Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032210 | XP_013468965.1 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 5.73e-88 | 261 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032210 | sp|O22969|Y2416_ARATH | 73.451 | 113 | 30 | 0 | 12 | 124 | 14 | 126 | 7.68e-55 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022230 | Msa0032210 | 0.801488 | 8.793256e-49 | -8.615850e-47 |
| Msa0028410 | Msa0032210 | 0.815844 | 7.507294e-52 | -8.615850e-47 |
| Msa0028450 | Msa0032210 | 0.843700 | 1.192218e-58 | -8.615850e-47 |
| Msa0032040 | Msa0032210 | 0.805077 | 1.588401e-49 | -8.615850e-47 |
| Msa0032210 | Msa0034800 | 0.803475 | 3.425489e-49 | -8.615850e-47 |
| Msa0032210 | Msa0046090 | 0.805547 | 1.266694e-49 | -8.615850e-47 |
| Msa0032210 | Msa0072910 | 0.802074 | 6.666097e-49 | -8.615850e-47 |
| Msa0032210 | Msa0078080 | 0.802007 | 6.881879e-49 | -8.615850e-47 |
| Msa0032210 | Msa0089410 | 0.832492 | 9.165492e-56 | -8.615850e-47 |
| Msa0032210 | Msa0092750 | 0.856869 | 2.402210e-62 | -8.615850e-47 |
| Msa0032210 | Msa0094240 | 0.812158 | 4.879220e-51 | -8.615850e-47 |
| Msa0032210 | Msa0114960 | 0.839024 | 2.028894e-57 | -8.615850e-47 |
| Msa0032210 | Msa0118250 | 0.800053 | 1.725915e-48 | -8.615850e-47 |
| Msa0032210 | Msa0124070 | 0.834664 | 2.630217e-56 | -8.615850e-47 |
| Msa0032210 | Msa0136520 | 0.834699 | 2.577353e-56 | -8.615850e-47 |
| Msa0032210 | Msa0143360 | 0.831681 | 1.454150e-55 | -8.615850e-47 |
| Msa0032210 | Msa0160470 | 0.803437 | 3.488148e-49 | -8.615850e-47 |
| Msa0032210 | Msa0172530 | 0.967604 | 1.659785e-127 | -8.615850e-47 |
| Msa0032210 | Msa0172580 | 0.963555 | 3.146441e-122 | -8.615850e-47 |
| Msa0032210 | Msa0174800 | 0.833538 | 5.034809e-56 | -8.615850e-47 |
| Msa0032210 | Msa0186380 | 0.834286 | 3.272367e-56 | -8.615850e-47 |
| Msa0032210 | Msa0186750 | 0.827587 | 1.440731e-54 | -8.615850e-47 |
| Msa0032210 | Msa0197600 | 0.827951 | 1.177987e-54 | -8.615850e-47 |
| Msa0032210 | Msa0201910 | 0.821974 | 3.034646e-53 | -8.615850e-47 |
| Msa0032210 | Msa0206600 | 0.814034 | 1.892472e-51 | -8.615850e-47 |
| Msa0032210 | Msa0219140 | 0.834726 | 2.537355e-56 | -8.615850e-47 |
| Msa0032210 | Msa0225050 | 0.818592 | 1.809054e-52 | -8.615850e-47 |
| Msa0032210 | Msa0240290 | 0.818667 | 1.738992e-52 | -8.615850e-47 |
| Msa0032210 | Msa0249670 | 0.836432 | 9.388557e-57 | -8.615850e-47 |
| Msa0032210 | Msa0258960 | 0.832498 | 9.132416e-56 | -8.615850e-47 |
| Msa0032210 | Msa0266120 | 0.830195 | 3.366663e-55 | -8.615850e-47 |
| Msa0032210 | Msa0278080 | 0.829199 | 5.884198e-55 | -8.615850e-47 |
| Msa0032210 | Msa0282880 | 0.807837 | 4.158087e-50 | -8.615850e-47 |
| Msa0032210 | Msa0298180 | 0.808266 | 3.369953e-50 | -8.615850e-47 |
| Msa0032210 | Msa0304040 | 0.811546 | 6.632043e-51 | -8.615850e-47 |
| Msa0032210 | Msa0307490 | 0.811287 | 7.550914e-51 | -8.615850e-47 |
| Msa0032210 | Msa0314980 | 0.806934 | 6.464087e-50 | -8.615850e-47 |
| Msa0032210 | Msa0317630 | 0.822721 | 2.035794e-53 | -8.615850e-47 |
| Msa0032210 | Msa0321200 | 0.802667 | 5.032166e-49 | -8.615850e-47 |
| Msa0032210 | Msa0327870 | 0.829689 | 4.471590e-55 | -8.615850e-47 |
| Msa0032210 | Msa0335860 | 0.802619 | 5.148525e-49 | -8.615850e-47 |
| Msa0032210 | Msa0351600 | 0.834745 | 2.509778e-56 | -8.615850e-47 |
| Msa0032210 | Msa0361040 | 0.809834 | 1.555844e-50 | -8.615850e-47 |
| Msa0032210 | Msa0372550 | 0.806632 | 7.485158e-50 | -8.615850e-47 |
| Msa0032210 | Msa0384570 | 0.818193 | 2.227238e-52 | -8.615850e-47 |
| Msa0032210 | Msa0385870 | 0.844675 | 6.528590e-59 | -8.615850e-47 |
| Msa0032210 | Msa0386390 | 0.817036 | 4.061744e-52 | -8.615850e-47 |
| Msa0032210 | Msa0387120 | 0.820846 | 5.528372e-53 | -8.615850e-47 |
| Msa0032210 | Msa0404330 | 0.808804 | 2.586872e-50 | -8.615850e-47 |
| Msa0032210 | Msa0408490 | 0.803450 | 3.465449e-49 | -8.615850e-47 |
| Msa0032210 | Msa0421100 | 0.802078 | 6.652780e-49 | -8.615850e-47 |
| Msa0032210 | Msa0434630 | 0.804256 | 2.357476e-49 | -8.615850e-47 |
| Msa0032210 | Msa0453310 | 0.818839 | 1.589597e-52 | -8.615850e-47 |
| Msa0032210 | Msa0466040 | 0.801047 | 1.082635e-48 | -8.615850e-47 |
| Msa0032210 | Msa0468050 | -0.811699 | 6.144258e-51 | -8.615850e-47 |
