AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0515420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515420 MtrunA17_Chr3g0124681 99.259 270 2 0 1 270 1 270 0.0 526
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0515420 AT1G44575.1 72.426 272 65 4 1 270 1 264 1.38e-110 320
Msa0515420 AT1G44575.3 72.426 272 65 4 1 270 1 264 1.38e-110 320
Msa0515420 AT1G44575.2 69.271 192 49 4 1 190 1 184 1.27e-61 193
Msa0515420 AT1G44575.2 71.429 49 14 0 194 242 84 132 4.65e-16 75.1

Find 87 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGGTTCAATTTCAGTAAT+TGG 0.150098 3_4:+66636078 None:intergenic
AATTCTAGCACAATTGAATT+TGG 0.184443 3_4:-66636617 Msa0515420:CDS
AAATATTATCTTTAATAATA+AGG 0.211059 3_4:+66638237 None:intergenic
TGCATGTTAGGTCCTTTATT+TGG 0.212751 3_4:-66636225 Msa0515420:intron
GATGGTATCTTTGGAACTTC+TGG 0.221695 3_4:-66637753 Msa0515420:CDS
TTGAGTCATGTTAGTGTCTT+TGG 0.244409 3_4:+66635710 None:intergenic
AACAAACAATTCATTGGATT+TGG 0.255758 3_4:+66636197 None:intergenic
AATTACAGTGTCAAAGATTA+AGG 0.268924 3_4:-66638050 Msa0515420:CDS
TTGATTGGAGAAATTATTAC+TGG 0.283745 3_4:-66636141 Msa0515420:CDS
TTTGGAACTTCTGGAGGATT+TGG 0.286142 3_4:-66637744 Msa0515420:CDS
AAGGTTGAAGATGGTATCTT+TGG 0.291595 3_4:-66637762 Msa0515420:CDS
AGAGGCTCAGCTTCATAAAT+TGG 0.298533 3_4:+66636583 None:intergenic
CATTTGCAGGCATCAATATT+AGG 0.305704 3_4:-66636661 Msa0515420:intron
TTCATTGCTGCTTTGAATCC+TGG 0.310194 3_4:-66636030 Msa0515420:CDS
TGTTGGAAGATTGGCTCAAT+TGG 0.313349 3_4:-66636178 Msa0515420:CDS
CCATCTTCAACCTTTGGCTT+TGG 0.320599 3_4:+66637771 None:intergenic
TCTTCCAACAAACAATTCAT+TGG 0.342233 3_4:+66636191 None:intergenic
TCTCGTCTATTGTACTATAT+TGG 0.359613 3_4:+66638320 None:intergenic
GATTTGGTGAATCCAAATAA+AGG 0.360093 3_4:+66636213 None:intergenic
GTGGTTCAATTTCAGTAATT+GGG 0.365857 3_4:+66636079 None:intergenic
GCACAATTGAATTTGGAAAC+TGG 0.368263 3_4:-66636610 Msa0515420:CDS
TTAGATCAGCTCTTGGTCTC+AGG 0.379018 3_4:-66636444 Msa0515420:CDS
GTTACAAAAGTGCCAGTTCC+AGG 0.380949 3_4:+66636012 None:intergenic
TGAATTGTTTGTTGGAAGAT+TGG 0.385211 3_4:-66636187 Msa0515420:CDS
AAGATACCATCTTCAACCTT+TGG 0.387880 3_4:+66637765 None:intergenic
ATAAATCATAATACCTCAAA+TGG 0.391937 3_4:-66638362 Msa0515420:five_prime_UTR
AAATCCAATGAATTGTTTGT+TGG 0.392325 3_4:-66636195 Msa0515420:CDS
AAGCAGAATGAACTCTTTGT+TGG 0.396845 3_4:-66637714 Msa0515420:CDS
AGTGTCAAAGATTAAGGCCT+AGG 0.399815 3_4:-66638044 Msa0515420:CDS
