AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1414000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1414000 MtrunA17_Chr1g0203821 96.838 253 6 1 13 263 128 380 1.34e-177 493
Msa1414000 MtrunA17_Chr4g0024091 31.915 141 90 4 66 202 215 353 7.30e-17 79.3
Msa1414000 MtrunA17_Chr8g0365301 94.286 35 2 0 199 233 1 35 4.45e-16 70.9
Msa1414000 MtrunA17_Chr4g0047511 91.429 35 3 0 199 233 1 35 1.71e-15 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1414000 AT5G52030.1 69.167 240 65 4 24 254 9 248 1.32e-106 309
Msa1414000 AT5G52030.2 68.127 251 69 5 15 254 142 392 2.37e-106 314
Msa1414000 AT1G05270.1 34.028 144 83 5 66 202 182 320 1.49e-16 79.0
Msa1414000 AT2G32340.1 32.031 128 81 4 79 202 182 307 5.82e-13 68.2

Find 97 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATCTCTCAGACCCTTAA+AGG 0.146320 tig0024078:+74960 Msa1414000:five_prime_UTR
AAATGGATTGGTTGTGAAAA+TGG 0.206345 tig0024078:-74926 None:intergenic
AGGTTTGACTGAAACCTTTA+AGG 0.214521 tig0024078:-74974 None:intergenic
CGGTGATTGGCATTGTCTTA+TGG 0.221376 tig0024078:+77571 Msa1414000:CDS
AGGCTGTGAATAACTGTAAA+AGG 0.224403 tig0024078:+77388 Msa1414000:CDS
ACCATTTATGAATTCATATA+AGG 0.233556 tig0024078:-77595 None:intergenic
TCAAATATTGACCGCCCTTT+TGG 0.242909 tig0024078:+76002 Msa1414000:CDS
GGTTTGGTCCTGTTCCTTCT+TGG 0.243513 tig0024078:+75121 Msa1414000:five_prime_UTR
GATAAATGGTGGAACATATA+AGG 0.256164 tig0024078:+77639 Msa1414000:three_prime_UTR
AGTTGGCGCACAACTAGTTT+TGG 0.268585 tig0024078:+76146 Msa1414000:CDS
GGTGATTGGCATTGTCTTAT+GGG 0.292214 tig0024078:+77572 Msa1414000:CDS
TTGTTGAACCTGAGTATATT+TGG 0.298094 tig0024078:+75154 Msa1414000:five_prime_UTR
GCCTTATATGAATTCATAAA+TGG 0.312892 tig0024078:+77594 Msa1414000:CDS
CCTGAGTATATTTGGTTGAT+TGG 0.323014 tig0024078:+75162 Msa1414000:five_prime_UTR
TTACCCTGAGTTGCTTGATT+TGG 0.331889 tig0024078:+75062 Msa1414000:five_prime_UTR
CATGTATAAGAGGCGGCAAT+AGG 0.338425 tig0024078:-77211 None:intergenic
TGACAATGGTAGCTTGGTTT+TGG 0.339365 tig0024078:+75086 Msa1414000:five_prime_UTR
AGCTCAACAACCACATTATC+TGG 0.358672 tig0024078:-75246 None:intergenic
ATAAATGGTGGAACATATAA+GGG 0.380108 tig0024078:+77640 Msa1414000:three_prime_UTR
TCAAATGATGGGGCTTCTAA+TGG 0.385391 tig0024078:+77510 Msa1414000:CDS
ATCAGCTTGACAAACAATTA+AGG 0.385684 tig0024078:+75659 Msa1414000:CDS
GAGCATGGAAGGCTTTGAAT+TGG 0.390401 tig0024078:+76383 Msa1414000:CDS
TTGAGATTTCGAGACCTTGC+TGG 0.392448 tig0024078:+77480 Msa1414000:CDS
GGTTTGACTGAAACCTTTAA+GGG 0.395303 tig0024078:-74973 None:intergenic
GTACATACTGTGATTTCAAT+TGG 0.412770 tig0024078:-76177 None:intergenic
GCAGATTTCATTTCCAGAGC+TGG 0.416909 tig0024078:+75616 Msa1414000:intron
TATGCACTGTTAGCTGATAC+AGG 0.417737 tig0024078:+77453 Msa1414000:CDS
AATGGATTGGTTGTGAAAAT+GGG 0.423259 tig0024078:-74925 None:intergenic
TTGGTCCTGTTCCTTCTTGG+AGG 0.424339 tig0024078:+75124 Msa1414000:five_prime_UTR
TTTGGCATTGAGATTACTCC+TGG 0.424534 tig0024078:+75956 Msa1414000:CDS
CACCTTACTCATTCATTCCA+TGG 0.430997 tig0024078:+74876 Msa1414000:five_prime_UTR
AAAAGGGTGGTAGGTGTGAT+TGG 0.444853 tig0024078:+77405 Msa1414000:CDS
CAGATTTCATTTCCAGAGCT+GGG 0.445745 tig0024078:+75617 Msa1414000:intron
TTAGTGAGGGACACGGTGAT+TGG 0.458487 tig0024078:+77558 Msa1414000:CDS
ATCAGGTGGTCAAACTGCTT+TGG 0.458604 tig0024078:+75938 Msa1414000:intron
TTGGTTCAGAAGAAGAGGTT+TGG 0.465843 tig0024078:+75105 Msa1414000:five_prime_UTR
AAAGATATTGAAGTGAAAAG+TGG 0.471727 tig0024078:-74836 None:intergenic