| Msa0032210 | Msa0471080 | 0.807232 | 5.589359e-50 | -8.615850e-47 |
| Msa0032210 | Msa0479790 | 0.818651 | 1.753500e-52 | -8.615850e-47 |
| Msa0032210 | Msa0481580 | 0.809819 | 1.567123e-50 | -8.615850e-47 |
| Msa0032210 | Msa0513500 | 0.806886 | 6.615143e-50 | -8.615850e-47 |
| Msa0032210 | Msa0515420 | 0.815052 | 1.126048e-51 | -8.615850e-47 |
| Msa0032210 | Msa0522510 | 0.806839 | 6.769052e-50 | -8.615850e-47 |
| Msa0032210 | Msa0522830 | 0.804988 | 1.657989e-49 | -8.615850e-47 |
| Msa0032210 | Msa0523400 | 0.827104 | 1.881213e-54 | -8.615850e-47 |
| Msa0032210 | Msa0532910 | 0.845752 | 3.338285e-59 | -8.615850e-47 |
| Msa0032210 | Msa0538100 | 0.810868 | 9.304358e-51 | -8.615850e-47 |
| Msa0032210 | Msa0545910 | 0.812121 | 4.972263e-51 | -8.615850e-47 |
| Msa0032210 | Msa0553940 | 0.832065 | 1.168838e-55 | -8.615850e-47 |
| Msa0032210 | Msa0558220 | 0.803619 | 3.196652e-49 | -8.615850e-47 |
| Msa0032210 | Msa0565930 | 0.827557 | 1.465065e-54 | -8.615850e-47 |
| Msa0032210 | Msa0568810 | 0.811959 | 5.392616e-51 | -8.615850e-47 |
| Msa0032210 | Msa0569630 | 0.808019 | 3.803485e-50 | -8.615850e-47 |
| Msa0032210 | Msa0570310 | 0.805540 | 1.270493e-49 | -8.615850e-47 |
| Msa0032210 | Msa0577140 | 0.816260 | 6.061857e-52 | -8.615850e-47 |
| Msa0032210 | Msa0583810 | 0.809206 | 2.121950e-50 | -8.615850e-47 |
| Msa0032210 | Msa0585770 | 0.809161 | 2.169077e-50 | -8.615850e-47 |
| Msa0032210 | Msa0587060 | 0.853142 | 2.906170e-61 | -8.615850e-47 |
| Msa0032210 | Msa0624890 | 0.829926 | 3.915489e-55 | -8.615850e-47 |
| Msa0032210 | Msa0626890 | 0.816241 | 6.121690e-52 | -8.615850e-47 |
| Msa0032210 | Msa0641970 | 0.803077 | 4.141056e-49 | -8.615850e-47 |
| Msa0032210 | Msa0648410 | 0.843552 | 1.306519e-58 | -8.615850e-47 |
| Msa0032210 | Msa0657820 | 0.809370 | 1.956726e-50 | -8.615850e-47 |
| Msa0032210 | Msa0663580 | 0.803775 | 2.967659e-49 | -8.615850e-47 |
| Msa0032210 | Msa0665010 | 0.834852 | 2.358450e-56 | -8.615850e-47 |
| Msa0032210 | Msa0667710 | 0.844387 | 7.801349e-59 | -8.615850e-47 |
| Msa0032210 | Msa0677590 | 0.807922 | 3.989235e-50 | -8.615850e-47 |
| Msa0032210 | Msa0681040 | 0.815455 | 9.166082e-52 | -8.615850e-47 |
| Msa0032210 | Msa0690920 | 0.845621 | 3.623445e-59 | -8.615850e-47 |
| Msa0032210 | Msa0704750 | 0.828349 | 9.446321e-55 | -8.615850e-47 |
| Msa0032210 | Msa0743630 | 0.820396 | 7.014174e-53 | -8.615850e-47 |
| Msa0032210 | Msa0747900 | 0.817541 | 3.126809e-52 | -8.615850e-47 |
| Msa0032210 | Msa0761930 | 0.805030 | 1.624816e-49 | -8.615850e-47 |
| Msa0032210 | Msa0804930 | 0.804343 | 2.261000e-49 | -8.615850e-47 |
| Msa0032210 | Msa0863780 | 0.812478 | 4.155034e-51 | -8.615850e-47 |
| Msa0032210 | Msa0873070 | 0.801502 | 8.735998e-49 | -8.615850e-47 |
| Msa0032210 | Msa0880060 | 0.811020 | 8.628014e-51 | -8.615850e-47 |
| Msa0032210 | Msa0880370 | 0.806597 | 7.615992e-50 | -8.615850e-47 |
| Msa0032210 | Msa0883880 | 0.821375 | 4.174942e-53 | -8.615850e-47 |
| Msa0032210 | Msa0899080 | 0.803745 | 3.010018e-49 | -8.615850e-47 |
| Msa0032210 | Msa0906310 | 0.801384 | 9.237763e-49 | -8.615850e-47 |
| Msa0032210 | Msa0911440 | 0.807179 | 5.736232e-50 | -8.615850e-47 |
| Msa0032210 | Msa0911490 | 0.801135 | 1.038630e-48 | -8.615850e-47 |
| Msa0032210 | Msa0932040 | 0.810079 | 1.377520e-50 | -8.615850e-47 |
| Msa0032210 | Msa0967260 | 0.828349 | 9.444519e-55 | -8.615850e-47 |
| Msa0032210 | Msa0967920 | 0.803023 | 4.249312e-49 | -8.615850e-47 |
| Msa0032210 | Msa0975460 | 0.817824 | 2.698853e-52 | -8.615850e-47 |
| Msa0032210 | Msa1015020 | 0.808694 | 2.730295e-50 | -8.615850e-47 |
| Msa0032210 | Msa1022660 | 0.800904 | 1.157935e-48 | -8.615850e-47 |
| Msa0032210 | Msa1033460 | 0.811414 | 7.085822e-51 | -8.615850e-47 |
| Msa0032210 | Msa1038040 | 0.812355 | 4.419955e-51 | -8.615850e-47 |
| Msa0032210 | Msa1038420 | 0.803403 | 3.545425e-49 | -8.615850e-47 |
| Msa0032210 | Msa1041620 | 0.826235 | 3.031906e-54 | -8.615850e-47 |
| Msa0032210 | Msa1042380 | 0.831993 | 1.218166e-55 | -8.615850e-47 |
| Msa0032210 | Msa1066980 | 0.800837 | 1.195214e-48 | -8.615850e-47 |
| Msa0032210 | Msa1070930 | 0.802409 | 5.688720e-49 | -8.615850e-47 |
| Msa0032210 | Msa1072640 | 0.813661 | 2.285936e-51 | -8.615850e-47 |
| Msa0032210 | Msa1073140 | 0.820760 | 5.786265e-53 | -8.615850e-47 |
