AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0172530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172530 MtrunA17_Chr1g0190531 99.231 130 1 0 1 130 1 130 5.27e-92 261
Msa0172530 MtrunA17_Chr2g0332861 82.000 100 18 0 13 112 19 118 2.19e-56 172
Msa0172530 MtrunA17_Chr4g0003571 75.455 110 22 1 8 112 4 113 1.15e-54 167
Msa0172530 MtrunA17_Chr5g0395021 57.143 91 39 0 20 110 41 131 1.37e-29 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0172530 AT3G04620.1 89.109 101 11 0 14 114 33 133 3.74e-63 190
Msa0172530 AT2G34160.1 73.451 113 30 0 12 124 14 126 7.80e-56 171
Msa0172530 AT1G29250.1 77.228 101 23 0 12 112 14 114 4.53e-53 163

Find 48 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGAATTCTGTTCTTCTTA+TGG 0.143902 1_4:-57610524 None:intergenic
AAACATCATATATTATAATA+TGG 0.229375 1_4:+57611851 Msa0172530:three_prime_UTR
ATTCATGGACGTAAGTAAAT+AGG 0.243793 1_4:+57611920 Msa0172530:three_prime_UTR
CTGAATTCTGTTCTTCTTAT+GGG 0.253699 1_4:-57610523 None:intergenic
TCAGTAGCTGCTTCTGATTC+AGG 0.262383 1_4:-57611814 None:intergenic
TCATTTGCAGTTTCAGTTAC+AGG 0.276939 1_4:-57610498 None:intergenic
GTCAGTGCCTTGTTTATATA+AGG 0.295046 1_4:-57610412 None:intergenic
GTAACGGTAAAGTAGTTTAA+TGG 0.315122 1_4:-57610435 None:intergenic
CCATAAGAAGAACAGAATTC+AGG 0.338440 1_4:+57610524 Msa0172530:CDS
TTCATGGACGTAAGTAAATA+GGG 0.345558 1_4:+57611921 Msa0172530:three_prime_UTR
GTAAAAGAAAAGTGGTTTCT+TGG 0.349846 1_4:-57610556 None:intergenic
AATACAATCTAAAGTTATAA+TGG 0.350985 1_4:-57612006 None:intergenic
GAGGTTGAGCTTTCTGCTCT+TGG 0.357617 1_4:+57610975 Msa0172530:CDS
GAGCTTTCTGCTCTTGGAAT+GGG 0.372225 1_4:+57610981 Msa0172530:CDS
GAAAAGTGGTTTCTTGGTGT+TGG 0.373099 1_4:-57610550 None:intergenic
TTCCACCTCATAATTGAATC+AGG 0.388702 1_4:-57612115 None:intergenic
TAACGGTAAAGTAGTTTAAT+GGG 0.430336 1_4:-57610434 None:intergenic
AGTAAATAGGGGAGTAGAAA+AGG 0.430445 1_4:+57611933 Msa0172530:three_prime_UTR
TGAGCTTTCTGCTCTTGGAA+TGG 0.445801 1_4:+57610980 Msa0172530:CDS
TTTGTAGATTGAAATTGTGC+TGG 0.464511 1_4:+57611741 Msa0172530:intron
AACATCATATATTATAATAT+GGG 0.471119 1_4:+57611852 Msa0172530:three_prime_UTR
TCCATTGTTCTTCAAAATCT+CGG 0.472867 1_4:-57611449 None:intergenic
AATGAGGGGATCAAAGTTGT+AGG 0.482695 1_4:+57611973 Msa0172530:three_prime_UTR
TTCAGTTACAGGTGCAGCTA+TGG 0.492084 1_4:-57610487 None:intergenic
TCAGGTGTGGTGGTGTCAGC+AGG 0.492551 1_4:-57611796 None:intergenic
CAAAGGTCGGCTTGTGCAGA+AGG 0.493622 1_4:+57611614 Msa0172530:CDS
ACCTCATAATTGAATCAGGT+TGG 0.502585 1_4:-57612111 None:intergenic
GTAAATAGGGGAGTAGAAAA+GGG 0.509721 1_4:+57611934 Msa0172530:three_prime_UTR
CCTCATAATTGAATCAGGTT+GGG 0.517241 1_4:-57612110 None:intergenic
GACATCTACAGTTGGCATGA+AGG 0.541089 1_4:+57611584 Msa0172530:CDS
AGGGGAGTAGAAAAGGGTCG+TGG 0.541220 1_4:+57611940 Msa0172530:three_prime_UTR
