Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277070 | KEH20648.1 | 88.406 | 69 | 5 | 2 | 1 | 68 | 55 | 121 | 2.16e-32 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277070 | sp|O23262|RLF32_ARATH | 56.452 | 62 | 23 | 3 | 1 | 60 | 54 | 113 | 1.25e-14 | 66.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277070 | A0A072TUW6 | 88.406 | 69 | 5 | 2 | 1 | 68 | 55 | 121 | 1.03e-32 | 119 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0165210 | Msa0277070 | 0.810200 | 1.297395e-50 | -8.615850e-47 |
| Msa0180500 | Msa0277070 | 0.836087 | 1.149274e-56 | -8.615850e-47 |
| Msa0214300 | Msa0277070 | 0.803460 | 3.449658e-49 | -8.615850e-47 |
| Msa0239090 | Msa0277070 | 0.800562 | 1.359427e-48 | -8.615850e-47 |
| Msa0239240 | Msa0277070 | 0.811348 | 7.321869e-51 | -8.615850e-47 |
| Msa0251640 | Msa0277070 | 0.802317 | 5.940667e-49 | -8.615850e-47 |
| Msa0277070 | Msa0278110 | 0.811085 | 8.349679e-51 | -8.615850e-47 |
| Msa0277070 | Msa0292930 | 0.805191 | 1.504071e-49 | -8.615850e-47 |
| Msa0277070 | Msa0317010 | 0.804166 | 2.461002e-49 | -8.615850e-47 |
| Msa0277070 | Msa0339620 | 0.821758 | 3.404876e-53 | -8.615850e-47 |
| Msa0277070 | Msa0342750 | 0.811816 | 5.794413e-51 | -8.615850e-47 |
| Msa0277070 | Msa0424320 | 0.819007 | 1.455694e-52 | -8.615850e-47 |
| Msa0277070 | Msa0443260 | 0.803509 | 3.369217e-49 | -8.615850e-47 |
| Msa0277070 | Msa0467640 | -0.804580 | 2.017694e-49 | -8.615850e-47 |
| Msa0277070 | Msa0509900 | 0.803202 | 3.901111e-49 | -8.615850e-47 |
| Msa0277070 | Msa0514070 | -0.805639 | 1.211243e-49 | -8.615850e-47 |
| Msa0277070 | Msa0519000 | 0.806110 | 9.646855e-50 | -8.615850e-47 |
| Msa0277070 | Msa0523940 | 0.829932 | 3.902220e-55 | -8.615850e-47 |
| Msa0277070 | Msa0537720 | 0.801828 | 7.488339e-49 | -8.615850e-47 |
| Msa0277070 | Msa0585230 | 0.838794 | 2.327617e-57 | -8.615850e-47 |
| Msa0277070 | Msa0602390 | 0.803283 | 3.752702e-49 | -8.615850e-47 |
| Msa0277070 | Msa0649110 | 0.808800 | 2.591749e-50 | -8.615850e-47 |
| Msa0277070 | Msa0650630 | 0.811121 | 8.204160e-51 | -8.615850e-47 |
| Msa0277070 | Msa0672690 | 0.809461 | 1.870791e-50 | -8.615850e-47 |
| Msa0277070 | Msa0681250 | 0.814289 | 1.661676e-51 | -8.615850e-47 |
| Msa0277070 | Msa0681270 | 0.818883 | 1.553616e-52 | -8.615850e-47 |
| Msa0277070 | Msa0701010 | 0.830203 | 3.351111e-55 | -8.615850e-47 |
| Msa0277070 | Msa0731940 | 0.800755 | 1.242005e-48 | -8.615850e-47 |
| Msa0277070 | Msa0767760 | 0.801627 | 8.235916e-49 | -8.615850e-47 |
| Msa0277070 | Msa0844490 | 0.823285 | 1.504213e-53 | -8.615850e-47 |
| Msa0277070 | Msa0857640 | 0.810843 | 9.424210e-51 | -8.615850e-47 |
| Msa0277070 | Msa0877250 | 0.817464 | 3.252961e-52 | -8.615850e-47 |
| Msa0277070 | Msa0897330 | 0.829084 | 6.273726e-55 | -8.615850e-47 |
| Msa0277070 | Msa0899450 | 0.800108 | 1.682130e-48 | -8.615850e-47 |
