAGTGATCACTGG+AGG + chr5_2:33291138-33291157 Msa0768240:intron 45.0%
! ATACACGGTGGGATTTTGCT+AGG - chr5_2:33291178-33291197 None:intergenic 45.0%
GAATCGTCTCCAATTTGACG+AGG - chr5_2:33291245-33291264 None:intergenic 45.0%
TAGCTGCGTGTTAAGCTAGA+AGG - chr5_2:33291795-33291814 None:intergenic 45.0%
!!! CGATAGCTAGCTTTTAAGGG+AGG - chr5_2:33292039-33292058 None:intergenic 45.0%
TGCTCGGGCAAGTATTTAAG+AGG - chr5_2:33292078-33292097 None:intergenic 45.0%
GGAAAGGGAAACCTATGGAA+GGG - chr5_2:33292146-33292165 None:intergenic 45.0%
TGGGAATGAACATCCAGAAG+AGG + chr5_2:33292246-33292265 Msa0768240:intron 45.0%
!! GGCCTAGGAAGCATTTGTTT+AGG - chr5_2:33292306-33292325 None:intergenic 45.0%
ATGCTTCCTAGGCCCAATTA+AGG + chr5_2:33292312-33292331 Msa0768240:intron 45.0%
GAAAAGGCCACAGCCTTAAT+TGG - chr5_2:33292328-33292347 None:intergenic 45.0%
TTATTCTTGGAGGAAGGTGG+AGG - chr5_2:33292352-33292371 None:intergenic 45.0%
AGAAAGACATCTACAGCACC+AGG - chr5_2:33292582-33292601 None:intergenic 45.0%
!! AGTGTCCGGTTTTGATAGCA+TGG + chr5_2:33292753-33292772 Msa0768240:intron 45.0%
!! GTGTCCGGTTTTGATAGCAT+GGG + chr5_2:33292754-33292773 Msa0768240:intron 45.0%
!! TGTCCGGTTTTGATAGCATG+GGG + chr5_2:33292755-33292774 Msa0768240:CDS 45.0%
TCACCCCATGCTATCAAAAC+CGG - chr5_2:33292761-33292780 None:intergenic 45.0%
! TTTGATAGCATGGGGTGACA+AGG + chr5_2:33292763-33292782 Msa0768240:CDS 45.0%
TCCTTGGGAACCAATTGAGA+TGG + chr5_2:33292787-33292806 Msa0768240:CDS 45.0%
CCTTGGGAACCAATTGAGAT+GGG + chr5_2:33292788-33292807 Msa0768240:CDS 45.0%
GCATGAGAGAAAGAACCTGA+GGG - chr5_2:33292877-33292896 None:intergenic 45.0%
AGTAAGGATGTTAAGGGAGC+AGG + chr5_2:33292995-33293014 Msa0768240:intron 45.0%
CGCTTGACATCTGAATGCTT+TGG + chr5_2:33293529-33293548 Msa0768240:intron 45.0%
GGGAGATCAACTTGACAAGA+AGG + chr5_2:33293565-33293584 Msa0768240:intron 45.0%
AAGGATCACTGATGCGTGAT+TGG - chr5_2:33293731-33293750 None:intergenic 45.0%
!! AAGTGACGAGCTTTGAGCTA+AGG + chr5_2:33293820-33293839 Msa0768240:intron 45.0%
ATGCACCAACATTTGTCTGG+GGG + chr5_2:33293901-33293920 Msa0768240:intron 45.0%
AATTCCCCCCAGACAAATGT+TGG - chr5_2:33293909-33293928 None:intergenic 45.0%
! AGGGTTAACATGGTGCTAGA+CGG + chr5_2:33294067-33294086 Msa0768240:intron 45.0%
! GACCTTCCAATCCTTGTTGT+TGG + chr5_2:33294152-33294171 Msa0768240:intron 45.0%
! CTGATTGGTCCATAACGACT+GGG - chr5_2:33294215-33294234 None:intergenic 45.0%
! TCTGATTGGTCCATAACGAC+TGG - chr5_2:33294216-33294235 None:intergenic 45.0%
AACCATCTTGAGGGTGATAC+AGG - chr5_2:33294360-33294379 None:intergenic 45.0%
!! GATTGGTATAAGAGGCACTC+TGG - chr5_2:33294839-33294858 None:intergenic 45.0%