TATACATTATTTAAGTAGTA+AGG 0.400009 3_4:+66635755 None:intergenic
GTTGGAAGATTGGCTCAATT+GGG 0.400071 3_4:-66636177 Msa0515420:CDS
TAGTACCTTAGCAGGGGCTT+TGG 0.417597 3_4:+66637930 None:intergenic
TGGAGAAATTATTACTGGTA+AGG 0.421923 3_4:-66636136 Msa0515420:CDS
ATCACGTACATTCACTACTT+TGG 0.425907 3_4:-66637971 Msa0515420:CDS
TTAAGTTATCTCTTCATTTG+AGG 0.432163 3_4:-66638428 Msa0515420:five_prime_UTR
ATATTAGGTGAAGCATTAAC+TGG 0.440539 3_4:-66636646 Msa0515420:CDS
AAAATGAGTAGTACCTTAGC+AGG 0.443793 3_4:+66637922 None:intergenic
CACTTAGAATTTGAAGGAAG+TGG 0.453095 3_4:+66638000 None:intergenic
TTCACCTTGCTAGGAGCCAT+TGG 0.454770 3_4:-66636541 Msa0515420:CDS
GGAGTTATTCCTCCAGGAAA+AGG 0.455401 3_4:-66636469 Msa0515420:CDS
GCTGCTTTGAATCCTGGAAC+TGG 0.462882 3_4:-66636024 Msa0515420:CDS
CTAGGAGCCATTGGAGCTCT+AGG 0.483439 3_4:-66636532 Msa0515420:CDS
GCTCAGCTCAACATTGAGAC+TGG 0.484090 3_4:-66636105 Msa0515420:CDS
TATACCCTAAAATAAAATGA+AGG 0.486869 3_4:+66635847 None:intergenic
CTCAGCTCAACATTGAGACT+GGG 0.497814 3_4:-66636104 Msa0515420:CDS
GGAATAACTCCTCCAGTGTT+AGG 0.502221 3_4:+66636481 None:intergenic
AATAATAAGGTGTGTGGATG+TGG 0.504211 3_4:+66638250 None:intergenic
GGAGAAATTATTACTGGTAA+GGG 0.507917 3_4:-66636135 Msa0515420:CDS
GTTGGTCGTGTTGCTATGAT+CGG 0.516308 3_4:-66637696 Msa0515420:CDS
ACTTAGAATTTGAAGGAAGT+GGG 0.519799 3_4:+66638001 None:intergenic
GACACTGTAATTGAAGCAAA+GGG 0.525415 3_4:+66638061 None:intergenic
TGACACTGTAATTGAAGCAA+AGG 0.531256 3_4:+66638060 None:intergenic
TGCAAGAAAGTATCAATGAC+AGG 0.533291 3_4:+66638280 None:intergenic
TTGCTTGTGTTTGTGTTGTG+TGG 0.535772 3_4:+66638170 None:intergenic
ATCTTTAATAATAAGGTGTG+TGG 0.536802 3_4:+66638244 None:intergenic
TAGATCAGCTCTTGGTCTCA+GGG 0.538741 3_4:-66636443 Msa0515420:CDS
GGTGAAGCATTAACTGGCAA+AGG 0.540137 3_4:-66636640 Msa0515420:CDS
TGATACTCTAGTCTTATGTA+AGG 0.541107 3_4:-66635782 Msa0515420:three_prime_UTR
AAAGGATTTAGATCAGCTCT+TGG 0.544811 3_4:-66636451 Msa0515420:CDS
GGTATCTTTGGAACTTCTGG+AGG 0.556616 3_4:-66637750 Msa0515420:CDS
CATTTGAGGCAGAGAAGACA+AGG 0.562222 3_4:-66638414 Msa0515420:five_prime_UTR
AGGGTCTTTCTTCAAATCCA+CGG 0.566938 3_4:+66638080 None:intergenic
CCAAAGCCAAAGGTTGAAGA+TGG 0.567917 3_4:-66637771 Msa0515420:CDS
ATACCCTAAAATAAAATGAA+GGG 0.568348 3_4:+66635848 None:intergenic
TTCTTTAAGTACAAACAAAG+TGG 0.571060 3_4:+66635958 None:intergenic
TGTCTCTAGTACTTATTCCG+TGG 0.572333 3_4:-66638097 Msa0515420:CDS
ACTGGAGGAGTTATTCCTCC+AGG 0.573363 3_4:-66636475 Msa0515420:CDS
