AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0172290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172290 MtrunA17_Chr1g0190941 97.582 579 14 0 1 579 1 579 0.0 1173
Msa0172290 MtrunA17_Chr3g0122151 31.380 529 324 10 41 562 82 578 6.71e-76 251
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172290 AT3G04870.3 83.119 545 86 1 35 579 20 558 0.0 965
Msa0172290 AT3G04870.1 83.119 545 86 1 35 579 20 558 0.0 965
Msa0172290 AT3G04870.4 83.119 545 86 1 35 579 20 558 0.0 965
Msa0172290 AT3G04870.2 83.119 545 86 1 35 579 20 558 0.0 965
Msa0172290 AT4G14210.1 32.179 491 294 9 72 554 93 552 1.50e-72 243
Msa0172290 AT4G14210.3 32.179 491 294 9 72 554 93 552 1.50e-72 243
Msa0172290 AT4G14210.2 32.179 491 294 9 72 554 93 552 1.50e-72 243

Find 184 sgRNAs with CRISPR-Local

Find 487 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAAGTAATCCTGTTCTT+TGG 0.221868 1_4:+57291891 Msa0172290:three_prime_UTR
ATCATTGGAGCTGGGCTTGC+TGG 0.256670 1_4:+57287024 Msa0172290:CDS
GGTTCGGCTTCGTTGCTCTT+TGG 0.276120 1_4:+57285898 Msa0172290:CDS
ATTGAGGGACATACGGAATT+TGG 0.279555 1_4:+57288121 Msa0172290:CDS
CTCTGCATCCCCACCTTAGA+TGG 0.296738 1_4:-57289033 None:intergenic
AGTGGCAAACAATGCAAATA+TGG 0.307203 1_4:-57288828 None:intergenic
CTTGAAATAATTTCTTCATT+TGG 0.308702 1_4:-57290543 None:intergenic
CTCTATCTGTGATGTACTTC+CGG 0.333710 1_4:-57288916 None:intergenic
ATGAAGTAATCCTGTTCTTT+GGG 0.338750 1_4:+57291892 Msa0172290:three_prime_UTR
AAGCTTAAAGTTGCTATCAT+TGG 0.354737 1_4:+57287009 Msa0172290:CDS
TTTAACCACAAATCAGCTTA+AGG 0.358549 1_4:+57287868 Msa0172290:CDS
CGGAAGTACATCACAGATAG+AGG 0.360487 1_4:+57288917 Msa0172290:CDS
GAAAATAGAATTAAGCACTA+TGG 0.361291 1_4:-57285730 None:intergenic
GACTTCTTTAATTCATTGTC+CGG 0.363391 1_4:+57285793 Msa0172290:CDS
GATCCAGTTGCCTATGCCCT+TGG 0.363674 1_4:+57288764 Msa0172290:CDS
TCATTTGGCAAGGGCATGTA+TGG 0.366332 1_4:-57290528 None:intergenic
CCCTCGATGTAATAGTCTTC+AGG 0.368691 1_4:-57289721 None:intergenic
CTTGTGTGTGTGAGTGGTAG+TGG 0.375006 1_4:-57285556 None:intergenic
ACGCGGAAATCACATTGAAA+TGG 0.376818 1_4:+57287361 Msa0172290:CDS
GCTGAAACAGGTTCCATCTA+AGG 0.377434 1_4:+57289020 Msa0172290:intron
GATGGGAGCACTTATGTTAC+AGG 0.378354 1_4:+57289079 Msa0172290:CDS
TGGTCATCTGTTGTTAAAAT+CGG 0.386009 1_4:+57290734 Msa0172290:CDS
AGAGGAACGATAAATTTATA+TGG 0.392972 1_4:-57292146 None:intergenic
AACCCAAGGGCATAGGCAAC+TGG 0.393599 1_4:-57288767 None:intergenic
ATCCAGTTGCCTATGCCCTT+GGG 0.393795 1_4:+57288765 Msa0172290:CDS
ACTCGTGCGTGTGCCACCTT+TGG 0.393846 1_4:-57288726 None:intergenic
GTCAACTGCAGTTGAACTCT+TGG 0.398799 1_4:+57287050 Msa0172290:CDS
TGAGTTGAGTCTAGTATAAG+AGG 0.398814 1_4:+57291811 Msa0172290:exon
GGTATCTTGGCTACGTAGGC+TGG 0.400147 1_4:-57285649 None:intergenic
TTATATGAAATTTGCGGAAA+AGG 0.400377 1_4:+57291857 Msa0172290:three_prime_UTR
GCGATGTCCCTGGAATTAAA+AGG 0.400605 1_4:+57289345 Msa0172290:CDS
TTCGGTCCTCGATAATGTTC+AGG 0.401785 1_4:-57286988 None:intergenic
TTCTGGCTCTTACACAAAAC+AGG 0.401890 1_4:+57290835 Msa0172290:CDS
TCCGGAGGAAATAGTCCTTT+TGG 0.404642 1_4:-57286964 None:intergenic
ATGTTGTTATGTGTAGGAAT+AGG 0.407695 1_4:-57285693 None:intergenic
ATGTCCCTCAATGCACCATC+TGG 0.410123 1_4:-57288110 None:intergenic
ATGGAAGGTGCAACCTTATC+CGG 0.415005 1_4:+57291680 Msa0172290:CDS
CCGTGTAATGGAGCCCCAAC+CGG 0.415657 1_4:-57287833 None:intergenic
AATTACCTTAAGCTGATTTG+TGG 0.418452 1_4:-57287873 None:intergenic
TATTTCAAGAGTAGCGAAAC+AGG 0.418943 1_4:+57290557 Msa0172290:CDS
TGAAGTTTGCCTGCCGGATA+AGG 0.421829 1_4:-57291693 None:intergenic
TCTAGTATAAGAGGAATTTA+CGG 0.422397 1_4:+57291820 Msa0172290:exon
TCAACAAGAGCTCTGACAAC+TGG 0.426518 1_4:-57288086 None:intergenic
CGCGGAAATCACATTGAAAT+GGG 0.426629 1_4:+57287362 Msa0172290:CDS
AACCTTTCAGCATCCGCAAA+AGG 0.426804 1_4:-57288865 None:intergenic
TAGAAATGAGAAGGGTATCT+TGG 0.433777 1_4:-57285662 None:intergenic
ATAAGAGGAATTTACGGATA+AGG 0.436575 1_4:+57291826 Msa0172290:exon
TATGTATCAGACTTATGATA+AGG 0.440470 1_4:+57288034 Msa0172290:intron
AAGGGAAGCCTCGGTCTTAG+TGG 0.441905 1_4:-57288846 None:intergenic
CTGAGATTGGTGAATTTGTC+TGG 0.442653 1_4:-57285617 None:intergenic
ATGTCACACGCCCAAAGAAC+AGG 0.446083 1_4:-57291902 None:intergenic
ACTTCTAAACCTTGAGATGA+TGG 0.448031 1_4:-57290707 None:intergenic
CTCACACCTTTGTAAACAAA+GGG 0.458935 1_4:+57287632 Msa0172290:CDS
AAAGTTGCTATCATTGGAGC+TGG 0.460146 1_4:+57287015 Msa0172290:CDS
CCGGTTGGGGCTCCATTACA+CGG 0.461061 1_4:+57287833 Msa0172290:CDS
ATGATAGCAACTTTAAGCTT+CGG 0.461516 1_4:-57287006 None:intergenic
CTCAAGGTTTAGAAGTGACT+TGG 0.468098 1_4:+57290714 Msa0172290:CDS
TTGCTGGGGCTAGGTGGGTG+CGG 0.471726 1_4:+57287582 Msa0172290:intron
TTGTTTATACTTGTGAAATA+CGG 0.475417 1_4:+57291986 Msa0172290:three_prime_UTR
AATAATTTCTTCATTTGGCA+AGG 0.476215 1_4:-57290538 None:intergenic
ATATCAGCCTGCGATGTCCC+TGG 0.478030 1_4:+57289335 Msa0172290:intron
TCAGCCTATATCTGTGATGC+GGG 0.478524 1_4:+57291713 Msa0172290:CDS
CTGGCATTAACGATACATAA+TGG 0.478659 1_4:-57285430 None:intergenic
AATGCATTTATCCCGTGTAA+TGG 0.479235 1_4:-57287845 None:intergenic
TTTATTTGAGTGGCCCTATC+CGG 0.481283 1_4:+57288897 Msa0172290:CDS
GGGCCACTCAAATAAACATC+TGG 0.481392 1_4:-57288890 None:intergenic
GTAGATGCCACTATTGTCTC+TGG 0.481803 1_4:-57285449 None:intergenic
AGACACATAGCCACAAGGTT+CGG 0.488033 1_4:+57285882 Msa0172290:CDS
CCCATCAGAGTGGAGGGAAA+AGG 0.490856 1_4:+57289373 Msa0172290:CDS
GAAGCCGATGCTTATGTTGC+TGG 0.492399 1_4:+57289230 Msa0172290:CDS
GTCCCTCACGGTACAGAGAT+TGG 0.495906 1_4:-57290757 None:intergenic
TTATGTGTAGGAATAGGAAT+AGG 0.500397 1_4:-57285687 None:intergenic
CTGTGATGTACTTCCGGATA+GGG 0.500954 1_4:-57288910 None:intergenic
ATCAGATGTGTTCTGACGCC+AGG 0.501293 1_4:+57290501 Msa0172290:intron
ACTCGTGCTGGAGATTCTGT+TGG 0.501847 1_4:+57285833 Msa0172290:CDS
AAATATGGTGAGCATGCAAC+GGG 0.505912 1_4:-57288813 None:intergenic
TCACTCTCTGCTACTCGTGC+TGG 0.509176 1_4:+57285821 Msa0172290:CDS
GTAGCAGAGAGTGAAGTTGC+CGG 0.509893 1_4:-57285812 None:intergenic
GAGCTTCTTGCACAGTCTAA+AGG 0.512258 1_4:+57291761 Msa0172290:CDS
AATAGGAATAGAAATGAGAA+GGG 0.514637 1_4:-57285670 None:intergenic
TCACCAGATGTTTATTTGAG+TGG 0.514814 1_4:+57288887 Msa0172290:CDS
GTCAAGTTATATGAAATTTG+CGG 0.517734 1_4:+57291851 Msa0172290:three_prime_UTR
GAATAGGAATAGAAATGAGA+AGG 0.518157 1_4:-57285671 None:intergenic
AAGGGCATGTATGGATCTCC+TGG 0.521092 1_4:-57290519 None:intergenic
CTGGGAGGAGATGCTGAGAT+TGG 0.522712 1_4:-57285630 None:intergenic
TACAGGACTTTCCTTGTCAA+AGG 0.522929 1_4:+57289096 Msa0172290:CDS
CGTGTAATGGAGCCCCAACC+GGG 0.524152 1_4:-57287832 None:intergenic
CCTCGATAATGTTCAGGCTC+CGG 0.524827 1_4:-57286982 None:intergenic
GTACAGTGATCACTTCCTCC+AGG 0.527624 1_4:-57292098 None:intergenic
GATGTGAAAACCGACTTAGT+TGG 0.528115 1_4:-57285763 None:intergenic
TGATCCAGATGGTGCATTGA+GGG 0.528957 1_4:+57288106 Msa0172290:CDS
TCAGACTGGTTTATGTCCAA+AGG 0.529696 1_4:+57288710 Msa0172290:CDS
GCAGTTGAACTCTTGGATCA+AGG 0.530786 1_4:+57287057 Msa0172290:CDS
GTATCTTGGCTACGTAGGCT+GGG 0.531133 1_4:-57285648 None:intergenic