GTGCTTCATCCTTCATGAAG+TGG - chr5_2:33295150-33295169 None:intergenic 45.0%
! ACAAGTGGGTTCACAAGTTG+AGG - chr5_2:33295172-33295191 None:intergenic 45.0%
TCAACTTGTGAACCCACTTG+TGG + chr5_2:33295171-33295190 Msa0768240:CDS 45.0%
CCACAAATGACTCCACAAGT+GGG - chr5_2:33295186-33295205 None:intergenic 45.0%
TTGTGGAGTCATTTGTGGCA+CGG + chr5_2:33295188-33295207 Msa0768240:CDS 45.0%
! GTCACTTTATTGATGCTGCC+GGG + chr5_2:33295260-33295279 Msa0768240:three_prime_UTR 45.0%
TGAAACGCTGCTCCTTCTAT+AGG - chr5_2:33295535-33295554 None:intergenic 45.0%
!!! TGTTATTTTTTTTATTTTTT+TGG - chr5_2:33290888-33290907 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG + chr5_2:33293437-33293456 Msa0768240:intron 5.0%
ATGGGAGAGAGTGAGAGTTG+TGG - chr5_2:33289816-33289835 None:intergenic 50.0%
AGGGGATAGTGTTCGAGGAT+GGG - chr5_2:33289834-33289853 None:intergenic 50.0%
AAGGGGATAGTGTTCGAGGA+TGG - chr5_2:33289835-33289854 None:intergenic 50.0%
GAGTAAGGGGATAGTGTTCG+AGG - chr5_2:33289839-33289858 None:intergenic 50.0%
CCGTGCACCAAAACTAATGC+AGG - chr5_2:33290128-33290147 None:intergenic 50.0%
CGCTATCTAGGAGAGCTTAG+AGG + chr5_2:33290491-33290510 Msa0768240:intron 50.0%
TCCACCCGGACAAATTGTTC+TGG + chr5_2:33290752-33290771 Msa0768240:intron 50.0%
TCCAGAACAATTTGTCCGGG+TGG - chr5_2:33290756-33290775 None:intergenic 50.0%
AACCGAGTTCGATTCCAGAG+TGG + chr5_2:33290777-33290796 Msa0768240:intron 50.0%
TGGTAATCCGGAGTTTGGTC+GGG - chr5_2:33290832-33290851 None:intergenic 50.0%
CTGGTAATCCGGAGTTTGGT+CGG - chr5_2:33290833-33290852 None:intergenic 50.0%
GGAAATGGGTCCTGGTAATC+CGG - chr5_2:33290844-33290863 None:intergenic 50.0%
TGCAGGAGTTGTAGGTCTTC+AGG + chr5_2:33291473-33291492 Msa0768240:intron 50.0%
TCGGGCAAGTATGAGATGCT+CGG - chr5_2:33292094-33292113 None:intergenic 50.0%
! TTGATGGTCTGCCCTTCCAT+AGG + chr5_2:33292132-33292151 Msa0768240:intron 50.0%
CGGAAAGGGAAACCTATGGA+AGG - chr5_2:33292147-33292166 None:intergenic 50.0%
AGCTCGGAAAGGGAAACCTA+TGG - chr5_2:33292151-33292170 None:intergenic 50.0%
TTGGTACCAGAGCTCGGAAA+GGG - chr5_2:33292161-33292180 None:intergenic 50.0%
CTGGTACCAAGGATGGAAAC+TGG + chr5_2:33292171-33292190 Msa0768240:intron 50.0%
GTCAGACCAGTTTCCATCCT+TGG - chr5_2:33292180-33292199 None:intergenic 50.0%
CACTAGCTCATCGGTCACTT+TGG - chr5_2:33292532-33292551 None:intergenic 50.0%
GATGAGCTGCACTAGCTCAT+CGG - chr5_2:33292541-33292560 None:intergenic 50.0%
TGCAGCTCATCCTTAGTCCA+GGG + chr5_2:33292550-33292569 Msa0768240:CDS 50.0%
GTTTCCTCCCAGCCTATATG+AGG + chr5_2:33292664-33292683 Msa0768240:intron 50.0%
ACTTCCTCATATAGGCTGGG+AGG - chr5_2:33292671-33292690 None:intergenic 50.0%