AACAACTCTATCATCTCCAT+TGG 0.578688 3_4:-66635883 Msa0515420:three_prime_UTR
AAATGAGTAGTACCTTAGCA+GGG 0.579295 3_4:+66637923 None:intergenic
AGCTCCAATGGCTCCTAGCA+AGG 0.581456 3_4:+66636537 None:intergenic
AAAGACCAAAGCCCCTGCTA+AGG 0.585648 3_4:-66637935 Msa0515420:intron
GAGCTAACATAGTATAGCAA+TGG 0.586771 3_4:-66638145 Msa0515420:exon
ACGGTCACCTAGAGCTCCAA+TGG 0.591758 3_4:+66636525 None:intergenic
TCAGCTCTTGGTCTCAGGGA+AGG 0.594171 3_4:-66636439 Msa0515420:CDS
AGGGACAAATGTGTAACCAA+TGG 0.597527 3_4:+66635867 None:intergenic
GCTCTTGGTCTCAGGGAAGG+AGG 0.614124 3_4:-66636436 Msa0515420:intron
AATAAGGTGTGTGGATGTGG+TGG 0.615196 3_4:+66638253 None:intergenic
GTTGATGATGAGCCTAACAC+TGG 0.618935 3_4:-66636493 Msa0515420:CDS
AATGAAACATCAGAAAACCT+AGG 0.623821 3_4:+66638027 None:intergenic
ATAACATTGAACAACACTAG+TGG 0.664923 3_4:+66636060 None:intergenic
ATAGTACAATAGACGAGACG+TGG 0.669845 3_4:-66638315 Msa0515420:five_prime_UTR
AATGAGTAGTACCTTAGCAG+GGG 0.688643 3_4:+66637924 None:intergenic
TCAGCTCAACATTGAGACTG+GGG 0.690397 3_4:-66636103 Msa0515420:CDS
TAGTACAATAGACGAGACGT+GGG 0.705825 3_4:-66638314 Msa0515420:five_prime_UTR
ATTGGAGCTCTAGGTGACCG+TGG 0.710208 3_4:-66636523 Msa0515420:CDS
CATCATCAACAAATTTACCA+CGG 0.716251 3_4:+66636506 None:intergenic
GATGATGAGCCTAACACTGG+AGG 0.724745 3_4:-66636490 Msa0515420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACATAATTTTTAATATCAT+TGG + chr3_4:66636998-66637017 None:intergenic 10.0%
!! CTATAAAAATTAAATGTTAA+AGG + chr3_4:66637133-66637152 None:intergenic 10.0%
!!! TTTACATGTAAAAAAATTTT+GGG - chr3_4:66637159-66637178 Msa0515420:intron 10.0%
!! TTGACAAATATTAATTAATT+AGG - chr3_4:66637315-66637334 Msa0515420:intron 10.0%
!! AATATTAATTAATTAGGATT+AGG - chr3_4:66637321-66637340 Msa0515420:intron 10.0%
!!! TTTGATTTTCAAAATTATTA+AGG - chr3_4:66637888-66637907 Msa0515420:intron 10.0%
!!! CAATTTTAGTAATTTTATTG+AGG - chr3_4:66637036-66637055 Msa0515420:intron 15.0%
!!! CTTTACATGTAAAAAAATTT+TGG - chr3_4:66637158-66637177 Msa0515420:intron 15.0%
!!! AAAAAATTTTGGGAAAAATT+TGG - chr3_4:66637169-66637188 Msa0515420:intron 15.0%
!! TATATCATGCAAATTAAAAA+GGG - chr3_4:66637458-66637477 Msa0515420:intron 15.0%
!! TATACATTATTTAAGTAGTA+AGG + chr3_4:66638416-66638435 None:intergenic 15.0%
!!! TATGAATGAACATCATTTTT+GGG + chr3_4:66635782-66635801 None:intergenic 20.0%
!!! TTATGAATGAACATCATTTT+TGG + chr3_4:66635783-66635802 None:intergenic 20.0%
!! ATAAATCATAATACCTCAAA+TGG - chr3_4:66635806-66635825 Msa0515420:three_prime_UTR 20.0%
