AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1136770


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1136770 MtrunA17_Chr7g0259311 95.872 218 9 0 1 218 1 218 4.77e-148 410
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1136770 AT2G48070.1 80.986 142 27 0 77 218 56 197 3.25e-84 248
Msa1136770 AT2G48070.2 80.986 142 27 0 77 218 56 197 3.25e-84 248
Msa1136770 AT2G48070.3 78.767 146 27 1 77 218 56 201 6.48e-82 243

Find 98 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCGTTAATTAAGAATTTA+AGG 0.115602 7_4:+5534300 Msa1136770:five_prime_UTR
ATGATCTGTATCACTGATTT+TGG 0.119161 7_4:+5536624 Msa1136770:three_prime_UTR
CTTCAGACCAACCTGATCTT+TGG 0.218609 7_4:+5535299 Msa1136770:CDS
ACTAAATTACATTTCATCTT+TGG 0.225995 7_4:-5536584 None:intergenic
CACCTTAAATTCTTAATTAA+CGG 0.265433 7_4:-5534302 None:intergenic
GCAGATATAATAGCTTTCTT+TGG 0.277583 7_4:+5536061 Msa1136770:CDS
CTTCAAACCATTACCTTTGT+AGG 0.281560 7_4:+5534481 Msa1136770:CDS
CTAAATTACATTTCATCTTT+GGG 0.304114 7_4:-5536583 None:intergenic
TTGCCTTAGTTAACATTTGA+TGG 0.308946 7_4:-5536885 None:intergenic
AATAGACAAAGAACTTAAAA+AGG 0.327859 7_4:+5534689 Msa1136770:CDS
AGAGGAAGTGCTTTCTTCAT+TGG 0.351463 7_4:-5534652 None:intergenic
TAAGGTGGTTCCTCATTGTT+TGG 0.363170 7_4:+5534318 Msa1136770:five_prime_UTR
AAAGGTAATGGTTTGAAGAA+TGG 0.382770 7_4:-5534476 None:intergenic
GGTGTGGATTTGAACACATT+TGG 0.384933 7_4:-5534281 None:intergenic
ACCTGATCTTTGGAGATTGA+TGG 0.394975 7_4:+5535309 Msa1136770:CDS
TGATGGGAATGTGGTCCATT+TGG 0.397897 7_4:+5535326 Msa1136770:CDS
GATGGTCCTTCAATAATTCA+TGG 0.407473 7_4:-5536867 None:intergenic
CTTAAGGTTGAAAGGTACTT+TGG 0.417588 7_4:-5534552 None:intergenic
AGTGCTTTCTTCATTGGTGT+TGG 0.419272 7_4:-5534646 None:intergenic
GAACTTACTGAACATCCAAA+TGG 0.422454 7_4:-5535341 None:intergenic
TGAAGTCCTTTGCTGTTGTT+TGG 0.424798 7_4:+5536035 Msa1136770:CDS
TGAAAGGTACTTTGGAAGGT+TGG 0.424998 7_4:-5534544 None:intergenic
ACAGTATACAAGGTACTTCC+AGG 0.432743 7_4:-5535211 None:intergenic
TGTGTCTACTAGGGAGTTAG+AGG 0.436256 7_4:+5536461 Msa1136770:three_prime_UTR
AACACAAGGATGAAAGAATT+CGG 0.439484 7_4:+5536417 Msa1136770:three_prime_UTR
GGGATAAGGTGAGCGTCTTA+AGG 0.439792 7_4:-5534568 None:intergenic
AGCGTATGCATCAATGTTGT+TGG 0.443654 7_4:+5535246 Msa1136770:CDS
AGCTGCAACCTTTGCACCGA+GGG 0.452896 7_4:+5535159 Msa1136770:CDS
ATTTGAAGTGGCACATGCAA+TGG 0.456020 7_4:-5534589 None:intergenic
CAACATTGAGCAAGGGAACT+AGG 0.460297 7_4:-5535997 None:intergenic
TTTGATGCCGTTGAAGCCCT+CGG 0.469009 7_4:-5535175 None:intergenic
CTTTGGAATGTATGCATGGA+AGG 0.470844 7_4:+5536078 Msa1136770:CDS
AAAGAGTTAACCGCCAGGTT+GGG 0.471650 7_4:-5536286 None:intergenic
CCTGGCGGTTAACTCTTTGA+AGG 0.473984 7_4:+5536291 Msa1136770:three_prime_UTR
GTTTGAATTGGAGAGACTAA+AGG 0.476477 7_4:-5534513 None:intergenic