AGATAATAATGAGATAATCC+TGG 0.532859 1_4:+57292080 Msa0172290:three_prime_UTR
ACTTTCATGCCAGCACCAAA+AGG 0.533509 1_4:+57286949 Msa0172290:intron
GCATTAAGAATGACAAAGAC+TGG 0.534103 1_4:-57292032 None:intergenic
TTACTTATGTTGTTATGTGT+AGG 0.537964 1_4:-57285699 None:intergenic
ATAATTTCTTCATTTGGCAA+GGG 0.539005 1_4:-57290537 None:intergenic
ATAGACAATAATAATAGATG+TGG 0.539704 1_4:+57285527 Msa0172290:five_prime_UTR
TGCAACTCAGATACAATGGT+TGG 0.542316 1_4:+57289444 Msa0172290:CDS
CATCCGCAAAAGGGAAGCCT+CGG 0.544863 1_4:-57288855 None:intergenic
CTTTATGATAAATCTGCTGA+TGG 0.545887 1_4:+57289061 Msa0172290:CDS
ACTTTAGTTTGTTAGTTGAG+AGG 0.548901 1_4:-57285593 None:intergenic
GTCAATAAACCCAAGGGCAT+AGG 0.550109 1_4:-57288774 None:intergenic
ACCTTTCAGCATCCGCAAAA+GGG 0.553238 1_4:-57288864 None:intergenic
AGGCAACTGAAGAAAGCTAC+CGG 0.553730 1_4:+57289631 Msa0172290:intron
TCTGTGATGTACTTCCGGAT+AGG 0.554625 1_4:-57288911 None:intergenic
ATGGTGCATTGAGGGACATA+CGG 0.554758 1_4:+57288114 Msa0172290:CDS
GCAACTCAGATACAATGGTT+GGG 0.557255 1_4:+57289445 Msa0172290:CDS
ATTGTTAGTATTGCAGCAAG+TGG 0.561102 1_4:+57291961 Msa0172290:three_prime_UTR
CTGAGTTGCACTGTGACCAC+AGG 0.565771 1_4:-57289431 None:intergenic
ACCAAAAGGACTATTTCCTC+CGG 0.566476 1_4:+57286963 Msa0172290:CDS
AAGTTGCTATCATTGGAGCT+GGG 0.567873 1_4:+57287016 Msa0172290:CDS
TTTAATTCCAGGGACATCGC+AGG 0.571144 1_4:-57289342 None:intergenic
ATAGGCTGAAGTTTGCCTGC+CGG 0.573360 1_4:-57291699 None:intergenic
TCGTTGTTCCCATCATCTCA+AGG 0.573643 1_4:+57290698 Msa0172290:CDS
ATCTCATTATTATCTTAATG+CGG 0.574586 1_4:-57292072 None:intergenic
ACTCACACCTTTGTAAACAA+AGG 0.576174 1_4:+57287631 Msa0172290:CDS
CAAATATGGTGAGCATGCAA+CGG 0.576514 1_4:-57288814 None:intergenic
GTTAATGCCAGAGACAATAG+TGG 0.578029 1_4:+57285442 Msa0172290:five_prime_UTR
TTGTGACTTGTGTGTGTGAG+TGG 0.579486 1_4:-57285562 None:intergenic
TGAATTAAAGAAGTCATCAT+CGG 0.582427 1_4:-57285785 None:intergenic
GAAACAGGTTCCATCTAAGG+TGG 0.582717 1_4:+57289023 Msa0172290:intron
GGCTACCGAGAAGAAAATTG+TGG 0.583615 1_4:+57289208 Msa0172290:intron
AGAATTGGTGGCATTGCGGA+AGG 0.584021 1_4:+57291739 Msa0172290:CDS
CTTCTAAACCTTGAGATGAT+GGG 0.585413 1_4:-57290706 None:intergenic
TAGACAATAATAATAGATGT+GGG 0.585443 1_4:+57285528 Msa0172290:five_prime_UTR
TTCAGCCTATATCTGTGATG+CGG 0.586370 1_4:+57291712 Msa0172290:CDS
TGCAGAATCTAGAAATGTCA+AGG 0.588922 1_4:+57289477 Msa0172290:CDS
AATAACATATACGAACTCGT+TGG 0.589049 1_4:+57289404 Msa0172290:CDS
AGAGCTCTTGTTGATCCAGA+TGG 0.589565 1_4:+57288095 Msa0172290:CDS
TGGACTCAGTGCAAGAGCTA+CGG 0.590603 1_4:-57288066 None:intergenic
ATAGAGAAGGTTGTCTAACC+CGG 0.591839 1_4:-57289650 None:intergenic
CGGTTGGGGCTCCATTACAC+GGG 0.591933 1_4:+57287834 Msa0172290:CDS
AAACAGGTTCCATCTAAGGT+GGG 0.592718 1_4:+57289024 Msa0172290:intron
GGTCTAAATGGATCTTTACC+AGG 0.593355 1_4:-57290779 None:intergenic
CGATAATGTTCAGGCTCCGG+AGG 0.594301 1_4:-57286979 None:intergenic
GGATAACAATCTACTTGTGA+AGG 0.594376 1_4:+57287603 Msa0172290:CDS
GGAAGTACATCACAGATAGA+GGG 0.594388 1_4:+57288918 Msa0172290:CDS
TTGATCCAGATGGTGCATTG+AGG 0.597130 1_4:+57288105 Msa0172290:CDS
AAGGTGCAACCTTATCCGGC+AGG 0.600316 1_4:+57291684 Msa0172290:CDS
ATTGTTTGCCACTAAGACCG+AGG 0.602157 1_4:+57288838 Msa0172290:CDS
CGCAAAGACACATAGCCACA+AGG 0.605752 1_4:+57285877 Msa0172290:CDS
TATCACAGTCAATAAACCCA+AGG 0.605846 1_4:-57288781 None:intergenic
GATTACATAGACAGCATGGA+AGG 0.607021 1_4:+57291665 Msa0172290:CDS
GTTACTCCCATCAGAGTGGA+GGG 0.607848 1_4:+57289367 Msa0172290:CDS
TCTCTGTACCGTGAGGGACC+TGG 0.607923 1_4:+57290761 Msa0172290:CDS
GGGAAGAATTGGTGGCATTG+CGG 0.610606 1_4:+57291735 Msa0172290:CDS
ACTCTTGGATCAAGGACATG+AGG 0.611361 1_4:+57287065 Msa0172290:CDS
TTTATGATAAATCTGCTGAT+GGG 0.613858 1_4:+57289062 Msa0172290:CDS
CAGCCTATATCTGTGATGCG+GGG 0.614951 1_4:+57291714 Msa0172290:CDS
GACTATTACATCGAGGGACA+AGG 0.615874 1_4:+57289727 Msa0172290:CDS
CCTGAAGACTATTACATCGA+GGG 0.618138 1_4:+57289721 Msa0172290:CDS
AACAGGTTCCATCTAAGGTG+GGG 0.618751 1_4:+57289025 Msa0172290:intron
ATGTGTCTTTGCGAAACGTG+TGG 0.618912 1_4:-57285867 None:intergenic
ATCACAGTCAATAAACCCAA+GGG 0.619021 1_4:-57288780 None:intergenic
AGCCTATATCTGTGATGCGG+GGG 0.619252 1_4:+57291715 Msa0172290:CDS
GACTGGTTTATGTCCAAAGG+TGG 0.624860 1_4:+57288713 Msa0172290:CDS
CTAACCGTTGGTACTCATGT+CGG 0.626829 1_4:-57285933 None:intergenic
GGTTACTCCCATCAGAGTGG+AGG 0.630867 1_4:+57289366 Msa0172290:CDS
TCAGGATTACATAGACAGCA+TGG 0.632080 1_4:+57291661 Msa0172290:intron
GTTTCCGACATGAGTACCAA+CGG 0.632950 1_4:+57285929 Msa0172290:CDS
CTAACCAGCAACATAAGCAT+CGG 0.636070 1_4:-57289234 None:intergenic
GGCCAATCTCTGTACCGTGA+GGG 0.636229 1_4:+57290755 Msa0172290:CDS
GATCTTTACCAGGTCCCTCA+CGG 0.638059 1_4:-57290769 None:intergenic
TGTGTCTTTGCGAAACGTGT+GGG 0.639468 1_4:-57285866 None:intergenic
GGCAACTGAAGAAAGCTACC+GGG 0.645085 1_4:+57289632 Msa0172290:intron
CGAACTCGTTGGAGTTCCTG+TGG 0.646603 1_4:+57289415 Msa0172290:CDS
GGAAGTGATCACTGTACAAG+CGG 0.648807 1_4:+57292104 Msa0172290:three_prime_UTR
ACAGTGCAACTCAGATACAA+TGG 0.663291 1_4:+57289440 Msa0172290:CDS
GAAGTACATCACAGATAGAG+GGG 0.664359 1_4:+57288919 Msa0172290:CDS
AGCAACGAAGCCGAACCTTG+TGG 0.668845 1_4:-57285892 None:intergenic
CGGCCAATCTCTGTACCGTG+AGG 0.680928 1_4:+57290754 Msa0172290:CDS
GAAGGGTATCTTGGCTACGT+AGG 0.682032 1_4:-57285653 None:intergenic
AAAGGTTACTCCCATCAGAG+TGG 0.682957 1_4:+57289363 Msa0172290:CDS
TCCTGAAGACTATTACATCG+AGG 0.684522 1_4:+57289720 Msa0172290:CDS
AAAGTATATCACCTTTGACA+AGG 0.686346 1_4:-57289107 None:intergenic
CACACCTTTGTAAACAAAGG+GGG 0.694534 1_4:+57287634 Msa0172290:CDS
CCGGAGCCTGAACATTATCG+AGG 0.697521 1_4:+57286982 Msa0172290:CDS
AAGTACATCACAGATAGAGG+GGG 0.702330 1_4:+57288920 Msa0172290:CDS
TCACACCTTTGTAAACAAAG+GGG 0.705760 1_4:+57287633 Msa0172290:CDS
TAATAATGAGATAATCCTGG+AGG 0.715134 1_4:+57292083 Msa0172290:three_prime_UTR
TCTTGGCTACGTAGGCTGGG+AGG 0.729893 1_4:-57285645 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGTAATTGTATTTATTTT+TGG - chr1_4:57286463-57286482 None:intergenic 10.0%
!! ATATCATAATATATTGAAAT+TGG + chr1_4:57287132-57287151 Msa0172290:intron 10.0%
!! AAATATCATTAAAAGAATAA+CGG - chr1_4:57290605-57290624 None:intergenic 10.0%
!! TTCCATTAACTAAAAAATAT+AGG + chr1_4:57285475-57285494 Msa0172290:five_prime_UTR 15.0%
!!! TACATAAAACCTTATTTATT+TGG + chr1_4:57286617-57286636 Msa0172290:intron 15.0%
!! AATAATCAGGAAAATTTATT+TGG - chr1_4:57288180-57288199 None:intergenic 15.0%
!!! TTTTCCTATAAGTATTTTTT+TGG - chr1_4:57290029-57290048 None:intergenic 15.0%
!! AAAAAAATACTTATAGGAAA+AGG + chr1_4:57290028-57290047 Msa0172290:intron 15.0%
!! AATATTATATGAACATATGT+TGG - chr1_4:57290439-57290458 None:intergenic 15.0%
!! AATAAAATAACAAACTTAGA+GGG - chr1_4:57290475-57290494 None:intergenic 15.0%
!! AAATAAAATAACAAACTTAG+AGG - chr1_4:57290476-57290495 None:intergenic 15.0%
!! GACATATCATAAATATTATA+TGG + chr1_4:57291219-57291238 Msa0172290:intron 15.0%
!! TATCATAAATATTATATGGA+TGG + chr1_4:57291223-57291242 Msa0172290:intron 15.0%