!! ATAGACTTAAGTAATAGTTT+AGG + chr3_4:66636722-66636741 None:intergenic 20.0%
!!! TAAAGAACATTTTGAAGTTT+TGG + chr3_4:66637373-66637392 None:intergenic 20.0%
!! GTATATCATGCAAATTAAAA+AGG - chr3_4:66637457-66637476 Msa0515420:intron 20.0%
!!! AATTTATTTTTGTGCATGTT+AGG - chr3_4:66637931-66637950 Msa0515420:intron 20.0%
!! ATACCCTAAAATAAAATGAA+GGG + chr3_4:66638323-66638342 None:intergenic 20.0%
!! TATACCCTAAAATAAAATGA+AGG + chr3_4:66638324-66638343 None:intergenic 20.0%
! TTAAGTTATCTCTTCATTTG+AGG - chr3_4:66635740-66635759 Msa0515420:three_prime_UTR 25.0%
!!! ATGAATGAACATCATTTTTG+GGG + chr3_4:66635781-66635800 None:intergenic 25.0%
! GTGATAAAAATTTCCATTTG+AGG + chr3_4:66635822-66635841 None:intergenic 25.0%
! ATCTTTAATAATAAGGTGTG+TGG + chr3_4:66635927-66635946 None:intergenic 25.0%
! AATTACAGTGTCAAAGATTA+AGG - chr3_4:66636118-66636137 Msa0515420:CDS 25.0%
! GAAAAACACTTAGAATTTGA+AGG + chr3_4:66636177-66636196 None:intergenic 25.0%
! GGTTTGATGAAATATATTTC+AGG - chr3_4:66636363-66636382 Msa0515420:intron 25.0%
! AAAAAAAAGAACCTGTCAAA+AGG - chr3_4:66636915-66636934 Msa0515420:intron 25.0%
! AAAAAAAGAACCTGTCAAAA+GGG - chr3_4:66636916-66636935 Msa0515420:intron 25.0%
!! GCTTTTCTTTAACTAACTTT+TGG + chr3_4:66637430-66637449 None:intergenic 25.0%
! AATTCTAGCACAATTGAATT+TGG - chr3_4:66637551-66637570 Msa0515420:intron 25.0%
! AGGTGAAAATGATGAAAAAT+AGG + chr3_4:66637614-66637633 None:intergenic 25.0%
! AACAAACAATTCATTGGATT+TGG + chr3_4:66637974-66637993 None:intergenic 25.0%
! AAATCCAATGAATTGTTTGT+TGG - chr3_4:66637973-66637992 Msa0515420:CDS 25.0%
! TTGATTGGAGAAATTATTAC+TGG - chr3_4:66638027-66638046 Msa0515420:CDS 25.0%
! TTCTTTAAGTACAAACAAAG+TGG + chr3_4:66638213-66638232 None:intergenic 25.0%
!!! TTGTCCCTTCATTTTATTTT+AGG - chr3_4:66638316-66638335 Msa0515420:five_prime_UTR 25.0%
!!! TGTCCCTTCATTTTATTTTA+GGG - chr3_4:66638317-66638336 Msa0515420:five_prime_UTR 25.0%
TCTCGTCTATTGTACTATAT+TGG + chr3_4:66635851-66635870 None:intergenic 30.0%
AATGAAACATCAGAAAACCT+AGG + chr3_4:66636144-66636163 None:intergenic 30.0%
ACTTAGAATTTGAAGGAAGT+GGG + chr3_4:66636170-66636189 None:intergenic 30.0%
!! ATTTGAGAGCACTATGAATT+TGG - chr3_4:66636342-66636361 Msa0515420:intron 30.0%
GTAAAGTGAATATATCAGTG+AGG + chr3_4:66636520-66636539 None:intergenic 30.0%
!! GAAAATAAGACAAGTTGGTA+TGG + chr3_4:66636542-66636561 None:intergenic 30.0%
GCAATGAAAATAAGACAAGT+TGG + chr3_4:66636547-66636566 None:intergenic 30.0%