| Msa0032210 | Msa1081650 | 0.823426 | 1.394071e-53 | -8.615850e-47 |
| Msa0032210 | Msa1085370 | 0.819238 | 1.289580e-52 | -8.615850e-47 |
| Msa0032210 | Msa1103610 | 0.800396 | 1.470051e-48 | -8.615850e-47 |
| Msa0032210 | Msa1113780 | 0.801342 | 9.421328e-49 | -8.615850e-47 |
| Msa0032210 | Msa1125100 | 0.832956 | 7.032189e-56 | -8.615850e-47 |
| Msa0032210 | Msa1125150 | 0.833923 | 4.035779e-56 | -8.615850e-47 |
| Msa0032210 | Msa1127530 | 0.801955 | 7.053039e-49 | -8.615850e-47 |
| Msa0032210 | Msa1144470 | 0.801884 | 7.293413e-49 | -8.615850e-47 |
| Msa0032210 | Msa1147190 | 0.808857 | 2.520149e-50 | -8.615850e-47 |
| Msa0032210 | Msa1147870 | 0.808522 | 2.971693e-50 | -8.615850e-47 |
| Msa0032210 | Msa1160470 | 0.824720 | 6.926185e-54 | -8.615850e-47 |
| Msa0032210 | Msa1166520 | 0.818740 | 1.674162e-52 | -8.615850e-47 |
| Msa0032210 | Msa1185040 | 0.822502 | 2.289633e-53 | -8.615850e-47 |
| Msa0032210 | Msa1186010 | 0.807601 | 4.668052e-50 | -8.615850e-47 |
| Msa0032210 | Msa1198280 | 0.814368 | 1.596138e-51 | -8.615850e-47 |
| Msa0032210 | Msa1199690 | 0.839884 | 1.212976e-57 | -8.615850e-47 |
| Msa0032210 | Msa1203840 | 0.820678 | 6.040967e-53 | -8.615850e-47 |
| Msa0032210 | Msa1203860 | 0.809010 | 2.337176e-50 | -8.615850e-47 |
| Msa0032210 | Msa1209650 | 0.817499 | 3.195647e-52 | -8.615850e-47 |
| Msa0032210 | Msa1229880 | 0.800154 | 1.646207e-48 | -8.615850e-47 |
| Msa0032210 | Msa1236090 | 0.806822 | 6.824323e-50 | -8.615850e-47 |
| Msa0032210 | Msa1240240 | 0.800226 | 1.591433e-48 | -8.615850e-47 |
| Msa0032210 | Msa1252220 | 0.811781 | 5.895418e-51 | -8.615850e-47 |
| Msa0032210 | Msa1260240 | 0.802925 | 4.450397e-49 | -8.615850e-47 |
| Msa0032210 | Msa1267800 | 0.823480 | 1.354069e-53 | -8.615850e-47 |
| Msa0032210 | Msa1279240 | 0.847534 | 1.088444e-59 | -8.615850e-47 |
| Msa0032210 | Msa1303130 | 0.810067 | 1.385539e-50 | -8.615850e-47 |
| Msa0032210 | Msa1319710 | 0.809672 | 1.685524e-50 | -8.615850e-47 |
| Msa0032210 | Msa1330910 | 0.814431 | 1.546294e-51 | -8.615850e-47 |
| Msa0032210 | Msa1356500 | 0.806044 | 9.956518e-50 | -8.615850e-47 |
| Msa0032210 | Msa1357760 | 0.810898 | 9.169588e-51 | -8.615850e-47 |
| Msa0032210 | Msa1361090 | 0.824646 | 7.211685e-54 | -8.615850e-47 |
| Msa0032210 | Msa1364850 | 0.802549 | 5.323097e-49 | -8.615850e-47 |
| Msa0032210 | Msa1370830 | 0.842351 | 2.726918e-58 | -8.615850e-47 |
| Msa0032210 | Msa1374610 | 0.804775 | 1.837516e-49 | -8.615850e-47 |
| Msa0032210 | Msa1384980 | 0.802099 | 6.588983e-49 | -8.615850e-47 |
| Msa0032210 | Msa1385940 | 0.800804 | 1.213687e-48 | -8.615850e-47 |
| Msa0032210 | Msa1391600 | 0.808851 | 2.527744e-50 | -8.615850e-47 |
| Msa0032210 | Msa1397550 | 0.832729 | 8.007067e-56 | -8.615850e-47 |
| Msa0032210 | Msa1420630 | 0.844924 | 5.592546e-59 | -8.615850e-47 |
| Msa0032210 | Msa1425570 | 0.844579 | 6.926378e-59 | -8.615850e-47 |
| Msa0032210 | Msa1435690 | 0.800821 | 1.204098e-48 | -8.615850e-47 |
| Msa0032210 | Msa1451780 | 0.815585 | 8.572087e-52 | -8.615850e-47 |
| Msa0032210 | Msa1458250 | 0.987125 | 3.825703e-169 | -8.615850e-47 |
| Msa0032210 | Msa1466170 | 0.801827 | 7.494483e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032210 | MtrunA17_Chr1g0190531 | 99.231 | 130 | 1 | 0 | 1 | 130 | 1 | 130 | 5.27e-92 | 261 |
| Msa0032210 | MtrunA17_Chr2g0332861 | 82.000 | 100 | 18 | 0 | 13 | 112 | 19 | 118 | 2.19e-56 | 172 |
| Msa0032210 | MtrunA17_Chr4g0003571 | 75.455 | 110 | 22 | 1 | 8 | 112 | 4 | 113 | 1.15e-54 | 167 |
| Msa0032210 | MtrunA17_Chr5g0395021 | 57.143 | 91 | 39 | 0 | 20 | 110 | 41 | 131 | 1.37e-29 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0032210 | AT3G04620.1 | 89.109 | 101 | 11 | 0 | 14 | 114 | 33 | 133 | 3.74e-63 | 190 |
| Msa0032210 | AT2G34160.1 | 73.451 | 113 | 30 | 0 | 12 | 124 | 14 | 126 | 7.80e-56 | 171 |
| Msa0032210 | AT1G29250.1 | 77.228 | 101 | 23 | 0 | 12 | 112 | 14 | 114 | 4.53e-53 | 163 |
Find 47 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGAATTCTGTTCTTCTTA+TGG | 0.143902 | 1_1:+59197188 | None:intergenic |
| AAACATCATATATTATAATA+TGG | 0.229375 | 1_1:-59195858 | Msa0032210:three_prime_UTR |
| ATTCATGGACGTAAGTAAAT+AGG | 0.250702 | 1_1:-59195789 | Msa0032210:three_prime_UTR |