| Msa0277070 | Msa0907950 | 0.809622 | 1.727260e-50 | -8.615850e-47 |
| Msa0277070 | Msa0927380 | 0.822660 | 2.103279e-53 | -8.615850e-47 |
| Msa0277070 | Msa0931520 | 0.806370 | 8.500923e-50 | -8.615850e-47 |
| Msa0277070 | Msa0952720 | 0.810042 | 1.403001e-50 | -8.615850e-47 |
| Msa0277070 | Msa0953120 | 0.818737 | 1.677183e-52 | -8.615850e-47 |
| Msa0277070 | Msa0958550 | 0.803024 | 4.247312e-49 | -8.615850e-47 |
| Msa0277070 | Msa0964900 | 0.808784 | 2.612776e-50 | -8.615850e-47 |
| Msa0277070 | Msa0967280 | 0.809446 | 1.885147e-50 | -8.615850e-47 |
| Msa0277070 | Msa0969520 | 0.802983 | 4.330197e-49 | -8.615850e-47 |
| Msa0277070 | Msa0974080 | 0.834285 | 3.274787e-56 | -8.615850e-47 |
| Msa0277070 | Msa0976670 | 0.803155 | 3.989973e-49 | -8.615850e-47 |
| Msa0277070 | Msa1000880 | 0.802782 | 4.764999e-49 | -8.615850e-47 |
| Msa0277070 | Msa1000900 | 0.809034 | 2.309510e-50 | -8.615850e-47 |
| Msa0277070 | Msa1003620 | 0.805694 | 1.179748e-49 | -8.615850e-47 |
| Msa0277070 | Msa1014540 | 0.825116 | 5.584657e-54 | -8.615850e-47 |
| Msa0277070 | Msa1030970 | 0.829564 | 4.796163e-55 | -8.615850e-47 |
| Msa0277070 | Msa1075540 | 0.840138 | 1.041330e-57 | -8.615850e-47 |
| Msa0277070 | Msa1075650 | 0.811338 | 7.360754e-51 | -8.615850e-47 |
| Msa0277070 | Msa1113170 | 0.840194 | 1.007066e-57 | -8.615850e-47 |
| Msa0277070 | Msa1137570 | 0.818729 | 1.683968e-52 | -8.615850e-47 |
| Msa0277070 | Msa1277660 | 0.827128 | 1.855815e-54 | -8.615850e-47 |
| Msa0277070 | Msa1284680 | 0.824028 | 1.007853e-53 | -8.615850e-47 |
| Msa0277070 | Msa1306850 | 0.800502 | 1.398701e-48 | -8.615850e-47 |
| Msa0277070 | Msa1331000 | 0.806310 | 8.753659e-50 | -8.615850e-47 |
| Msa0277070 | Msa1372760 | 0.804249 | 2.364738e-49 | -8.615850e-47 |
| Msa0277070 | Msa1395900 | 0.808698 | 2.724795e-50 | -8.615850e-47 |
| Msa0277070 | Msa1402730 | 0.808832 | 2.551036e-50 | -8.615850e-47 |
| Msa0277070 | Msa1412530 | 0.802367 | 5.802393e-49 | -8.615850e-47 |
| Msa0277070 | Msa1427230 | 0.805623 | 1.220994e-49 | -8.615850e-47 |
| Msa0277070 | Msa1460830 | 0.801851 | 7.407469e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277070 | MtrunA17_Chr8g0378021 | 88.406 | 69 | 5 | 2 | 1 | 68 | 55 | 121 | 1.99e-36 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0277070 | AT4G14010.1 | 56.452 | 62 | 23 | 3 | 1 | 60 | 54 | 113 | 1.27e-15 | 66.6 |
Find 21 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGGATTTAGAGGCCATTTC+CGG | 0.240394 | 2_3:+9404073 | Msa0277070:CDS |
| TGATTTGTGTAAACAAATAT+TGG | 0.254521 | 2_3:+9404108 | Msa0277070:CDS |
| TTAGAACATCCTCTATTATA+AGG | 0.295895 | 2_3:-9400342 | None:intergenic |
| GTTCTAAGCATTATCGTTGT+AGG | 0.352031 | 2_3:+9400358 | Msa0277070:CDS |
| TTTCAGACCGCCGGATTTAG+AGG | 0.363006 | 2_3:+9404063 | Msa0277070:intron |