AAAAAAGAACCTGTCAAAAG+GGG - chr3_4:66636917-66636936 Msa0515420:intron 30.0%
! CAACTCTAACACTTGTTAAT+TGG - chr3_4:66637086-66637105 Msa0515420:intron 30.0%
! ATATTAGGTGAAGCATTAAC+TGG - chr3_4:66637522-66637541 Msa0515420:intron 30.0%
ATGATGAAAAATAGGAGAAG+AGG + chr3_4:66637606-66637625 None:intergenic 30.0%
CATCATCAACAAATTTACCA+CGG + chr3_4:66637665-66637684 None:intergenic 30.0%
TGTTTATAATAGTGACTAGC+AGG - chr3_4:66637857-66637876 Msa0515420:intron 30.0%
!! GATTTGGTGAATCCAAATAA+AGG + chr3_4:66637958-66637977 None:intergenic 30.0%
TCTTCCAACAAACAATTCAT+TGG + chr3_4:66637980-66637999 None:intergenic 30.0%
! TGAATTGTTTGTTGGAAGAT+TGG - chr3_4:66637981-66638000 Msa0515420:CDS 30.0%
!!! GGTTTTGTTTTCTCTTTGAT+TGG - chr3_4:66638012-66638031 Msa0515420:CDS 30.0%
TGGAGAAATTATTACTGGTA+AGG - chr3_4:66638032-66638051 Msa0515420:CDS 30.0%
GGAGAAATTATTACTGGTAA+GGG - chr3_4:66638033-66638052 Msa0515420:CDS 30.0%
GTGGTTCAATTTCAGTAATT+GGG + chr3_4:66638092-66638111 None:intergenic 30.0%
AGTGGTTCAATTTCAGTAAT+TGG + chr3_4:66638093-66638112 None:intergenic 30.0%
ATAACATTGAACAACACTAG+TGG + chr3_4:66638111-66638130 None:intergenic 30.0%
TGAAAAAAATTTAGGCTGAG+AGG - chr3_4:66638362-66638381 Msa0515420:five_prime_UTR 30.0%
!! TGATACTCTAGTCTTATGTA+AGG - chr3_4:66638386-66638405 Msa0515420:five_prime_UTR 30.0%
!! TGCAAGAAAGTATCAATGAC+AGG + chr3_4:66635891-66635910 None:intergenic 35.0%
AATAATAAGGTGTGTGGATG+TGG + chr3_4:66635921-66635940 None:intergenic 35.0%
GAGCTAACATAGTATAGCAA+TGG - chr3_4:66636023-66636042 Msa0515420:CDS 35.0%
GACACTGTAATTGAAGCAAA+GGG + chr3_4:66636110-66636129 None:intergenic 35.0%
TGACACTGTAATTGAAGCAA+AGG + chr3_4:66636111-66636130 None:intergenic 35.0%
CACTTAGAATTTGAAGGAAG+TGG + chr3_4:66636171-66636190 None:intergenic 35.0%
ATCACGTACATTCACTACTT+TGG - chr3_4:66636197-66636216 Msa0515420:CDS 35.0%
AAATGAGTAGTACCTTAGCA+GGG + chr3_4:66636248-66636267 None:intergenic 35.0%
AAAATGAGTAGTACCTTAGC+AGG + chr3_4:66636249-66636268 None:intergenic 35.0%
TGTTAAAAAGCCAAAGCCAA+AGG - chr3_4:66636387-66636406 Msa0515420:intron 35.0%
AAGATACCATCTTCAACCTT+TGG + chr3_4:66636406-66636425 None:intergenic 35.0%
AAGGTTGAAGATGGTATCTT+TGG - chr3_4:66636406-66636425 Msa0515420:intron 35.0%
AAGCAGAATGAACTCTTTGT+TGG - chr3_4:66636454-66636473 Msa0515420:CDS 35.0%
ACAAGTGTTAGAGTTGCAAA+TGG + chr3_4:66637082-66637101 None:intergenic 35.0%
TTGAGAACATTTGACAGCAT+GGG + chr3_4:66637214-66637233 None:intergenic 35.0%