TGAATTACCTCATCTCCAAA+AGG 0.477616 tig0024078:-76017 None:intergenic
AGCATACATGATCCCAGCTC+TGG 0.484447 tig0024078:-75629 None:intergenic
AAGATATTGAAGTGAAAAGT+GGG 0.485860 tig0024078:-74835 None:intergenic
CTAGTCAGTGAAAGTGATAC+AGG 0.487601 tig0024078:+77890 Msa1414000:three_prime_UTR
TAGTTGAAGTCAGGTGGTGG+AGG 0.491014 tig0024078:-74994 None:intergenic
TCATTCCTCCAAGAAGGAAC+AGG 0.492896 tig0024078:-75129 None:intergenic
TCTAGCTTGTAGTTGAAGTC+AGG 0.495859 tig0024078:-75003 None:intergenic
GTGGTAGGTGTGATTGGAAA+AGG 0.496641 tig0024078:+77411 Msa1414000:CDS
TCGAGAGATTAATCAATGGC+TGG 0.500896 tig0024078:-77932 None:intergenic
CGAAAAGTGTCAGAGGAAGT+TGG 0.501232 tig0024078:+76129 Msa1414000:CDS
TTGTTCTGCAGTATCTTGCA+TGG 0.505968 tig0024078:+77349 Msa1414000:intron
ATGATGGGGCTTCTAATGGC+TGG 0.510475 tig0024078:+77514 Msa1414000:CDS
ACAAATTCATTCCTCCAAGA+AGG 0.510523 tig0024078:-75135 None:intergenic
GTATCTCGTTCATGTATAAG+AGG 0.521701 tig0024078:-77221 None:intergenic
TTTGGCTGACAATGGTAGCT+TGG 0.521900 tig0024078:+75080 Msa1414000:five_prime_UTR
ATGTATAAGAGGCGGCAATA+GGG 0.521908 tig0024078:-77210 None:intergenic
ATGAATGAGTAAGGTGATGA+TGG 0.522283 tig0024078:-74869 None:intergenic
TCAGCCAAATCAAGCAACTC+AGG 0.528460 tig0024078:-75066 None:intergenic
TGAGATTTCGAGACCTTGCT+GGG 0.531713 tig0024078:+77481 Msa1414000:CDS
GAATTACCTCATCTCCAAAA+GGG 0.540567 tig0024078:-76016 None:intergenic
ATCCATGGAATGAATGAGTA+AGG 0.553853 tig0024078:-74878 None:intergenic
GTAGCTTCAGAGAGCATGGA+AGG 0.554057 tig0024078:+76372 Msa1414000:intron
GGCTGTGAATAACTGTAAAA+GGG 0.564509 tig0024078:+77389 Msa1414000:CDS
ATTGGAAAAGGCCACATGAA+TGG 0.567386 tig0024078:+77423 Msa1414000:CDS
CAGAAAGCAAGTTCAGATGA+TGG 0.573617 tig0024078:+77146 Msa1414000:intron
TTGTTGAGCTATGTAGAAGC+AGG 0.573968 tig0024078:+75259 Msa1414000:CDS
CATTTCTACAAATAAGCTTG+AGG 0.575953 tig0024078:+76462 Msa1414000:CDS
TTCTAAAGAGTCAGCTATGG+AGG 0.576746 tig0024078:+75197 Msa1414000:five_prime_UTR
ATGGTCTCTGAAGCGGAGCA+AGG 0.578967 tig0024078:+77368 Msa1414000:CDS
AGCTTGTAGTTGAAGTCAGG+TGG 0.580467 tig0024078:-75000 None:intergenic
TGTTTCTAAAGAGTCAGCTA+TGG 0.581325 tig0024078:+75194 Msa1414000:five_prime_UTR
TTATATGAATTCATAAATGG+TGG 0.584002 tig0024078:+77597 Msa1414000:CDS
TGAGTAAGGTGATGATGGAA+TGG 0.585350 tig0024078:-74864 None:intergenic
ATCTTGCATGGTCTCTGAAG+CGG 0.593986 tig0024078:+77361 Msa1414000:CDS
CCCTCACTAAACTCTTGACT+AGG 0.596428 tig0024078:-77545 None:intergenic
GCTTACCGAGGTTTATGCTA+CGG 0.602521 tig0024078:-75729 None:intergenic
CCAATCAACCAAATATACTC+AGG 0.602610 tig0024078:-75162 None:intergenic
ATAAGAGGCGGCAATAGGGA+TGG 0.604140 tig0024078:-77206 None:intergenic
CGCTGCTCGAAAAGTGTCAG+AGG 0.606032 tig0024078:+76122 Msa1414000:CDS
TTGTAGTTGAAGTCAGGTGG+TGG 0.615582 tig0024078:-74997 None:intergenic
AATAACTGTAAAAGGGTGGT+AGG 0.617141 tig0024078:+77396 Msa1414000:CDS
GTATCACTTTCACTGACTAG+AGG 0.626809 tig0024078:-77887 None:intergenic
ATTGGTTGTGAAAATGGGGA+AGG 0.628812 tig0024078:-74920 None:intergenic
AGCTGTGAAGCCAGATAATG+TGG 0.641571 tig0024078:+75236 Msa1414000:exon
TTGCTTGATTTGGCTGACAA+TGG 0.644980 tig0024078:+75072 Msa1414000:five_prime_UTR
CTGATGAAGATGTTATTCCA+CGG 0.647888 tig0024078:-76438 None:intergenic
TTATTGACGATAGTTATCCG+TGG 0.648146 tig0024078:+76421 Msa1414000:CDS
ATGGATTGGTTGTGAAAATG+GGG 0.648347 tig0024078:-74924 None:intergenic
TAAATGGTGGAACATATAAG+GGG 0.654317 tig0024078:+77641 Msa1414000:three_prime_UTR