GCTTGGATGGCTCCAGAAAA+CGG 0.476983 7_4:+5536254 Msa1136770:intron
CCCATCAATCTCCAAAGATC+AGG 0.478700 7_4:-5535310 None:intergenic
TTTGAATTGGAGAGACTAAA+GGG 0.483141 7_4:-5534512 None:intergenic
TACAACTTCTTCATTTGAAG+TGG 0.486651 7_4:-5534601 None:intergenic
TTTGAAGTGGCACATGCAAT+GGG 0.489031 7_4:-5534588 None:intergenic
GAATTCGGCGTGGAAATTCC+AGG 0.493667 7_4:+5536432 Msa1136770:three_prime_UTR
TTCAAACCATTACCTTTGTA+GGG 0.495407 7_4:+5534482 Msa1136770:CDS
AAGGTACTTCCAGGTACTGC+AGG 0.496122 7_4:-5535202 None:intergenic
CCTGATCTTTGGAGATTGAT+GGG 0.498697 7_4:+5535310 Msa1136770:CDS
CAAAGATCAGGTTGGTCTGA+AGG 0.501488 7_4:-5535298 None:intergenic
CTTTGCACCGAGGGCTTCAA+CGG 0.504270 7_4:+5535168 Msa1136770:CDS
TGATGGCCATGAATTATTGA+AGG 0.512425 7_4:+5536861 Msa1136770:three_prime_UTR
TTCTGAAATTAAGTTGTCAT+CGG 0.512941 7_4:-5534421 None:intergenic
GTTGACTCTTGAATTTCTCA+AGG 0.513512 7_4:+5536317 Msa1136770:three_prime_UTR
CGAGGATGGTGATGAGAAGA+TGG 0.517965 7_4:-5534393 None:intergenic
TGATGAGAAGATGGAAGATA+AGG 0.519078 7_4:-5534384 None:intergenic
GTCCTTTGCTGTTGTTTGGT+CGG 0.519274 7_4:+5536039 Msa1136770:CDS
GTGGCACATGCAATGGGATA+AGG 0.520683 7_4:-5534582 None:intergenic
CAAAGAGTTAACCGCCAGGT+TGG 0.522405 7_4:-5536287 None:intergenic
CAATCTCGAGCTCGCAAGGA+AGG 0.524706 7_4:-5535935 None:intergenic
GCTCCAGAAAACGGACTAGT+TGG 0.530122 7_4:+5536263 Msa1136770:exon
GATGAAATGTAATTTAGTCA+TGG 0.530814 7_4:+5536589 Msa1136770:three_prime_UTR
AGGTTGAAAGGTACTTTGGA+AGG 0.535613 7_4:-5534548 None:intergenic
AAAGATCAGGTTGGTCTGAA+GGG 0.540412 7_4:-5535297 None:intergenic
TGAGCAATCTCGAGCTCGCA+AGG 0.542578 7_4:-5535939 None:intergenic
AATTGGAGAGACTAAAGGGT+AGG 0.543404 7_4:-5534508 None:intergenic
CGTTGAAGCCCTCGGTGCAA+AGG 0.550250 7_4:-5535167 None:intergenic
GCGTATGCATCAATGTTGTT+GGG 0.556094 7_4:+5535247 Msa1136770:CDS
CTAGTAGACACAAAAGCACC+TGG 0.556106 7_4:-5536450 None:intergenic
AGGGTACCCTACAAAGGTAA+TGG 0.556258 7_4:-5534488 None:intergenic
TAAATTCTTAATTAACGGTG+TGG 0.563403 7_4:-5534297 None:intergenic
ACTAGGGAGTTAGAGGTCAA+AGG 0.567066 7_4:+5536468 Msa1136770:three_prime_UTR
CTTTCTTTGGAATGTATGCA+TGG 0.570202 7_4:+5536074 Msa1136770:CDS
ACGGACTAGTTGGCCCAACC+TGG 0.571324 7_4:+5536273 Msa1136770:exon
GATGGAAGATAAGGAATGTG+AGG 0.576599 7_4:-5534375 None:intergenic
AATTACATTTCATCTTTGGG+AGG 0.577037 7_4:-5536580 None:intergenic
GTGTTGATGATTGTGATCTA+CGG 0.584292 7_4:-5536399 None:intergenic
GGAAGATAAGGAATGTGAGG+TGG 0.589140 7_4:-5534372 None:intergenic
CCTTCAAAGAGTTAACCGCC+AGG 0.591371 7_4:-5536291 None:intergenic
TGGGATTACAACATTGAGCA+AGG 0.596838 7_4:-5536005 None:intergenic
GTGAGCGTCTTAAGGTTGAA+AGG 0.597321 7_4:-5534560 None:intergenic
AGTGTCAAACAATTAAGCAA+TGG 0.602769 7_4:-5536784 None:intergenic
AGGTACTTCCAGGTACTGCA+GGG 0.609643 7_4:-5535201 None:intergenic