TTTGAGAACATTTGACAGCA+TGG + chr3_4:66637215-66637234 None:intergenic 35.0%
CATAACAATGCAAGTCTTCA+TGG + chr3_4:66637251-66637270 None:intergenic 35.0%
AGGGTAGATAAGTTATGTCA+CGG - chr3_4:66637477-66637496 Msa0515420:intron 35.0%
CATTTGCAGGCATCAATATT+AGG - chr3_4:66637507-66637526 Msa0515420:intron 35.0%
GCACAATTGAATTTGGAAAC+TGG - chr3_4:66637558-66637577 Msa0515420:intron 35.0%
! TTCATCATTTTCACCTTGCT+AGG - chr3_4:66637618-66637637 Msa0515420:intron 35.0%
AAAGGATTTAGATCAGCTCT+TGG - chr3_4:66637717-66637736 Msa0515420:CDS 35.0%
TGCATGTTAGGTCCTTTATT+TGG - chr3_4:66637943-66637962 Msa0515420:CDS 35.0%
AACAACTCTATCATCTCCAT+TGG - chr3_4:66638285-66638304 Msa0515420:five_prime_UTR 35.0%
ATAGTACAATAGACGAGACG+TGG - chr3_4:66635853-66635872 Msa0515420:three_prime_UTR 40.0%
TAGTACAATAGACGAGACGT+GGG - chr3_4:66635854-66635873 Msa0515420:three_prime_UTR 40.0%
TTGCTTGTGTTTGTGTTGTG+TGG + chr3_4:66636001-66636020 None:intergenic 40.0%
TGTCTCTAGTACTTATTCCG+TGG - chr3_4:66636071-66636090 Msa0515420:CDS 40.0%
AGGGTCTTTCTTCAAATCCA+CGG + chr3_4:66636091-66636110 None:intergenic 40.0%
AGTGTCAAAGATTAAGGCCT+AGG - chr3_4:66636124-66636143 Msa0515420:CDS 40.0%
AATGAGTAGTACCTTAGCAG+GGG + chr3_4:66636247-66636266 None:intergenic 40.0%
!! GATGGTATCTTTGGAACTTC+TGG - chr3_4:66636415-66636434 Msa0515420:intron 40.0%
! TTTGGAACTTCTGGAGGATT+TGG - chr3_4:66636424-66636443 Msa0515420:intron 40.0%
! TGGATCCTTGACTAAGGTTT+TGG - chr3_4:66636940-66636959 Msa0515420:intron 40.0%
! GTTAGAGTTGCAAATGGACT+TGG + chr3_4:66637076-66637095 None:intergenic 40.0%
ATGGGCGGATCTAATATGTA+TGG + chr3_4:66637196-66637215 None:intergenic 40.0%
! TCACGGATTGTTTCATTTGC+AGG - chr3_4:66637494-66637513 Msa0515420:intron 40.0%
AGAGGCTCAGCTTCATAAAT+TGG + chr3_4:66637588-66637607 None:intergenic 40.0%
! GATCTAAATCCTTTTCCTGG+AGG + chr3_4:66637711-66637730 None:intergenic 40.0%
! GCTGATCTAAATCCTTTTCC+TGG + chr3_4:66637714-66637733 None:intergenic 40.0%
! TGTTGGAAGATTGGCTCAAT+TGG - chr3_4:66637990-66638009 Msa0515420:CDS 40.0%
! GTTGGAAGATTGGCTCAATT+GGG - chr3_4:66637991-66638010 Msa0515420:CDS 40.0%
!! TTCATTGCTGCTTTGAATCC+TGG - chr3_4:66638138-66638157 Msa0515420:exon 40.0%
AGGGACAAATGTGTAACCAA+TGG + chr3_4:66638304-66638323 None:intergenic 40.0%
! CATTTGAGGCAGAGAAGACA+AGG - chr3_4:66635754-66635773 Msa0515420:three_prime_UTR 45.0%
AATAAGGTGTGTGGATGTGG+TGG + chr3_4:66635918-66635937 None:intergenic 45.0%
! CCATCTTCAACCTTTGGCTT+TGG + chr3_4:66636400-66636419 None:intergenic 45.0%