ACCTAGTCAAGAGTTTAGTG+AGG 0.655508 tig0024078:+77544 Msa1414000:CDS
CAAGAGTTTAGTGAGGGACA+CGG 0.657364 tig0024078:+77551 Msa1414000:CDS
CCTAGTCAAGAGTTTAGTGA+GGG 0.661710 tig0024078:+77545 Msa1414000:CDS
ATGCACTGTTAGCTGATACA+GGG 0.664898 tig0024078:+77454 Msa1414000:CDS
CAGCCAAATCAAGCAACTCA+GGG 0.672096 tig0024078:-75065 None:intergenic
CATATATTACACCATTCATG+TGG 0.675235 tig0024078:-77434 None:intergenic
TGTGAATAACTGTAAAAGGG+TGG 0.676596 tig0024078:+77392 Msa1414000:CDS
TCTCGTTCATGTATAAGAGG+CGG 0.680308 tig0024078:-77218 None:intergenic
ATATTGAAGTGAAAAGTGGG+AGG 0.694223 tig0024078:-74832 None:intergenic
TTACCTCATCTCCAAAAGGG+CGG 0.697162 tig0024078:-76013 None:intergenic
ATTGGCCGTAGCATAAACCT+CGG 0.708741 tig0024078:+75724 Msa1414000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTGTATTATTGCATATTT+CGG + tig0024078:75498-75517 Msa1414000:intron 15.0%
!! TTATCTTGATTTAGATTAAA+TGG - tig0024078:75823-75842 None:intergenic 15.0%
!! ATTTAATCTAAATCAAGATA+AGG + tig0024078:75822-75841 Msa1414000:intron 15.0%
!! TTTAATCTAAATCAAGATAA+GGG + tig0024078:75823-75842 Msa1414000:intron 15.0%
!!! ACAAAATATCATTTTAAAAG+GGG - tig0024078:76565-76584 None:intergenic 15.0%
!!! GACAAAATATCATTTTAAAA+GGG - tig0024078:76566-76585 None:intergenic 15.0%
!!! TTTTTTTTTTTTGAACAAAG+TGG + tig0024078:76679-76698 Msa1414000:intron 15.0%
!! AAAAATACTATTGTTTACTT+GGG - tig0024078:77326-77345 None:intergenic 15.0%
!! AAAAAATACTATTGTTTACT+TGG - tig0024078:77327-77346 None:intergenic 15.0%
!! TGACAAAAATGAAAAATATA+AGG - tig0024078:77667-77686 None:intergenic 15.0%
!!! TTTTACTACATTTGTATATA+TGG - tig0024078:77845-77864 None:intergenic 15.0%
!! ATAAAATTAGGAGCTATATA+TGG - tig0024078:75457-75476 None:intergenic 20.0%
!! ATTTGTCAATATGCATTATA+CGG + tig0024078:75529-75548 Msa1414000:intron 20.0%
!!! GGACAAAATATCATTTTAAA+AGG - tig0024078:76567-76586 None:intergenic 20.0%
!! ACCATTTATGAATTCATATA+AGG - tig0024078:77598-77617 None:intergenic 20.0%
!! TTATATGAATTCATAAATGG+TGG + tig0024078:77597-77616 Msa1414000:CDS 20.0%
!!! TTTCTTTTTGACTAGATAAA+TGG + tig0024078:77625-77644 Msa1414000:exon 20.0%
! AAGATATTGAAGTGAAAAGT+GGG - tig0024078:74838-74857 None:intergenic 25.0%
! AAAGATATTGAAGTGAAAAG+TGG - tig0024078:74839-74858 None:intergenic 25.0%
! AAGAAAATCTCAACATTAAC+TGG - tig0024078:75337-75356 None:intergenic 25.0%
!! ATGTTGAGATTTTCTTATTC+AGG + tig0024078:75341-75360 Msa1414000:intron 25.0%
! TTCAGTCGGAAAATAAAATT+AGG - tig0024078:75469-75488 None:intergenic 25.0%
!!! ACATATCTATCTTTTTTCTC+AGG + tig0024078:75765-75784 Msa1414000:intron 25.0%
!!! CATATCTATCTTTTTTCTCA+GGG + tig0024078:75766-75785 Msa1414000:intron 25.0%
!!! ATATCTATCTTTTTTCTCAG+GGG + tig0024078:75767-75786 Msa1414000:intron 25.0%
!!! TAATGTGTCTTTAAGATACT+AGG - tig0024078:75796-75815 None:intergenic 25.0%
!!! TTTATTTTGTACCCATGAAT+TGG + tig0024078:75855-75874 Msa1414000:intron 25.0%
!! TGTTTTATGATCGAAATATC+AGG + tig0024078:75921-75940 Msa1414000:intron 25.0%
! TATTCCATAGTGTTCTTTAA+AGG + tig0024078:76201-76220 Msa1414000:intron 25.0%
!! ATTTCCTTTAAAGAACACTA+TGG - tig0024078:76208-76227 None:intergenic 25.0%
! TTTAACCTAAACACAAAACA+CGG - tig0024078:76643-76662 None:intergenic 25.0%
!! ATTAATAAAGTACTCGGAAA+GGG - tig0024078:76863-76882 None:intergenic 25.0%
!! AATTAATAAAGTACTCGGAA+AGG - tig0024078:76864-76883 None:intergenic 25.0%
! TTTCCGAGTACTTTATTAAT+TGG + tig0024078:76863-76882 Msa1414000:intron 25.0%
! TTCCGAGTACTTTATTAATT+GGG + tig0024078:76864-76883 Msa1414000:intron 25.0%