ATTGGAGAGACTAAAGGGTA+GGG 0.611399 7_4:-5534507 None:intergenic
TGTCATCGGAAACTCGAGGA+TGG 0.615104 7_4:-5534407 None:intergenic
AGAATGAGAGACATTAGTGA+TGG 0.615201 7_4:+5536844 Msa1136770:three_prime_UTR
TGCCGACCAAACAACAGCAA+AGG 0.622540 7_4:-5536041 None:intergenic
TTTGGAGATTGATGGGAATG+TGG 0.629488 7_4:+5535317 Msa1136770:CDS
AAGGGTAGGGTACCCTACAA+AGG 0.641142 7_4:-5534494 None:intergenic
TTTAAATGAAAATTAAACAG+TGG 0.642441 7_4:-5536754 None:intergenic
AATGATGTGTCCAAACAATG+AGG 0.646677 7_4:-5534328 None:intergenic
TCAATCTCCAAAGATCAGGT+TGG 0.648619 7_4:-5535306 None:intergenic
TGTGAGGTGGAGTAGTGACT+AGG 0.655347 7_4:-5534359 None:intergenic
TATGCATCAATGTTGTTGGG+TGG 0.664299 7_4:+5535250 Msa1136770:CDS
CGTTAATTAAGAATTTAAGG+TGG 0.671556 7_4:+5534303 Msa1136770:five_prime_UTR
GACTAGTTGGCCCAACCTGG+CGG 0.672800 7_4:+5536276 Msa1136770:exon
GGGATTACAACATTGAGCAA+GGG 0.677230 7_4:-5536004 None:intergenic
CAGCTGCAACCTTTGCACCG+AGG 0.683525 7_4:+5535158 Msa1136770:CDS
AGATCACAATCATCAACACA+AGG 0.704089 7_4:+5536403 Msa1136770:three_prime_UTR
AAGGATGAAAGAATTCGGCG+TGG 0.714240 7_4:+5536422 Msa1136770:three_prime_UTR
ATTGTTTGGACACATCATTG+CGG 0.725403 7_4:+5534332 Msa1136770:five_prime_UTR
CATTGAGCAAGGGAACTAGG+AGG 0.737552 7_4:-5535994 None:intergenic
AAGTTGTCATCGGAAACTCG+AGG 0.750720 7_4:-5534411 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCATTTCAAATCATATTTTA+AGG + chr7_4:5534751-5534770 Msa1136770:intron 15.0%
!!! CTTTTCTAAAAATTGATTAA+GGG + chr7_4:5534798-5534817 Msa1136770:intron 15.0%
!! TTCAAAATCAAGATAAAAAA+TGG - chr7_4:5535375-5535394 None:intergenic 15.0%
!! TAAATATGAGAAAGAATATT+AGG + chr7_4:5535498-5535517 Msa1136770:intron 15.0%
!! TTTAAATGAAAATTAAACAG+TGG - chr7_4:5536757-5536776 None:intergenic 15.0%
!! CACCTTAAATTCTTAATTAA+CGG - chr7_4:5534305-5534324 None:intergenic 20.0%
!!! TTTTTAAGTTCTTTGTCTAT+TGG - chr7_4:5534690-5534709 None:intergenic 20.0%
!! AATAGACAAAGAACTTAAAA+AGG + chr7_4:5534689-5534708 Msa1136770:CDS 20.0%
!!! TGATTTGAAATGAAAATTGA+AGG - chr7_4:5534744-5534763 None:intergenic 20.0%
!!! AGCATAGATTTTTACAAAAT+GGG - chr7_4:5534780-5534799 None:intergenic 20.0%
!!! AAGCATAGATTTTTACAAAA+TGG - chr7_4:5534781-5534800 None:intergenic 20.0%
!!! GCTTTTCTAAAAATTGATTA+AGG + chr7_4:5534797-5534816 Msa1136770:intron 20.0%
!! ACACAATCATATATATGATA+AGG + chr7_4:5534961-5534980 Msa1136770:intron 20.0%
!! CACAATCATATATATGATAA+GGG + chr7_4:5534962-5534981 Msa1136770:intron 20.0%
!! ATTAGAAAGATAGAGAAAAA+TGG + chr7_4:5535083-5535102 Msa1136770:intron 20.0%
!!! ATGTTTGTTTTTGAATTGAT+AGG + chr7_4:5535123-5535142 Msa1136770:intron 20.0%
!! AAATCAAGATAAAAAATGGT+AGG - chr7_4:5535371-5535390 None:intergenic 20.0%
!! TTCTTTCTCATATTTACAAA+AGG - chr7_4:5535494-5535513 None:intergenic 20.0%
!! CTAAATTACATTTCATCTTT+GGG - chr7_4:5536586-5536605 None:intergenic 20.0%