| CAAATCAACGTCGAAGTTGC+CGG | 0.380209 | 2_3:-9404092 | None:intergenic |
| AACGTCGAAGTTGCCGGAAA+TGG | 0.391335 | 2_3:-9404086 | None:intergenic |
| CCTCTATTATAAGGATTTGA+AGG | 0.425611 | 2_3:-9400333 | None:intergenic |
| CCGGAAATGGCCTCTAAATC+CGG | 0.426478 | 2_3:-9404073 | None:intergenic |
| CCTGCACCACCATTACAAAC+TGG | 0.436595 | 2_3:-9400270 | None:intergenic |
| CCAGTTTGTAATGGTGGTGC+AGG | 0.477210 | 2_3:+9400270 | Msa0277070:CDS |
| GAAGCTTATAGTAAATCTGC+AGG | 0.482571 | 2_3:+9400297 | Msa0277070:CDS |
| CCTTCAAATCCTTATAATAG+AGG | 0.483889 | 2_3:+9400333 | Msa0277070:CDS |
| AGAGATAAACCAGTTTGTAA+TGG | 0.496902 | 2_3:+9400261 | Msa0277070:CDS |
| TGGAGTCTGAAATAAGCATA+AGG | 0.516890 | 2_3:+9400199 | Msa0277070:CDS |
| GATAAACCAGTTTGTAATGG+TGG | 0.534773 | 2_3:+9400264 | Msa0277070:CDS |
| TTATAAGGATTTGAAGGTGG+AGG | 0.542122 | 2_3:-9400327 | None:intergenic |
| CAAAGGAGATACATTTCTGA+AGG | 0.595659 | 2_3:+9400231 | Msa0277070:CDS |
| CTATTATAAGGATTTGAAGG+TGG | 0.614457 | 2_3:-9400330 | None:intergenic |
| AAGCTTATAGTAAATCTGCA+GGG | 0.685299 | 2_3:+9400298 | Msa0277070:CDS |
| GAAATGGCCTCTAAATCCGG+CGG | 0.723342 | 2_3:-9404070 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTTATTTTTTTAT+AGG | - | chr2_3:9401199-9401218 | None:intergenic | 0.0% |
| !! | AAAAAAATTTATAATTTAAT+AGG | + | chr2_3:9401525-9401544 | Msa0277070:intron | 0.0% |
| !!! | ATTTTTATTTTTTTATAGGA+AGG | - | chr2_3:9401195-9401214 | None:intergenic | 10.0% |
| !!! | ACATATTTTAATTTTGTTTT+GGG | - | chr2_3:9403247-9403266 | None:intergenic | 10.0% |
| !!! | AATGAATTTTTTTTCTTAAA+TGG | + | chr2_3:9403412-9403431 | Msa0277070:intron | 10.0% |
| !!! | TTTTATGACTTTTTTGTATT+TGG | + | chr2_3:9400444-9400463 | Msa0277070:intron | 15.0% |
| !! | TTCAAAAAAAAAAAAGTTGA+CGG | - | chr2_3:9401284-9401303 | None:intergenic | 15.0% |
| !! | TGTATCAATTATACTTTATT+CGG | + | chr2_3:9401567-9401586 | Msa0277070:intron | 15.0% |
| !!! | CAAAGTTTTTTTTTTTTGAA+AGG | - | chr2_3:9401648-9401667 | None:intergenic | 15.0% |
| !!! | GCTTTAATAACTAAATTTTT+AGG | - | chr2_3:9402436-9402455 | None:intergenic | 15.0% |
| !! | ATTATATTAGTGTTCAAATT+CGG | + | chr2_3:9402749-9402768 | Msa0277070:intron | 15.0% |
| !!! | TAATGATACATTAATTTTGA+CGG | + | chr2_3:9402969-9402988 | Msa0277070:intron | 15.0% |
| !!! | GTTGTTTCATATTTTATTAT+AGG | - | chr2_3:9403225-9403244 | None:intergenic | 15.0% |
| !!! | CACATATTTTAATTTTGTTT+TGG | - | chr2_3:9403248-9403267 | None:intergenic | 15.0% |
| !! | TTACTAAAGAAAATTAATCA+TGG | + | chr2_3:9403272-9403291 | Msa0277070:intron | 15.0% |
| !! | AGTGCATATTTAATTATTAA+CGG | + | chr2_3:9403494-9403513 | Msa0277070:intron | 15.0% |
| !!! | AAATAGCATTACTTTATTTT+AGG | + | chr2_3:9403615-9403634 | Msa0277070:intron | 15.0% |
| !!! | TTATTTTAGGAAAACAAATA+AGG | + | chr2_3:9403628-9403647 | Msa0277070:intron | 15.0% |