! AAAACTTATTTCAATACCCT+TGG - tig0024078:76910-76929 None:intergenic 25.0%
! AACATTTCACTATAACTGAA+TGG - tig0024078:76946-76965 None:intergenic 25.0%
! TGTGTAAGATGCATAATTAA+AGG + tig0024078:76976-76995 Msa1414000:intron 25.0%
! TATATATAAAACTCTCAACC+AGG + tig0024078:77023-77042 Msa1414000:intron 25.0%
! ATATATAAAACTCTCAACCA+GGG + tig0024078:77024-77043 Msa1414000:intron 25.0%
! GCCTTATATGAATTCATAAA+TGG + tig0024078:77594-77613 Msa1414000:CDS 25.0%
!! ATAAATGGTGGAACATATAA+GGG + tig0024078:77640-77659 Msa1414000:three_prime_UTR 25.0%
!!! TTAGTGATTTTTAGGAAGAA+AGG + tig0024078:77753-77772 Msa1414000:three_prime_UTR 25.0%
!!! TAGTGATTTTTAGGAAGAAA+GGG + tig0024078:77754-77773 Msa1414000:three_prime_UTR 25.0%
!! AATGGATTGGTTGTGAAAAT+GGG - tig0024078:74928-74947 None:intergenic 30.0%
!! AAATGGATTGGTTGTGAAAA+TGG - tig0024078:74929-74948 None:intergenic 30.0%
!! TTTTGAGAGGAAAAATGGAT+TGG - tig0024078:74941-74960 None:intergenic 30.0%
!! GATGTTTTTGAGAGGAAAAA+TGG - tig0024078:74946-74965 None:intergenic 30.0%
TTGTTGAACCTGAGTATATT+TGG + tig0024078:75154-75173 Msa1414000:five_prime_UTR 30.0%
! TATTTTCCGACTGAAATCAT+AGG + tig0024078:75474-75493 Msa1414000:intron 30.0%
! ATTTTCCGACTGAAATCATA+GGG + tig0024078:75475-75494 Msa1414000:intron 30.0%
ATCAGCTTGACAAACAATTA+AGG + tig0024078:75659-75678 Msa1414000:CDS 30.0%
ACATCTCAAAACCAATTCAT+GGG - tig0024078:75869-75888 None:intergenic 30.0%
TTTATGATCGAAATATCAGG+TGG + tig0024078:75924-75943 Msa1414000:intron 30.0%
! TTCTCTGTATTTGTAGCTTT+TGG + tig0024078:76045-76064 Msa1414000:intron 30.0%
GTACATACTGTGATTTCAAT+TGG - tig0024078:76180-76199 None:intergenic 30.0%
! CTGCTTCAGATTTTTATGTA+CGG + tig0024078:76243-76262 Msa1414000:intron 30.0%
! ATGTACGGAATTTGAAACAA+TGG + tig0024078:76258-76277 Msa1414000:intron 30.0%
! TGTACGGAATTTGAAACAAT+GGG + tig0024078:76259-76278 Msa1414000:intron 30.0%
! GAAGTATTCTGTATGATCTT+AGG + tig0024078:76323-76342 Msa1414000:intron 30.0%
TCTGTATGATCTTAGGATAA+TGG + tig0024078:76330-76349 Msa1414000:intron 30.0%
CATTTCTACAAATAAGCTTG+AGG + tig0024078:76462-76481 Msa1414000:CDS 30.0%
GTAATTGAGATTGACATTCT+AGG - tig0024078:76500-76519 None:intergenic 30.0%
! AATGATATTTTGTCCTGTTC+CGG + tig0024078:76572-76591 Msa1414000:intron 30.0%
! TTGTGTTTAGGTTAAATGAG+TGG + tig0024078:76647-76666 Msa1414000:intron 30.0%
!!! TTTTTTGAACAAAGTGGCTT+AGG + tig0024078:76685-76704 Msa1414000:intron 30.0%
CATATATTACACCATTCATG+TGG - tig0024078:77437-77456 None:intergenic 30.0%
CTGGGAAAAATTCAAATGAT+GGG + tig0024078:77499-77518 Msa1414000:CDS 30.0%
TGGGAAAAATTCAAATGATG+GGG + tig0024078:77500-77519 Msa1414000:CDS 30.0%
!! CTTTTTGACTAGATAAATGG+TGG + tig0024078:77628-77647 Msa1414000:exon 30.0%
! GATAAATGGTGGAACATATA+AGG + tig0024078:77639-77658 Msa1414000:three_prime_UTR 30.0%
! TAAATGGTGGAACATATAAG+GGG + tig0024078:77641-77660 Msa1414000:three_prime_UTR 30.0%
TCTTCCTAAAAATCACTAAC+CGG - tig0024078:77752-77771 None:intergenic 30.0%
!!! GATGTATTCTTTTTAGCTCT+AGG + tig0024078:77787-77806 Msa1414000:three_prime_UTR 30.0%
!!! TATTCTTTTTAGCTCTAGGA+AGG + tig0024078:77791-77810 Msa1414000:three_prime_UTR 30.0%
ATATTGAAGTGAAAAGTGGG+AGG - tig0024078:74835-74854 None:intergenic 35.0%
ATGAATGAGTAAGGTGATGA+TGG - tig0024078:74872-74891 None:intergenic 35.0%
ATCCATGGAATGAATGAGTA+AGG - tig0024078:74881-74900 None:intergenic 35.0%
!!! TTTTATGATGGTGGAATCCA+TGG - tig0024078:74896-74915 None:intergenic 35.0%
!! GAAGGTTGATTTTATGATGG+TGG - tig0024078:74905-74924 None:intergenic 35.0%