TCCCAGCCTATATGAGGAAG+TGG + chr5_2:33292670-33292689 Msa0768240:intron 50.0%
CCCACTTCCTCATATAGGCT+GGG - chr5_2:33292674-33292693 None:intergenic 50.0%
CCCAGCCTATATGAGGAAGT+GGG + chr5_2:33292671-33292690 Msa0768240:intron 50.0%
TCCCACTTCCTCATATAGGC+TGG - chr5_2:33292675-33292694 None:intergenic 50.0%
ATGGGGTGACAAGGATCCTT+GGG + chr5_2:33292772-33292791 Msa0768240:CDS 50.0%
! CCCATCTCAATTGGTTCCCA+AGG - chr5_2:33292791-33292810 None:intergenic 50.0%
TGAGGGCAATGGCCAACATT+TGG - chr5_2:33292860-33292879 None:intergenic 50.0%
AAATGTTGGCCATTGCCCTC+AGG + chr5_2:33292859-33292878 Msa0768240:CDS 50.0%
GAGAAAGAACCTGAGGGCAA+TGG - chr5_2:33292871-33292890 None:intergenic 50.0%
GGCATGAGAGAAAGAACCTG+AGG - chr5_2:33292878-33292897 None:intergenic 50.0%
!! ATCTAGTCTTGCGTTGGCAG+TGG + chr5_2:33293346-33293365 Msa0768240:intron 50.0%
!! TCTAGTCTTGCGTTGGCAGT+GGG + chr5_2:33293347-33293366 Msa0768240:intron 50.0%
!! GACGAGCTTTGAGCTAAGGA+TGG + chr5_2:33293824-33293843 Msa0768240:intron 50.0%
TGCACCAACATTTGTCTGGG+GGG + chr5_2:33293902-33293921 Msa0768240:intron 50.0%
ATTGGTCCATAACGACTGGG+TGG - chr5_2:33294212-33294231 None:intergenic 50.0%
CTGCTCTAGTGTGTACCAAC+AGG + chr5_2:33294325-33294344 Msa0768240:intron 50.0%
TACAGGTCAGACAAGCCTGT+TGG - chr5_2:33294343-33294362 None:intergenic 50.0%
GACCTGTATCACCCTCAAGA+TGG + chr5_2:33294355-33294374 Msa0768240:intron 50.0%
GAGGGGAATATGAGTCCCAT+GGG - chr5_2:33294501-33294520 None:intergenic 50.0%
TGAGGGGAATATGAGTCCCA+TGG - chr5_2:33294502-33294521 None:intergenic 50.0%
TCTGTATGACATGGTAGGGC+TGG - chr5_2:33294570-33294589 None:intergenic 50.0%
CCCACTTGTGGAGTCATTTG+TGG + chr5_2:33295183-33295202 Msa0768240:CDS 50.0%
GCCACAAATGACTCCACAAG+TGG - chr5_2:33295187-33295206 None:intergenic 50.0%
GGAGAGAGTGAGAGTTGTGG+TGG - chr5_2:33289813-33289832 None:intergenic 55.0%
TGCACGGTTTCGGAGCTAAC+AGG + chr5_2:33290141-33290160 Msa0768240:intron 55.0%
AGCGAAGCTAACAAGTGCCC+TGG - chr5_2:33290475-33290494 None:intergenic 55.0%
TAATCCGGAGTTTGGTCGGG+AGG - chr5_2:33290829-33290848 None:intergenic 55.0%
CGACCAAACTCCGGATTACC+AGG + chr5_2:33290831-33290850 Msa0768240:intron 55.0%
GGTCCTGGTAATCCGGAGTT+TGG - chr5_2:33290837-33290856 None:intergenic 55.0%
! CGGTGGGATTTTGCTAGGTC+TGG - chr5_2:33291173-33291192 None:intergenic 55.0%
! ATGCAAACACTCTGACGGGC+TGG + chr5_2:33291937-33291956 Msa0768240:intron 55.0%
CGGGCAAGTATGAGATGCTC+GGG - chr5_2:33292093-33292112 None:intergenic 55.0%
AGGTTTCCCTTTCCGAGCTC+TGG + chr5_2:33292152-33292171 Msa0768240:intron 55.0%
CTTGGTACCAGAGCTCGGAA+AGG - chr5_2:33292162-33292181 None:intergenic 55.0%