| !!! | TTGGATCAAAATATATTTTT+TGG | + | chr2_3:9403738-9403757 | Msa0277070:intron | 15.0% |
| !! | TTGAATTGAACTTATTTAGA+AGG | - | chr2_3:9400531-9400550 | None:intergenic | 20.0% |
| !! | GATTATTAAAACAAAAATCG+TGG | - | chr2_3:9400572-9400591 | None:intergenic | 20.0% |
| !! | TGTATAAGATTGAAGTTTAA+AGG | - | chr2_3:9401166-9401185 | None:intergenic | 20.0% |
| !!! | ATTGTATTTGCCTAATATTT+TGG | - | chr2_3:9401751-9401770 | None:intergenic | 20.0% |
| !! | ATTAGATTAGTGTTCAAATT+CGG | + | chr2_3:9401815-9401834 | Msa0277070:intron | 20.0% |
| !! | ATTAGATTAGTGTTCAAATT+GGG | + | chr2_3:9401815-9401834 | Msa0277070:intron | 20.0% |
| !!! | ATACATTGTTTGGATAATTT+TGG | + | chr2_3:9402092-9402111 | Msa0277070:intron | 20.0% |
| !!! | GCTTCAATAACTAAATTTTT+AGG | - | chr2_3:9402667-9402686 | None:intergenic | 20.0% |
| !! | CATGATAGTTTAATATATTG+CGG | + | chr2_3:9403117-9403136 | Msa0277070:intron | 20.0% |
| !!! | TCTAAAGTCTAACAAATATT+TGG | + | chr2_3:9403719-9403738 | Msa0277070:intron | 20.0% |
| !!! | AATAAAAGTGTGTCTTTTAA+AGG | - | chr2_3:9404020-9404039 | None:intergenic | 20.0% |
| !!! | TGATTTGTGTAAACAAATAT+TGG | + | chr2_3:9404108-9404127 | Msa0277070:CDS | 20.0% |
| !! | TGAAATAAGCATAAGGTTTT+TGG | + | chr2_3:9400206-9400225 | Msa0277070:CDS | 25.0% |
| ! | TTAGAACATCCTCTATTATA+AGG | - | chr2_3:9400345-9400364 | None:intergenic | 25.0% |
| ! | TATACATGAGATGATTAGAA+GGG | - | chr2_3:9400748-9400767 | None:intergenic | 25.0% |
| ! | ATATACATGAGATGATTAGA+AGG | - | chr2_3:9400749-9400768 | None:intergenic | 25.0% |
| !!! | AACCACTTTTTTACAACTTT+TGG | + | chr2_3:9400911-9400930 | Msa0277070:intron | 25.0% |
| ! | TTCTTATTGGTCAAAAACAA+TGG | - | chr2_3:9400996-9401015 | None:intergenic | 25.0% |
| !!! | TTGTTTTTCTCACTTCTTAT+TGG | - | chr2_3:9401009-9401028 | None:intergenic | 25.0% |
| ! | AATAAGAAGTGAGAAAAACA+AGG | + | chr2_3:9401008-9401027 | Msa0277070:intron | 25.0% |
| ! | AATATAAATCACACACGAAA+TGG | - | chr2_3:9401120-9401139 | None:intergenic | 25.0% |
| ! | AAAGGAAGAACATACTTTAT+AGG | - | chr2_3:9401148-9401167 | None:intergenic | 25.0% |
| !!! | TAGTTTTTCAAAACAACTAC+TGG | - | chr2_3:9401325-9401344 | None:intergenic | 25.0% |
| !!! | TATTCGGATAATTTTAGTAG+TGG | + | chr2_3:9401583-9401602 | Msa0277070:intron | 25.0% |
| ! | TCAAAGCAAACCAAAATATT+AGG | + | chr2_3:9401738-9401757 | Msa0277070:intron | 25.0% |
| !! | GCTTTAATAACTCAATTTTG+AGG | - | chr2_3:9401964-9401983 | None:intergenic | 25.0% |
| !! | TTAAAGCAAACCAAAGTATT+AGG | + | chr2_3:9401977-9401996 | Msa0277070:intron | 25.0% |
| ! | CATTAGATTAGTGTTCAAAT+TGG | + | chr2_3:9401814-9401833 | Msa0277070:intron | 25.0% |
| ! | AACAATGTATAACTCATACA+CGG | - | chr2_3:9402082-9402101 | None:intergenic | 25.0% |
| ! | TGTATGAGTTATACATTGTT+TGG | + | chr2_3:9402082-9402101 | Msa0277070:intron | 25.0% |