!! ATGGATTGGTTGTGAAAATG+GGG - tig0024078:74927-74946 None:intergenic 35.0%
GGTTTGACTGAAACCTTTAA+GGG - tig0024078:74976-74995 None:intergenic 35.0%
AGGTTTGACTGAAACCTTTA+AGG - tig0024078:74977-74996 None:intergenic 35.0%
ACAAATTCATTCCTCCAAGA+AGG - tig0024078:75138-75157 None:intergenic 35.0%
CCAATCAACCAAATATACTC+AGG - tig0024078:75165-75184 None:intergenic 35.0%
CCTGAGTATATTTGGTTGAT+TGG + tig0024078:75162-75181 Msa1414000:five_prime_UTR 35.0%
! TGTTTCTAAAGAGTCAGCTA+TGG + tig0024078:75194-75213 Msa1414000:five_prime_UTR 35.0%
! GATTTTCTTATTCAGGCTAG+TGG + tig0024078:75348-75367 Msa1414000:intron 35.0%
AGGAGCTATATATGGACAAA+GGG - tig0024078:75449-75468 None:intergenic 35.0%
TAGGAGCTATATATGGACAA+AGG - tig0024078:75450-75469 None:intergenic 35.0%
CAATACCCTATGATTTCAGT+CGG - tig0024078:75483-75502 None:intergenic 35.0%
ACTGAGTCTTCAACAATTGA+AGG - tig0024078:75557-75576 None:intergenic 35.0%
! TCTACTATGTTTTCCTTGAG+CGG + tig0024078:75682-75701 Msa1414000:CDS 35.0%
!!! ACTGGTTTTTTTGGAGCTAT+TGG + tig0024078:75706-75725 Msa1414000:CDS 35.0%
GACATCTCAAAACCAATTCA+TGG - tig0024078:75870-75889 None:intergenic 35.0%
GAATTACCTCATCTCCAAAA+GGG - tig0024078:76019-76038 None:intergenic 35.0%
TGAATTACCTCATCTCCAAA+AGG - tig0024078:76020-76039 None:intergenic 35.0%
TTATTGACGATAGTTATCCG+TGG + tig0024078:76421-76440 Msa1414000:CDS 35.0%
CTGATGAAGATGTTATTCCA+CGG - tig0024078:76441-76460 None:intergenic 35.0%
! ATGATATTTTGTCCTGTTCC+GGG + tig0024078:76573-76592 Msa1414000:intron 35.0%
TTAGGTTAAATGAGTGGCTT+AGG + tig0024078:76653-76672 Msa1414000:intron 35.0%
GGGAAAAGGAATAGCATAAA+AGG - tig0024078:76731-76750 None:intergenic 35.0%
ATCTTAGCTAAATGGGGAAA+AGG - tig0024078:76745-76764 None:intergenic 35.0%
AGCGGAAATCTTAGCTAAAT+GGG - tig0024078:76752-76771 None:intergenic 35.0%
! GGCCCAATTAATAAAGTACT+CGG - tig0024078:76869-76888 None:intergenic 35.0%
TTTCACTATAACTGAATGGC+TGG - tig0024078:76942-76961 None:intergenic 35.0%
TAGATATTTATGCATCTCCC+TGG - tig0024078:77044-77063 None:intergenic 35.0%
AAAACTGAAGAGCCAAATCT+TGG + tig0024078:77114-77133 Msa1414000:intron 35.0%
CTGCAACTAATACCAAGATT+TGG - tig0024078:77129-77148 None:intergenic 35.0%
GTATCTCGTTCATGTATAAG+AGG - tig0024078:77224-77243 None:intergenic 35.0%
AGGCTGTGAATAACTGTAAA+AGG + tig0024078:77388-77407 Msa1414000:CDS 35.0%
GGCTGTGAATAACTGTAAAA+GGG + tig0024078:77389-77408 Msa1414000:CDS 35.0%
TGTGAATAACTGTAAAAGGG+TGG + tig0024078:77392-77411 Msa1414000:CDS 35.0%
AATAACTGTAAAAGGGTGGT+AGG + tig0024078:77396-77415 Msa1414000:CDS 35.0%
! CATTTGAATTTTTCCCAGCA+AGG - tig0024078:77497-77516 None:intergenic 35.0%
GCTGGGAAAAATTCAAATGA+TGG + tig0024078:77498-77517 Msa1414000:CDS 35.0%
CATCATTACTCACAAAAAGC+CGG + tig0024078:77730-77749 Msa1414000:three_prime_UTR 35.0%
! AAAGCCGGTTAGTGATTTTT+AGG + tig0024078:77745-77764 Msa1414000:three_prime_UTR 35.0%
!! TGAGTAAGGTGATGATGGAA+TGG - tig0024078:74867-74886 None:intergenic 40.0%
CACCTTACTCATTCATTCCA+TGG + tig0024078:74876-74895 Msa1414000:five_prime_UTR 40.0%
!! GGGGAAGGTTGATTTTATGA+TGG - tig0024078:74908-74927 None:intergenic 40.0%
ATTGGTTGTGAAAATGGGGA+AGG - tig0024078:74923-74942 None:intergenic 40.0%
!! GTCTGAGAGATGTTTTTGAG+AGG - tig0024078:74954-74973 None:intergenic 40.0%
AACATCTCTCAGACCCTTAA+AGG + tig0024078:74960-74979 Msa1414000:five_prime_UTR 40.0%
! TCTAGCTTGTAGTTGAAGTC+AGG - tig0024078:75006-75025 None:intergenic 40.0%
TTACCCTGAGTTGCTTGATT+TGG + tig0024078:75062-75081 Msa1414000:five_prime_UTR 40.0%