CCAAAGCCAAAGGTTGAAGA+TGG - chr3_4:66636397-66636416 Msa0515420:intron 45.0%
!! GGTATCTTTGGAACTTCTGG+AGG - chr3_4:66636418-66636437 Msa0515420:intron 45.0%
! GTTGGTCGTGTTGCTATGAT+CGG - chr3_4:66636472-66636491 Msa0515420:CDS 45.0%
AAAGAACCTGTCAAAAGGGG+TGG - chr3_4:66636920-66636939 Msa0515420:intron 45.0%
CCACACCAAAACCTTAGTCA+AGG + chr3_4:66636948-66636967 None:intergenic 45.0%
!! CCTTGACTAAGGTTTTGGTG+TGG - chr3_4:66636945-66636964 Msa0515420:intron 45.0%
AGAACATTTGACAGCATGGG+CGG + chr3_4:66637211-66637230 None:intergenic 45.0%
! GGTGAAGCATTAACTGGCAA+AGG - chr3_4:66637528-66637547 Msa0515420:intron 45.0%
!! GTTGATGATGAGCCTAACAC+TGG - chr3_4:66637675-66637694 Msa0515420:intron 45.0%
GGAATAACTCCTCCAGTGTT+AGG + chr3_4:66637690-66637709 None:intergenic 45.0%
GGAGTTATTCCTCCAGGAAA+AGG - chr3_4:66637699-66637718 Msa0515420:CDS 45.0%
TTAGATCAGCTCTTGGTCTC+AGG - chr3_4:66637724-66637743 Msa0515420:CDS 45.0%
TAGATCAGCTCTTGGTCTCA+GGG - chr3_4:66637725-66637744 Msa0515420:CDS 45.0%
CTCAGCTCAACATTGAGACT+GGG - chr3_4:66638064-66638083 Msa0515420:CDS 45.0%
TCAGCTCAACATTGAGACTG+GGG - chr3_4:66638065-66638084 Msa0515420:CDS 45.0%
!! GTTACAAAAGTGCCAGTTCC+AGG + chr3_4:66638159-66638178 None:intergenic 45.0%
!! AAATATTATCTTTAATAATA+AGG + chr3_4:66635934-66635953 None:intergenic 5.0%
!!! TTTTTTTATGAAAAAAATTT+AGG - chr3_4:66638354-66638373 Msa0515420:five_prime_UTR 5.0%
AAAGACCAAAGCCCCTGCTA+AGG - chr3_4:66636233-66636252 Msa0515420:intron 50.0%
TAGTACCTTAGCAGGGGCTT+TGG + chr3_4:66636241-66636260 None:intergenic 50.0%
! AAGGATCCACCCCTTTTGAC+AGG + chr3_4:66636929-66636948 None:intergenic 50.0%
AAGGGGTGGATCCTTGACTA+AGG - chr3_4:66636934-66636953 Msa0515420:intron 50.0%
TTCACCTTGCTAGGAGCCAT+TGG - chr3_4:66637627-66637646 Msa0515420:intron 50.0%
GATGATGAGCCTAACACTGG+AGG - chr3_4:66637678-66637697 Msa0515420:intron 50.0%
ACTGGAGGAGTTATTCCTCC+AGG - chr3_4:66637693-66637712 Msa0515420:CDS 50.0%
GCTCAGCTCAACATTGAGAC+TGG - chr3_4:66638063-66638082 Msa0515420:CDS 50.0%
! GCTGCTTTGAATCCTGGAAC+TGG - chr3_4:66638144-66638163 Msa0515420:exon 50.0%
AGCTCCAATGGCTCCTAGCA+AGG + chr3_4:66637634-66637653 None:intergenic 55.0%
CTAGGAGCCATTGGAGCTCT+AGG - chr3_4:66637636-66637655 Msa0515420:intron 55.0%
ACGGTCACCTAGAGCTCCAA+TGG + chr3_4:66637646-66637665 None:intergenic 55.0%
!! ATTGGAGCTCTAGGTGACCG+TGG - chr3_4:66637645-66637664 Msa0515420:intron 55.0%
TCAGCTCTTGGTCTCAGGGA+AGG - chr3_4:66637729-66637748 Msa0515420:CDS 55.0%