| !!! | TTTGGTTTGCTTTAATAACT+CGG | - | chr2_3:9401972-9401991 | None:intergenic | 25.0% |
| !! | TTAAAGCAAACCAAAGTATT+AGG | + | chr2_3:9401977-9401996 | Msa0277070:intron | 25.0% |
| ! | AAACTCTTAGTTCATCTTAT+TGG | + | chr2_3:9401921-9401940 | Msa0277070:intron | 25.0% |
| !! | TTAAAGCAAACCAAAGTATT+AGG | + | chr2_3:9401977-9401996 | Msa0277070:intron | 25.0% |
| !!! | TTGGTAGTGGAAATTTTAAA+TGG | + | chr2_3:9402575-9402594 | Msa0277070:intron | 25.0% |
| ! | AAACTCTTAGTTCATCTTAT+TGG | + | chr2_3:9401921-9401940 | Msa0277070:intron | 25.0% |
| !! | AAGAGTGTATAATTGTTACA+CGG | - | chr2_3:9402777-9402796 | None:intergenic | 25.0% |
| ! | TGTAACAATTATACACTCTT+CGG | + | chr2_3:9402777-9402796 | Msa0277070:intron | 25.0% |
| !! | TTAAAGCAAACCAAAGTATT+AGG | + | chr2_3:9401977-9401996 | Msa0277070:intron | 25.0% |
| !! | AACCCAATTCTAAATTTTAG+TGG | + | chr2_3:9403681-9403700 | Msa0277070:intron | 25.0% |
| !! | CTCCACTAAAATTTAGAATT+GGG | - | chr2_3:9403686-9403705 | None:intergenic | 25.0% |
| !! | TCTCCACTAAAATTTAGAAT+TGG | - | chr2_3:9403687-9403706 | None:intergenic | 25.0% |
| ! | TGGTCAATACAACTATATAA+TGG | + | chr2_3:9403789-9403808 | Msa0277070:intron | 25.0% |
| ! | GTAAAATATAAACTGATGAG+TGG | + | chr2_3:9403819-9403838 | Msa0277070:intron | 25.0% |
| !! | GCATAATGTTAATTTTTCTG+TGG | + | chr2_3:9403847-9403866 | Msa0277070:intron | 25.0% |
| AGAGATAAACCAGTTTGTAA+TGG | + | chr2_3:9400261-9400280 | Msa0277070:CDS | 30.0% | |
| AAGCTTATAGTAAATCTGCA+GGG | + | chr2_3:9400298-9400317 | Msa0277070:CDS | 30.0% | |
| CTATTATAAGGATTTGAAGG+TGG | - | chr2_3:9400333-9400352 | None:intergenic | 30.0% | |
| CCTCTATTATAAGGATTTGA+AGG | - | chr2_3:9400336-9400355 | None:intergenic | 30.0% | |
| CCTTCAAATCCTTATAATAG+AGG | + | chr2_3:9400333-9400352 | Msa0277070:CDS | 30.0% | |
| TTGCTGACATTGAATTTCAT+AGG | + | chr2_3:9400698-9400717 | Msa0277070:intron | 30.0% | |
| TGCTGACATTGAATTTCATA+GGG | + | chr2_3:9400699-9400718 | Msa0277070:intron | 30.0% | |
| ACACTCACATAATTCATTGT+TGG | - | chr2_3:9400840-9400859 | None:intergenic | 30.0% | |
| AATGAATTATGTGAGTGTGT+TGG | + | chr2_3:9400842-9400861 | Msa0277070:intron | 30.0% | |
| GTCCAAAAGTTGTAAAAAAG+TGG | - | chr2_3:9400916-9400935 | None:intergenic | 30.0% | |
| AAAACAATGGAGAGAGAAAA+AGG | - | chr2_3:9400983-9401002 | None:intergenic | 30.0% | |
| TCAACAAAGTTGTCATCAAA+TGG | + | chr2_3:9401034-9401053 | Msa0277070:intron | 30.0% | |
| CAAGAACACAAGATTATTCA+TGG | - | chr2_3:9401237-9401256 | None:intergenic | 30.0% | |
| ! | TTAGTAGTGGAAATGTAGTA+TGG | + | chr2_3:9401596-9401615 | Msa0277070:intron | 30.0% |
| !! | TTTGGTTTGCTTTGATAACT+CGG | - | chr2_3:9401733-9401752 | None:intergenic | 30.0% |
| ! | ATACACTCTTCAGATGATTT+TGG | + | chr2_3:9401853-9401872 | Msa0277070:intron | 30.0% |
| !!! | TTGGTAGTGGAGATTTTATA+TGG | + | chr2_3:9401872-9401891 | Msa0277070:intron | 30.0% |