!! TTGCTTGATTTGGCTGACAA+TGG + tig0024078:75072-75091 Msa1414000:five_prime_UTR 40.0%
! TGACAATGGTAGCTTGGTTT+TGG + tig0024078:75086-75105 Msa1414000:five_prime_UTR 40.0%
!!! TGGTTTTGGTTCAGAAGAAG+AGG + tig0024078:75100-75119 Msa1414000:five_prime_UTR 40.0%
TTGGTTCAGAAGAAGAGGTT+TGG + tig0024078:75105-75124 Msa1414000:five_prime_UTR 40.0%
! TTCTAAAGAGTCAGCTATGG+AGG + tig0024078:75197-75216 Msa1414000:five_prime_UTR 40.0%
AGCTCAACAACCACATTATC+TGG - tig0024078:75249-75268 None:intergenic 40.0%
TTGTTGAGCTATGTAGAAGC+AGG + tig0024078:75259-75278 Msa1414000:CDS 40.0%
CAGATTTCATTTCCAGAGCT+GGG + tig0024078:75617-75636 Msa1414000:intron 40.0%
! CTACTATGTTTTCCTTGAGC+GGG + tig0024078:75683-75702 Msa1414000:CDS 40.0%
GAACAAAAATGTGCTTACCG+AGG - tig0024078:75744-75763 None:intergenic 40.0%
! TTTGGCATTGAGATTACTCC+TGG + tig0024078:75956-75975 Msa1414000:CDS 40.0%
TCTTTGATGAAAAAGCAGCC+AGG - tig0024078:75977-75996 None:intergenic 40.0%
! TCAAATATTGACCGCCCTTT+TGG + tig0024078:76002-76021 Msa1414000:CDS 40.0%
!!! CACAACTAGTTTTGGGAGAT+AGG + tig0024078:76154-76173 Msa1414000:CDS 40.0%
! TTTTGTAGCTTCAGAGAGCA+TGG + tig0024078:76368-76387 Msa1414000:intron 40.0%
GGGATCAAGCATATAAAAGC+AGG - tig0024078:76545-76564 None:intergenic 40.0%
! AAGGTCCGTGTTTTGTGTTT+AGG + tig0024078:76635-76654 Msa1414000:intron 40.0%
GCGGAAATCTTAGCTAAATG+GGG - tig0024078:76751-76770 None:intergenic 40.0%
GAGCGGAAATCTTAGCTAAA+TGG - tig0024078:76753-76772 None:intergenic 40.0%
ACGAAAACCGTAGCTTAGTA+GGG - tig0024078:76784-76803 None:intergenic 40.0%
AACGAAAACCGTAGCTTAGT+AGG - tig0024078:76785-76804 None:intergenic 40.0%
! TACTAAGCTACGGTTTTCGT+TGG + tig0024078:76784-76803 Msa1414000:intron 40.0%
! ACTAAGCTACGGTTTTCGTT+GGG + tig0024078:76785-76804 Msa1414000:intron 40.0%
TGGTCTGCGAACTGTTTAAT+CGG - tig0024078:76890-76909 None:intergenic 40.0%
ATTAAACAGTTCGCAGACCA+AGG + tig0024078:76890-76909 Msa1414000:intron 40.0%
TTAAACAGTTCGCAGACCAA+GGG + tig0024078:76891-76910 Msa1414000:intron 40.0%
CAGAAAGCAAGTTCAGATGA+TGG + tig0024078:77146-77165 Msa1414000:intron 40.0%
ATGTATAAGAGGCGGCAATA+GGG - tig0024078:77213-77232 None:intergenic 40.0%
TCTCGTTCATGTATAAGAGG+CGG - tig0024078:77221-77240 None:intergenic 40.0%
!!! CGATGCAATTTTTGAGTGAG+AGG - tig0024078:77261-77280 None:intergenic 40.0%
TTGTTCTGCAGTATCTTGCA+TGG + tig0024078:77349-77368 Msa1414000:intron 40.0%
ATTGGAAAAGGCCACATGAA+TGG + tig0024078:77423-77442 Msa1414000:CDS 40.0%
TATGCACTGTTAGCTGATAC+AGG + tig0024078:77453-77472 Msa1414000:CDS 40.0%
ATGCACTGTTAGCTGATACA+GGG + tig0024078:77454-77473 Msa1414000:CDS 40.0%
! TCAAATGATGGGGCTTCTAA+TGG + tig0024078:77510-77529 Msa1414000:CDS 40.0%
ACCTAGTCAAGAGTTTAGTG+AGG + tig0024078:77544-77563 Msa1414000:CDS 40.0%
CCTAGTCAAGAGTTTAGTGA+GGG + tig0024078:77545-77564 Msa1414000:CDS 40.0%
GGTGATTGGCATTGTCTTAT+GGG + tig0024078:77572-77591 Msa1414000:CDS 40.0%
! GTATCACTTTCACTGACTAG+AGG - tig0024078:77890-77909 None:intergenic 40.0%
CTAGTCAGTGAAAGTGATAC+AGG + tig0024078:77890-77909 Msa1414000:three_prime_UTR 40.0%
TTGTAGTTGAAGTCAGGTGG+TGG - tig0024078:75000-75019 None:intergenic 45.0%
AGCTTGTAGTTGAAGTCAGG+TGG - tig0024078:75003-75022 None:intergenic 45.0%
CAGCCAAATCAAGCAACTCA+GGG - tig0024078:75068-75087 None:intergenic 45.0%
TCAGCCAAATCAAGCAACTC+AGG - tig0024078:75069-75088 None:intergenic 45.0%
TTTGGCTGACAATGGTAGCT+TGG + tig0024078:75080-75099 Msa1414000:five_prime_UTR 45.0%
