AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0932040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0932040 MtrunA17_Chr6g0449011 93.514 185 12 0 1 185 1 185 1.30e-130 363
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0932040 AT1G78995.1 71.277 94 19 2 92 185 74 159 6.15e-39 131

Find 44 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAAAGTTTATATGCTTAAT+AGG 0.173323 6_3:-73445 None:intergenic
CTATTGATATTATTAACTTT+AGG 0.227308 6_3:+75628 Msa0932040:three_prime_UTR
TATTGATATTATTAACTTTA+GGG 0.285324 6_3:+75629 Msa0932040:three_prime_UTR
CTTTAGCAATAAAATTTAGA+AGG 0.340200 6_3:+73314 Msa0932040:five_prime_UTR
TAAAGTTTATATGCTTAATA+GGG 0.350274 6_3:-73444 None:intergenic
CACTCGCCTGATAGAGTTTG+AGG 0.359156 6_3:-73791 None:intergenic
AACATACCTCAAACTCTATC+AGG 0.361189 6_3:+73785 Msa0932040:CDS
TCAAGTTTATTGCCACACTA+TGG 0.388806 6_3:+73515 Msa0932040:CDS
GATTCTGCTTTCCTTGACTT+TGG 0.395114 6_3:-73854 None:intergenic
ATGCCATTCCTACATGTTGG+AGG 0.449830 6_3:+73545 Msa0932040:CDS
AGAGGTGGTGATGGCTCTCC+TGG 0.450651 6_3:+73908 Msa0932040:CDS
AACTTTAAATGTATGAATGA+AGG 0.458604 6_3:+73460 Msa0932040:five_prime_UTR
TGACATTACTCTCACTCTGC+AGG 0.459007 6_3:-73643 None:intergenic
AGTGGTCCTATGATGTTAAG+AGG 0.471184 6_3:-73938 None:intergenic
AGAAAGATAATGTTAATTTG+TGG 0.472379 6_3:+73491 Msa0932040:exon
GCAATAAAATTTAGAAGGCA+AGG 0.474839 6_3:+73319 Msa0932040:five_prime_UTR
GGTGATGGCTCTCCTGGTGA+AGG 0.481595 6_3:+73914 Msa0932040:CDS
GAAGGCCCTCTTAACATCAT+AGG 0.486069 6_3:+73932 Msa0932040:CDS
TACCACAGCAGTTGTGAGAA+AGG 0.498036 6_3:-73702 None:intergenic
GATTGTTGAAGTGGTGGTTG+TGG 0.539051 6_3:+73420 Msa0932040:five_prime_UTR
ACTTTAAATGTATGAATGAA+GGG 0.541386 6_3:+73461 Msa0932040:five_prime_UTR
GACATTACTCTCACTCTGCA+GGG 0.543231 6_3:-73642 None:intergenic
ACTTGCATCAGAGGTGGTGA+TGG 0.545114 6_3:+73899 Msa0932040:CDS
TCCATGCCATTCCTACATGT+TGG 0.551983 6_3:+73542 Msa0932040:CDS
ATGTTAAGAGGGCCTTCACC+AGG 0.552852 6_3:-73926 None:intergenic
ACTTCAACTAACTATCAAGT+TGG 0.563862 6_3:-75804 None:intergenic
ACTAGTACGAAGTTTATCAC+TGG 0.571255 6_3:+73262 None:intergenic
ACAGTCACAGATTGTTGAAG+TGG 0.578388 6_3:+73411 Msa0932040:five_prime_UTR
TGTGTCACTACTTGCATCAG+AGG 0.586797 6_3:+73890 Msa0932040:CDS
AAACCTCCAACATGTAGGAA+TGG 0.587280 6_3:-73548 None:intergenic
TCAATAGCAGTATAAACTCA+AGG 0.591268 6_3:-75612 None:intergenic
TTTGAAAACCTCCAACATGT+AGG 0.601658 6_3:-73553 None:intergenic