!! CTAGATAAAATAATAAAAGT+CGG - chr1_4:57291616-57291635 None:intergenic 15.0%
!!! GTCCTATATTTTTTAGTTAA+TGG - chr1_4:57285480-57285499 None:intergenic 20.0%
!! ATAGACAATAATAATAGATG+TGG + chr1_4:57285527-57285546 Msa0172290:five_prime_UTR 20.0%
!! TAGACAATAATAATAGATGT+GGG + chr1_4:57285528-57285547 Msa0172290:five_prime_UTR 20.0%
!! ACAAAAAAAAAAAGTTGGAA+GGG - chr1_4:57285969-57285988 None:intergenic 20.0%
!! AACAAAAAAAAAAAGTTGGA+AGG - chr1_4:57285970-57285989 None:intergenic 20.0%
!! GCTAAACAAAAAAAAAAAGT+TGG - chr1_4:57285974-57285993 None:intergenic 20.0%
!!! TGTATTTATTTTTGGAAACT+TGG - chr1_4:57286455-57286474 None:intergenic 20.0%
!! ACAATTACAATATGAATGTT+AGG + chr1_4:57286472-57286491 Msa0172290:intron 20.0%
!! CAATTACAATATGAATGTTA+GGG + chr1_4:57286473-57286492 Msa0172290:intron 20.0%
!! TAAGCTTATCCAAATAAATA+AGG - chr1_4:57286629-57286648 None:intergenic 20.0%
!! TTTGGATAAGCTTAAAAATA+AGG + chr1_4:57286635-57286654 Msa0172290:intron 20.0%
!!! TTTGTCTATTTTTGTATTGA+TGG + chr1_4:57287102-57287121 Msa0172290:intron 20.0%
!! ATTGAAATTGGATGTTATTA+TGG + chr1_4:57287144-57287163 Msa0172290:intron 20.0%
!!! ATGGATTGATATGATAAAAA+TGG - chr1_4:57287539-57287558 None:intergenic 20.0%
!! TTATCATATCAATCCATAAT+CGG + chr1_4:57287542-57287561 Msa0172290:intron 20.0%
!! AAGAAAAATTAATCCGATTA+TGG - chr1_4:57287558-57287577 None:intergenic 20.0%
!! TTATGAATAAACGATAGTTT+CGG + chr1_4:57287759-57287778 Msa0172290:intron 20.0%
!! AATTTGGATAGTTATAGTAA+TGG - chr1_4:57288974-57288993 None:intergenic 20.0%
!!! ATTTAAAATCTTTACATGCT+TGG + chr1_4:57289139-57289158 Msa0172290:intron 20.0%
!! GAAATAAACATTAAGACTTT+CGG - chr1_4:57289184-57289203 None:intergenic 20.0%
!!! ATATTTTGTTTTCAAGAACA+AGG + chr1_4:57289544-57289563 Msa0172290:intron 20.0%
!! AATTACACAATAATGATCAA+AGG - chr1_4:57289582-57289601 None:intergenic 20.0%
!!! GAACTTATATTTAAGATGAT+CGG + chr1_4:57289850-57289869 Msa0172290:intron 20.0%
!! CTTTCCAAAAAAATACTTAT+AGG + chr1_4:57290022-57290041 Msa0172290:intron 20.0%
!! AATACTTTATAAGTTCCTAT+TGG + chr1_4:57290245-57290264 Msa0172290:intron 20.0%
!! CTTGAAATAATTTCTTCATT+TGG - chr1_4:57290546-57290565 None:intergenic 20.0%
!!! TTCATTATCGATTTAGTAAA+TGG + chr1_4:57290624-57290643 Msa0172290:intron 20.0%
!!! TGATTTTAAAAATCGTTATC+AGG + chr1_4:57290670-57290689 Msa0172290:intron 20.0%
!! TCTATAATTTCTTGCATATA+TGG + chr1_4:57290988-57291007 Msa0172290:intron 20.0%
!! GCATATGAAAAAAAAATACA+AGG + chr1_4:57291286-57291305 Msa0172290:intron 20.0%
!! TTGTTTATACTTGTGAAATA+CGG + chr1_4:57291986-57292005 Msa0172290:three_prime_UTR 20.0%
!! ATCTCATTATTATCTTAATG+CGG - chr1_4:57292075-57292094 None:intergenic 20.0%
! AATAGGAATAGAAATGAGAA+GGG - chr1_4:57285673-57285692 None:intergenic 25.0%
! TTACTTATGTTGTTATGTGT+AGG - chr1_4:57285702-57285721 None:intergenic 25.0%
! GAAAATAGAATTAAGCACTA+TGG - chr1_4:57285733-57285752 None:intergenic 25.0%
!!! TTTTGTTTTTCCAACTAAGT+CGG + chr1_4:57285753-57285772 Msa0172290:five_prime_UTR 25.0%
! TGAATTAAAGAAGTCATCAT+CGG - chr1_4:57285788-57285807 None:intergenic 25.0%
!!! TTTTCTAGCATCATGAATTT+TGG + chr1_4:57285999-57286018 Msa0172290:intron 25.0%
!! TGCTTATGTGAAAACAATTT+TGG - chr1_4:57286112-57286131 None:intergenic 25.0%
! CTTAGAAAGCTTATGTAAAT+CGG + chr1_4:57286139-57286158 Msa0172290:intron 25.0%
! TGTAAATCGGATAATTCATA+AGG + chr1_4:57286152-57286171 Msa0172290:intron 25.0%
! TTAAATAAGTCAATCCAAAC+AGG - chr1_4:57286499-57286518 None:intergenic 25.0%
!!! GTTAATTTGTAAATTCTCAC+TGG + chr1_4:57286549-57286568 Msa0172290:intron 25.0%
! TATTATTCATAAGCTTGTCA+AGG - chr1_4:57286599-57286618 None:intergenic 25.0%
!! ATTTTCACATGAATTGTTGA+TGG + chr1_4:57286738-57286757 Msa0172290:intron 25.0%
!! TTTTCACATGAATTGTTGAT+GGG + chr1_4:57286739-57286758 Msa0172290:intron 25.0%
!! GATTTTGCATGAATTGTTAA+TGG + chr1_4:57286784-57286803 Msa0172290:intron 25.0%
!!! GAATTGTTAATGGATTTTGT+TGG + chr1_4:57286794-57286813 Msa0172290:intron 25.0%
! TACAAAAATAGACAAAGAGA+AGG - chr1_4:57287098-57287117 None:intergenic 25.0%
!!! TGTTTACCTTTTTCAATAGT+CGG - chr1_4:57287424-57287443 None:intergenic 25.0%
!!! TATTCTCTTTCCCTATTTTT+TGG + chr1_4:57287481-57287500 Msa0172290:intron 25.0%
! TACAAGTATGCCAAAAAATA+GGG - chr1_4:57287494-57287513 None:intergenic 25.0%
! TATGTATCAGACTTATGATA+AGG + chr1_4:57288034-57288053 Msa0172290:intron 25.0%
!! GTGTAAGAGGATAATATTTT+TGG + chr1_4:57288147-57288166 Msa0172290:intron 25.0%
! CAGGAAAATTTATTTGGAAA+TGG - chr1_4:57288174-57288193 None:intergenic 25.0%
! TTTATGATAAATCTGCTGAT+GGG + chr1_4:57289062-57289081 Msa0172290:CDS 25.0%
!!! TAAGAGCATTTTTGTAAGTT+AGG + chr1_4:57290181-57290200 Msa0172290:intron 25.0%
! ATAATTTCTTCATTTGGCAA+GGG - chr1_4:57290540-57290559 None:intergenic 25.0%
! AATAATTTCTTCATTTGGCA+AGG - chr1_4:57290541-57290560 None:intergenic 25.0%
!! GAAAGAAAGAAATTTTTCAC+TGG - chr1_4:57290818-57290837 None:intergenic 25.0%
! GTGAAAAATTTCTTTCTTTC+TGG + chr1_4:57290818-57290837 Msa0172290:CDS 25.0%
!! TTTTACTCGTAATAGTTTAC+TGG + chr1_4:57291264-57291283 Msa0172290:intron 25.0%
! AATCAACTGGAAAATAAAGT+TGG - chr1_4:57291494-57291513 None:intergenic 25.0%
! AGAAAACATATTGTAATTGC+AGG - chr1_4:57291548-57291567 None:intergenic 25.0%
! TCTAGTATAAGAGGAATTTA+CGG + chr1_4:57291820-57291839 Msa0172290:exon 25.0%
! GTCAAGTTATATGAAATTTG+CGG + chr1_4:57291851-57291870 Msa0172290:three_prime_UTR 25.0%
! TTATATGAAATTTGCGGAAA+AGG + chr1_4:57291857-57291876 Msa0172290:three_prime_UTR 25.0%
! AGATAATAATGAGATAATCC+TGG + chr1_4:57292080-57292099 Msa0172290:three_prime_UTR 25.0%
!! ACTTTAGTTTGTTAGTTGAG+AGG - chr1_4:57285596-57285615 None:intergenic 30.0%
GAATAGGAATAGAAATGAGA+AGG - chr1_4:57285674-57285693 None:intergenic 30.0%
TTATGTGTAGGAATAGGAAT+AGG - chr1_4:57285690-57285709 None:intergenic 30.0%
ATGTTGTTATGTGTAGGAAT+AGG - chr1_4:57285696-57285715 None:intergenic 30.0%
GACTTCTTTAATTCATTGTC+CGG + chr1_4:57285793-57285812 Msa0172290:CDS 30.0%
CGATTTACATAAGCTTTCTA+AGG - chr1_4:57286141-57286160 None:intergenic 30.0%
!! ATTTTTGGAAACTTGGTATC+CGG - chr1_4:57286448-57286467 None:intergenic 30.0%
! ATGATATTCAGGTTCTACAT+GGG + chr1_4:57286838-57286857 Msa0172290:intron 30.0%
TAGGAAATGTTACATAGAGT+TGG - chr1_4:57286904-57286923 None:intergenic 30.0%
! TTGTGTCAAATTTTCAGCTT+AGG - chr1_4:57286923-57286942 None:intergenic 30.0%
ATGATAGCAACTTTAAGCTT+CGG - chr1_4:57287009-57287028 None:intergenic 30.0%
AAGCTTAAAGTTGCTATCAT+TGG + chr1_4:57287009-57287028 Msa0172290:CDS 30.0%
! TGTGTTTTCCTTTGTAATCA+TGG + chr1_4:57287214-57287233 Msa0172290:intron 30.0%
ATTTAGCACCATGATTACAA+AGG - chr1_4:57287225-57287244 None:intergenic 30.0%
AATACATTAGCCAGATATCT+TGG - chr1_4:57287251-57287270 None:intergenic 30.0%
! TTTTCAATGTTCTCTCATTC+AGG + chr1_4:57287280-57287299 Msa0172290:intron 30.0%
! TACGAGTCAAGATCTTTTAT+TGG + chr1_4:57287311-57287330 Msa0172290:CDS 30.0%
! TCTTTTCCGACTATTGAAAA+AGG + chr1_4:57287415-57287434 Msa0172290:CDS 30.0%
GTACAAGTATGCCAAAAAAT+AGG - chr1_4:57287495-57287514 None:intergenic 30.0%