| CTGAATTCTGTTCTTCTTAT+GGG | 0.253699 | 1_1:+59197189 | None:intergenic |
| TCAGTAGCTGCTTCTGATTC+AGG | 0.262383 | 1_1:+59195895 | None:intergenic |
| TCATTTGCAGTTTCAGTTAC+AGG | 0.276939 | 1_1:+59197214 | None:intergenic |
| GTCAGTGCCTTGTTTATATA+AGG | 0.295046 | 1_1:+59197300 | None:intergenic |
| GTAACGGTAAAGTAGTTTAA+TGG | 0.315122 | 1_1:+59197277 | None:intergenic |
| TTCATGGACGTAAGTAAATA+GGG | 0.330600 | 1_1:-59195788 | Msa0032210:three_prime_UTR |
| CCATAAGAAGAACAGAATTC+AGG | 0.338440 | 1_1:-59197188 | Msa0032210:CDS |
| GTAAAAGAAAAGTGGTTTCT+TGG | 0.349846 | 1_1:+59197156 | None:intergenic |
| AATACAATCTAAAGTTATAA+TGG | 0.350985 | 1_1:+59195703 | None:intergenic |
| GAGGTTGAGCTTTCTGCTCT+TGG | 0.357617 | 1_1:-59196737 | Msa0032210:CDS |
| GAGCTTTCTGCTCTTGGAAT+GGG | 0.372225 | 1_1:-59196731 | Msa0032210:intron |
| GAAAAGTGGTTTCTTGGTGT+TGG | 0.373099 | 1_1:+59197162 | None:intergenic |
| TTCCACCTCATAATTGAATC+AGG | 0.379232 | 1_1:+59195594 | None:intergenic |
| TAACGGTAAAGTAGTTTAAT+GGG | 0.430336 | 1_1:+59197278 | None:intergenic |
| TGAGCTTTCTGCTCTTGGAA+TGG | 0.445801 | 1_1:-59196732 | Msa0032210:CDS |
| TTTGTAGATTGAAATTGTGC+TGG | 0.464511 | 1_1:-59195968 | Msa0032210:intron |
| AACATCATATATTATAATAT+GGG | 0.471119 | 1_1:-59195857 | Msa0032210:three_prime_UTR |
| TCCATTGTTCTTCAAAATCT+CGG | 0.472867 | 1_1:+59196260 | None:intergenic |
| AATGAGGGGATCAAAGTTGT+AGG | 0.482695 | 1_1:-59195736 | Msa0032210:three_prime_UTR |
| TTCAGTTACAGGTGCAGCTA+TGG | 0.492084 | 1_1:+59197225 | None:intergenic |
| TCAGGTGTGGTGGTGTCAGC+AGG | 0.492551 | 1_1:+59195913 | None:intergenic |
| CAAAGGTCGGCTTGTGCAGA+AGG | 0.493622 | 1_1:-59196095 | Msa0032210:CDS |
| ACCTCATAATTGAATCAGGT+TGG | 0.502585 | 1_1:+59195598 | None:intergenic |
| CCTCATAATTGAATCAGGTT+GGG | 0.517241 | 1_1:+59195599 | None:intergenic |
| GACATCTACAGTTGGCATGA+AGG | 0.541089 | 1_1:-59196125 | Msa0032210:CDS |
| CGTGGAGTTCAATGCAATGA+GGG | 0.553178 | 1_1:-59195751 | Msa0032210:three_prime_UTR |
| TGAGAAGTTTGACAATATGA+TGG | 0.556772 | 1_1:-59195938 | Msa0032210:CDS |
| TGCTTCTGATTCAGGTGTGG+TGG | 0.564894 | 1_1:+59195903 | None:intergenic |
| GAAGTATTGACATCTACAGT+TGG | 0.573871 | 1_1:-59196133 | Msa0032210:CDS |
| TTGTAGATTGAAATTGTGCT+GGG | 0.576481 | 1_1:-59195967 | Msa0032210:intron |
| AGATTGACGTAAAAGAAAAG+TGG | 0.580806 | 1_1:+59197148 | None:intergenic |
| GTAATCCTCTGTAACTGTAA+CGG | 0.592251 | 1_1:+59197261 | None:intergenic |
| AGCTGCTTCTGATTCAGGTG+TGG | 0.603045 | 1_1:+59195900 | None:intergenic |
| CATGGACGTAAGTAAATAGG+GGG | 0.610176 | 1_1:-59195786 | Msa0032210:three_prime_UTR |
| CTTTACCGTTACAGTTACAG+AGG | 0.610243 | 1_1:-59197266 | Msa0032210:five_prime_UTR |
| TCATGGACGTAAGTAAATAG+GGG | 0.629086 | 1_1:-59195787 | Msa0032210:three_prime_UTR |
| TCGTGGAGTTCAATGCAATG+AGG | 0.638219 | 1_1:-59195752 | Msa0032210:three_prime_UTR |
| TGAAGGATGAGAACAAAGGT+CGG | 0.640401 | 1_1:-59196108 | Msa0032210:CDS |
| TCGGCTTGTGCAGAAGGCAA+AGG | 0.641693 | 1_1:-59196089 | Msa0032210:intron |
| ACTCATGCCTTATATAAACA+AGG | 0.680741 | 1_1:-59197307 | Msa0032210:five_prime_UTR |
| GTGGAGTTCAATGCAATGAG+GGG | 0.682802 | 1_1:-59195750 | Msa0032210:three_prime_UTR |
| ATACATTCAGCAGCACAATG+AGG | 0.717661 | 1_1:-59196756 | Msa0032210:CDS |
| GGCATGAAGGATGAGAACAA+AGG | 0.737049 | 1_1:-59196112 | Msa0032210:CDS |
| ATGGACGTAAGTAAATAGGG+GGG | 0.764770 | 1_1:-59195785 | Msa0032210:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACATCATATATTATAATA+TGG | - | chr1_1:59197056-59197075 | Msa0032210:intron | 10.0% |
| !! | AACATCATATATTATAATAT+GGG | - | chr1_1:59197057-59197076 | Msa0032210:intron | 10.0% |
| !! | AAACATCATATATTATAATA+TGG | - | chr1_1:59197056-59197075 | Msa0032210:intron | 10.0% |
| !! | AACATCATATATTATAATAT+GGG | - | chr1_1:59197057-59197076 | Msa0032210:intron | 10.0% |
| !! | ATTTATTTACATTACTTTGA+TGG | - | chr1_1:59196041-59196060 | Msa0032210:intron | 15.0% |
| !! | TTAAAACAATGTAATGTATA+AGG | - | chr1_1:59196442-59196461 | Msa0032210:intron | 15.0% |
| !!! | AATACAATCTAAAGTTATAA+TGG | + | chr1_1:59197214-59197233 | None:intergenic | 15.0% |
| !! | ATTTATTTACATTACTTTGA+TGG | - | chr1_1:59196041-59196060 | Msa0032210:intron | 15.0% |
| !! | TTAAAACAATGTAATGTATA+AGG | - | chr1_1:59196442-59196461 | Msa0032210:intron | 15.0% |