TCCAACATGTAGGAATGGCA+TGG 0.608402 6_3:-73543 None:intergenic
TACCTTTCTCACAACTGCTG+TGG 0.615363 6_3:+73700 Msa0932040:CDS
AGGAAAGCAGAATCATGCAC+AGG 0.616667 6_3:+73863 Msa0932040:CDS
AAATACAGAAACCAAAGTCA+AGG 0.616765 6_3:+73843 Msa0932040:CDS
GTGGTCCTATGATGTTAAGA+GGG 0.627783 6_3:-73937 None:intergenic
TGCTCACATAAACATTACAA+AGG 0.637572 6_3:-75672 None:intergenic
GTCACAGATTGTTGAAGTGG+TGG 0.642771 6_3:+73414 Msa0932040:five_prime_UTR
CCTTGTTTGAAAACAACGAG+TGG 0.655728 6_3:-73956 None:intergenic
ATAAAATTTAGAAGGCAAGG+AGG 0.658672 6_3:+73322 Msa0932040:five_prime_UTR
GGCATGGAGGATCCATAGTG+TGG 0.671482 6_3:-73527 None:intergenic
GTCACTACTTGCATCAGAGG+TGG 0.688742 6_3:+73893 Msa0932040:CDS
AACATGTAGGAATGGCATGG+AGG 0.710592 6_3:-73540 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATTAATGAATTAAAAAAA+GGG + chr6_3:75266-75285 Msa0932040:intron 10.0%
!! TATTGATATTATTAACTTTA+GGG + chr6_3:75629-75648 Msa0932040:three_prime_UTR 10.0%
!!! AATTTTATTCTTTCAAATTT+CGG + chr6_3:75746-75765 Msa0932040:three_prime_UTR 10.0%
!! TAAAGTTTATATGCTTAATA+GGG - chr6_3:73447-73466 None:intergenic 15.0%
!! TTAAAGTTTATATGCTTAAT+AGG - chr6_3:73448-73467 None:intergenic 15.0%
!! TAAATTATAGCAAAAAGTTA+AGG - chr6_3:74014-74033 None:intergenic 15.0%
!!! CTTTTTTTAATTCATTAATC+TGG - chr6_3:75267-75286 None:intergenic 15.0%
!! CAGATTAATGAATTAAAAAA+AGG + chr6_3:75265-75284 Msa0932040:intron 15.0%
!!! AATATGAATTGCTTATTTTT+TGG + chr6_3:75426-75445 Msa0932040:intron 15.0%
!! CTATTGATATTATTAACTTT+AGG + chr6_3:75628-75647 Msa0932040:three_prime_UTR 15.0%
!!! AAATTTTATTGCTAAAGCAT+TGG - chr6_3:73311-73330 None:intergenic 20.0%
!! CTTTAGCAATAAAATTTAGA+AGG + chr6_3:73314-73333 Msa0932040:five_prime_UTR 20.0%
!! AACTTTAAATGTATGAATGA+AGG + chr6_3:73460-73479 Msa0932040:five_prime_UTR 20.0%
!! ACTTTAAATGTATGAATGAA+GGG + chr6_3:73461-73480 Msa0932040:five_prime_UTR 20.0%
!!! AGAAAGATAATGTTAATTTG+TGG + chr6_3:73491-73510 Msa0932040:exon 20.0%
!!! ACAAAGTTATTTTTCAAGAA+GGG - chr6_3:74271-74290 Msa0932050:CDS 20.0%
!!! ATGGAAAAAGTATTTCATTT+TGG - chr6_3:74938-74957 Msa0932050:CDS 20.0%
!! TTTAAATATGAATTTGAGCT+GGG - chr6_3:75058-75077 None:intergenic 20.0%
!! ATTTAAATATGAATTTGAGC+TGG - chr6_3:75059-75078 None:intergenic 20.0%
!! AGCTCAAATTCATATTTAAA+TGG + chr6_3:75058-75077 Msa0932040:intron 20.0%
!!! AGTTTTAAAGAAAACGATAA+GGG - chr6_3:75182-75201 None:intergenic 20.0%
!! TCAATTGAAAGATAATAACT+TGG - chr6_3:75512-75531 None:intergenic 20.0%