AATGTGAACAAAATGAAGCA+AGG - chr1_4:57287698-57287717 None:intergenic 30.0%
TTTAACCACAAATCAGCTTA+AGG + chr1_4:57287868-57287887 Msa0172290:CDS 30.0%
!! AATTACCTTAAGCTGATTTG+TGG - chr1_4:57287876-57287895 None:intergenic 30.0%
CGAAACAATAGACTTAGATT+TGG - chr1_4:57288343-57288362 None:intergenic 30.0%
TGATGAATTCGACATTAAGA+CGG - chr1_4:57288390-57288409 None:intergenic 30.0%
CGAAACAATAGACTTAGATT+TGG - chr1_4:57288343-57288362 None:intergenic 30.0%
TGATGAATTCGACATTAAGA+CGG - chr1_4:57288390-57288409 None:intergenic 30.0%
CGAAACAATAGACTTAGATT+TGG - chr1_4:57288343-57288362 None:intergenic 30.0%
ATATTGACAAACATGGTACA+AGG - chr1_4:57288366-57288385 None:intergenic 30.0%
AAGACTAGAATTCGACATTA+AGG - chr1_4:57288655-57288674 None:intergenic 30.0%
CTATTAAATGCATTTCTTGC+AGG + chr1_4:57288679-57288698 Msa0172290:intron 30.0%
CACGAGTATTCAAAAAATGT+GGG + chr1_4:57288742-57288761 Msa0172290:CDS 30.0%
AATGAATGAGAACCTACATA+GGG - chr1_4:57289000-57289019 None:intergenic 30.0%
CTTTATGATAAATCTGCTGA+TGG + chr1_4:57289061-57289080 Msa0172290:CDS 30.0%
AAAGTATATCACCTTTGACA+AGG - chr1_4:57289110-57289129 None:intergenic 30.0%
GTCTTAATGTTTATTTCCTC+AGG + chr1_4:57289187-57289206 Msa0172290:intron 30.0%
TGAGATCAATACAAAAACCA+GGG - chr1_4:57289271-57289290 None:intergenic 30.0%
ATGAGATCAATACAAAAACC+AGG - chr1_4:57289272-57289291 None:intergenic 30.0%
ATCAAGTCAATGATAGGTTA+AGG - chr1_4:57289317-57289336 None:intergenic 30.0%
AAAGCAAGAAAAATCTGCAT+CGG - chr1_4:57289680-57289699 None:intergenic 30.0%
TAATTCATGTAGTGCTAGTT+TGG + chr1_4:57289994-57290013 Msa0172290:intron 30.0%
TAGGAACCAAATACTTACAA+TGG + chr1_4:57290200-57290219 Msa0172290:intron 30.0%
AGGAACCAAATACTTACAAT+GGG + chr1_4:57290201-57290220 Msa0172290:intron 30.0%
ATAGTCCCATTGTAAGTATT+TGG - chr1_4:57290209-57290228 None:intergenic 30.0%
CTTTATTAAACGCTACCAAT+AGG - chr1_4:57290263-57290282 None:intergenic 30.0%
ATTGTTGAAAATGACAACAG+TGG - chr1_4:57290301-57290320 None:intergenic 30.0%
TTGCAATGAGAGGAAAAAAA+AGG - chr1_4:57290414-57290433 None:intergenic 30.0%
TGGTCATCTGTTGTTAAAAT+CGG + chr1_4:57290734-57290753 Msa0172290:CDS 30.0%
! AATTTTTCACTGGTGTCTTT+TGG - chr1_4:57290808-57290827 None:intergenic 30.0%
AAACATATGAGACCTTATAG+AGG + chr1_4:57290955-57290974 Msa0172290:intron 30.0%
! ATGAGGTATTTCACATAAGA+TGG - chr1_4:57291134-57291153 None:intergenic 30.0%
! ATTTCCTCGTCACATATTTT+AGG + chr1_4:57291162-57291181 Msa0172290:intron 30.0%
AAAACCTAAAATATGTGACG+AGG - chr1_4:57291169-57291188 None:intergenic 30.0%
TAACAGAAGTTTGTATTAGC+AGG + chr1_4:57291334-57291353 Msa0172290:intron 30.0%
TAATATTCCACTTTCAACTG+AGG + chr1_4:57291403-57291422 Msa0172290:intron 30.0%
GCTTGCTCAAATTTATCAAA+CGG + chr1_4:57291431-57291450 Msa0172290:intron 30.0%
CTGAAATGTTTAATCTGTTC+AGG + chr1_4:57291643-57291662 Msa0172290:intron 30.0%
ATAAGAGGAATTTACGGATA+AGG + chr1_4:57291826-57291845 Msa0172290:exon 30.0%
TATGAAGTAATCCTGTTCTT+TGG + chr1_4:57291891-57291910 Msa0172290:three_prime_UTR 30.0%
ATGAAGTAATCCTGTTCTTT+GGG + chr1_4:57291892-57291911 Msa0172290:three_prime_UTR 30.0%
TAATAATGAGATAATCCTGG+AGG + chr1_4:57292083-57292102 Msa0172290:three_prime_UTR 30.0%
CTGGCATTAACGATACATAA+TGG - chr1_4:57285433-57285452 None:intergenic 35.0%
!! TAGAAATGAGAAGGGTATCT+TGG - chr1_4:57285665-57285684 None:intergenic 35.0%
GGAAATCTATTACTAACCGT+TGG - chr1_4:57285948-57285967 None:intergenic 35.0%
!! ACGTTTAATTTTGCTGTGCT+TGG + chr1_4:57286026-57286045 Msa0172290:intron 35.0%
AGAGTAGAGTAGCACATTAT+GGG - chr1_4:57286246-57286265 None:intergenic 35.0%
TAGAGTAGAGTAGCACATTA+TGG - chr1_4:57286247-57286266 None:intergenic 35.0%
AATTACAATATGAAACCCCC+TGG + chr1_4:57286274-57286293 Msa0172290:intron 35.0%
ATTACAATATGAAACCCCCT+GGG + chr1_4:57286275-57286294 Msa0172290:intron 35.0%
AGATGTTGTAAGACAGACTT+GGG + chr1_4:57286305-57286324 Msa0172290:intron 35.0%
GGACAAAAATTGTTAACACC+CGG - chr1_4:57286355-57286374 None:intergenic 35.0%
CTAAGGACTAACTAATCTGA+GGG - chr1_4:57286424-57286443 None:intergenic 35.0%
TCGTTCTGTTCGTATATCAA+GGG - chr1_4:57286674-57286693 None:intergenic 35.0%
TTCGTTCTGTTCGTATATCA+AGG - chr1_4:57286675-57286694 None:intergenic 35.0%
TATACGAACAGAACGAACTA+TGG + chr1_4:57286678-57286697 Msa0172290:intron 35.0%
! GATGATATTCAGGTTCTACA+TGG + chr1_4:57286837-57286856 Msa0172290:intron 35.0%
! GAGTCAAGATCTTTTATTGG+TGG + chr1_4:57287314-57287333 Msa0172290:CDS 35.0%
!! TCTTTTATTGGTGGCAAAGT+TGG + chr1_4:57287323-57287342 Msa0172290:CDS 35.0%
!! GGTTCTTTTGTTGATAAACG+CGG + chr1_4:57287344-57287363 Msa0172290:CDS 35.0%
! ATGGGATTGCATGTTTTCTT+TGG + chr1_4:57287380-57287399 Msa0172290:CDS 35.0%
AAAGAGAATACGACTGAAGA+AGG - chr1_4:57287471-57287490 None:intergenic 35.0%
! TTAATTTTTCTTCGCCTTGC+TGG + chr1_4:57287566-57287585 Msa0172290:intron 35.0%
! TAATTTTTCTTCGCCTTGCT+GGG + chr1_4:57287567-57287586 Msa0172290:intron 35.0%
GGATAACAATCTACTTGTGA+AGG + chr1_4:57287603-57287622 Msa0172290:CDS 35.0%
ACTCACACCTTTGTAAACAA+AGG + chr1_4:57287631-57287650 Msa0172290:CDS 35.0%
CTCACACCTTTGTAAACAAA+GGG + chr1_4:57287632-57287651 Msa0172290:CDS 35.0%
TCACACCTTTGTAAACAAAG+GGG + chr1_4:57287633-57287652 Msa0172290:CDS 35.0%
TCATAAAAGTAGTGCTCTGA+TGG - chr1_4:57287745-57287764 None:intergenic 35.0%
AATGCATTTATCCCGTGTAA+TGG - chr1_4:57287848-57287867 None:intergenic 35.0%
AGCTAAGGAGACAAATAATC+AGG - chr1_4:57288193-57288212 None:intergenic 35.0%
!! TGTCTCCTTAGCTTTGTATT+TGG + chr1_4:57288200-57288219 Msa0172290:intron 35.0%
TACAAAGGAGCAAATGGAAA+CGG + chr1_4:57288293-57288312 Msa0172290:intron 35.0%
! AAATGGAAACGGAACTTTTG+AGG + chr1_4:57288304-57288323 Msa0172290:intron 35.0%
! TTAGATTTGGTTTACAGCCA+AGG - chr1_4:57288330-57288349 None:intergenic 35.0%
AGACGGAATATTGACAAACA+TGG - chr1_4:57288373-57288392 None:intergenic 35.0%
TACAAAGGAGCAAATGGAAA+CGG + chr1_4:57288293-57288312 Msa0172290:intron 35.0%
! AAATGGAAACGGAACTTTTG+AGG + chr1_4:57288304-57288323 Msa0172290:intron 35.0%
! TTAGATTTGGTTTACAGCCA+AGG - chr1_4:57288330-57288349 None:intergenic 35.0%
AGACGGAATATTGACAAACA+TGG - chr1_4:57288373-57288392 None:intergenic 35.0%
TACAAAGGAGCAAATGGAAA+CGG + chr1_4:57288293-57288312 Msa0172290:intron 35.0%
! AAATGGAAACGGAACTTTTG+AGG + chr1_4:57288304-57288323 Msa0172290:intron 35.0%
! TTAGATTTGGTTTACAGCCA+AGG - chr1_4:57288330-57288349 None:intergenic 35.0%
ACTAGAATTCGACATTAAGG+CGG - chr1_4:57288652-57288671 None:intergenic 35.0%
GCACGAGTATTCAAAAAATG+TGG + chr1_4:57288741-57288760 Msa0172290:CDS 35.0%
ATCACAGTCAATAAACCCAA+GGG - chr1_4:57288783-57288802 None:intergenic 35.0%
TATCACAGTCAATAAACCCA+AGG - chr1_4:57288784-57288803 None:intergenic 35.0%
AGTGGCAAACAATGCAAATA+TGG - chr1_4:57288831-57288850 None:intergenic 35.0%
TCACCAGATGTTTATTTGAG+TGG + chr1_4:57288887-57288906 Msa0172290:CDS 35.0%
ATCCAAATTTCTCCCTATGT+AGG + chr1_4:57288985-57289004 Msa0172290:intron 35.0%
AACCTACATAGGGAGAAATT+TGG - chr1_4:57288990-57289009 None:intergenic 35.0%
CAATGAATGAGAACCTACAT+AGG - chr1_4:57289001-57289020 None:intergenic 35.0%
TTCTCATTCATTGCTGAAAC+AGG + chr1_4:57289008-57289027 Msa0172290:intron 35.0%