| !!! | AATACAATCTAAAGTTATAA+TGG | + | chr1_1:59197214-59197233 | None:intergenic | 15.0% |
| !! | AATGATCATTAGATTAAGAT+CGG | - | chr1_1:59195853-59195872 | Msa0032210:three_prime_UTR | 20.0% |
| !! | GCTATAGAAAAGAAAAAAAA+TGG | - | chr1_1:59196087-59196106 | Msa0032210:intron | 20.0% |
| !! | CAAATTAAAGACAAAAAGAA+GGG | + | chr1_1:59196235-59196254 | None:intergenic | 20.0% |
| !! | AGAAGAATCCAATTAATAAT+CGG | + | chr1_1:59196263-59196282 | None:intergenic | 20.0% |
| !!! | ATTTTAATGTTAGTTGTTTC+TGG | - | chr1_1:59196340-59196359 | Msa0032210:intron | 20.0% |
| !! | AAAAAGAAAAACAGAAAATG+AGG | - | chr1_1:59196468-59196487 | Msa0032210:intron | 20.0% |
| !! | CTAATCAATTAATGAATGTT+TGG | - | chr1_1:59196750-59196769 | Msa0032210:CDS | 20.0% |
| !! | TGAAAGAAAAAAGACATAAT+TGG | + | chr1_1:59197290-59197309 | None:intergenic | 20.0% |
| !!! | ATTATGTCTTTTTTCTTTCA+AGG | - | chr1_1:59197290-59197309 | Msa0032210:five_prime_UTR | 20.0% |
| !! | AATGATCATTAGATTAAGAT+CGG | - | chr1_1:59195853-59195872 | Msa0032210:three_prime_UTR | 20.0% |
| !! | GCTATAGAAAAGAAAAAAAA+TGG | - | chr1_1:59196087-59196106 | Msa0032210:intron | 20.0% |
| !! | CAAATTAAAGACAAAAAGAA+GGG | + | chr1_1:59196235-59196254 | None:intergenic | 20.0% |
| !! | AGAAGAATCCAATTAATAAT+CGG | + | chr1_1:59196263-59196282 | None:intergenic | 20.0% |
| !!! | ATTTTAATGTTAGTTGTTTC+TGG | - | chr1_1:59196340-59196359 | Msa0032210:intron | 20.0% |
| !! | AAAAAGAAAAACAGAAAATG+AGG | - | chr1_1:59196468-59196487 | Msa0032210:intron | 20.0% |
| !! | CTAATCAATTAATGAATGTT+TGG | - | chr1_1:59196750-59196769 | Msa0032210:CDS | 20.0% |
| !! | TGAAAGAAAAAAGACATAAT+TGG | + | chr1_1:59197290-59197309 | None:intergenic | 20.0% |
| !!! | ATTATGTCTTTTTTCTTTCA+AGG | - | chr1_1:59197290-59197309 | Msa0032210:five_prime_UTR | 20.0% |
| ! | TAACGGTAAAGTAGTTTAAT+GGG | + | chr1_1:59195639-59195658 | None:intergenic | 25.0% |
| !! | ATGTAATGTCACTTGATAAT+CGG | - | chr1_1:59195799-59195818 | Msa0032210:three_prime_UTR | 25.0% |
| !! | GACTTTCTTAATTTTAAGCA+CGG | - | chr1_1:59195875-59195894 | Msa0032210:exon | 25.0% |
| ! | TTCAAATTGTGATCAACTAA+TGG | - | chr1_1:59196065-59196084 | Msa0032210:intron | 25.0% |
| ! | AGAAAAGAAAAAAAATGGCT+AGG | - | chr1_1:59196092-59196111 | Msa0032210:CDS | 25.0% |
| !! | ACAAAAAGAAGGGAAATTTT+AGG | + | chr1_1:59196225-59196244 | None:intergenic | 25.0% |
| ! | GCAAATTAAAGACAAAAAGA+AGG | + | chr1_1:59196236-59196255 | None:intergenic | 25.0% |
| !!! | TTACATTGACTTAACTATCA+AGG | - | chr1_1:59196371-59196390 | Msa0032210:intron | 25.0% |
| !!! | TCAAGGCATTATTTTTACTA+TGG | - | chr1_1:59196388-59196407 | Msa0032210:intron | 25.0% |
| !!! | TATTTTTACTATGGTGTGTA+AGG | - | chr1_1:59196397-59196416 | Msa0032210:intron | 25.0% |
| !! | TACTTTTGTTCAATTGATAG+AGG | + | chr1_1:59196519-59196538 | None:intergenic | 25.0% |
| ! | TAGAGTAAGAATATGAAACT+AGG | + | chr1_1:59196558-59196577 | None:intergenic | 25.0% |
| ! | ACAAAAATGTTGACATGAAT+TGG | - | chr1_1:59196602-59196621 | Msa0032210:intron | 25.0% |
| ! | TATAACTCTCATTCATATGA+TGG | - | chr1_1:59196717-59196736 | Msa0032210:intron | 25.0% |
| !! | TGTTGTAATTTTTGCATTCA+TGG | - | chr1_1:59197110-59197129 | Msa0032210:intron | 25.0% |
| ! | TAACGGTAAAGTAGTTTAAT+GGG | + | chr1_1:59195639-59195658 | None:intergenic | 25.0% |
| !! | ATGTAATGTCACTTGATAAT+CGG | - | chr1_1:59195799-59195818 | Msa0032210:three_prime_UTR | 25.0% |
| !! | GACTTTCTTAATTTTAAGCA+CGG | - | chr1_1:59195875-59195894 | Msa0032210:exon | 25.0% |
| ! | TTCAAATTGTGATCAACTAA+TGG | - | chr1_1:59196065-59196084 | Msa0032210:intron | 25.0% |
| ! | AGAAAAGAAAAAAAATGGCT+AGG | - | chr1_1:59196092-59196111 | Msa0032210:CDS | 25.0% |
| !! | ACAAAAAGAAGGGAAATTTT+AGG | + | chr1_1:59196225-59196244 | None:intergenic | 25.0% |
| ! | GCAAATTAAAGACAAAAAGA+AGG | + | chr1_1:59196236-59196255 | None:intergenic | 25.0% |
| !!! | TTACATTGACTTAACTATCA+AGG | - | chr1_1:59196371-59196390 | Msa0032210:intron | 25.0% |
| !!! | TCAAGGCATTATTTTTACTA+TGG | - | chr1_1:59196388-59196407 | Msa0032210:intron | 25.0% |
| !!! | TATTTTTACTATGGTGTGTA+AGG | - | chr1_1:59196397-59196416 | Msa0032210:intron | 25.0% |
| !! | TACTTTTGTTCAATTGATAG+AGG | + | chr1_1:59196519-59196538 | None:intergenic | 25.0% |