! CTTTCCGAGCTCTGGTACCA+AGG + chr5_2:33292160-33292179 Msa0768240:intron 55.0%
CCATCCTTGGTACCAGAGCT+CGG - chr5_2:33292167-33292186 None:intergenic 55.0%
CCACAGCCTTAATTGGGCCT+AGG - chr5_2:33292321-33292340 None:intergenic 55.0%
CCTAGGCCCAATTAAGGCTG+TGG + chr5_2:33292318-33292337 Msa0768240:intron 55.0%
GGAGGAAGGTGGAGGAGAAA+AGG - chr5_2:33292344-33292363 None:intergenic 55.0%
GTGCAGCTCATCCTTAGTCC+AGG + chr5_2:33292549-33292568 Msa0768240:CDS 55.0%
TTACTCAGGAGGCCCTCTTC+CGG + chr5_2:33292614-33292633 Msa0768240:CDS 55.0%
GTAGCAGTTCCTCCGGAAGA+GGG - chr5_2:33292629-33292648 None:intergenic 55.0%
GGAACTGCTACCCCGAGTAA+AGG + chr5_2:33292638-33292657 Msa0768240:CDS 55.0%
CATGGGGTGACAAGGATCCT+TGG + chr5_2:33292771-33292790 Msa0768240:CDS 55.0%
!! CTAGTCTTGCGTTGGCAGTG+GGG + chr5_2:33293348-33293367 Msa0768240:intron 55.0%
! TTGCGTTGGCAGTGGGGAAA+AGG + chr5_2:33293354-33293373 Msa0768240:intron 55.0%
CGTCATCCACCCAGTCGTTA+TGG + chr5_2:33294203-33294222 Msa0768240:intron 55.0%
CTTGCCTCCCGACCAAACTC+CGG + chr5_2:33290822-33290841 Msa0768240:intron 60.0%
!! CACTCTGACGGGCTGGTTTC+TGG + chr5_2:33291944-33291963 Msa0768240:intron 60.0%
! CCGAGCTCTGGTACCAAGGA+TGG + chr5_2:33292164-33292183 Msa0768240:intron 60.0%
GCTCATCCTTAGTCCAGGGC+TGG + chr5_2:33292554-33292573 Msa0768240:CDS 60.0%
CAGGTTCCAGCCCTGGACTA+AGG - chr5_2:33292563-33292582 None:intergenic 60.0%
CTTAGTCCAGGGCTGGAACC+TGG + chr5_2:33292561-33292580 Msa0768240:CDS 60.0%
GGTAGCAGTTCCTCCGGAAG+AGG - chr5_2:33292630-33292649 None:intergenic 60.0%
ACTCGGGGTAGCAGTTCCTC+CGG - chr5_2:33292636-33292655 None:intergenic 60.0%
ACAGCACCAGGTTCCAGCCC+TGG - chr5_2:33292570-33292589 None:intergenic 65.0%
CTCAGGAGGCCCTCTTCCGG+AGG + chr5_2:33292617-33292636 Msa0768240:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 33289674 33295703 33289674 ID=Msa0768240;Name=Msa0768240
chr5_2 mRNA 33289674 33295703 33289674 ID=Msa0768240-mRNA-1;Parent=Msa0768240;Name=Msa0768240-mRNA-1;_AED=0.16;_eAED=0.16;_QI=123|0.85|0.75|1|0.85|0.75|8|454|337
chr5_2 exon 33289674 33289966 33289674 ID=Msa0768240-mRNA-1:exon:11796;Parent=Msa0768240-mRNA-1
chr5_2 exon 33290070 33290146 33290070 ID=Msa0768240-mRNA-1:exon:11797;Parent=Msa0768240-mRNA-1
chr5_2 exon 33291174 33291359 33291174 ID=Msa0768240-mRNA-1:exon:11798;Parent=Msa0768240-mRNA-1
chr5_2 exon 33291478 33291622 33291478 ID=Msa0768240-mRNA-1:exon:11799;Parent=Msa0768240-mRNA-1
chr5_2 exon 33291715 33291787 33291715 ID=Msa0768240-mRNA-1:exon:11800;Parent=Msa0768240-mRNA-1
chr5_2 exon 33292513 33292659 33292513 ID=Msa0768240-mRNA-1:exon:11801;Parent=Msa0768240-mRNA-1