CGTGGAGTTCAATGCAATGA+GGG 0.553178 1_4:+57611958 Msa0172530:three_prime_UTR
TGAGAAGTTTGACAATATGA+TGG 0.556772 1_4:+57611771 Msa0172530:CDS
TGCTTCTGATTCAGGTGTGG+TGG 0.564894 1_4:-57611806 None:intergenic
GAAGTATTGACATCTACAGT+TGG 0.573871 1_4:+57611576 Msa0172530:intron
TTGTAGATTGAAATTGTGCT+GGG 0.576481 1_4:+57611742 Msa0172530:intron
AGATTGACGTAAAAGAAAAG+TGG 0.580806 1_4:-57610564 None:intergenic
GTAATCCTCTGTAACTGTAA+CGG 0.592251 1_4:-57610451 None:intergenic
AGCTGCTTCTGATTCAGGTG+TGG 0.603045 1_4:-57611809 None:intergenic
CTTTACCGTTACAGTTACAG+AGG 0.610243 1_4:+57610446 Msa0172530:five_prime_UTR
TCGTGGAGTTCAATGCAATG+AGG 0.638219 1_4:+57611957 Msa0172530:three_prime_UTR
TGAAGGATGAGAACAAAGGT+CGG 0.640401 1_4:+57611601 Msa0172530:CDS
TCGGCTTGTGCAGAAGGCAA+AGG 0.641693 1_4:+57611620 Msa0172530:CDS
TCATGGACGTAAGTAAATAG+GGG 0.646244 1_4:+57611922 Msa0172530:three_prime_UTR
ACTCATGCCTTATATAAACA+AGG 0.680741 1_4:+57610405 None:intergenic
GTGGAGTTCAATGCAATGAG+GGG 0.682802 1_4:+57611959 Msa0172530:three_prime_UTR
ATACATTCAGCAGCACAATG+AGG 0.717661 1_4:+57610956 Msa0172530:CDS
GGCATGAAGGATGAGAACAA+AGG 0.737049 1_4:+57611597 Msa0172530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATCATATATTATAATA+TGG + chr1_4:57611851-57611870 Msa0172530:three_prime_UTR 10.0%
!! AACATCATATATTATAATAT+GGG + chr1_4:57611852-57611871 Msa0172530:three_prime_UTR 10.0%
!! AAACATCATATATTATAATA+TGG + chr1_4:57611851-57611870 Msa0172530:three_prime_UTR 10.0%
!! AACATCATATATTATAATAT+GGG + chr1_4:57611852-57611871 Msa0172530:three_prime_UTR 10.0%
!! TAAAAACAATGTAATGTATA+AGG + chr1_4:57611240-57611259 Msa0172530:intron 15.0%
!!! AATACAATCTAAAGTTATAA+TGG - chr1_4:57612009-57612028 None:intergenic 15.0%
!! TAAAAACAATGTAATGTATA+AGG + chr1_4:57611240-57611259 Msa0172530:intron 15.0%
!!! AATACAATCTAAAGTTATAA+TGG - chr1_4:57612009-57612028 None:intergenic 15.0%
!! AATGATCATTAGATTAAGAT+CGG + chr1_4:57610651-57610670 Msa0172530:intron 20.0%
!! ATTTACTTACATTACTTTGA+TGG + chr1_4:57610839-57610858 Msa0172530:intron 20.0%
!! GCTATAGAAAAGAAAAAAAA+TGG + chr1_4:57610885-57610904 Msa0172530:intron 20.0%
!! CAAATTAAAGACAAAAAGAA+GGG - chr1_4:57611033-57611052 None:intergenic 20.0%
!! AGAAGAATCCAATTAATAAT+CGG - chr1_4:57611061-57611080 None:intergenic 20.0%
!!! ATTTTAATGTTAGTTGTTTC+TGG + chr1_4:57611138-57611157 Msa0172530:intron 20.0%
!! AAAAAGAAAAACAGAAAATG+AGG + chr1_4:57611266-57611285 Msa0172530:intron 20.0%
!! CTAATCAATTAATGAATGTT+TGG + chr1_4:57611545-57611564 Msa0172530:intron 20.0%
!! TGAAAGAAAAAAGACATAAT+TGG - chr1_4:57612085-57612104 None:intergenic 20.0%
!!! ATTATGTCTTTTTTCTTTCA+AGG + chr1_4:57612085-57612104 Msa0172530:three_prime_UTR 20.0%
!! AATGATCATTAGATTAAGAT+CGG + chr1_4:57610651-57610670 Msa0172530:intron 20.0%