GCTGATATCAAGTCAATGAT+AGG - chr1_4:57289323-57289342 None:intergenic 35.0%
!! GGAGTAACCTTTTAATTCCA+GGG - chr1_4:57289355-57289374 None:intergenic 35.0%
TGCAGAATCTAGAAATGTCA+AGG + chr1_4:57289477-57289496 Msa0172290:CDS 35.0%
! AGAAATGTCAAGGTACTTCT+CGG + chr1_4:57289487-57289506 Msa0172290:intron 35.0%
!! AAGGTACTTCTCGGAATTTT+AGG + chr1_4:57289496-57289515 Msa0172290:intron 35.0%
AAGCAAGAAAAATCTGCATC+GGG - chr1_4:57289679-57289698 None:intergenic 35.0%
TCAACGTAAACATCACTTAC+TGG - chr1_4:57289762-57289781 None:intergenic 35.0%
AGAGTCTTCTGTGAGTTTAT+TGG + chr1_4:57289805-57289824 Msa0172290:intron 35.0%
GAGTCTTCTGTGAGTTTATT+GGG + chr1_4:57289806-57289825 Msa0172290:intron 35.0%
ATTGTTGGAAATGGTTACAG+TGG - chr1_4:57289899-57289918 None:intergenic 35.0%
TGAGCGTAAATTGTTGGAAA+TGG - chr1_4:57289908-57289927 None:intergenic 35.0%
GTGATTTGAGCGTAAATTGT+TGG - chr1_4:57289914-57289933 None:intergenic 35.0%
TGCATAACATACTTAGTCGT+GGG - chr1_4:57289936-57289955 None:intergenic 35.0%
TTGCATAACATACTTAGTCG+TGG - chr1_4:57289937-57289956 None:intergenic 35.0%
CGACTAAGTATGTTATGCAA+TGG + chr1_4:57289937-57289956 Msa0172290:intron 35.0%
! GAGAGCTTCTAAAAAAGTTG+AGG - chr1_4:57290131-57290150 None:intergenic 35.0%
CTCATGACTATGTTATGCAA+TGG + chr1_4:57290336-57290355 Msa0172290:intron 35.0%
GGAGAAAAAAACAGTAAAGC+TGG - chr1_4:57290393-57290412 None:intergenic 35.0%
TATTTCAAGAGTAGCGAAAC+AGG + chr1_4:57290557-57290576 Msa0172290:CDS 35.0%
CAGGTAGTTTAAACAATGTG+TGG + chr1_4:57290576-57290595 Msa0172290:intron 35.0%
CTTCTAAACCTTGAGATGAT+GGG - chr1_4:57290709-57290728 None:intergenic 35.0%
ACTTCTAAACCTTGAGATGA+TGG - chr1_4:57290710-57290729 None:intergenic 35.0%
TATAATGGTAGTCAAGAGGA+TGG - chr1_4:57290878-57290897 None:intergenic 35.0%
TAAGACAAGCACGAGTATAA+TGG - chr1_4:57290893-57290912 None:intergenic 35.0%
! GATTAACTGACTCCTCTATA+AGG - chr1_4:57290970-57290989 None:intergenic 35.0%
TACTCTTGACAATAAGTTCC+TGG + chr1_4:57291064-57291083 Msa0172290:intron 35.0%
TGTTGCTGCATTTGATTGAA+TGG + chr1_4:57291088-57291107 Msa0172290:intron 35.0%
GTTGCTGCATTTGATTGAAT+GGG + chr1_4:57291089-57291108 Msa0172290:intron 35.0%
TTGCTGCATTTGATTGAATG+GGG + chr1_4:57291090-57291109 Msa0172290:intron 35.0%
! TTGAATGGGGTATCAATTGT+CGG + chr1_4:57291103-57291122 Msa0172290:intron 35.0%
CTCAGAATGTTAGAATCAAC+TGG - chr1_4:57291507-57291526 None:intergenic 35.0%
! TGAGTTGAGTCTAGTATAAG+AGG + chr1_4:57291811-57291830 Msa0172290:exon 35.0%
ATTGTTAGTATTGCAGCAAG+TGG + chr1_4:57291961-57291980 Msa0172290:three_prime_UTR 35.0%
GCATTAAGAATGACAAAGAC+TGG - chr1_4:57292035-57292054 None:intergenic 35.0%
GTTAATGCCAGAGACAATAG+TGG + chr1_4:57285442-57285461 Msa0172290:five_prime_UTR 40.0%
CTGAGATTGGTGAATTTGTC+TGG - chr1_4:57285620-57285639 None:intergenic 40.0%
! GATGTGAAAACCGACTTAGT+TGG - chr1_4:57285766-57285785 None:intergenic 40.0%
TTACAATATGAAACCCCCTG+GGG + chr1_4:57286276-57286295 Msa0172290:intron 40.0%
CAAGTCTGTCTTACAACATC+TGG - chr1_4:57286306-57286325 None:intergenic 40.0%
CAGATGTTGTAAGACAGACT+TGG + chr1_4:57286304-57286323 Msa0172290:intron 40.0%
CAAAAATTGTTAACACCCGG+AGG - chr1_4:57286352-57286371 None:intergenic 40.0%
TGGCAATTGAATGTATGGAC+TGG - chr1_4:57286376-57286395 None:intergenic 40.0%
CCTAAGGACTAACTAATCTG+AGG - chr1_4:57286425-57286444 None:intergenic 40.0%
! CCTCAGATTAGTTAGTCCTT+AGG + chr1_4:57286422-57286441 Msa0172290:intron 40.0%
! AGATTAGTTAGTCCTTAGGC+CGG + chr1_4:57286426-57286445 Msa0172290:intron 40.0%
TATGAATGTTAGGGCCTGTT+TGG + chr1_4:57286482-57286501 Msa0172290:intron 40.0%
CGTTCTGTTCGTATATCAAG+GGG - chr1_4:57286673-57286692 None:intergenic 40.0%
! GGATTTTGTTGGATGAGAAC+TGG + chr1_4:57286805-57286824 Msa0172290:intron 40.0%
GTTTGTGCTGGATGATATTC+AGG + chr1_4:57286827-57286846 Msa0172290:intron 40.0%
ACCAAAAGGACTATTTCCTC+CGG + chr1_4:57286963-57286982 Msa0172290:CDS 40.0%
AAAGTTGCTATCATTGGAGC+TGG + chr1_4:57287015-57287034 Msa0172290:CDS 40.0%
AAGTTGCTATCATTGGAGCT+GGG + chr1_4:57287016-57287035 Msa0172290:CDS 40.0%
GCTAAATGTGCCAAGATATC+TGG + chr1_4:57287238-57287257 Msa0172290:intron 40.0%
TCAATGTTCTCTCATTCAGG+TGG + chr1_4:57287283-57287302 Msa0172290:intron 40.0%
ACGCGGAAATCACATTGAAA+TGG + chr1_4:57287361-57287380 Msa0172290:CDS 40.0%
CGCGGAAATCACATTGAAAT+GGG + chr1_4:57287362-57287381 Msa0172290:CDS 40.0%
ACTGAAGAAGGACATGCATT+TGG - chr1_4:57287459-57287478 None:intergenic 40.0%
! AATTTTTCTTCGCCTTGCTG+GGG + chr1_4:57287568-57287587 Msa0172290:intron 40.0%
CACACCTTTGTAAACAAAGG+GGG + chr1_4:57287634-57287653 Msa0172290:CDS 40.0%
! TTGACCCCCTTTGTTTACAA+AGG - chr1_4:57287641-57287660 None:intergenic 40.0%
GTAAACAAAGGGGGTCAAAT+TGG + chr1_4:57287643-57287662 Msa0172290:CDS 40.0%
! AGAACTAGATTTTCGCTTCC+CGG + chr1_4:57287814-57287833 Msa0172290:intron 40.0%
ATCACGCAATCAGAACAGTA+TGG - chr1_4:57287917-57287936 None:intergenic 40.0%
TACTGTTCTGATTGCGTGAT+TGG + chr1_4:57287917-57287936 Msa0172290:intron 40.0%
!! TGTGCATGTTTTTGTCTCCT+TGG + chr1_4:57287974-57287993 Msa0172290:intron 40.0%
!! GTGCATGTTTTTGTCTCCTT+GGG + chr1_4:57287975-57287994 Msa0172290:intron 40.0%
!! TGCATGTTTTTGTCTCCTTG+GGG + chr1_4:57287976-57287995 Msa0172290:intron 40.0%
ATTGAGGGACATACGGAATT+TGG + chr1_4:57288121-57288140 Msa0172290:CDS 40.0%
CGGAATTTGGATAGTGTAAG+AGG + chr1_4:57288134-57288153 Msa0172290:intron 40.0%
GTCGTCCAAATACAAAGCTA+AGG - chr1_4:57288208-57288227 None:intergenic 40.0%
GCATGTGTGATGTGAATGTT+TGG - chr1_4:57288266-57288285 None:intergenic 40.0%
CCATTTGCTCCTTTGTATGT+GGG - chr1_4:57288290-57288309 None:intergenic 40.0%
TCCATTTGCTCCTTTGTATG+TGG - chr1_4:57288291-57288310 None:intergenic 40.0%
CCATTTGCTCCTTTGTATGT+GGG - chr1_4:57288290-57288309 None:intergenic 40.0%
TCCATTTGCTCCTTTGTATG+TGG - chr1_4:57288291-57288310 None:intergenic 40.0%
CCATTTGCTCCTTTGTATGT+GGG - chr1_4:57288290-57288309 None:intergenic 40.0%
TCCATTTGCTCCTTTGTATG+TGG - chr1_4:57288291-57288310 None:intergenic 40.0%
AGGCGGAATATTGACAAACA+TGG - chr1_4:57288635-57288654 None:intergenic 40.0%
!! TCAGACTGGTTTATGTCCAA+AGG + chr1_4:57288710-57288729 Msa0172290:CDS 40.0%
AAATATGGTGAGCATGCAAC+GGG - chr1_4:57288816-57288835 None:intergenic 40.0%
CAAATATGGTGAGCATGCAA+CGG - chr1_4:57288817-57288836 None:intergenic 40.0%
TTTATTTGAGTGGCCCTATC+CGG + chr1_4:57288897-57288916 Msa0172290:CDS 40.0%
CTCTATCTGTGATGTACTTC+CGG - chr1_4:57288919-57288938 None:intergenic 40.0%
! GGAAGTACATCACAGATAGA+GGG + chr1_4:57288918-57288937 Msa0172290:CDS 40.0%
GAAGTACATCACAGATAGAG+GGG + chr1_4:57288919-57288938 Msa0172290:CDS 40.0%
AAGTACATCACAGATAGAGG+GGG + chr1_4:57288920-57288939 Msa0172290:CDS 40.0%
! AAACAGGTTCCATCTAAGGT+GGG + chr1_4:57289024-57289043 Msa0172290:intron 40.0%
TACAGGACTTTCCTTGTCAA+AGG + chr1_4:57289096-57289115 Msa0172290:CDS 40.0%
! GGCTTCCACAATTTTCTTCT+CGG - chr1_4:57289216-57289235 None:intergenic 40.0%
CTAACCAGCAACATAAGCAT+CGG - chr1_4:57289237-57289256 None:intergenic 40.0%
!! GGGAGTAACCTTTTAATTCC+AGG - chr1_4:57289356-57289375 None:intergenic 40.0%