| ! | TAGAGTAAGAATATGAAACT+AGG | + | chr1_1:59196558-59196577 | None:intergenic | 25.0% |
| ! | ACAAAAATGTTGACATGAAT+TGG | - | chr1_1:59196602-59196621 | Msa0032210:intron | 25.0% |
| ! | TATAACTCTCATTCATATGA+TGG | - | chr1_1:59196717-59196736 | Msa0032210:intron | 25.0% |
| !! | TGTTGTAATTTTTGCATTCA+TGG | - | chr1_1:59197110-59197129 | Msa0032210:intron | 25.0% |
| GTAACGGTAAAGTAGTTTAA+TGG | + | chr1_1:59195640-59195659 | None:intergenic | 30.0% | |
| CTGAATTCTGTTCTTCTTAT+GGG | + | chr1_1:59195728-59195747 | None:intergenic | 30.0% | |
| GTAAAAGAAAAGTGGTTTCT+TGG | + | chr1_1:59195761-59195780 | None:intergenic | 30.0% | |
| AGATTGACGTAAAAGAAAAG+TGG | + | chr1_1:59195769-59195788 | None:intergenic | 30.0% | |
| ! | TGTAATGTCACTTGATAATC+GGG | - | chr1_1:59195800-59195819 | Msa0032210:three_prime_UTR | 30.0% |
| AATGATCATTGATGTAGTGA+CGG | + | chr1_1:59195843-59195862 | None:intergenic | 30.0% | |
| ACTGTTTAATCTGAATTCAG+CGG | - | chr1_1:59195942-59195961 | Msa0032210:CDS | 30.0% | |
| TTGCACAACCGATTATTAAT+TGG | - | chr1_1:59196252-59196271 | Msa0032210:CDS | 30.0% | |
| AATTGATAGAGGATATCTGT+TGG | + | chr1_1:59196508-59196527 | None:intergenic | 30.0% | |
| TCCATTGTTCTTCAAAATCT+CGG | + | chr1_1:59196657-59196676 | None:intergenic | 30.0% | |
| ! | TGAATTCTCTTCATTTTCGT+CGG | + | chr1_1:59196858-59196877 | None:intergenic | 30.0% |
| CAAAATACCAAGAAAAGTCT+AGG | + | chr1_1:59196930-59196949 | None:intergenic | 30.0% | |
| TTTGTAGATTGAAATTGTGC+TGG | - | chr1_1:59196946-59196965 | Msa0032210:intron | 30.0% | |
| TTGTAGATTGAAATTGTGCT+GGG | - | chr1_1:59196947-59196966 | Msa0032210:intron | 30.0% | |
| TGAGAAGTTTGACAATATGA+TGG | - | chr1_1:59196976-59196995 | Msa0032210:intron | 30.0% | |
| ATTCATGGACGTAAGTAAAT+AGG | - | chr1_1:59197125-59197144 | Msa0032210:intron | 30.0% | |
| TTCATGGACGTAAGTAAATA+GGG | - | chr1_1:59197126-59197145 | Msa0032210:intron | 30.0% | |
| GTAACGGTAAAGTAGTTTAA+TGG | + | chr1_1:59195640-59195659 | None:intergenic | 30.0% | |
| CTGAATTCTGTTCTTCTTAT+GGG | + | chr1_1:59195728-59195747 | None:intergenic | 30.0% | |
| GTAAAAGAAAAGTGGTTTCT+TGG | + | chr1_1:59195761-59195780 | None:intergenic | 30.0% | |
| AGATTGACGTAAAAGAAAAG+TGG | + | chr1_1:59195769-59195788 | None:intergenic | 30.0% | |
| ! | TGTAATGTCACTTGATAATC+GGG | - | chr1_1:59195800-59195819 | Msa0032210:three_prime_UTR | 30.0% |
| AATGATCATTGATGTAGTGA+CGG | + | chr1_1:59195843-59195862 | None:intergenic | 30.0% | |
| ACTGTTTAATCTGAATTCAG+CGG | - | chr1_1:59195942-59195961 | Msa0032210:CDS | 30.0% | |
| TTGCACAACCGATTATTAAT+TGG | - | chr1_1:59196252-59196271 | Msa0032210:CDS | 30.0% | |
| AATTGATAGAGGATATCTGT+TGG | + | chr1_1:59196508-59196527 | None:intergenic | 30.0% | |
| TCCATTGTTCTTCAAAATCT+CGG | + | chr1_1:59196657-59196676 | None:intergenic | 30.0% | |
| ! | TGAATTCTCTTCATTTTCGT+CGG | + | chr1_1:59196858-59196877 | None:intergenic | 30.0% |
| CAAAATACCAAGAAAAGTCT+AGG | + | chr1_1:59196930-59196949 | None:intergenic | 30.0% | |
| TTTGTAGATTGAAATTGTGC+TGG | - | chr1_1:59196946-59196965 | Msa0032210:intron | 30.0% | |
| TTGTAGATTGAAATTGTGCT+GGG | - | chr1_1:59196947-59196966 | Msa0032210:intron | 30.0% | |
| TGAGAAGTTTGACAATATGA+TGG | - | chr1_1:59196976-59196995 | Msa0032210:intron | 30.0% | |
| ATTCATGGACGTAAGTAAAT+AGG | - | chr1_1:59197125-59197144 | Msa0032210:intron | 30.0% | |
| TTCATGGACGTAAGTAAATA+GGG | - | chr1_1:59197126-59197145 | Msa0032210:intron | 30.0% | |
| !! | GTCAGTGCCTTGTTTATATA+AGG | + | chr1_1:59195617-59195636 | None:intergenic | 35.0% |
| GTAATCCTCTGTAACTGTAA+CGG | + | chr1_1:59195656-59195675 | None:intergenic | 35.0% | |
| TCATTTGCAGTTTCAGTTAC+AGG | + | chr1_1:59195703-59195722 | None:intergenic | 35.0% | |
| CCTGAATTCTGTTCTTCTTA+TGG | + | chr1_1:59195729-59195748 | None:intergenic | 35.0% | |
| CCATAAGAAGAACAGAATTC+AGG | - | chr1_1:59195726-59195745 | Msa0032210:three_prime_UTR | 35.0% | |
| CAAGTGACATTACATTACCT+TGG | + | chr1_1:59195794-59195813 | None:intergenic | 35.0% | |
| TGAATGTATCTCTGCATCAA+AGG | + | chr1_1:59196147-59196166 | None:intergenic | 35.0% | |
| TATGAAACTAGGAACAGATG+AGG | + | chr1_1:59196547-59196566 | None:intergenic | 35.0% | |
| !! | GAAGTATTGACATCTACAGT+TGG | - | chr1_1:59196781-59196800 | Msa0032210:intron | 35.0% |