!! ACTAAATTACATTTCATCTT+TGG - chr7_4:5536587-5536606 None:intergenic 20.0%
! TAAATTCTTAATTAACGGTG+TGG - chr7_4:5534300-5534319 None:intergenic 25.0%
! CACCGTTAATTAAGAATTTA+AGG + chr7_4:5534300-5534319 Msa1136770:five_prime_UTR 25.0%
! CGTTAATTAAGAATTTAAGG+TGG + chr7_4:5534303-5534322 Msa1136770:five_prime_UTR 25.0%
!!! TTCTGAAATTAAGTTGTCAT+CGG - chr7_4:5534424-5534443 None:intergenic 25.0%
!!! TGTTCATCTTTTTTCTTTTG+GGG - chr7_4:5534449-5534468 None:intergenic 25.0%
!!! GTGTTCATCTTTTTTCTTTT+GGG - chr7_4:5534450-5534469 None:intergenic 25.0%
!!! AGTGTTCATCTTTTTTCTTT+TGG - chr7_4:5534451-5534470 None:intergenic 25.0%
! ATTGAAGGATTATACAAAGA+TGG - chr7_4:5534729-5534748 None:intergenic 25.0%
! TTGAAAACAGCTTATTATCA+TGG - chr7_4:5534908-5534927 None:intergenic 25.0%
!!! TTTGTTTTTGAATTGATAGG+TGG + chr7_4:5535126-5535145 Msa1136770:intron 25.0%
! AACTTCAAAAACAGTATACA+AGG - chr7_4:5535224-5535243 None:intergenic 25.0%
! AATTACAAGCTAAATTCGAT+GGG - chr7_4:5535550-5535569 None:intergenic 25.0%
!!! TATGTTAATTTGTCACCATT+GGG - chr7_4:5535641-5535660 None:intergenic 25.0%
!!! ATATGTTAATTTGTCACCAT+TGG - chr7_4:5535642-5535661 None:intergenic 25.0%
! AATTGCTATGATTCTTTACT+TGG + chr7_4:5535861-5535880 Msa1136770:intron 25.0%
! CTTTACTTGGAGTAAAAAAT+TGG + chr7_4:5535874-5535893 Msa1136770:intron 25.0%
!! TTTAGTTTATTGCTCATTAG+AGG - chr7_4:5536129-5536148 None:intergenic 25.0%
!! ATCGTCAAATATTGATAACA+TGG - chr7_4:5536217-5536236 None:intergenic 25.0%
! GATGAAATGTAATTTAGTCA+TGG + chr7_4:5536589-5536608 Msa1136770:three_prime_UTR 25.0%
!!! TCTCAATTTTAATTTTCGTC+TGG - chr7_4:5536673-5536692 None:intergenic 25.0%
!!! TTCATCTTTTTTCTTTTGGG+GGG - chr7_4:5534447-5534466 None:intergenic 30.0%
!!! GTTCATCTTTTTTCTTTTGG+GGG - chr7_4:5534448-5534467 None:intergenic 30.0%
! AAAGGTAATGGTTTGAAGAA+TGG - chr7_4:5534479-5534498 None:intergenic 30.0%
TTCAAACCATTACCTTTGTA+GGG + chr7_4:5534482-5534501 Msa1136770:CDS 30.0%
TTTGAATTGGAGAGACTAAA+GGG - chr7_4:5534515-5534534 None:intergenic 30.0%
!!! TTGGTTTTGTTGGTTTGAAT+TGG - chr7_4:5534528-5534547 None:intergenic 30.0%
TACAACTTCTTCATTTGAAG+TGG - chr7_4:5534604-5534623 None:intergenic 30.0%
GACAAAGAACTTAAAAAGGT+TGG + chr7_4:5534693-5534712 Msa1136770:intron 30.0%
ACAGCTTAATTAAGCACTTA+TGG - chr7_4:5534994-5535013 None:intergenic 30.0%
GTGCTTAATTAAGCTGTTTA+TGG + chr7_4:5534997-5535016 Msa1136770:intron 30.0%
ATTAAGCTGTTTATGGAAAC+AGG + chr7_4:5535004-5535023 Msa1136770:intron 30.0%
TTAAGCTGTTTATGGAAACA+GGG + chr7_4:5535005-5535024 Msa1136770:intron 30.0%
CAATTACAAGCTAAATTCGA+TGG - chr7_4:5535551-5535570 None:intergenic 30.0%
GTAATACTCAAGTCTAACAT+TGG - chr7_4:5535619-5535638 None:intergenic 30.0%
GGTGACAAATTAACATATCT+AGG + chr7_4:5535644-5535663 Msa1136770:intron 30.0%