GCTCTTGGTCTCAGGGAAGG+AGG - chr3_4:66637732-66637751 Msa0515420:CDS 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 66635719 66638471 66635719 ID=Msa0515420;Name=Msa0515420
chr3_4 mRNA 66635719 66638471 66635719 ID=Msa0515420-mRNA-1;Parent=Msa0515420;Name=Msa0515420-mRNA-1;_AED=0.32;_eAED=0.32;_QI=323|1|1|1|1|1|4|274|270
chr3_4 exon 66635719 66636237 66635719 ID=Msa0515420-mRNA-1:exon:17197;Parent=Msa0515420-mRNA-1
chr3_4 exon 66636437 66636674 66636437 ID=Msa0515420-mRNA-1:exon:17196;Parent=Msa0515420-mRNA-1
chr3_4 exon 66637689 66637805 66637689 ID=Msa0515420-mRNA-1:exon:17195;Parent=Msa0515420-mRNA-1
chr3_4 exon 66637936 66638471 66637936 ID=Msa0515420-mRNA-1:exon:17194;Parent=Msa0515420-mRNA-1
chr3_4 five_prime_UTR 66638149 66638471 66638149 ID=Msa0515420-mRNA-1:five_prime_utr;Parent=Msa0515420-mRNA-1
chr3_4 CDS 66637936 66638148 66637936 ID=Msa0515420-mRNA-1:cds;Parent=Msa0515420-mRNA-1
chr3_4 CDS 66637689 66637805 66637689 ID=Msa0515420-mRNA-1:cds;Parent=Msa0515420-mRNA-1
chr3_4 CDS 66636437 66636674 66636437 ID=Msa0515420-mRNA-1:cds;Parent=Msa0515420-mRNA-1
chr3_4 CDS 66635993 66636237 66635993 ID=Msa0515420-mRNA-1:cds;Parent=Msa0515420-mRNA-1
chr3_4 three_prime_UTR 66635719 66635992 66635719 ID=Msa0515420-mRNA-1:three_prime_utr;Parent=Msa0515420-mRNA-1
Gene Sequence

>Msa0515420

ATGGCACAAACTATGTTGCTCATGTCTAGTGTCTCTAGTACTTATTCCGTGGATTTGAAGAAAGACCCTTTGCTTCAATTACAGTGTCAAAGATTAAGGCCTAGGTTTTCTGATGTTTCATTCAACCCACTTCCTTCAAATTCTAAGTGTTTTTCATCACGTACATTCACTACTTTGGCTCTATTCAAATCAAAGACCAAAGCCCCTGCTAAGGTTGTTAAAAAGCCAAAGCCAAAGGTTGAAGATGGTATCTTTGGAACTTCTGGAGGATTTGGTTTCACTAAGCAGAATGAACTCTTTGTTGGTCGTGTTGCTATGATCGGTTTTGCAGCATCAATATTAGGTGAAGCATTAACTGGCAAAGGAATTCTAGCACAATTGAATTTGGAAACTGGAATTCCAATTTATGAAGCTGAGCCTCTTCTCCTATTTTTCATCATTTTCACCTTGCTAGGAGCCATTGGAGCTCTAGGTGACCGTGGTAAATTTGTTGATGATGAGCCTAACACTGGAGGAGTTATTCCTCCAGGAAAAGGATTTAGATCAGCTCTTGGTCTCAGGGAAGGAGGTCCTTTATTTGGATTCACCAAATCCAATGAATTGTTTGTTGGAAGATTGGCTCAATTGGGTTTTGTTTTCTCTTTGATTGGAGAAATTATTACTGGTAAGGGAGCTCTAGCTCAGCTCAACATTGAGACTGGGGTCCCAATTACTGAAATTGAACCACTAGTGTTGTTCAATGTTATTTTCTTCTTCATTGCTGCTTTGAATCCTGGAACTGGCACTTTTGTAACAGATGAAGAAGAAGATTAG

Protein sequence

>Msa0515420

MAQTMLLMSSVSSTYSVDLKKDPLLQLQCQRLRPRFSDVSFNPLPSNSKCFSSRTFTTLALFKSKTKAPAKVVKKPKPKVEDGIFGTSGGFGFTKQNELFVGRVAMIGFAASILGEALTGKGILAQLNLETGIPIYEAEPLLLFFIIFTLLGAIGALGDRGKFVDDEPNTGGVIPPGKGFRSALGLREGGPLFGFTKSNELFVGRLAQLGFVFSLIGEIITGKGALAQLNIETGVPITEIEPLVLFNVIFFFIAALNPGTGTFVTDEEED*