| ! | TCTTAAGCCTAGACTTTTCT+TGG | - | chr1_1:59196920-59196939 | Msa0032210:intron | 35.0% |
| TCATGGACGTAAGTAAATAG+GGG | - | chr1_1:59197127-59197146 | Msa0032210:intron | 35.0% | |
| !! | GTCAGTGCCTTGTTTATATA+AGG | + | chr1_1:59195617-59195636 | None:intergenic | 35.0% |
| GTAATCCTCTGTAACTGTAA+CGG | + | chr1_1:59195656-59195675 | None:intergenic | 35.0% | |
| TCATTTGCAGTTTCAGTTAC+AGG | + | chr1_1:59195703-59195722 | None:intergenic | 35.0% | |
| CCTGAATTCTGTTCTTCTTA+TGG | + | chr1_1:59195729-59195748 | None:intergenic | 35.0% | |
| CCATAAGAAGAACAGAATTC+AGG | - | chr1_1:59195726-59195745 | Msa0032210:three_prime_UTR | 35.0% | |
| CAAGTGACATTACATTACCT+TGG | + | chr1_1:59195794-59195813 | None:intergenic | 35.0% | |
| TGAATGTATCTCTGCATCAA+AGG | + | chr1_1:59196147-59196166 | None:intergenic | 35.0% | |
| TATGAAACTAGGAACAGATG+AGG | + | chr1_1:59196547-59196566 | None:intergenic | 35.0% | |
| !! | GAAGTATTGACATCTACAGT+TGG | - | chr1_1:59196781-59196800 | Msa0032210:intron | 35.0% |
| ! | TCTTAAGCCTAGACTTTTCT+TGG | - | chr1_1:59196920-59196939 | Msa0032210:intron | 35.0% |
| TCATGGACGTAAGTAAATAG+GGG | - | chr1_1:59197127-59197146 | Msa0032210:intron | 35.0% | |
| CTTTACCGTTACAGTTACAG+AGG | - | chr1_1:59195648-59195667 | Msa0032210:three_prime_UTR | 40.0% | |
| ! | GAAAAGTGGTTTCTTGGTGT+TGG | + | chr1_1:59195755-59195774 | None:intergenic | 40.0% |
| ! | CTTGATAATCGGGATACCTT+TGG | - | chr1_1:59195810-59195829 | Msa0032210:three_prime_UTR | 40.0% |
| TAGTGACGGTATGAATCCAA+AGG | + | chr1_1:59195829-59195848 | None:intergenic | 40.0% | |
| CATTCATGTAGTCGATGCAT+TGG | + | chr1_1:59195971-59195990 | None:intergenic | 40.0% | |
| ATACATTCAGCAGCACAATG+AGG | - | chr1_1:59196158-59196177 | Msa0032210:intron | 40.0% | |
| !! | GCCGAGATTTTGAAGAACAA+TGG | - | chr1_1:59196653-59196672 | Msa0032210:intron | 40.0% |
| ACTTGCAACTGAGAAGAGTA+AGG | - | chr1_1:59196676-59196695 | Msa0032210:intron | 40.0% | |
| TGAAGGATGAGAACAAAGGT+CGG | - | chr1_1:59196806-59196825 | Msa0032210:intron | 40.0% | |
| CATGGACGTAAGTAAATAGG+GGG | - | chr1_1:59197128-59197147 | Msa0032210:intron | 40.0% | |
| ATGGACGTAAGTAAATAGGG+GGG | - | chr1_1:59197129-59197148 | Msa0032210:intron | 40.0% | |
| AGTAAATAGGGGGGTAGAAA+AGG | - | chr1_1:59197138-59197157 | Msa0032210:intron | 40.0% | |
| GTAAATAGGGGGGTAGAAAA+GGG | - | chr1_1:59197139-59197158 | Msa0032210:intron | 40.0% | |
| AATGAGGGGATCAAAGTTGT+AGG | - | chr1_1:59197178-59197197 | Msa0032210:CDS | 40.0% | |
| CTTTACCGTTACAGTTACAG+AGG | - | chr1_1:59195648-59195667 | Msa0032210:three_prime_UTR | 40.0% | |
| ! | GAAAAGTGGTTTCTTGGTGT+TGG | + | chr1_1:59195755-59195774 | None:intergenic | 40.0% |
| ! | CTTGATAATCGGGATACCTT+TGG | - | chr1_1:59195810-59195829 | Msa0032210:three_prime_UTR | 40.0% |
| TAGTGACGGTATGAATCCAA+AGG | + | chr1_1:59195829-59195848 | None:intergenic | 40.0% | |
| CATTCATGTAGTCGATGCAT+TGG | + | chr1_1:59195971-59195990 | None:intergenic | 40.0% | |
| ATACATTCAGCAGCACAATG+AGG | - | chr1_1:59196158-59196177 | Msa0032210:intron | 40.0% | |
| !! | GCCGAGATTTTGAAGAACAA+TGG | - | chr1_1:59196653-59196672 | Msa0032210:intron | 40.0% |
| ACTTGCAACTGAGAAGAGTA+AGG | - | chr1_1:59196676-59196695 | Msa0032210:intron | 40.0% | |
| TGAAGGATGAGAACAAAGGT+CGG | - | chr1_1:59196806-59196825 | Msa0032210:intron | 40.0% | |
| CATGGACGTAAGTAAATAGG+GGG | - | chr1_1:59197128-59197147 | Msa0032210:intron | 40.0% | |
| ATGGACGTAAGTAAATAGGG+GGG | - | chr1_1:59197129-59197148 | Msa0032210:intron | 40.0% | |
| AGTAAATAGGGGGGTAGAAA+AGG | - | chr1_1:59197138-59197157 | Msa0032210:intron | 40.0% | |
| GTAAATAGGGGGGTAGAAAA+GGG | - | chr1_1:59197139-59197158 | Msa0032210:intron | 40.0% | |
| AATGAGGGGATCAAAGTTGT+AGG | - | chr1_1:59197178-59197197 | Msa0032210:CDS | 40.0% | |
| TTCAGTTACAGGTGCAGCTA+TGG | + | chr1_1:59195692-59195711 | None:intergenic | 45.0% | |
| ! | CTTTTACGTCAATCTCGCCA+AGG | - | chr1_1:59195774-59195793 | Msa0032210:three_prime_UTR | 45.0% |
| TGAGCTTTCTGCTCTTGGAA+TGG | - | chr1_1:59196182-59196201 | Msa0032210:intron | 45.0% | |
| GAGCTTTCTGCTCTTGGAAT+GGG | - | chr1_1:59196183-59196202 | Msa0032210:intron | 45.0% | |
| GACATCTACAGTTGGCATGA+AGG | - | chr1_1:59196789-59196808 | Msa0032210:intron | 45.0% | |