chr5_2 exon 33292755 33292880 33292755 ID=Msa0768240-mRNA-1:exon:11802;Parent=Msa0768240-mRNA-1
chr5_2 exon 33295160 33295703 33295160 ID=Msa0768240-mRNA-1:exon:11803;Parent=Msa0768240-mRNA-1
chr5_2 five_prime_UTR 33289674 33289796 33289674 ID=Msa0768240-mRNA-1:five_prime_utr;Parent=Msa0768240-mRNA-1
chr5_2 CDS 33289797 33289966 33289797 ID=Msa0768240-mRNA-1:cds;Parent=Msa0768240-mRNA-1
chr5_2 CDS 33290070 33290146 33290070 ID=Msa0768240-mRNA-1:cds;Parent=Msa0768240-mRNA-1
chr5_2 CDS 33291174 33291359 33291174 ID=Msa0768240-mRNA-1:cds;Parent=Msa0768240-mRNA-1
chr5_2 CDS 33291478 33291622 33291478 ID=Msa0768240-mRNA-1:cds;Parent=Msa0768240-mRNA-1
chr5_2 CDS 33291715 33291787 33291715 ID=Msa0768240-mRNA-1:cds;Parent=Msa0768240-mRNA-1
chr5_2 CDS 33292513 33292659 33292513 ID=Msa0768240-mRNA-1:cds;Parent=Msa0768240-mRNA-1
chr5_2 CDS 33292755 33292880 33292755 ID=Msa0768240-mRNA-1:cds;Parent=Msa0768240-mRNA-1
chr5_2 CDS 33295160 33295249 33295160 ID=Msa0768240-mRNA-1:cds;Parent=Msa0768240-mRNA-1
chr5_2 three_prime_UTR 33295250 33295703 33295250 ID=Msa0768240-mRNA-1:three_prime_utr;Parent=Msa0768240-mRNA-1
Gene Sequence

>Msa0768240

ATGACATTTGCTTCCACCACAACTCTCACTCTCTCCCATCCTCGAACACTATCCCCTTACTCGAAAATTCGTTCTCATCAACAAAACAGTGTCGTTGCATTTTCTAGCTTCAGTAATCAAATTGTTTCCAAATTAAGCATTCAAAATGAAGAGCTCGATGTTCAAACCAGCATGTGGAATTGGAAGGGTTACAATATTCGCTATCAATATTCTGGGAACAACGGTCCTGCATTAGTTTTGGTGCACGACCTAGCAAAATCCCACCGTGTATACTCTATTGATCTTATTGGATATGGATATTCAGACAAACCAAATCCTCGTCAAATTGGAGACGATTCCTTTTACACGTTTGATACATGGGCCGCACAATTAAATGAGTTTTGTCTTGATGTCGTTAAGGATGAAGCATTCTTTATATGCAATTCTATTGGAGGAGTTGTAGGTCTTCAGGCAGCTATAACAGAACCACAAATCTGCAAGGGAATTCTCCTTCTTAATATATCTTTGCGTATGCTTCATATAAAGAAGCAGCCTTGGTATGCAAGACCTTTCATCAGTTCATTCCAAAGATTGCTTAGGGATACTTCTGTTGGAAAATTCTTCTTTAAAGCTGTTGCAACGAAAGAATCCGTGAAGAACATTTTATGCCAGTGCTATCATGACACTTCCAAAGTGACCGATGAGCTAGTGCAGCTCATCCTTAGTCCAGGGCTGGAACCTGGTGCTGTAGATGTCTTTCTTGAGTTTATTTGTTACTCAGGAGGCCCTCTTCCGGAGGAACTGCTACCCCGAGTAAAGTGTCCGGTTTTGATAGCATGGGGTGACAAGGATCCTTGGGAACCAATTGAGATGGGAAGAAATTACGGAAATTTTGATTCAGTGGAAGACTTCATTGTTCTTCCAAATGTTGGCCATTGCCCTCAGGATGAAGCACCTCAACTTGTGAACCCACTTGTGGAGTCATTTGTGGCACGGCATGCCAAATCTTCATCTCTTACCCCATCAGTTGATTGA

Protein sequence

>Msa0768240

MTFASTTTLTLSHPRTLSPYSKIRSHQQNSVVAFSSFSNQIVSKLSIQNEELDVQTSMWNWKGYNIRYQYSGNNGPALVLVHDLAKSHRVYSIDLIGYGYSDKPNPRQIGDDSFYTFDTWAAQLNEFCLDVVKDEAFFICNSIGGVVGLQAAITEPQICKGILLLNISLRMLHIKKQPWYARPFISSFQRLLRDTSVGKFFFKAVATKESVKNILCQCYHDTSKVTDELVQLILSPGLEPGAVDVFLEFICYSGGPLPEELLPRVKCPVLIAWGDKDPWEPIEMGRNYGNFDSVEDFIVLPNVGHCPQDEAPQLVNPLVESFVARHAKSSSLTPSVD*