CAAAGGACTTCAAAAAGAAT+GGG - chr7_4:5536027-5536046 None:intergenic 30.0%
GCAGATATAATAGCTTTCTT+TGG + chr7_4:5536061-5536080 Msa1136770:CDS 30.0%
AACACAAGGATGAAAGAATT+CGG + chr7_4:5536417-5536436 Msa1136770:three_prime_UTR 30.0%
AATTACATTTCATCTTTGGG+AGG - chr7_4:5536583-5536602 None:intergenic 30.0%
!!! ATGATCTGTATCACTGATTT+TGG + chr7_4:5536624-5536643 Msa1136770:three_prime_UTR 30.0%
AGTGTCAAACAATTAAGCAA+TGG - chr7_4:5536787-5536806 None:intergenic 30.0%
AATGATGTGTCCAAACAATG+AGG - chr7_4:5534331-5534350 None:intergenic 35.0%
ATTGTTTGGACACATCATTG+CGG + chr7_4:5534332-5534351 Msa1136770:five_prime_UTR 35.0%
TGATGAGAAGATGGAAGATA+AGG - chr7_4:5534387-5534406 None:intergenic 35.0%
CTTCAAACCATTACCTTTGT+AGG + chr7_4:5534481-5534500 Msa1136770:CDS 35.0%
GTTTGAATTGGAGAGACTAA+AGG - chr7_4:5534516-5534535 None:intergenic 35.0%
!! CTTAAGGTTGAAAGGTACTT+TGG - chr7_4:5534555-5534574 None:intergenic 35.0%
TATTGGAGTAGAAAAAGCAG+AGG - chr7_4:5534673-5534692 None:intergenic 35.0%
!! TGATCACTTTTCAGACTATC+TGG + chr7_4:5534859-5534878 Msa1136770:intron 35.0%
!! GATCACTTTTCAGACTATCT+GGG + chr7_4:5534860-5534879 Msa1136770:intron 35.0%
! ATGGCATAGACATTTTCCAT+GGG - chr7_4:5534889-5534908 None:intergenic 35.0%
TAAGCTGTTTATGGAAACAG+GGG + chr7_4:5535006-5535025 Msa1136770:intron 35.0%
! ATGTTGCTTGAGAGTAAATG+AGG + chr7_4:5535058-5535077 Msa1136770:intron 35.0%
! TGTTGCTTGAGAGTAAATGA+GGG + chr7_4:5535059-5535078 Msa1136770:intron 35.0%
GAACTTACTGAACATCCAAA+TGG - chr7_4:5535344-5535363 None:intergenic 35.0%
TTGCATAAATGAACAAGTGC+TGG + chr7_4:5535397-5535416 Msa1136770:intron 35.0%
!! TAAATGAACAAGTGCTGGAA+TGG + chr7_4:5535402-5535421 Msa1136770:intron 35.0%
ACATTCAGCAGAATGATAAC+TGG - chr7_4:5535442-5535461 None:intergenic 35.0%
CTGCTGAATGTTTGATTGAT+CGG + chr7_4:5535451-5535470 Msa1136770:intron 35.0%
TAGACTTGAGTATTACCCAA+TGG + chr7_4:5535623-5535642 Msa1136770:intron 35.0%
TAAGCTAGATAAAAGGCCTA+AGG - chr7_4:5535742-5535761 None:intergenic 35.0%
CCACACATAAGCTAGATAAA+AGG - chr7_4:5535749-5535768 None:intergenic 35.0%
!! CCTTTTATCTAGCTTATGTG+TGG + chr7_4:5535746-5535765 Msa1136770:intron 35.0%
AGCAATTAGATCTTGCAAGA+AGG - chr7_4:5535848-5535867 None:intergenic 35.0%
GCAAAGGACTTCAAAAAGAA+TGG - chr7_4:5536028-5536047 None:intergenic 35.0%
!! CTTTCTTTGGAATGTATGCA+TGG + chr7_4:5536074-5536093 Msa1136770:CDS 35.0%
! GAAGGTACATACGATTTCTT+AGG + chr7_4:5536096-5536115 Msa1136770:intron 35.0%
! GTTGACTCTTGAATTTCTCA+AGG + chr7_4:5536317-5536336 Msa1136770:three_prime_UTR 35.0%
!! GTGTTGATGATTGTGATCTA+CGG - chr7_4:5536402-5536421 None:intergenic 35.0%
AGATCACAATCATCAACACA+AGG + chr7_4:5536403-5536422 Msa1136770:three_prime_UTR 35.0%
AGAATGAGAGACATTAGTGA+TGG + chr7_4:5536844-5536863 Msa1136770:three_prime_UTR 35.0%
TGATGGCCATGAATTATTGA+AGG + chr7_4:5536861-5536880 Msa1136770:three_prime_UTR 35.0%