ACAGTGCAACTCAGATACAA+TGG + chr1_4:57289440-57289459 Msa0172290:CDS 40.0%
TGCAACTCAGATACAATGGT+TGG + chr1_4:57289444-57289463 Msa0172290:CDS 40.0%
GCAACTCAGATACAATGGTT+GGG + chr1_4:57289445-57289464 Msa0172290:CDS 40.0%
CTTTACGAACCCTTACATTC+TGG + chr1_4:57289603-57289622 Msa0172290:intron 40.0%
ATAGAGAAGGTTGTCTAACC+CGG - chr1_4:57289653-57289672 None:intergenic 40.0%
AGCAAGAAAAATCTGCATCG+GGG - chr1_4:57289678-57289697 None:intergenic 40.0%
TCCTGAAGACTATTACATCG+AGG + chr1_4:57289720-57289739 Msa0172290:CDS 40.0%
CCTGAAGACTATTACATCGA+GGG + chr1_4:57289721-57289740 Msa0172290:CDS 40.0%
AAACTCACAGAAGACTCTCT+TGG - chr1_4:57289803-57289822 None:intergenic 40.0%
AATGGATGAAACTGCACCAT+CGG + chr1_4:57289955-57289974 Msa0172290:intron 40.0%
! TTGACTCGTCAGTTCAACAT+AGG + chr1_4:57290359-57290378 Msa0172290:intron 40.0%
TATGTTGGACTTGCAATGAG+AGG - chr1_4:57290424-57290443 None:intergenic 40.0%
CTCAAGGTTTAGAAGTGACT+TGG + chr1_4:57290714-57290733 Msa0172290:CDS 40.0%
GGTCTAAATGGATCTTTACC+AGG - chr1_4:57290782-57290801 None:intergenic 40.0%
! GTCTTTTGGTCAGGTCTAAA+TGG - chr1_4:57290794-57290813 None:intergenic 40.0%
!! TTCTGGCTCTTACACAAAAC+AGG + chr1_4:57290835-57290854 Msa0172290:CDS 40.0%
CGAGTATAATGGTAGTCAAG+AGG - chr1_4:57290882-57290901 None:intergenic 40.0%
!!! GCAGCTGCTGATATTTTTTG+TGG + chr1_4:57290929-57290948 Msa0172290:intron 40.0%
AATCAAATGCAGCAACAACC+AGG - chr1_4:57291085-57291104 None:intergenic 40.0%
CGAGGAAATGCATGAATATG+AGG - chr1_4:57291151-57291170 None:intergenic 40.0%
TCTAAAGATTGCTGTGACAC+TGG - chr1_4:57291571-57291590 None:intergenic 40.0%
TCAGGATTACATAGACAGCA+TGG + chr1_4:57291661-57291680 Msa0172290:intron 40.0%
GATTACATAGACAGCATGGA+AGG + chr1_4:57291665-57291684 Msa0172290:CDS 40.0%
TTCAGCCTATATCTGTGATG+CGG + chr1_4:57291712-57291731 Msa0172290:CDS 40.0%
GTAGATGCCACTATTGTCTC+TGG - chr1_4:57285452-57285471 None:intergenic 45.0%
! TTGTGACTTGTGTGTGTGAG+TGG - chr1_4:57285565-57285584 None:intergenic 45.0%
TGTGTCTTTGCGAAACGTGT+GGG - chr1_4:57285869-57285888 None:intergenic 45.0%
ATGTGTCTTTGCGAAACGTG+TGG - chr1_4:57285870-57285889 None:intergenic 45.0%
AGACACATAGCCACAAGGTT+CGG + chr1_4:57285882-57285901 Msa0172290:CDS 45.0%
GTTTCCGACATGAGTACCAA+CGG + chr1_4:57285929-57285948 Msa0172290:CDS 45.0%
CTAACCGTTGGTACTCATGT+CGG - chr1_4:57285936-57285955 None:intergenic 45.0%
CTGCATAAGCACTTGTGAGA+TGG - chr1_4:57286195-57286214 None:intergenic 45.0%
AAGCTCAAGCCAATCCAACT+AGG + chr1_4:57286220-57286239 Msa0172290:intron 45.0%
CATTATGGGCCTAGTTGGAT+TGG - chr1_4:57286232-57286251 None:intergenic 45.0%
TAGCACATTATGGGCCTAGT+TGG - chr1_4:57286237-57286256 None:intergenic 45.0%
TGTAAGACAGACTTGGGACT+TGG + chr1_4:57286311-57286330 Msa0172290:intron 45.0%
GTAAGACAGACTTGGGACTT+GGG + chr1_4:57286312-57286331 Msa0172290:intron 45.0%
TCGTATATCAAGGGGCTGTT+TGG - chr1_4:57286665-57286684 None:intergenic 45.0%
AGGTTCTACATGGGTCATGT+GGG + chr1_4:57286847-57286866 Msa0172290:intron 45.0%
ACTTTCATGCCAGCACCAAA+AGG + chr1_4:57286949-57286968 Msa0172290:intron 45.0%
!! GGAAATAGTCCTTTTGGTGC+TGG - chr1_4:57286961-57286980 None:intergenic 45.0%
! TCCGGAGGAAATAGTCCTTT+TGG - chr1_4:57286967-57286986 None:intergenic 45.0%
TTCGGTCCTCGATAATGTTC+AGG - chr1_4:57286991-57287010 None:intergenic 45.0%
GTCAACTGCAGTTGAACTCT+TGG + chr1_4:57287050-57287069 Msa0172290:CDS 45.0%
GCAGTTGAACTCTTGGATCA+AGG + chr1_4:57287057-57287076 Msa0172290:CDS 45.0%
ACTCTTGGATCAAGGACATG+AGG + chr1_4:57287065-57287084 Msa0172290:CDS 45.0%
AACAAAGGGGGTCAAATTGG+AGG + chr1_4:57287646-57287665 Msa0172290:CDS 45.0%
! TAGATTTTCGCTTCCCGGTT+GGG + chr1_4:57287819-57287838 Msa0172290:CDS 45.0%
! TCAACAAGAGCTCTGACAAC+TGG - chr1_4:57288089-57288108 None:intergenic 45.0%
AGAGCTCTTGTTGATCCAGA+TGG + chr1_4:57288095-57288114 Msa0172290:CDS 45.0%
TTGATCCAGATGGTGCATTG+AGG + chr1_4:57288105-57288124 Msa0172290:CDS 45.0%
TGATCCAGATGGTGCATTGA+GGG + chr1_4:57288106-57288125 Msa0172290:CDS 45.0%
ATGGTGCATTGAGGGACATA+CGG + chr1_4:57288114-57288133 Msa0172290:CDS 45.0%
TGTGCATGCACATGTGCAAT+GGG - chr1_4:57288242-57288261 None:intergenic 45.0%
ATGTGCATGCACATGTGCAA+TGG - chr1_4:57288243-57288262 None:intergenic 45.0%
ACACATGCACCCACATACAA+AGG + chr1_4:57288278-57288297 Msa0172290:intron 45.0%
CCCACATACAAAGGAGCAAA+TGG + chr1_4:57288287-57288306 Msa0172290:intron 45.0%
!!! AAACGGAACTTTTGAGGCCT+TGG + chr1_4:57288310-57288329 Msa0172290:intron 45.0%
ACACATGCACCCACATACAA+AGG + chr1_4:57288278-57288297 Msa0172290:intron 45.0%
CCCACATACAAAGGAGCAAA+TGG + chr1_4:57288287-57288306 Msa0172290:intron 45.0%
!!! AAACGGAACTTTTGAGGCCT+TGG + chr1_4:57288310-57288329 Msa0172290:intron 45.0%
ACACATGCACCCACATACAA+AGG + chr1_4:57288278-57288297 Msa0172290:intron 45.0%
CCCACATACAAAGGAGCAAA+TGG + chr1_4:57288287-57288306 Msa0172290:intron 45.0%
!!! AAACGGAACTTTTGAGGCCT+TGG + chr1_4:57288310-57288329 Msa0172290:intron 45.0%
!!! TGCAGGTTAGCTTTTCAGAC+TGG + chr1_4:57288696-57288715 Msa0172290:intron 45.0%
!! GACTGGTTTATGTCCAAAGG+TGG + chr1_4:57288713-57288732 Msa0172290:CDS 45.0%
! GTCAATAAACCCAAGGGCAT+AGG - chr1_4:57288777-57288796 None:intergenic 45.0%
ATTGTTTGCCACTAAGACCG+AGG + chr1_4:57288838-57288857 Msa0172290:CDS 45.0%
ACCTTTCAGCATCCGCAAAA+GGG - chr1_4:57288867-57288886 None:intergenic 45.0%
AACCTTTCAGCATCCGCAAA+AGG - chr1_4:57288868-57288887 None:intergenic 45.0%
GGGCCACTCAAATAAACATC+TGG - chr1_4:57288893-57288912 None:intergenic 45.0%
CTGTGATGTACTTCCGGATA+GGG - chr1_4:57288913-57288932 None:intergenic 45.0%
TCTGTGATGTACTTCCGGAT+AGG - chr1_4:57288914-57288933 None:intergenic 45.0%
! CGGAAGTACATCACAGATAG+AGG + chr1_4:57288917-57288936 Msa0172290:CDS 45.0%
GCTGAAACAGGTTCCATCTA+AGG + chr1_4:57289020-57289039 Msa0172290:intron 45.0%
GAAACAGGTTCCATCTAAGG+TGG + chr1_4:57289023-57289042 Msa0172290:intron 45.0%
! AACAGGTTCCATCTAAGGTG+GGG + chr1_4:57289025-57289044 Msa0172290:intron 45.0%
!! GATGGGAGCACTTATGTTAC+AGG + chr1_4:57289079-57289098 Msa0172290:CDS 45.0%
! ATTTTCTTCTCGGTAGCCTG+AGG - chr1_4:57289206-57289225 None:intergenic 45.0%
GGCTACCGAGAAGAAAATTG+TGG + chr1_4:57289208-57289227 Msa0172290:intron 45.0%
TTTAATTCCAGGGACATCGC+AGG - chr1_4:57289345-57289364 None:intergenic 45.0%
GCGATGTCCCTGGAATTAAA+AGG + chr1_4:57289345-57289364 Msa0172290:CDS 45.0%
AAAGGTTACTCCCATCAGAG+TGG + chr1_4:57289363-57289382 Msa0172290:CDS 45.0%
ACGAACCCTTACATTCTGGA+TGG + chr1_4:57289607-57289626 Msa0172290:intron 45.0%
AGGCAACTGAAGAAAGCTAC+CGG + chr1_4:57289631-57289650 Msa0172290:intron 45.0%
GCAAGAAAAATCTGCATCGG+GGG - chr1_4:57289677-57289696 None:intergenic 45.0%
CCCTCGATGTAATAGTCTTC+AGG - chr1_4:57289724-57289743 None:intergenic 45.0%
GACTATTACATCGAGGGACA+AGG + chr1_4:57289727-57289746 Msa0172290:CDS 45.0%
CAAGTTGCTTGATGAACCGA+TGG - chr1_4:57289974-57289993 None:intergenic 45.0%
CTCTTATCAGTGCTCGATCA+TGG - chr1_4:57290167-57290186 None:intergenic 45.0%
! TCATTTGGCAAGGGCATGTA+TGG - chr1_4:57290531-57290550 None:intergenic 45.0%
TCGTTGTTCCCATCATCTCA+AGG + chr1_4:57290698-57290717 Msa0172290:CDS 45.0%