!! ATTTACTTACATTACTTTGA+TGG + chr1_4:57610839-57610858 Msa0172530:intron 20.0%
!! GCTATAGAAAAGAAAAAAAA+TGG + chr1_4:57610885-57610904 Msa0172530:intron 20.0%
!! CAAATTAAAGACAAAAAGAA+GGG - chr1_4:57611033-57611052 None:intergenic 20.0%
!! AGAAGAATCCAATTAATAAT+CGG - chr1_4:57611061-57611080 None:intergenic 20.0%
!!! ATTTTAATGTTAGTTGTTTC+TGG + chr1_4:57611138-57611157 Msa0172530:intron 20.0%
!! AAAAAGAAAAACAGAAAATG+AGG + chr1_4:57611266-57611285 Msa0172530:intron 20.0%
!! CTAATCAATTAATGAATGTT+TGG + chr1_4:57611545-57611564 Msa0172530:intron 20.0%
!! TGAAAGAAAAAAGACATAAT+TGG - chr1_4:57612085-57612104 None:intergenic 20.0%
!!! ATTATGTCTTTTTTCTTTCA+AGG + chr1_4:57612085-57612104 Msa0172530:three_prime_UTR 20.0%
! TAACGGTAAAGTAGTTTAAT+GGG - chr1_4:57610437-57610456 None:intergenic 25.0%
!! ATGTAATGTCACTTGATAAT+CGG + chr1_4:57610597-57610616 Msa0172530:intron 25.0%
!! GACTTTCTTAATTTTAAGCA+CGG + chr1_4:57610673-57610692 Msa0172530:intron 25.0%
! TTCAAATTGTGATCAACTAA+TGG + chr1_4:57610863-57610882 Msa0172530:intron 25.0%
! AGAAAAGAAAAAAAATGGCT+AGG + chr1_4:57610890-57610909 Msa0172530:intron 25.0%
!! ACAAAAAGAAGGGAAATTTT+AGG - chr1_4:57611023-57611042 None:intergenic 25.0%
! GCAAATTAAAGACAAAAAGA+AGG - chr1_4:57611034-57611053 None:intergenic 25.0%
!!! TTACATTGACTTAACTATCA+AGG + chr1_4:57611169-57611188 Msa0172530:intron 25.0%
!!! TCAAGGCATTATTTTTACTA+TGG + chr1_4:57611186-57611205 Msa0172530:intron 25.0%
!!! TATTTTTACTATGGTGTGTA+AGG + chr1_4:57611195-57611214 Msa0172530:intron 25.0%
!! TACTTTTGTTCAATTGATAG+AGG - chr1_4:57611317-57611336 None:intergenic 25.0%
! TAGAGTAAGAATATGAAACT+AGG - chr1_4:57611356-57611375 None:intergenic 25.0%
! ACAAAAATGTTGACATGAAT+TGG + chr1_4:57611397-57611416 Msa0172530:intron 25.0%
! TATAACTCTCATTCATATGA+TGG + chr1_4:57611512-57611531 Msa0172530:intron 25.0%
!! TGTTGTAATTTTTGCATTCA+TGG + chr1_4:57611905-57611924 Msa0172530:three_prime_UTR 25.0%
! TAACGGTAAAGTAGTTTAAT+GGG - chr1_4:57610437-57610456 None:intergenic 25.0%
!! ATGTAATGTCACTTGATAAT+CGG + chr1_4:57610597-57610616 Msa0172530:intron 25.0%
!! GACTTTCTTAATTTTAAGCA+CGG + chr1_4:57610673-57610692 Msa0172530:intron 25.0%
! TTCAAATTGTGATCAACTAA+TGG + chr1_4:57610863-57610882 Msa0172530:intron 25.0%
! AGAAAAGAAAAAAAATGGCT+AGG + chr1_4:57610890-57610909 Msa0172530:intron 25.0%
!! ACAAAAAGAAGGGAAATTTT+AGG - chr1_4:57611023-57611042 None:intergenic 25.0%
! GCAAATTAAAGACAAAAAGA+AGG - chr1_4:57611034-57611053 None:intergenic 25.0%
!!! TTACATTGACTTAACTATCA+AGG + chr1_4:57611169-57611188 Msa0172530:intron 25.0%
!!! TCAAGGCATTATTTTTACTA+TGG + chr1_4:57611186-57611205 Msa0172530:intron 25.0%
!!! TATTTTTACTATGGTGTGTA+AGG + chr1_4:57611195-57611214 Msa0172530:intron 25.0%
!! TACTTTTGTTCAATTGATAG+AGG - chr1_4:57611317-57611336 None:intergenic 25.0%
! TAGAGTAAGAATATGAAACT+AGG - chr1_4:57611356-57611375 None:intergenic 25.0%