GATGGTCCTTCAATAATTCA+TGG - chr7_4:5536870-5536889 None:intergenic 35.0%
TAAGGTGGTTCCTCATTGTT+TGG + chr7_4:5534318-5534337 Msa1136770:five_prime_UTR 40.0%
GATGGAAGATAAGGAATGTG+AGG - chr7_4:5534378-5534397 None:intergenic 40.0%
ATTGGAGAGACTAAAGGGTA+GGG - chr7_4:5534510-5534529 None:intergenic 40.0%
AATTGGAGAGACTAAAGGGT+AGG - chr7_4:5534511-5534530 None:intergenic 40.0%
!!! CTTTGGAAGGTTGGTTTTGT+TGG - chr7_4:5534538-5534557 None:intergenic 40.0%
!! TGAAAGGTACTTTGGAAGGT+TGG - chr7_4:5534547-5534566 None:intergenic 40.0%
!! AGGTTGAAAGGTACTTTGGA+AGG - chr7_4:5534551-5534570 None:intergenic 40.0%
! TTTGAAGTGGCACATGCAAT+GGG - chr7_4:5534591-5534610 None:intergenic 40.0%
! ATTTGAAGTGGCACATGCAA+TGG - chr7_4:5534592-5534611 None:intergenic 40.0%
AGTGCTTTCTTCATTGGTGT+TGG - chr7_4:5534649-5534668 None:intergenic 40.0%
!! AGAGGAAGTGCTTTCTTCAT+TGG - chr7_4:5534655-5534674 None:intergenic 40.0%
! CATGGCATAGACATTTTCCA+TGG - chr7_4:5534890-5534909 None:intergenic 40.0%
AAGCTGTTTATGGAAACAGG+GGG + chr7_4:5535007-5535026 Msa1136770:intron 40.0%
! ACAGTATACAAGGTACTTCC+AGG - chr7_4:5535214-5535233 None:intergenic 40.0%
AGCGTATGCATCAATGTTGT+TGG + chr7_4:5535246-5535265 Msa1136770:CDS 40.0%
GCGTATGCATCAATGTTGTT+GGG + chr7_4:5535247-5535266 Msa1136770:CDS 40.0%
TATGCATCAATGTTGTTGGG+TGG + chr7_4:5535250-5535269 Msa1136770:CDS 40.0%
!! AAAGATCAGGTTGGTCTGAA+GGG - chr7_4:5535300-5535319 None:intergenic 40.0%
TCAATCTCCAAAGATCAGGT+TGG - chr7_4:5535309-5535328 None:intergenic 40.0%
! ACCTGATCTTTGGAGATTGA+TGG + chr7_4:5535309-5535328 Msa1136770:CDS 40.0%
! CCTGATCTTTGGAGATTGAT+GGG + chr7_4:5535310-5535329 Msa1136770:CDS 40.0%
TTTGGAGATTGATGGGAATG+TGG + chr7_4:5535317-5535336 Msa1136770:CDS 40.0%
! CGTCTTACAAGTCTGGTTTA+TGG - chr7_4:5535712-5535731 None:intergenic 40.0%
TAAACCAGACTTGTAAGACG+AGG + chr7_4:5535712-5535731 Msa1136770:intron 40.0%
GGGATTACAACATTGAGCAA+GGG - chr7_4:5536007-5536026 None:intergenic 40.0%
TGGGATTACAACATTGAGCA+AGG - chr7_4:5536008-5536027 None:intergenic 40.0%
!! TGAAGTCCTTTGCTGTTGTT+TGG + chr7_4:5536035-5536054 Msa1136770:CDS 40.0%
!! CTTTGGAATGTATGCATGGA+AGG + chr7_4:5536078-5536097 Msa1136770:CDS 40.0%
! AGGTGCTTTTGTGTCTACTA+GGG + chr7_4:5536452-5536471 Msa1136770:three_prime_UTR 40.0%
GGAAGATAAGGAATGTGAGG+TGG - chr7_4:5534375-5534394 None:intergenic 45.0%
AAGTTGTCATCGGAAACTCG+AGG - chr7_4:5534414-5534433 None:intergenic 45.0%
! AGGGTACCCTACAAAGGTAA+TGG - chr7_4:5534491-5534510 None:intergenic 45.0%
GTGAGCGTCTTAAGGTTGAA+AGG - chr7_4:5534563-5534582 None:intergenic 45.0%
AGCTGTTTATGGAAACAGGG+GGG + chr7_4:5535008-5535027 Msa1136770:intron 45.0%
TCAAAAAACCCTGCAGTACC+TGG + chr7_4:5535193-5535212 Msa1136770:CDS 45.0%
!! CAAAGATCAGGTTGGTCTGA+AGG - chr7_4:5535301-5535320 None:intergenic 45.0%