! TTCACTGGTGTCTTTTGGTC+AGG - chr1_4:57290803-57290822 None:intergenic 45.0%
ATGGTAGTCAAGAGGATGGA+GGG - chr1_4:57290874-57290893 None:intergenic 45.0%
AATGGTAGTCAAGAGGATGG+AGG - chr1_4:57290875-57290894 None:intergenic 45.0%
TATCAGCAGCTGCAAACTTG+AGG - chr1_4:57290922-57290941 None:intergenic 45.0%
! AATGGGGTATCAATTGTCGG+TGG + chr1_4:57291106-57291125 Msa0172290:intron 45.0%
GCTCTATCCTCAGTTGAAAG+TGG - chr1_4:57291413-57291432 None:intergenic 45.0%
!! ACCTTTCCTTTTGACTACCG+TGG + chr1_4:57291459-57291478 Msa0172290:intron 45.0%
!! CCTTTCCTTTTGACTACCGT+GGG + chr1_4:57291460-57291479 Msa0172290:intron 45.0%
! ATGGAAGGTGCAACCTTATC+CGG + chr1_4:57291680-57291699 Msa0172290:CDS 45.0%
TCAGCCTATATCTGTGATGC+GGG + chr1_4:57291713-57291732 Msa0172290:CDS 45.0%
GAGCTTCTTGCACAGTCTAA+AGG + chr1_4:57291761-57291780 Msa0172290:CDS 45.0%
GGAAGTGATCACTGTACAAG+CGG + chr1_4:57292104-57292123 Msa0172290:three_prime_UTR 45.0%
CTTGTGTGTGTGAGTGGTAG+TGG - chr1_4:57285559-57285578 None:intergenic 50.0%
GTATCTTGGCTACGTAGGCT+GGG - chr1_4:57285651-57285670 None:intergenic 50.0%
!! GAAGGGTATCTTGGCTACGT+AGG - chr1_4:57285656-57285675 None:intergenic 50.0%
GTAGCAGAGAGTGAAGTTGC+CGG - chr1_4:57285815-57285834 None:intergenic 50.0%
ACTCGTGCTGGAGATTCTGT+TGG + chr1_4:57285833-57285852 Msa0172290:CDS 50.0%
CGCAAAGACACATAGCCACA+AGG + chr1_4:57285877-57285896 Msa0172290:CDS 50.0%
AATATGAAACCCCCTGGGGT+TGG + chr1_4:57286280-57286299 Msa0172290:intron 50.0%
GGTCTCAGGTTCAAATCCTC+CGG + chr1_4:57286333-57286352 Msa0172290:intron 50.0%
GTCTCAGGTTCAAATCCTCC+GGG + chr1_4:57286334-57286353 Msa0172290:intron 50.0%
GGGGGTGGCAATTGAATGTA+TGG - chr1_4:57286381-57286400 None:intergenic 50.0%
ACTAATCTCACCGTCCACTG+GGG - chr1_4:57286401-57286420 None:intergenic 50.0%
GACTAATCTCACCGTCCACT+GGG - chr1_4:57286402-57286421 None:intergenic 50.0%
GAAACTTGGTATCCGGCCTA+AGG - chr1_4:57286441-57286460 None:intergenic 50.0%
!! GGATGAGAACTGGTTTGTGC+TGG + chr1_4:57286815-57286834 Msa0172290:intron 50.0%
CAGGTTCTACATGGGTCATG+TGG + chr1_4:57286846-57286865 Msa0172290:intron 50.0%
CCTCGATAATGTTCAGGCTC+CGG - chr1_4:57286985-57287004 None:intergenic 50.0%
! CTAGATTTTCGCTTCCCGGT+TGG + chr1_4:57287818-57287837 Msa0172290:CDS 50.0%
! AGATTTTCGCTTCCCGGTTG+GGG + chr1_4:57287820-57287839 Msa0172290:CDS 50.0%
GCAATGCAATGACATCCCCA+AGG - chr1_4:57287994-57288013 None:intergenic 50.0%
TGGACTCAGTGCAAGAGCTA+CGG - chr1_4:57288069-57288088 None:intergenic 50.0%
ATGTCCCTCAATGCACCATC+TGG - chr1_4:57288113-57288132 None:intergenic 50.0%
ATCCAGTTGCCTATGCCCTT+GGG + chr1_4:57288765-57288784 Msa0172290:CDS 50.0%
! TCCCTTTTGCGGATGCTGAA+AGG + chr1_4:57288863-57288882 Msa0172290:CDS 50.0%
TAGAGGGGGCAGGTATAGTT+CGG + chr1_4:57288934-57288953 Msa0172290:intron 50.0%
GAAGCCGATGCTTATGTTGC+TGG + chr1_4:57289230-57289249 Msa0172290:CDS 50.0%
!! GGTTAGTAGTTTGCTTGCCC+TGG + chr1_4:57289251-57289270 Msa0172290:intron 50.0%
GTTACTCCCATCAGAGTGGA+GGG + chr1_4:57289367-57289386 Msa0172290:CDS 50.0%
! CCTTTTCCCTCCACTCTGAT+GGG - chr1_4:57289376-57289395 None:intergenic 50.0%
! TCCTTTTCCCTCCACTCTGA+TGG - chr1_4:57289377-57289396 None:intergenic 50.0%
ACCCTTACATTCTGGATGGC+AGG + chr1_4:57289611-57289630 Msa0172290:intron 50.0%
GCCTGCCATCCAGAATGTAA+GGG - chr1_4:57289615-57289634 None:intergenic 50.0%
TGCCTGCCATCCAGAATGTA+AGG - chr1_4:57289616-57289635 None:intergenic 50.0%
GGCAACTGAAGAAAGCTACC+GGG + chr1_4:57289632-57289651 Msa0172290:intron 50.0%
ATCAGATGTGTTCTGACGCC+AGG + chr1_4:57290501-57290520 Msa0172290:intron 50.0%
! AAGGGCATGTATGGATCTCC+TGG - chr1_4:57290522-57290541 None:intergenic 50.0%
GATCTTTACCAGGTCCCTCA+CGG - chr1_4:57290772-57290791 None:intergenic 50.0%
CCCACGGTAGTCAAAAGGAA+AGG - chr1_4:57291463-57291482 None:intergenic 50.0%
AAAGTTGGAAGCTCTGCCCA+CGG - chr1_4:57291479-57291498 None:intergenic 50.0%
TGAAGTTTGCCTGCCGGATA+AGG - chr1_4:57291696-57291715 None:intergenic 50.0%
ATAGGCTGAAGTTTGCCTGC+CGG - chr1_4:57291702-57291721 None:intergenic 50.0%
CAGCCTATATCTGTGATGCG+GGG + chr1_4:57291714-57291733 Msa0172290:CDS 50.0%
AGCCTATATCTGTGATGCGG+GGG + chr1_4:57291715-57291734 Msa0172290:CDS 50.0%
TTCCCCCGCATCACAGATAT+AGG - chr1_4:57291720-57291739 None:intergenic 50.0%
! GGGAAGAATTGGTGGCATTG+CGG + chr1_4:57291735-57291754 Msa0172290:CDS 50.0%
! AGAATTGGTGGCATTGCGGA+AGG + chr1_4:57291739-57291758 Msa0172290:CDS 50.0%
ATGTCACACGCCCAAAGAAC+AGG - chr1_4:57291905-57291924 None:intergenic 50.0%
GTACAGTGATCACTTCCTCC+AGG - chr1_4:57292101-57292120 None:intergenic 50.0%
CTGGGAGGAGATGCTGAGAT+TGG - chr1_4:57285633-57285652 None:intergenic 55.0%
GGTATCTTGGCTACGTAGGC+TGG - chr1_4:57285652-57285671 None:intergenic 55.0%
TCACTCTCTGCTACTCGTGC+TGG + chr1_4:57285821-57285840 Msa0172290:CDS 55.0%
AGCAACGAAGCCGAACCTTG+TGG - chr1_4:57285895-57285914 None:intergenic 55.0%
GGTTCGGCTTCGTTGCTCTT+TGG + chr1_4:57285898-57285917 Msa0172290:CDS 55.0%
ACAACATCTGGCCAACCCCA+GGG - chr1_4:57286294-57286313 None:intergenic 55.0%
TACAACATCTGGCCAACCCC+AGG - chr1_4:57286295-57286314 None:intergenic 55.0%
AGACTTGGGACTTGGGTCTC+AGG + chr1_4:57286319-57286338 Msa0172290:intron 55.0%
ATTCAATTGCCACCCCCCAG+TGG + chr1_4:57286384-57286403 Msa0172290:intron 55.0%
TAATCTCACCGTCCACTGGG+GGG - chr1_4:57286399-57286418 None:intergenic 55.0%
CTAATCTCACCGTCCACTGG+GGG - chr1_4:57286400-57286419 None:intergenic 55.0%
GGACTAATCTCACCGTCCAC+TGG - chr1_4:57286403-57286422 None:intergenic 55.0%
CGATAATGTTCAGGCTCCGG+AGG - chr1_4:57286982-57287001 None:intergenic 55.0%
CCGGAGCCTGAACATTATCG+AGG + chr1_4:57286982-57287001 Msa0172290:CDS 55.0%
ATCATTGGAGCTGGGCTTGC+TGG + chr1_4:57287024-57287043 Msa0172290:CDS 55.0%
GATCCAGTTGCCTATGCCCT+TGG + chr1_4:57288764-57288783 Msa0172290:CDS 55.0%
! AACCCAAGGGCATAGGCAAC+TGG - chr1_4:57288770-57288789 None:intergenic 55.0%
AAGGGAAGCCTCGGTCTTAG+TGG - chr1_4:57288849-57288868 None:intergenic 55.0%
! AGACCGAGGCTTCCCTTTTG+CGG + chr1_4:57288852-57288871 Msa0172290:CDS 55.0%
CATCCGCAAAAGGGAAGCCT+CGG - chr1_4:57288858-57288877 None:intergenic 55.0%
ACATCACAGATAGAGGGGGC+AGG + chr1_4:57288924-57288943 Msa0172290:CDS 55.0%
CTCTGCATCCCCACCTTAGA+TGG - chr1_4:57289036-57289055 None:intergenic 55.0%
ATATCAGCCTGCGATGTCCC+TGG + chr1_4:57289335-57289354 Msa0172290:intron 55.0%
GGTTACTCCCATCAGAGTGG+AGG + chr1_4:57289366-57289385 Msa0172290:CDS 55.0%
CCCATCAGAGTGGAGGGAAA+AGG + chr1_4:57289373-57289392 Msa0172290:CDS 55.0%
CGAACTCGTTGGAGTTCCTG+TGG + chr1_4:57289415-57289434 Msa0172290:CDS 55.0%
CTGAGTTGCACTGTGACCAC+AGG - chr1_4:57289434-57289453 None:intergenic 55.0%
! CTGCATCGGGGGTATAGAGA+AGG - chr1_4:57289666-57289685 None:intergenic 55.0%
GGCCAATCTCTGTACCGTGA+GGG + chr1_4:57290755-57290774 Msa0172290:CDS 55.0%
GTCCCTCACGGTACAGAGAT+TGG - chr1_4:57290760-57290779 None:intergenic 55.0%
GCAGCTGCAAACTTGAGGTC+TGG - chr1_4:57290917-57290936 None:intergenic 55.0%
CTCTGCCCACGGTAGTCAAA+AGG - chr1_4:57291468-57291487 None:intergenic 55.0%
AAGGTGCAACCTTATCCGGC+AGG + chr1_4:57291684-57291703 Msa0172290:CDS 55.0%