| TTAGGACAACACAATAACTT+TGG | + | chr2_3:9402000-9402019 | Msa0277070:intron | 30.0% | |
| ACAATGTATAACTCATACAC+GGG | - | chr2_3:9402081-9402100 | None:intergenic | 30.0% | |
| !! | TGTTTGGATAATTTTGGTAG+TGG | + | chr2_3:9402098-9402117 | Msa0277070:intron | 30.0% |
| ! | AAGAGTGTATACTTGATACA+CGG | - | chr2_3:9402315-9402334 | None:intergenic | 30.0% |
| TGTATCAAGTATACACTCTT+CGG | + | chr2_3:9402315-9402334 | Msa0277070:intron | 30.0% | |
| !! | TTGGTAGTGGAAATTGTATA+TGG | + | chr2_3:9402344-9402363 | Msa0277070:intron | 30.0% |
| ! | AAGAGTGTATACTTGATACA+CGG | - | chr2_3:9402315-9402334 | None:intergenic | 30.0% |
| TGTATCAAGTATACACTCTT+CGG | + | chr2_3:9402315-9402334 | Msa0277070:intron | 30.0% | |
| ! | TTGAAGCAAACCAAAGTATT+AGG | + | chr2_3:9402680-9402699 | Msa0277070:intron | 30.0% |
| AGAGTGTATAATTGTTACAC+GGG | - | chr2_3:9402776-9402795 | None:intergenic | 30.0% | |
| ! | GCTTTAATAACTCAGTTTTG+AGG | - | chr2_3:9402896-9402915 | None:intergenic | 30.0% |
| ! | GGACAACACAATAATTTTGA+CGG | + | chr2_3:9402935-9402954 | Msa0277070:intron | 30.0% |
| ! | GGGTTGTTACATATTTTCAA+CGG | - | chr2_3:9403666-9403685 | None:intergenic | 30.0% |
| TTGAAGATTGACAAAAATGG+AGG | - | chr2_3:9403966-9403985 | None:intergenic | 30.0% | |
| AGCTTGAAGATTGACAAAAA+TGG | - | chr2_3:9403969-9403988 | None:intergenic | 30.0% | |
| !! | AAAAGTGTGTCTTTTAAAGG+AGG | - | chr2_3:9404017-9404036 | None:intergenic | 30.0% |
| !!! | ATTTAATTTTTTCAGACCGC+CGG | + | chr2_3:9404054-9404073 | Msa0277070:intron | 30.0% |
| ! | TGGAGTCTGAAATAAGCATA+AGG | + | chr2_3:9400199-9400218 | Msa0277070:CDS | 35.0% |
| CAAAGGAGATACATTTCTGA+AGG | + | chr2_3:9400231-9400250 | Msa0277070:CDS | 35.0% | |
| GATAAACCAGTTTGTAATGG+TGG | + | chr2_3:9400264-9400283 | Msa0277070:CDS | 35.0% | |
| GAAGCTTATAGTAAATCTGC+AGG | + | chr2_3:9400297-9400316 | Msa0277070:CDS | 35.0% | |
| TTATAAGGATTTGAAGGTGG+AGG | - | chr2_3:9400330-9400349 | None:intergenic | 35.0% | |
| ! | GTTCTAAGCATTATCGTTGT+AGG | + | chr2_3:9400358-9400377 | Msa0277070:CDS | 35.0% |
| GCTGAAGTAAATTTGCAGAA+AGG | - | chr2_3:9400644-9400663 | None:intergenic | 35.0% | |
| ! | ATTCAGTTTTCTGCAAATGG+AGG | - | chr2_3:9400679-9400698 | None:intergenic | 35.0% |
| ! | GCAATTCAGTTTTCTGCAAA+TGG | - | chr2_3:9400682-9400701 | None:intergenic | 35.0% |
| !! | TCTTCAGATGATTTTGGTAG+TGG | + | chr2_3:9401859-9401878 | Msa0277070:intron | 35.0% |
| ! | GCAAACCAAAGTATTAGGTT+AGG | + | chr2_3:9401982-9402001 | Msa0277070:intron | 35.0% |
| GTTGTCCTAACCTAATACTT+TGG | - | chr2_3:9401990-9402009 | None:intergenic | 35.0% | |
| !! | TTAATAACTCGGTCGTTTTG+AGG | - | chr2_3:9402202-9402221 | None:intergenic | 35.0% |
| ! | GCAAACCAAAGTATTAGGTT+AGG | + | chr2_3:9401982-9402001 | Msa0277070:intron | 35.0% |