CTTCAGACCAACCTGATCTT+TGG + chr7_4:5535299-5535318 Msa1136770:CDS 45.0%
CCCATCAATCTCCAAAGATC+AGG - chr7_4:5535313-5535332 None:intergenic 45.0%
TGATGGGAATGTGGTCCATT+TGG + chr7_4:5535326-5535345 Msa1136770:CDS 45.0%
CAATCCTCGTCTTACAAGTC+TGG - chr7_4:5535719-5535738 None:intergenic 45.0%
TGTAAGACGAGGATTGCCTT+AGG + chr7_4:5535723-5535742 Msa1136770:intron 45.0%
GAAGGAGCTGGAACAACTAT+TGG - chr7_4:5535830-5535849 None:intergenic 45.0%
TAGATCTTGCAAGAAGGAGC+TGG - chr7_4:5535842-5535861 None:intergenic 45.0%
CAACATTGAGCAAGGGAACT+AGG - chr7_4:5536000-5536019 None:intergenic 45.0%
!! GTCCTTTGCTGTTGTTTGGT+CGG + chr7_4:5536039-5536058 Msa1136770:CDS 45.0%
! GTCTTCCTTTTCTTGCAGCT+TGG + chr7_4:5536237-5536256 Msa1136770:intron 45.0%
! TCCTTTTCTTGCAGCTTGGA+TGG + chr7_4:5536241-5536260 Msa1136770:intron 45.0%
AAAGAGTTAACCGCCAGGTT+GGG - chr7_4:5536289-5536308 None:intergenic 45.0%
AAGGATGAAAGAATTCGGCG+TGG + chr7_4:5536422-5536441 Msa1136770:three_prime_UTR 45.0%
!! CTAGTAGACACAAAAGCACC+TGG - chr7_4:5536453-5536472 None:intergenic 45.0%
! CAGGTGCTTTTGTGTCTACT+AGG + chr7_4:5536451-5536470 Msa1136770:three_prime_UTR 45.0%
TGTGTCTACTAGGGAGTTAG+AGG + chr7_4:5536461-5536480 Msa1136770:three_prime_UTR 45.0%
ACTAGGGAGTTAGAGGTCAA+AGG + chr7_4:5536468-5536487 Msa1136770:three_prime_UTR 45.0%
TGTGAGGTGGAGTAGTGACT+AGG - chr7_4:5534362-5534381 None:intergenic 50.0%
! CGAGGATGGTGATGAGAAGA+TGG - chr7_4:5534396-5534415 None:intergenic 50.0%
TGTCATCGGAAACTCGAGGA+TGG - chr7_4:5534410-5534429 None:intergenic 50.0%
! AAGGGTAGGGTACCCTACAA+AGG - chr7_4:5534497-5534516 None:intergenic 50.0%
GGGATAAGGTGAGCGTCTTA+AGG - chr7_4:5534571-5534590 None:intergenic 50.0%
GTGGCACATGCAATGGGATA+AGG - chr7_4:5534585-5534604 None:intergenic 50.0%
CAGACTATCTGGGTAACCCA+TGG + chr7_4:5534870-5534889 Msa1136770:intron 50.0%
ACAGGGGGGTTCACTTAGAA+AGG + chr7_4:5535022-5535041 Msa1136770:intron 50.0%
TTTGATGCCGTTGAAGCCCT+CGG - chr7_4:5535178-5535197 None:intergenic 50.0%
! AGGTACTTCCAGGTACTGCA+GGG - chr7_4:5535204-5535223 None:intergenic 50.0%
! AAGGTACTTCCAGGTACTGC+AGG - chr7_4:5535205-5535224 None:intergenic 50.0%
CATTGAGCAAGGGAACTAGG+AGG - chr7_4:5535997-5536016 None:intergenic 50.0%
TGCCGACCAAACAACAGCAA+AGG - chr7_4:5536044-5536063 None:intergenic 50.0%
GCCATCCAAGCTGCAAGAAA+AGG - chr7_4:5536245-5536264 None:intergenic 50.0%
GCTTGGATGGCTCCAGAAAA+CGG + chr7_4:5536254-5536273 Msa1136770:intron 50.0%
!! GCTCCAGAAAACGGACTAGT+TGG + chr7_4:5536263-5536282 Msa1136770:exon 50.0%
CAAAGAGTTAACCGCCAGGT+TGG - chr7_4:5536290-5536309 None:intergenic 50.0%
CCTTCAAAGAGTTAACCGCC+AGG - chr7_4:5536294-5536313 None:intergenic 50.0%
CCTGGCGGTTAACTCTTTGA+AGG + chr7_4:5536291-5536310 Msa1136770:three_prime_UTR 50.0%
GAATTCGGCGTGGAAATTCC+AGG + chr7_4:5536432-5536451 Msa1136770:three_prime_UTR 50.0%