CTGTGATGCGGGGGAAGAAT+TGG + chr1_4:57291724-57291743 Msa0172290:CDS 55.0%
TGATGCGGGGGAAGAATTGG+TGG + chr1_4:57291727-57291746 Msa0172290:CDS 55.0%
TCTTGGCTACGTAGGCTGGG+AGG - chr1_4:57285648-57285667 None:intergenic 60.0%
AACATCTGGCCAACCCCAGG+GGG - chr1_4:57286292-57286311 None:intergenic 60.0%
CAACATCTGGCCAACCCCAG+GGG - chr1_4:57286293-57286312 None:intergenic 60.0%
AATTGCCACCCCCCAGTGGA+CGG + chr1_4:57286388-57286407 Msa0172290:intron 60.0%
TTCTTCGCCTTGCTGGGGCT+AGG + chr1_4:57287573-57287592 Msa0172290:intron 60.0%
! CGTGTAATGGAGCCCCAACC+GGG - chr1_4:57287835-57287854 None:intergenic 60.0%
! CCGTGTAATGGAGCCCCAAC+CGG - chr1_4:57287836-57287855 None:intergenic 60.0%
CCGGTTGGGGCTCCATTACA+CGG + chr1_4:57287833-57287852 Msa0172290:CDS 60.0%
CGGTTGGGGCTCCATTACAC+GGG + chr1_4:57287834-57287853 Msa0172290:CDS 60.0%
ACTCGTGCGTGTGCCACCTT+TGG - chr1_4:57288729-57288748 None:intergenic 60.0%
CGGCCAATCTCTGTACCGTG+AGG + chr1_4:57290754-57290773 Msa0172290:CDS 60.0%
TCTCTGTACCGTGAGGGACC+TGG + chr1_4:57290761-57290780 Msa0172290:CDS 60.0%
TTCGCCTTGCTGGGGCTAGG+TGG + chr1_4:57287576-57287595 Msa0172290:intron 65.0%
TCGCCTTGCTGGGGCTAGGT+GGG + chr1_4:57287577-57287596 Msa0172290:intron 65.0%
TTGCTGGGGCTAGGTGGGTG+CGG + chr1_4:57287582-57287601 Msa0172290:intron 65.0%
TCTCACCGTCCACTGGGGGG+TGG - chr1_4:57286396-57286415 None:intergenic 70.0%
GCACCCACCTAGCCCCAGCA+AGG - chr1_4:57287583-57287602 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 57285412 57292154 57285412 ID=Msa0172290;Name=Msa0172290
chr1_4 mRNA 57285412 57292154 57285412 ID=Msa0172290-mRNA-1;Parent=Msa0172290;Name=Msa0172290-mRNA-1;_AED=0.08;_eAED=0.08;_QI=376|1|1|1|1|1|14|325|579
chr1_4 exon 57285412 57285950 57285412 ID=Msa0172290-mRNA-1:exon:17508;Parent=Msa0172290-mRNA-1
chr1_4 exon 57286962 57287086 57286962 ID=Msa0172290-mRNA-1:exon:17509;Parent=Msa0172290-mRNA-1
chr1_4 exon 57287302 57287436 57287302 ID=Msa0172290-mRNA-1:exon:17510;Parent=Msa0172290-mRNA-1
chr1_4 exon 57287595 57287667 57287595 ID=Msa0172290-mRNA-1:exon:17511;Parent=Msa0172290-mRNA-1
chr1_4 exon 57287816 57287889 57287816 ID=Msa0172290-mRNA-1:exon:17512;Parent=Msa0172290-mRNA-1
chr1_4 exon 57288044 57288148 57288044 ID=Msa0172290-mRNA-1:exon:17513;Parent=Msa0172290-mRNA-1
chr1_4 exon 57288701 57288945 57288701 ID=Msa0172290-mRNA-1:exon:17514;Parent=Msa0172290-mRNA-1
chr1_4 exon 57289030 57289117 57289030 ID=Msa0172290-mRNA-1:exon:17515;Parent=Msa0172290-mRNA-1
chr1_4 exon 57289209 57289251 57289209 ID=Msa0172290-mRNA-1:exon:17516;Parent=Msa0172290-mRNA-1
chr1_4 exon 57289342 57289498 57289342 ID=Msa0172290-mRNA-1:exon:17517;Parent=Msa0172290-mRNA-1
chr1_4 exon 57289633 57289761 57289633 ID=Msa0172290-mRNA-1:exon:17518;Parent=Msa0172290-mRNA-1
chr1_4 exon 57290506 57290578 57290506 ID=Msa0172290-mRNA-1:exon:17519;Parent=Msa0172290-mRNA-1
chr1_4 exon 57290692 57290856 57290692 ID=Msa0172290-mRNA-1:exon:17520;Parent=Msa0172290-mRNA-1
chr1_4 exon 57291665 57292154 57291665 ID=Msa0172290-mRNA-1:exon:17521;Parent=Msa0172290-mRNA-1
chr1_4 five_prime_UTR 57285412 57285787 57285412 ID=Msa0172290-mRNA-1:five_prime_utr;Parent=Msa0172290-mRNA-1
chr1_4 CDS 57285788 57285950 57285788 ID=Msa0172290-mRNA-1:cds;Parent=Msa0172290-mRNA-1
chr1_4 CDS 57286962 57287086 57286962 ID=Msa0172290-mRNA-1:cds;Parent=Msa0172290-mRNA-1
chr1_4 CDS 57287302 57287436 57287302 ID=Msa0172290-mRNA-1:cds;Parent=Msa0172290-mRNA-1
chr1_4 CDS 57287595 57287667 57287595 ID=Msa0172290-mRNA-1:cds;Parent=Msa0172290-mRNA-1
chr1_4 CDS 57287816 57287889 57287816 ID=Msa0172290-mRNA-1:cds;Parent=Msa0172290-mRNA-1
chr1_4 CDS 57288044 57288148 57288044 ID=Msa0172290-mRNA-1:cds;Parent=Msa0172290-mRNA-1
chr1_4 CDS 57288701 57288945 57288701 ID=Msa0172290-mRNA-1:cds;Parent=Msa0172290-mRNA-1
chr1_4 CDS 57289030 57289117 57289030 ID=Msa0172290-mRNA-1:cds;Parent=Msa0172290-mRNA-1
chr1_4 CDS 57289209 57289251 57289209 ID=Msa0172290-mRNA-1:cds;Parent=Msa0172290-mRNA-1
chr1_4 CDS 57289342 57289498 57289342 ID=Msa0172290-mRNA-1:cds;Parent=Msa0172290-mRNA-1
chr1_4 CDS 57289633 57289761 57289633 ID=Msa0172290-mRNA-1:cds;Parent=Msa0172290-mRNA-1
chr1_4 CDS 57290506 57290578 57290506 ID=Msa0172290-mRNA-1:cds;Parent=Msa0172290-mRNA-1
chr1_4 CDS 57290692 57290856 57290692 ID=Msa0172290-mRNA-1:cds;Parent=Msa0172290-mRNA-1
chr1_4 CDS 57291665 57291829 57291665 ID=Msa0172290-mRNA-1:cds;Parent=Msa0172290-mRNA-1
chr1_4 three_prime_UTR 57291830 57292154 57291830 ID=Msa0172290-mRNA-1:three_prime_utr;Parent=Msa0172290-mRNA-1
Gene Sequence

>Msa0172290

ATGATGACTTCTTTAATTCATTGTCCGGCAACTTCACTCTCTGCTACTCGTGCTGGAGATTCTGTTGGTTTCTTTGTTCCCACACGTTTCGCAAAGACACATAGCCACAAGGTTCGGCTTCGTTGCTCTTTGGATTCTAATGTTTCCGACATGAGTACCAACGCACCAAAAGGACTATTTCCTCCGGAGCCTGAACATTATCGAGGACCGAAGCTTAAAGTTGCTATCATTGGAGCTGGGCTTGCTGGCATGTCAACTGCAGTTGAACTCTTGGATCAAGGACATGAGGTGGATATATACGAGTCAAGATCTTTTATTGGTGGCAAAGTTGGTTCTTTTGTTGATAAACGCGGAAATCACATTGAAATGGGATTGCATGTTTTCTTTGGTTGCTACAACAATCTTTTCCGACTATTGAAAAAGGTGGGTGCGGATAACAATCTACTTGTGAAGGATCACACTCACACCTTTGTAAACAAAGGGGGTCAAATTGGAGAACTAGATTTTCGCTTCCCGGTTGGGGCTCCATTACACGGGATAAATGCATTTTTAACCACAAATCAGCTTAAGACTTATGATAAGGCTAGAAATGCCGTAGCTCTTGCACTGAGTCCAGTTGTCAGAGCTCTTGTTGATCCAGATGGTGCATTGAGGGACATACGGAATTTGGATAGTGTTAGCTTTTCAGACTGGTTTATGTCCAAAGGTGGCACACGCACGAGTATTCAAAAAATGTGGGATCCAGTTGCCTATGCCCTTGGGTTTATTGACTGTGATAATATCAGTGCCCGTTGCATGCTCACCATATTTGCATTGTTTGCCACTAAGACCGAGGCTTCCCTTTTGCGGATGCTGAAAGGTTCACCAGATGTTTATTTGAGTGGCCCTATCCGGAAGTACATCACAGATAGAGGGGGCAGGTTCCATCTAAGGTGGGGATGCAGAGAAGTACTTTATGATAAATCTGCTGATGGGAGCACTTATGTTACAGGACTTTCCTTGTCAAAGGCTACCGAGAAGAAAATTGTGGAAGCCGATGCTTATGTTGCTGCCTGCGATGTCCCTGGAATTAAAAGGTTACTCCCATCAGAGTGGAGGGAAAAGGAGTTTTTCAATAACATATACGAACTCGTTGGAGTTCCTGTGGTCACAGTGCAACTCAGATACAATGGTTGGGTAACTGAATTGCAGAATCTAGAAATGTCAAGGCAACTGAAGAAAGCTACCGGGTTAGACAACCTTCTCTATACCCCCGATGCAGATTTTTCTTGCTTTGCAGATCTTGCACTTGCATCTCCTGAAGACTATTACATCGAGGGACAAGGATCATTACTCCAATGTGTTCTGACGCCAGGAGATCCATACATGCCCTTGCCAAATGAAGAAATTATTTCAAGAGTAGCGAAACAGGTTATATCGTTGTTCCCATCATCTCAAGGTTTAGAAGTGACTTGGTCATCTGTTGTTAAAATCGGCCAATCTCTGTACCGTGAGGGACCTGGTAAAGATCCATTTAGACCTGACCAAAAGACACCAGTGAAAAATTTCTTTCTTTCTGGCTCTTACACAAAACAGGATTACATAGACAGCATGGAAGGTGCAACCTTATCCGGCAGGCAAACTTCAGCCTATATCTGTGATGCGGGGGAAGAATTGGTGGCATTGCGGAAGGAGCTTCTTGCACAGTCTAAAGGCGACATTAAATTTACAAATACTAAAGATGAGTTGAGTCTAGTATAA
Protein sequence

>Msa0172290

MMTSLIHCPATSLSATRAGDSVGFFVPTRFAKTHSHKVRLRCSLDSNVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRSFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLLKKVGADNNLLVKDHTHTFVNKGGQIGELDFRFPVGAPLHGINAFLTTNQLKTYDKARNAVALALSPVVRALVDPDGALRDIRNLDSVSFSDWFMSKGGTRTSIQKMWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDRGGRFHLRWGCREVLYDKSADGSTYVTGLSLSKATEKKIVEADAYVAACDVPGIKRLLPSEWREKEFFNNIYELVGVPVVTVQLRYNGWVTELQNLEMSRQLKKATGLDNLLYTPDADFSCFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEEIISRVAKQVISLFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLSGSYTKQDYIDSMEGATLSGRQTSAYICDAGEELVALRKELLAQSKGDIKFTNTKDELSLV*