TCATTCCTCCAAGAAGGAAC+AGG - tig0024078:75132-75151 None:intergenic 45.0%
AGCTGTGAAGCCAGATAATG+TGG + tig0024078:75236-75255 Msa1414000:exon 45.0%
GCAGATTTCATTTCCAGAGC+TGG + tig0024078:75616-75635 Msa1414000:intron 45.0%
AAAAAAACCAGTCCCGCTCA+AGG - tig0024078:75698-75717 None:intergenic 45.0%
!!! TTGAGCGGGACTGGTTTTTT+TGG + tig0024078:75697-75716 Msa1414000:CDS 45.0%
ATTGGCCGTAGCATAAACCT+CGG + tig0024078:75724-75743 Msa1414000:CDS 45.0%
GCTTACCGAGGTTTATGCTA+CGG - tig0024078:75732-75751 None:intergenic 45.0%
ATCAGGTGGTCAAACTGCTT+TGG + tig0024078:75938-75957 Msa1414000:intron 45.0%
TTACCTCATCTCCAAAAGGG+CGG - tig0024078:76016-76035 None:intergenic 45.0%
!! CGAAAAGTGTCAGAGGAAGT+TGG + tig0024078:76129-76148 Msa1414000:CDS 45.0%
!! AGTTGGCGCACAACTAGTTT+TGG + tig0024078:76146-76165 Msa1414000:CDS 45.0%
!!! GTTGGCGCACAACTAGTTTT+GGG + tig0024078:76147-76166 Msa1414000:CDS 45.0%
!! GAGCATGGAAGGCTTTGAAT+TGG + tig0024078:76383-76402 Msa1414000:CDS 45.0%
! AGAGCGTCTAGGATATCTAC+CGG + tig0024078:76597-76616 Msa1414000:intron 45.0%
CAAAACACGGACCTTGAACA+TGG - tig0024078:76630-76649 None:intergenic 45.0%
TAGCTAAGATTTCCGCTCTC+TGG + tig0024078:76755-76774 Msa1414000:intron 45.0%
AGCTAAGATTTCCGCTCTCT+GGG + tig0024078:76756-76775 Msa1414000:intron 45.0%
AGTAGAATCCGAATAGGCAC+AGG - tig0024078:76822-76841 None:intergenic 45.0%
GTGCCTATTCGGATTCTACT+CGG + tig0024078:76822-76841 Msa1414000:intron 45.0%
CATGTATAAGAGGCGGCAAT+AGG - tig0024078:77214-77233 None:intergenic 45.0%
TAGGACTTGTCACACGCAAA+AGG - tig0024078:77290-77309 None:intergenic 45.0%
! ATCTTGCATGGTCTCTGAAG+CGG + tig0024078:77361-77380 Msa1414000:CDS 45.0%
AAAAGGGTGGTAGGTGTGAT+TGG + tig0024078:77405-77424 Msa1414000:CDS 45.0%
GTGGTAGGTGTGATTGGAAA+AGG + tig0024078:77411-77430 Msa1414000:CDS 45.0%
TTGAGATTTCGAGACCTTGC+TGG + tig0024078:77480-77499 Msa1414000:CDS 45.0%
TGAGATTTCGAGACCTTGCT+GGG + tig0024078:77481-77500 Msa1414000:CDS 45.0%
CCCTCACTAAACTCTTGACT+AGG - tig0024078:77548-77567 None:intergenic 45.0%
CAAGAGTTTAGTGAGGGACA+CGG + tig0024078:77551-77570 Msa1414000:CDS 45.0%
CGGTGATTGGCATTGTCTTA+TGG + tig0024078:77571-77590 Msa1414000:CDS 45.0%
! TAGTTGAAGTCAGGTGGTGG+AGG - tig0024078:74997-75016 None:intergenic 50.0%
! GGTTTGGTCCTGTTCCTTCT+TGG + tig0024078:75121-75140 Msa1414000:five_prime_UTR 50.0%
TTGGTCCTGTTCCTTCTTGG+AGG + tig0024078:75124-75143 Msa1414000:five_prime_UTR 50.0%
AGCATACATGATCCCAGCTC+TGG - tig0024078:75632-75651 None:intergenic 50.0%
! ATGTTTTCCTTGAGCGGGAC+TGG + tig0024078:75688-75707 Msa1414000:CDS 50.0%
! GTAGCTTCAGAGAGCATGGA+AGG + tig0024078:76372-76391 Msa1414000:intron 50.0%
GATATCCTAGACGCTCTACC+CGG - tig0024078:76594-76613 None:intergenic 50.0%
! CGGTTTTCGTTGGGAATCCT+TGG + tig0024078:76794-76813 Msa1414000:intron 50.0%
CCTTGGAACCTGTGCCTATT+CGG + tig0024078:76811-76830 Msa1414000:intron 50.0%
GAGCCGAGTAGAATCCGAAT+AGG - tig0024078:76828-76847 None:intergenic 50.0%
ATAAGAGGCGGCAATAGGGA+TGG - tig0024078:77209-77228 None:intergenic 50.0%
TGCGTGTGACAAGTCCTACA+AGG + tig0024078:77292-77311 Msa1414000:intron 50.0%
!! CTTGGGAGTTGTAGCCTTGT+AGG - tig0024078:77309-77328 None:intergenic 50.0%
! ATGATGGGGCTTCTAATGGC+TGG + tig0024078:77514-77533 Msa1414000:CDS 50.0%
TTAGTGAGGGACACGGTGAT+TGG + tig0024078:77558-77577 Msa1414000:CDS 50.0%
!! TGACCGCCCTTTTGGAGATG+AGG + tig0024078:76010-76029 Msa1414000:CDS 55.0%
!! CTGACACTTTTCGAGCAGCG+CGG - tig0024078:76122-76141 None:intergenic 55.0%
!! CGCTGCTCGAAAAGTGTCAG+AGG + tig0024078:76122-76141 Msa1414000:CDS 55.0%