| AGAGTGTATACTTGATACAC+GGG | - | chr2_3:9402314-9402333 | None:intergenic | 35.0% | |
| !! | ATACACTCTTCGGTTGATTT+TGG | + | chr2_3:9402325-9402344 | Msa0277070:intron | 35.0% |
| ! | GCAAACCAAAGTATTAGGTT+AGG | + | chr2_3:9401982-9402001 | Msa0277070:intron | 35.0% |
| GTTGTCCTAACCTAATACTT+TGG | - | chr2_3:9401990-9402009 | None:intergenic | 35.0% | |
| CTTAGACCGTCAAAGTTATT+GGG | - | chr2_3:9402484-9402503 | None:intergenic | 35.0% | |
| ACTTAGACCGTCAAAGTTAT+TGG | - | chr2_3:9402485-9402504 | None:intergenic | 35.0% | |
| AGAGTGTATACTTGATACAC+GGG | - | chr2_3:9402314-9402333 | None:intergenic | 35.0% | |
| !! | ATACACTCTTCGGTTGATTT+TGG | + | chr2_3:9402325-9402344 | Msa0277070:intron | 35.0% |
| ! | GCAAACCAAAGTATTAGGTT+AGG | + | chr2_3:9401982-9402001 | Msa0277070:intron | 35.0% |
| GTTGTCCTAACCTAATACTT+TGG | - | chr2_3:9401990-9402009 | None:intergenic | 35.0% | |
| GGACAACACAATAACTTTGA+CGG | + | chr2_3:9402706-9402725 | Msa0277070:intron | 35.0% | |
| ATACACTCTTCGGATGATTT+CGG | + | chr2_3:9402787-9402806 | Msa0277070:intron | 35.0% | |
| ! | TCGGTTGTGGAAATTTTATC+TGG | + | chr2_3:9402806-9402825 | Msa0277070:intron | 35.0% |
| ! | GCAAACCAAAGTATTAGGAT+AGG | + | chr2_3:9402914-9402933 | Msa0277070:intron | 35.0% |
| GTTGTCCTATCCTAATACTT+TGG | - | chr2_3:9402922-9402941 | None:intergenic | 35.0% | |
| AAACTATCATGCACTTGACA+AGG | - | chr2_3:9403108-9403127 | None:intergenic | 35.0% | |
| TATAAACTGATGAGTGGCAA+TGG | + | chr2_3:9403825-9403844 | Msa0277070:intron | 35.0% | |
| ! | TTTTTCTGTGGCTGTATTAG+TGG | + | chr2_3:9403859-9403878 | Msa0277070:intron | 35.0% |
| GTGGATGAAATAGACAAAAG+AGG | + | chr2_3:9403878-9403897 | Msa0277070:intron | 35.0% | |
| ! | AATGGAGGATTAGTGAATGA+GGG | - | chr2_3:9403951-9403970 | None:intergenic | 35.0% |
| ! | AAATGGAGGATTAGTGAATG+AGG | - | chr2_3:9403952-9403971 | None:intergenic | 35.0% |
| !!! | GCATAAGGTTTTTGGAGCAA+AGG | + | chr2_3:9400214-9400233 | Msa0277070:CDS | 40.0% |
| ! | TAGCGTGTTGGCATATACAA+TGG | + | chr2_3:9400608-9400627 | Msa0277070:intron | 40.0% |
| ! | AGCGTGTTGGCATATACAAT+GGG | + | chr2_3:9400609-9400628 | Msa0277070:intron | 40.0% |
| TGTTGGCATATACAATGGGT+TGG | + | chr2_3:9400613-9400632 | Msa0277070:intron | 40.0% | |
| AGAGAGAAAAAGGAAGAGAG+AGG | - | chr2_3:9400973-9400992 | None:intergenic | 40.0% | |
| GCAGTCCTAACCTAATACTT+TGG | - | chr2_3:9402231-9402250 | None:intergenic | 40.0% | |
| GGACTGCACAATAACTTTGA+CGG | + | chr2_3:9402244-9402263 | Msa0277070:intron | 40.0% | |
| !! | TCTTCGGTTGATTTTGGTAG+TGG | + | chr2_3:9402331-9402350 | Msa0277070:intron | 40.0% |
| GGACAACCCAATAACTTTGA+CGG | + | chr2_3:9402475-9402494 | Msa0277070:intron | 40.0% | |
| !! | TCTTCGGTTGATTTTGGTAG+TGG | + | chr2_3:9402331-9402350 | Msa0277070:intron | 40.0% |
| GATCAATACCACCAAAGTGA+AGG | + | chr2_3:9403760-9403779 | Msa0277070:intron | 40.0% | |