| GGCATGAAGGATGAGAACAA+AGG | - | chr1_1:59196802-59196821 | Msa0032210:intron | 45.0% | |
| TCAGTAGCTGCTTCTGATTC+AGG | + | chr1_1:59197022-59197041 | None:intergenic | 45.0% | |
| TCGTGGAGTTCAATGCAATG+AGG | - | chr1_1:59197162-59197181 | Msa0032210:CDS | 45.0% | |
| CGTGGAGTTCAATGCAATGA+GGG | - | chr1_1:59197163-59197182 | Msa0032210:CDS | 45.0% | |
| GTGGAGTTCAATGCAATGAG+GGG | - | chr1_1:59197164-59197183 | Msa0032210:CDS | 45.0% | |
| TTCAGTTACAGGTGCAGCTA+TGG | + | chr1_1:59195692-59195711 | None:intergenic | 45.0% | |
| ! | CTTTTACGTCAATCTCGCCA+AGG | - | chr1_1:59195774-59195793 | Msa0032210:three_prime_UTR | 45.0% |
| TGAGCTTTCTGCTCTTGGAA+TGG | - | chr1_1:59196182-59196201 | Msa0032210:intron | 45.0% | |
| GAGCTTTCTGCTCTTGGAAT+GGG | - | chr1_1:59196183-59196202 | Msa0032210:intron | 45.0% | |
| GACATCTACAGTTGGCATGA+AGG | - | chr1_1:59196789-59196808 | Msa0032210:intron | 45.0% | |
| GGCATGAAGGATGAGAACAA+AGG | - | chr1_1:59196802-59196821 | Msa0032210:intron | 45.0% | |
| TCAGTAGCTGCTTCTGATTC+AGG | + | chr1_1:59197022-59197041 | None:intergenic | 45.0% | |
| TCGTGGAGTTCAATGCAATG+AGG | - | chr1_1:59197162-59197181 | Msa0032210:CDS | 45.0% | |
| CGTGGAGTTCAATGCAATGA+GGG | - | chr1_1:59197163-59197182 | Msa0032210:CDS | 45.0% | |
| GTGGAGTTCAATGCAATGAG+GGG | - | chr1_1:59197164-59197183 | Msa0032210:CDS | 45.0% | |
| GAGGTTGAGCTTTCTGCTCT+TGG | - | chr1_1:59196177-59196196 | Msa0032210:intron | 50.0% | |
| TGCTTCTGATTCAGGTGTGG+TGG | + | chr1_1:59197014-59197033 | None:intergenic | 50.0% | |
| AGCTGCTTCTGATTCAGGTG+TGG | + | chr1_1:59197017-59197036 | None:intergenic | 50.0% | |
| GAGGTTGAGCTTTCTGCTCT+TGG | - | chr1_1:59196177-59196196 | Msa0032210:intron | 50.0% | |
| TGCTTCTGATTCAGGTGTGG+TGG | + | chr1_1:59197014-59197033 | None:intergenic | 50.0% | |
| AGCTGCTTCTGATTCAGGTG+TGG | + | chr1_1:59197017-59197036 | None:intergenic | 50.0% | |
| !! | CAAAGGTCGGCTTGTGCAGA+AGG | - | chr1_1:59196819-59196838 | Msa0032210:intron | 55.0% |
| ! | TCGGCTTGTGCAGAAGGCAA+AGG | - | chr1_1:59196825-59196844 | Msa0032210:intron | 55.0% |
| !! | CAAAGGTCGGCTTGTGCAGA+AGG | - | chr1_1:59196819-59196838 | Msa0032210:intron | 55.0% |
| ! | TCGGCTTGTGCAGAAGGCAA+AGG | - | chr1_1:59196825-59196844 | Msa0032210:intron | 55.0% |
| ! | TCAGGTGTGGTGGTGTCAGC+AGG | + | chr1_1:59197004-59197023 | None:intergenic | 60.0% |
| AGGGGGGTAGAAAAGGGTCG+TGG | - | chr1_1:59197145-59197164 | Msa0032210:CDS | 60.0% | |
| ! | TCAGGTGTGGTGGTGTCAGC+AGG | + | chr1_1:59197004-59197023 | None:intergenic | 60.0% |
| AGGGGGGTAGAAAAGGGTCG+TGG | - | chr1_1:59197145-59197164 | Msa0032210:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 59195608 | 59197328 | 59195608 | ID=Msa0032210;Name=Msa0032210 |
| chr1_1 | mRNA | 59195608 | 59197328 | 59195608 | ID=Msa0032210-mRNA-1;Parent=Msa0032210;Name=Msa0032210-mRNA-1;_AED=0.22;_eAED=0.22;_QI=74|1|1|1|1|1|5|274|130 |
| chr1_1 | exon | 59195608 | 59195983 | 59195608 | ID=Msa0032210-mRNA-1:exon:18270;Parent=Msa0032210-mRNA-1 |
| chr1_1 | exon | 59196090 | 59196154 | 59196090 | ID=Msa0032210-mRNA-1:exon:18269;Parent=Msa0032210-mRNA-1 |
| chr1_1 | exon | 59196244 | 59196306 | 59196244 | ID=Msa0032210-mRNA-1:exon:18268;Parent=Msa0032210-mRNA-1 |
| chr1_1 | exon | 59196732 | 59196780 | 59196732 | ID=Msa0032210-mRNA-1:exon:18267;Parent=Msa0032210-mRNA-1 |
| chr1_1 | exon | 59197141 | 59197328 | 59197141 | ID=Msa0032210-mRNA-1:exon:18266;Parent=Msa0032210-mRNA-1 |
| chr1_1 | five_prime_UTR | 59197255 | 59197328 | 59197255 | ID=Msa0032210-mRNA-1:five_prime_utr;Parent=Msa0032210-mRNA-1 |
| chr1_1 | CDS | 59197141 | 59197254 | 59197141 | ID=Msa0032210-mRNA-1:cds;Parent=Msa0032210-mRNA-1 |
| chr1_1 | CDS | 59196732 | 59196780 | 59196732 | ID=Msa0032210-mRNA-1:cds;Parent=Msa0032210-mRNA-1 |
| chr1_1 | CDS | 59196244 | 59196306 | 59196244 | ID=Msa0032210-mRNA-1:cds;Parent=Msa0032210-mRNA-1 |
| chr1_1 | CDS | 59196090 | 59196154 | 59196090 | ID=Msa0032210-mRNA-1:cds;Parent=Msa0032210-mRNA-1 |
| chr1_1 | CDS | 59195882 | 59195983 | 59195882 | ID=Msa0032210-mRNA-1:cds;Parent=Msa0032210-mRNA-1 |
| chr1_1 | three_prime_UTR | 59195608 | 59195881 | 59195608 | ID=Msa0032210-mRNA-1:three_prime_utr;Parent=Msa0032210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