CCTTGAACATGGCACACTGC+CGG - tig0024078:76619-76638 None:intergenic 55.0%
! TTAGTAGGGTGCCCAGAGAG+CGG - tig0024078:76770-76789 None:intergenic 55.0%
CTGGGCACCCTACTAAGCTA+CGG + tig0024078:76774-76793 Msa1414000:intron 55.0%
CCGAATAGGCACAGGTTCCA+AGG - tig0024078:76814-76833 None:intergenic 55.0%
!! ATGGTCTCTGAAGCGGAGCA+AGG + tig0024078:77368-77387 Msa1414000:CDS 55.0%
CTAGACGCTCTACCCGGAAC+AGG - tig0024078:76588-76607 None:intergenic 60.0%
! CTGTTCCGGGTAGAGCGTCT+AGG + tig0024078:76586-76605 Msa1414000:intron 60.0%
CCGGCAGTGTGCCATGTTCA+AGG + tig0024078:76616-76635 Msa1414000:intron 60.0%
Chromosome Type Strat End Strand Name
tig0024078 gene 74818 77952 74818 ID=Msa1414000;Name=Msa1414000
tig0024078 mRNA 74818 77952 74818 ID=Msa1414000-mRNA-1;Parent=Msa1414000;Name=Msa1414000-mRNA-1;_AED=0.20;_eAED=0.20;_QI=435|0.66|0.71|1|0.83|1|7|317|263
tig0024078 exon 74818 75280 74818 ID=Msa1414000-mRNA-1:exon:21497;Parent=Msa1414000-mRNA-1
tig0024078 exon 75620 75745 75620 ID=Msa1414000-mRNA-1:exon:21498;Parent=Msa1414000-mRNA-1
tig0024078 exon 75943 76031 75943 ID=Msa1414000-mRNA-1:exon:21499;Parent=Msa1414000-mRNA-1
tig0024078 exon 76117 76191 76117 ID=Msa1414000-mRNA-1:exon:21500;Parent=Msa1414000-mRNA-1
tig0024078 exon 76382 76483 76382 ID=Msa1414000-mRNA-1:exon:21501;Parent=Msa1414000-mRNA-1
tig0024078 exon 77149 77244 77149 ID=Msa1414000-mRNA-1:exon:21502;Parent=Msa1414000-mRNA-1
tig0024078 exon 77360 77952 77360 ID=Msa1414000-mRNA-1:exon:21503;Parent=Msa1414000-mRNA-1
tig0024078 five_prime_UTR 74818 75252 74818 ID=Msa1414000-mRNA-1:five_prime_utr;Parent=Msa1414000-mRNA-1
tig0024078 CDS 75253 75280 75253 ID=Msa1414000-mRNA-1:cds;Parent=Msa1414000-mRNA-1
tig0024078 CDS 75620 75745 75620 ID=Msa1414000-mRNA-1:cds;Parent=Msa1414000-mRNA-1
tig0024078 CDS 75943 76031 75943 ID=Msa1414000-mRNA-1:cds;Parent=Msa1414000-mRNA-1
tig0024078 CDS 76117 76191 76117 ID=Msa1414000-mRNA-1:cds;Parent=Msa1414000-mRNA-1
tig0024078 CDS 76382 76483 76382 ID=Msa1414000-mRNA-1:cds;Parent=Msa1414000-mRNA-1
tig0024078 CDS 77149 77244 77149 ID=Msa1414000-mRNA-1:cds;Parent=Msa1414000-mRNA-1
tig0024078 CDS 77360 77635 77360 ID=Msa1414000-mRNA-1:cds;Parent=Msa1414000-mRNA-1
tig0024078 three_prime_UTR 77636 77952 77636 ID=Msa1414000-mRNA-1:three_prime_utr;Parent=Msa1414000-mRNA-1
Gene Sequence

>Msa1414000

ATGTGGTTGTTGAGCTATGTAGAAGCAGATTTCATTTCCAGAGCTGGGATCATGTATGCTGATGATGATCAGCTTGACAAACAATTAAGGTCTACTATGTTTTCCTTGAGCGGGACTGGTTTTTTTGGAGCTATTGGCCGTAGCATAAACCTCGGTGGTCAAACTGCTTTGGCATTGAGATTACTCCTGGCTGCTTTTTCATCAAAGATATCTTCAAATATTGACCGCCCTTTTGGAGATGAGTTCCGCGCTGCTCGAAAAGTGTCAGAGGAAGTTGGCGCACAACTAGTTTTGGGAGATAGGCCAATTGAAATCACAAGAGCATGGAAGGCTTTGAATTGGACTCAGAAGTTGAGTTTATTGACGATAGTTATCCGTGGAATAACATCTTCATCAGACATTTCTACAAATAAGCTTGAGAAAGCAAGTTCAGATGATGGTACACTTCAGCTTTATGAGCAGCTGAGTTTTTCATATCCATCCCTATTGCCGCCTCTTATACATGAACGAGATACTTATCTTGCATGGTCTCTGAAGCGGAGCAAGGCTGTGAATAACTGTAAAAGGGTGGTAGGTGTGATTGGAAAAGGCCACATGAATGGTGTAATATATGCACTGTTAGCTGATACAGGGAATTTGAGATTTCGAGACCTTGCTGGGAAAAATTCAAATGATGGGGCTTCTAATGGCTGGATCGATGACCTAGTCAAGAGTTTAGTGAGGGACACGGTGATTGGCATTGTCTTATGGGCCTTATATGAATTCATAAATGGTGGAACATTTTCTTTTTGA

Protein sequence

>Msa1414000

MWLLSYVEADFISRAGIMYADDDQLDKQLRSTMFSLSGTGFFGAIGRSINLGGQTALALRLLLAAFSSKISSNIDRPFGDEFRAARKVSEEVGAQLVLGDRPIEITRAWKALNWTQKLSLLTIVIRGITSSSDISTNKLEKASSDDGTLQLYEQLSFSYPSLLPPLIHERDTYLAWSLKRSKAVNNCKRVVGVIGKGHMNGVIYALLADTGNLRFRDLAGKNSNDGASNGWIDDLVKSLVRDTVIGIVLWALYEFINGGTFSF*