!!! ATTTATTTTGAAGTTCCAAC+TGG + chr6_3:74115-74134 Msa0932040:intron 25.0%
! TCAAATTAAAATGGTGTCTT+GGG - chr6_3:74222-74241 Msa0932050:CDS 25.0%
!!! CAAAGTTATTTTTCAAGAAG+GGG - chr6_3:74270-74289 Msa0932050:CDS 25.0%
!!! CACAAAGTTATTTTTCAAGA+AGG - chr6_3:74272-74291 Msa0932050:CDS 25.0%
! CTTCTTGAAAAATAACTTTG+TGG + chr6_3:74270-74289 Msa0932040:intron 25.0%
! AACATAAGACATATCATGAA+AGG + chr6_3:74508-74527 Msa0932040:intron 25.0%
! AAAGATTGATGTTCTGTATA+AGG - chr6_3:74613-74632 Msa0932050:intron 25.0%
!! CATTTCTTGTTATAAACACT+TGG - chr6_3:74696-74715 Msa0932050:intron 25.0%
! TATATAACTCTGTATCAAAG+TGG - chr6_3:75111-75130 None:intergenic 25.0%
!!! GTAGTGAGTTTTAATTTTGT+TGG - chr6_3:75138-75157 None:intergenic 25.0%
!!! TTTTAAAGAAAACGATAAGG+GGG - chr6_3:75180-75199 None:intergenic 25.0%
!!! GTTTTAAAGAAAACGATAAG+GGG - chr6_3:75181-75200 None:intergenic 25.0%
!!! CAGTTTTAAAGAAAACGATA+AGG - chr6_3:75183-75202 None:intergenic 25.0%
! TTCAGATTGATGAATTCAAA+GGG - chr6_3:75208-75227 None:intergenic 25.0%
!! ATATCTTTTTCTTCTAACGT+AGG - chr6_3:75333-75352 None:intergenic 25.0%
!!! AGTTGCTTATTTTGATTCTT+TGG + chr6_3:75385-75404 Msa0932040:intron 25.0%
! TTGTATAACTATTTACCTAC+AGG + chr6_3:75453-75472 Msa0932040:intron 25.0%
!!! ATAACTTGGTGCATTTTTTT+TGG - chr6_3:75498-75517 None:intergenic 25.0%
! ACTGCACAAAAAATTACATA+AGG - chr6_3:75541-75560 None:intergenic 25.0%
!!! ATGTAATTTTTTGTGCAGTT+TGG + chr6_3:75542-75561 Msa0932040:intron 25.0%
GCAATAAAATTTAGAAGGCA+AGG + chr6_3:73319-73338 Msa0932040:five_prime_UTR 30.0%
ATAAAATTTAGAAGGCAAGG+AGG + chr6_3:73322-73341 Msa0932040:five_prime_UTR 30.0%
!! GACTTTGGTTTCTGTATTTT+AGG - chr6_3:73842-73861 None:intergenic 30.0%
AAATACAGAAACCAAAGTCA+AGG + chr6_3:73843-73862 Msa0932040:CDS 30.0%
CAAATTAAAATGGTGTCTTG+GGG - chr6_3:74221-74240 Msa0932050:CDS 30.0%
CTCAAATTAAAATGGTGTCT+TGG - chr6_3:74223-74242 Msa0932050:CDS 30.0%
GACGATCTCTCAAATTAAAA+TGG - chr6_3:74231-74250 Msa0932050:CDS 30.0%
TAATTGGACGGATATTCAAA+AGG - chr6_3:74412-74431 Msa0932050:intron 30.0%
TTTGAATATCCGTCCAATTA+TGG + chr6_3:74412-74431 Msa0932040:intron 30.0%
TAAGACATATCATGAAAGGT+AGG + chr6_3:74512-74531 Msa0932040:intron 30.0%
GAATTGAAAGTTAATGTTGC+CGG - chr6_3:74747-74766 Msa0932050:intron 30.0%
TTCAGATACTGTTGTTAAAG+AGG - chr6_3:74862-74881 Msa0932050:CDS 30.0%
GATGTGGTTAGAAGAAAATT+GGG - chr6_3:74963-74982 None:intergenic 30.0%
TGATGTGGTTAGAAGAAAAT+TGG - chr6_3:74964-74983 None:intergenic 30.0%