| CACTTTATCCTTCACTTTGG+TGG | - | chr2_3:9403771-9403790 | None:intergenic | 40.0% | |
| CACCAAAGTGAAGGATAAAG+TGG | + | chr2_3:9403769-9403788 | Msa0277070:intron | 40.0% | |
| GACCACTTTATCCTTCACTT+TGG | - | chr2_3:9403774-9403793 | None:intergenic | 40.0% | |
| AACACGCTAGCAAGCTAACT+TGG | - | chr2_3:9400597-9400616 | None:intergenic | 45.0% | |
| !! | AAGTTAGCTTGCTAGCGTGT+TGG | + | chr2_3:9400596-9400615 | Msa0277070:intron | 45.0% |
| TCTTCGGATGATTTCGGTTG+TGG | + | chr2_3:9402793-9402812 | Msa0277070:intron | 45.0% | |
| ! | GAGGATTAGTGAATGAGGGT+TGG | - | chr2_3:9403947-9403966 | None:intergenic | 45.0% |
| CAAATCAACGTCGAAGTTGC+CGG | - | chr2_3:9404095-9404114 | None:intergenic | 45.0% | |
| !!! | TTCTTTATAATTTTTTTTAA+AGG | - | chr2_3:9403393-9403412 | None:intergenic | 5.0% |
| CCTGCACCACCATTACAAAC+TGG | - | chr2_3:9400273-9400292 | None:intergenic | 50.0% | |
| ! | CCAGTTTGTAATGGTGGTGC+AGG | + | chr2_3:9400270-9400289 | Msa0277070:CDS | 50.0% |
| AGAGCTTCACGAGAGAGAGA+AGG | - | chr2_3:9403922-9403941 | None:intergenic | 50.0% | |
| TTTCAGACCGCCGGATTTAG+AGG | + | chr2_3:9404063-9404082 | Msa0277070:intron | 50.0% | |
| GAAATGGCCTCTAAATCCGG+CGG | - | chr2_3:9404073-9404092 | None:intergenic | 50.0% | |
| CCGGAAATGGCCTCTAAATC+CGG | - | chr2_3:9404076-9404095 | None:intergenic | 50.0% | |
| CCGGATTTAGAGGCCATTTC+CGG | + | chr2_3:9404073-9404092 | Msa0277070:CDS | 50.0% | |
| AACGTCGAAGTTGCCGGAAA+TGG | - | chr2_3:9404089-9404108 | None:intergenic | 50.0% | |
| CGATATACCCGTGCTGAGCA+CGG | + | chr2_3:9401424-9401443 | Msa0277070:intron | 55.0% | |
| GATATACCCGTGCTGAGCAC+GGG | + | chr2_3:9401425-9401444 | Msa0277070:intron | 55.0% | |
| ACGACACACATGTCGCCGCG+CGG | - | chr2_3:9401464-9401483 | None:intergenic | 65.0% | |
| GCGCTACCCGTGCTCAGCAC+GGG | - | chr2_3:9401434-9401453 | None:intergenic | 70.0% | |
| CGCGCTACCCGTGCTCAGCA+CGG | - | chr2_3:9401435-9401454 | None:intergenic | 70.0% | |
| CGTGCTGAGCACGGGTAGCG+CGG | + | chr2_3:9401433-9401452 | Msa0277070:intron | 70.0% | |
| ! | GGTAGCGCGGCTGCGCCGCG+CGG | + | chr2_3:9401446-9401465 | Msa0277070:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 9400198 | 9404144 | 9400198 | ID=Msa0277070;Name=Msa0277070 |
| chr2_3 | mRNA | 9400198 | 9404144 | 9400198 | ID=Msa0277070-mRNA-1;Parent=Msa0277070;Name=Msa0277070-mRNA-1;_AED=0.52;_eAED=0.52;_QI=0|0|0|0.5|1|1|2|0|85 |
| chr2_3 | exon | 9400198 | 9400379 | 9400198 | ID=Msa0277070-mRNA-1:exon:4301;Parent=Msa0277070-mRNA-1 |
| chr2_3 | exon | 9404069 | 9404144 | 9404069 | ID=Msa0277070-mRNA-1:exon:4302;Parent=Msa0277070-mRNA-1 |
| chr2_3 | CDS | 9400198 | 9400379 | 9400198 | ID=Msa0277070-mRNA-1:cds;Parent=Msa0277070-mRNA-1 |
| chr2_3 | CDS | 9404069 | 9404144 | 9404069 | ID=Msa0277070-mRNA-1:cds;Parent=Msa0277070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