AGCTGCAACCTTTGCACCGA+GGG + chr7_4:5535159-5535178 Msa1136770:CDS 55.0%
CTTTGCACCGAGGGCTTCAA+CGG + chr7_4:5535168-5535187 Msa1136770:CDS 55.0%
CAATCTCGAGCTCGCAAGGA+AGG - chr7_4:5535938-5535957 None:intergenic 55.0%
TGAGCAATCTCGAGCTCGCA+AGG - chr7_4:5535942-5535961 None:intergenic 55.0%
! GGGCCAACTAGTCCGTTTTC+TGG - chr7_4:5536269-5536288 None:intergenic 55.0%
CAGCTGCAACCTTTGCACCG+AGG + chr7_4:5535158-5535177 Msa1136770:CDS 60.0%
! CGTTGAAGCCCTCGGTGCAA+AGG - chr7_4:5535170-5535189 None:intergenic 60.0%
!! ACGGACTAGTTGGCCCAACC+TGG + chr7_4:5536273-5536292 Msa1136770:exon 60.0%
! GACTAGTTGGCCCAACCTGG+CGG + chr7_4:5536276-5536295 Msa1136770:exon 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 5534282 5536897 5534282 ID=Msa1136770;Name=Msa1136770
chr7_4 mRNA 5534282 5536897 5534282 ID=Msa1136770-mRNA-1;Parent=Msa1136770;Name=Msa1136770-mRNA-1;_AED=0.11;_eAED=0.11;_QI=180|1|1|1|1|1|4|616|218
chr7_4 exon 5534282 5534710 5534282 ID=Msa1136770-mRNA-1:exon:1430;Parent=Msa1136770-mRNA-1
chr7_4 exon 5535145 5535355 5535145 ID=Msa1136770-mRNA-1:exon:1431;Parent=Msa1136770-mRNA-1
chr7_4 exon 5535930 5536099 5535930 ID=Msa1136770-mRNA-1:exon:1432;Parent=Msa1136770-mRNA-1
chr7_4 exon 5536255 5536897 5536255 ID=Msa1136770-mRNA-1:exon:1433;Parent=Msa1136770-mRNA-1
chr7_4 five_prime_UTR 5534282 5534461 5534282 ID=Msa1136770-mRNA-1:five_prime_utr;Parent=Msa1136770-mRNA-1
chr7_4 CDS 5534462 5534710 5534462 ID=Msa1136770-mRNA-1:cds;Parent=Msa1136770-mRNA-1
chr7_4 CDS 5535145 5535355 5535145 ID=Msa1136770-mRNA-1:cds;Parent=Msa1136770-mRNA-1
chr7_4 CDS 5535930 5536099 5535930 ID=Msa1136770-mRNA-1:cds;Parent=Msa1136770-mRNA-1
chr7_4 CDS 5536255 5536281 5536255 ID=Msa1136770-mRNA-1:cds;Parent=Msa1136770-mRNA-1
chr7_4 three_prime_UTR 5536282 5536897 5536282 ID=Msa1136770-mRNA-1:three_prime_utr;Parent=Msa1136770-mRNA-1
Gene Sequence

>Msa1136770

ATGAACACTTTAATCCATTCTTCAAACCATTACCTTTGTAGGGTACCCTACCCTTTAGTCTCTCCAATTCAAACCAACAAAACCAACCTTCCAAAGTACCTTTCAACCTTAAGACGCTCACCTTATCCCATTGCATGTGCCACTTCAAATGAAGAAGTTGTAGAAGAGATTAAAGTAGTTGAATCCAACACCAATGAAGAAAGCACTTCCTCTGCTTTTTCTACTCCAATAGACAAAGAACTTAAAAAGGTGGCTCAGAAGACAGCTGCAACCTTTGCACCGAGGGCTTCAACGGCATCAAAAAACCCTGCAGTACCTGGAAGTACCTTGTATACTGTTTTTGAAGTTCAAGCGTATGCATCAATGTTGTTGGGTGGAGCTTTGTCTTTTAATCTCATTTTCCCTTCAGACCAACCTGATCTTTGGAGATTGATGGGAATGTGGTCCATTTGGATGTTCACAATTCCTTCCTTGCGAGCTCGAGATTGCTCAAAGAATGAGAAAGAAGCTCTCAACTATCTTTTCCTCCTAGTTCCCTTGCTCAATGTTGTAATCCCATTCTTTTTGAAGTCCTTTGCTGTTGTTTGGTCGGCAGATATAATAGCTTTCTTTGGAATGTATGCATGGAAGCTTGGATGGCTCCAGAAAACGGACTAG

Protein sequence

>Msa1136770

MNTLIHSSNHYLCRVPYPLVSPIQTNKTNLPKYLSTLRRSPYPIACATSNEEVVEEIKVVESNTNEESTSSAFSTPIDKELKKVAQKTAATFAPRASTASKNPAVPGSTLYTVFEVQAYASMLLGGALSFNLIFPSDQPDLWRLMGMWSIWMFTIPSLRARDCSKNEKEALNYLFLLVPLLNVVIPFFLKSFAVVWSADIIAFFGMYAWKLGWLQKTD*