! ATTTTCTTCTAACCACATCA+TGG + chr6_3:74964-74983 Msa0932040:intron 30.0%
GTTCAGATTGATGAATTCAA+AGG - chr6_3:75209-75228 None:intergenic 30.0%
TTGCTTATCTACTAAGTGAA+AGG + chr6_3:75299-75318 Msa0932040:intron 30.0%
!!! TAATTTTTTGTGCAGTTTGG+TGG + chr6_3:75545-75564 Msa0932040:intron 30.0%
TCAATAGCAGTATAAACTCA+AGG - chr6_3:75615-75634 None:intergenic 30.0%
TGCTCACATAAACATTACAA+AGG - chr6_3:75675-75694 None:intergenic 30.0%
ACTTCAACTAACTATCAAGT+TGG - chr6_3:75807-75826 None:intergenic 30.0%
TCAAGTTTATTGCCACACTA+TGG + chr6_3:73515-73534 Msa0932040:CDS 35.0%
TTTGAAAACCTCCAACATGT+AGG - chr6_3:73556-73575 None:intergenic 35.0%
! GTTTTCAAAGTGAGAGGAAT+TGG + chr6_3:73567-73586 Msa0932040:CDS 35.0%
AACATACCTCAAACTCTATC+AGG + chr6_3:73785-73804 Msa0932040:CDS 35.0%
CAACTAGATAGACATCATAG+AGG + chr6_3:74138-74157 Msa0932040:intron 35.0%
!!! TATTTTTCAAGAAGGGGTTG+CGG - chr6_3:74264-74283 Msa0932050:CDS 35.0%
! TCAAAAGGTGTAAACCATGA+AGG - chr6_3:74397-74416 Msa0932050:intron 35.0%
GTCCTTTCTCTTATAATGCA+TGG - chr6_3:74442-74461 Msa0932050:intron 35.0%
TTGGTTTCGAGATTACATCA+AGG - chr6_3:74582-74601 Msa0932050:intron 35.0%
TAATCTCGAAACCAAAACCT+TGG + chr6_3:74587-74606 Msa0932040:intron 35.0%
!! ATCGATTTTGACAAAGGCTT+TGG - chr6_3:74646-74665 Msa0932050:intron 35.0%
!! CTAGTGATCGATTTTGACAA+AGG - chr6_3:74652-74671 Msa0932050:intron 35.0%
ATGGTTATTTGGTATGGAGT+TGG - chr6_3:74815-74834 Msa0932050:CDS 35.0%
!! GTGTTGATGGTTATTTGGTA+TGG - chr6_3:74821-74840 Msa0932050:CDS 35.0%
!! TATGGGTGTTGATGGTTATT+TGG - chr6_3:74826-74845 Msa0932050:CDS 35.0%
CTAAGAAAGACATCCTTAAG+AGG + chr6_3:74888-74907 Msa0932040:intron 35.0%
!! TTCATTTTGGCATGATCTGT+GGG - chr6_3:74925-74944 Msa0932050:CDS 35.0%
!! TTTCATTTTGGCATGATCTG+TGG - chr6_3:74926-74945 Msa0932050:CDS 35.0%
GTTAGAAGAAAATTGGGAGA+TGG - chr6_3:74957-74976 Msa0932050:CDS 35.0%
TTATTAGTGGTTCCATGATG+TGG - chr6_3:74979-74998 None:intergenic 35.0%
GTGAGAGGACTATTTATTAG+TGG - chr6_3:74992-75011 None:intergenic 35.0%
AAATGGTGTCTCTATCTTGA+AGG + chr6_3:75075-75094 Msa0932040:intron 35.0%
! TCTGTATCAAAGTGGATTTG+GGG - chr6_3:75103-75122 None:intergenic 35.0%
! CTCTGTATCAAAGTGGATTT+GGG - chr6_3:75104-75123 None:intergenic 35.0%
! ACTCTGTATCAAAGTGGATT+TGG - chr6_3:75105-75124 None:intergenic 35.0%
! CTACTAAGTGAAAGGTCTTT+TGG + chr6_3:75307-75326 Msa0932040:intron 35.0%
! TTTGAGACTTAATCTCCTGT+AGG - chr6_3:75471-75490 None:intergenic 35.0%
ACAGTCACAGATTGTTGAAG+TGG + chr6_3:73411-73430 Msa0932040:five_prime_UTR 40.0%
AAACCTCCAACATGTAGGAA+TGG - chr6_3:73551-73570 None:intergenic 40.0%
! TTGGAGGTTTTCAAAGTGAG+AGG + chr6_3:73561-73580 Msa0932040:CDS 40.0%
GATTCTGCTTTCCTTGACTT+TGG - chr6_3:73857-73876 None:intergenic 40.0%
GTGGTCCTATGATGTTAAGA+GGG - chr6_3:73940-73959 None:intergenic 40.0%
AGTGGTCCTATGATGTTAAG+AGG - chr6_3:73941-73960 None:intergenic 40.0%
! CCTTGTTTGAAAACAACGAG+TGG - chr6_3:73959-73978 None:intergenic 40.0%
!! CCACTCGTTGTTTTCAAACA+AGG + chr6_3:73956-73975 Msa0932040:CDS 40.0%
! GTTTTCGATCTCGTCATTAC+TGG + chr6_3:73978-73997 Msa0932040:CDS 40.0%
ATGTCTATCTAGTTGCCAGT+TGG - chr6_3:74133-74152 None:intergenic 40.0%
TTAAAATGGTGTCTTGGGGA+TGG - chr6_3:74217-74236 Msa0932050:CDS 40.0%
!!! GAGAACCGGCTTTCTTTTTT+GGG - chr6_3:74323-74342 Msa0932050:CDS 40.0%
!!! AGAGAACCGGCTTTCTTTTT+TGG - chr6_3:74324-74343 Msa0932050:CDS 40.0%
CATAAGCGTTTGAAGAGAAC+CGG - chr6_3:74337-74356 Msa0932050:intron 40.0%
TCTCTTCTTGCATGCAAACT+CGG - chr6_3:74365-74384 Msa0932050:intron 40.0%
AGAGATGTTGAACACCTTCA+TGG + chr6_3:74380-74399 Msa0932040:intron 40.0%
AATATCCGTCCAATTATGGC+AGG + chr6_3:74416-74435 Msa0932040:intron 40.0%
GGCCATGCATTATAAGAGAA+AGG + chr6_3:74437-74456 Msa0932040:intron 40.0%
AAGGACAAGAGAAGAAGAGA+TGG + chr6_3:74456-74475 Msa0932040:intron 40.0%
AGGAAGACTAGCAACTAAAG+AGG - chr6_3:74562-74581 Msa0932050:intron 40.0%
! TCTGTATAAGGCCAAGGTTT+TGG - chr6_3:74601-74620 Msa0932050:intron 40.0%
TGATGTTCTGTATAAGGCCA+AGG - chr6_3:74607-74626 Msa0932050:intron 40.0%
GTTATTTGGTATGGAGTTGG+TGG - chr6_3:74812-74831 Msa0932050:CDS 40.0%
TAGGTGAAAACTAGTGTGAG+AGG - chr6_3:75007-75026 None:intergenic 40.0%
ATGAATTTGAGCTGGGAAGT+AGG - chr6_3:75051-75070 None:intergenic 40.0%
GTCACAGATTGTTGAAGTGG+TGG + chr6_3:73414-73433 Msa0932040:five_prime_UTR 45.0%
GATTGTTGAAGTGGTGGTTG+TGG + chr6_3:73420-73439 Msa0932040:five_prime_UTR 45.0%
AACATGTAGGAATGGCATGG+AGG - chr6_3:73543-73562 None:intergenic 45.0%
TCCATGCCATTCCTACATGT+TGG + chr6_3:73542-73561 Msa0932040:CDS 45.0%
TCCAACATGTAGGAATGGCA+TGG - chr6_3:73546-73565 None:intergenic 45.0%
ATGCCATTCCTACATGTTGG+AGG + chr6_3:73545-73564 Msa0932040:CDS 45.0%
GACATTACTCTCACTCTGCA+GGG - chr6_3:73645-73664 None:intergenic 45.0%
TGACATTACTCTCACTCTGC+AGG - chr6_3:73646-73665 None:intergenic 45.0%
TACCTTTCTCACAACTGCTG+TGG + chr6_3:73700-73719 Msa0932040:CDS 45.0%
TACCACAGCAGTTGTGAGAA+AGG - chr6_3:73705-73724 None:intergenic 45.0%
AGGAAAGCAGAATCATGCAC+AGG + chr6_3:73863-73882 Msa0932040:CDS 45.0%
! TGTGTCACTACTTGCATCAG+AGG + chr6_3:73890-73909 Msa0932040:CDS 45.0%
GAAGGCCCTCTTAACATCAT+AGG + chr6_3:73932-73951 Msa0932040:CDS 45.0%
CAACCAAAGACACCAAACCA+CGG + chr6_3:74294-74313 Msa0932040:intron 45.0%
!!! AACCGGCTTTCTTTTTTGGG+TGG - chr6_3:74320-74339 Msa0932050:CDS 45.0%
AATGCATGGCCTGCCATAAT+TGG - chr6_3:74428-74447 Msa0932050:intron 45.0%
TCCCCAACATTGTTCAACAC+CGG + chr6_3:74725-74744 Msa0932040:intron 45.0%
! TGCCGGTGTTGAACAATGTT+GGG - chr6_3:74730-74749 Msa0932050:intron 45.0%
! TTGCCGGTGTTGAACAATGT+TGG - chr6_3:74731-74750 Msa0932050:intron 45.0%
!! ATTTGGTATGGAGTTGGTGG+TGG - chr6_3:74809-74828 Msa0932050:CDS 45.0%
TGTTGTTAAAGAGGCCAGCA+CGG - chr6_3:74853-74872 Msa0932050:CDS 45.0%
!! GGTTGGTTGGTTTCCTCTTA+AGG - chr6_3:74904-74923 Msa0932050:CDS 45.0%
! TTTTGGCATGATCTGTGGGT+TGG - chr6_3:74921-74940 Msa0932050:CDS 45.0%
! TTCTTTGTGGTGGAGAGACT+AGG - chr6_3:75026-75045 None:intergenic 45.0%
GAAGTAGGAGTTCTTTGTGG+TGG - chr6_3:75036-75055 None:intergenic 45.0%
TGGGAAGTAGGAGTTCTTTG+TGG - chr6_3:75039-75058 None:intergenic 45.0%
CACTCGCCTGATAGAGTTTG+AGG - chr6_3:73794-73813 None:intergenic 50.0%
GTCACTACTTGCATCAGAGG+TGG + chr6_3:73893-73912 Msa0932040:CDS 50.0%
ACTTGCATCAGAGGTGGTGA+TGG + chr6_3:73899-73918 Msa0932040:CDS 50.0%
ATGTTAAGAGGGCCTTCACC+AGG - chr6_3:73929-73948 None:intergenic 50.0%
! GTTTGTTGGTGAAGGCTGGT+AGG - chr6_3:74195-74214 Msa0932050:CDS 50.0%
!! GATGGTTTGTTGGTGAAGGC+TGG - chr6_3:74199-74218 Msa0932050:CDS 50.0%
!! TGGGGATGGTTTGTTGGTGA+AGG - chr6_3:74203-74222 Msa0932050:CDS 50.0%
! GTGTCTTGGGGATGGTTTGT+TGG - chr6_3:74209-74228 Msa0932050:CDS 50.0%
!! CGTGGTTTGGTGTCTTTGGT+TGG - chr6_3:74296-74315 Msa0932050:CDS 50.0%
!!! TTTTTTGGGTGGCCGTGGTT+TGG - chr6_3:74309-74328 Msa0932050:CDS 50.0%
!!! CTTTCTTTTTTGGGTGGCCG+TGG - chr6_3:74314-74333 Msa0932050:CDS 50.0%
GGCCACCCAAAAAAGAAAGC+CGG + chr6_3:74315-74334 Msa0932040:intron 50.0%
CATGGCCTGCCATAATTGGA+CGG - chr6_3:74424-74443 Msa0932050:intron 50.0%
AAGAGGCTTTCGCTAGCAGA+GGG - chr6_3:74545-74564 Msa0932050:intron 50.0%
AAAGAGGCTTTCGCTAGCAG+AGG - chr6_3:74546-74565 Msa0932050:intron 50.0%
! GCCGGTGTTGAACAATGTTG+GGG - chr6_3:74729-74748 Msa0932050:intron 50.0%
GGCATGGAGGATCCATAGTG+TGG - chr6_3:73530-73549 None:intergenic 55.0%
!! TGGCCGTGGTTTGGTGTCTT+TGG - chr6_3:74300-74319 Msa0932050:CDS 55.0%
AGAGGCTTTCGCTAGCAGAG+GGG - chr6_3:74544-74563 Msa0932050:intron 55.0%
!! TATGGAGTTGGTGGTGGAGG+AGG - chr6_3:74803-74822 Msa0932050:CDS 55.0%
!! TGGTATGGAGTTGGTGGTGG+AGG - chr6_3:74806-74825 Msa0932050:CDS 55.0%
!! ACGGCGGATATGGGTGTTGA+TGG - chr6_3:74834-74853 Msa0932050:CDS 55.0%
TGTTAAAGAGGCCAGCACGG+CGG - chr6_3:74850-74869 Msa0932050:CDS 55.0%
!! GGCATGATCTGTGGGTTGGT+TGG - chr6_3:74917-74936 Msa0932050:CDS 55.0%
!! AGAGGTGGTGATGGCTCTCC+TGG + chr6_3:73908-73927 Msa0932040:CDS 60.0%
! GGTGATGGCTCTCCTGGTGA+AGG + chr6_3:73914-73933 Msa0932040:CDS 60.0%
GAGGCTTTCGCTAGCAGAGG+GGG - chr6_3:74543-74562 Msa0932050:intron 60.0%
AACACCCATATCCGCCGTGC+TGG + chr6_3:74836-74855 Msa0932040:intron 60.0%
GAGGCCAGCACGGCGGATAT+GGG - chr6_3:74843-74862 Msa0932050:CDS 65.0%
AGAGGCCAGCACGGCGGATA+TGG - chr6_3:74844-74863 Msa0932050:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 73269 75829 73269 ID=Msa0932040;Name=Msa0932040
chr6_3 mRNA 73269 75829 73269 ID=Msa0932040-mRNA-1;Parent=Msa0932040;Name=Msa0932040-mRNA-1;_AED=0.00;_eAED=0.00;_QI=231|1|1|1|0|0|2|212|185
chr6_3 exon 73269 73999 73269 ID=Msa0932040-mRNA-1:exon:24;Parent=Msa0932040-mRNA-1
chr6_3 exon 75560 75829 75560 ID=Msa0932040-mRNA-1:exon:25;Parent=Msa0932040-mRNA-1
chr6_3 five_prime_UTR 73269 73499 73269 ID=Msa0932040-mRNA-1:five_prime_utr;Parent=Msa0932040-mRNA-1
chr6_3 CDS 73500 73999 73500 ID=Msa0932040-mRNA-1:cds;Parent=Msa0932040-mRNA-1
chr6_3 CDS 75560 75617 75560 ID=Msa0932040-mRNA-1:cds;Parent=Msa0932040-mRNA-1
chr6_3 three_prime_UTR 75618 75829 75618 ID=Msa0932040-mRNA-1:three_prime_utr;Parent=Msa0932040-mRNA-1
Gene Sequence

>Msa0932040

ATGTTAATTTGTGGCTCAAGTTTATTGCCACACTATGGATCCTCCATGCCATTCCTACATGTTGGAGGTTTTCAAAGTGAGAGGAATTGGCACAGCAAGAACAACAATTCAAGTAGAAGAAGCATCATCATCACTTGTAAATCCCTGCAGAGTGAGAGTAATGTCAAAAGAGTATGCAACAAATACAGTGTTACACTTGCTACCTTTCTCACAACTGCTGTGGTAATAGCATCAATTGCAACAGTTGATGCAGCAACATATGATGAACAAGAAGAGACTTTATCAAACATACCTCAAACTCTATCAGGCGAGTGCAAAACAGCTCAAGATTGCAAGAAACCTAAAATACAGAAACCAAAGTCAAGGAAAGCAGAATCATGCACAGGTAAGTGTGTCACTACTTGCATCAGAGGTGGTGATGGCTCTCCTGGTGAAGGCCCTCTTAACATCATAGGACCACTCGTTGTTTTCAAACAAGGTTTTCGATCTCGTCATTACTGTTTGGTGGAATGTTCAGATATCTGTAATTTGATAAGCAGTGCTGACAACGTGCCTTGA

Protein sequence

>Msa0932040

MLICGSSLLPHYGSSMPFLHVGGFQSERNWHSKNNNSSRRSIIITCKSLQSESNVKRVCNKYSVTLATFLTTAVVIASIATVDAATYDEQEETLSNIPQTLSGECKTAQDCKKPKIQKPKSRKAESCTGKCVTTCIRGGDGSPGEGPLNIIGPLVVFKQGFRSRHYCLVECSDICNLISSADNVP*