! ACAAAAATGTTGACATGAAT+TGG + chr1_4:57611397-57611416 Msa0172530:intron 25.0%
! TATAACTCTCATTCATATGA+TGG + chr1_4:57611512-57611531 Msa0172530:intron 25.0%
!! TGTTGTAATTTTTGCATTCA+TGG + chr1_4:57611905-57611924 Msa0172530:three_prime_UTR 25.0%
GTAACGGTAAAGTAGTTTAA+TGG - chr1_4:57610438-57610457 None:intergenic 30.0%
CTGAATTCTGTTCTTCTTAT+GGG - chr1_4:57610526-57610545 None:intergenic 30.0%
GTAAAAGAAAAGTGGTTTCT+TGG - chr1_4:57610559-57610578 None:intergenic 30.0%
AGATTGACGTAAAAGAAAAG+TGG - chr1_4:57610567-57610586 None:intergenic 30.0%
! TGTAATGTCACTTGATAATC+GGG + chr1_4:57610598-57610617 Msa0172530:intron 30.0%
AATGATCATTGATGTAGTGA+CGG - chr1_4:57610641-57610660 None:intergenic 30.0%
ACTGTTTAATCTGAATTCAG+CGG + chr1_4:57610740-57610759 Msa0172530:intron 30.0%
TTGCACAACCGATTATTAAT+TGG + chr1_4:57611050-57611069 Msa0172530:intron 30.0%
AATTGATAGAGGATATCTGT+TGG - chr1_4:57611306-57611325 None:intergenic 30.0%
TCCATTGTTCTTCAAAATCT+CGG - chr1_4:57611452-57611471 None:intergenic 30.0%
! TGAATTCTCTTCATTTTCGT+CGG - chr1_4:57611653-57611672 None:intergenic 30.0%
CAAAATACCAAGAAAAGTCT+AGG - chr1_4:57611725-57611744 None:intergenic 30.0%
TTTGTAGATTGAAATTGTGC+TGG + chr1_4:57611741-57611760 Msa0172530:intron 30.0%
TTGTAGATTGAAATTGTGCT+GGG + chr1_4:57611742-57611761 Msa0172530:intron 30.0%
TGAGAAGTTTGACAATATGA+TGG + chr1_4:57611771-57611790 Msa0172530:CDS 30.0%
ATTCATGGACGTAAGTAAAT+AGG + chr1_4:57611920-57611939 Msa0172530:three_prime_UTR 30.0%
TTCATGGACGTAAGTAAATA+GGG + chr1_4:57611921-57611940 Msa0172530:three_prime_UTR 30.0%
GTAACGGTAAAGTAGTTTAA+TGG - chr1_4:57610438-57610457 None:intergenic 30.0%
CTGAATTCTGTTCTTCTTAT+GGG - chr1_4:57610526-57610545 None:intergenic 30.0%
GTAAAAGAAAAGTGGTTTCT+TGG - chr1_4:57610559-57610578 None:intergenic 30.0%
AGATTGACGTAAAAGAAAAG+TGG - chr1_4:57610567-57610586 None:intergenic 30.0%
! TGTAATGTCACTTGATAATC+GGG + chr1_4:57610598-57610617 Msa0172530:intron 30.0%
AATGATCATTGATGTAGTGA+CGG - chr1_4:57610641-57610660 None:intergenic 30.0%
ACTGTTTAATCTGAATTCAG+CGG + chr1_4:57610740-57610759 Msa0172530:intron 30.0%
TTGCACAACCGATTATTAAT+TGG + chr1_4:57611050-57611069 Msa0172530:intron 30.0%
AATTGATAGAGGATATCTGT+TGG - chr1_4:57611306-57611325 None:intergenic 30.0%
TCCATTGTTCTTCAAAATCT+CGG - chr1_4:57611452-57611471 None:intergenic 30.0%
! TGAATTCTCTTCATTTTCGT+CGG - chr1_4:57611653-57611672 None:intergenic 30.0%
CAAAATACCAAGAAAAGTCT+AGG - chr1_4:57611725-57611744 None:intergenic 30.0%
TTTGTAGATTGAAATTGTGC+TGG + chr1_4:57611741-57611760 Msa0172530:intron 30.0%
TTGTAGATTGAAATTGTGCT+GGG + chr1_4:57611742-57611761 Msa0172530:intron 30.0%
TGAGAAGTTTGACAATATGA+TGG + chr1_4:57611771-57611790 Msa0172530:CDS 30.0%
ATTCATGGACGTAAGTAAAT+AGG + chr1_4:57611920-57611939 Msa0172530:three_prime_UTR 30.0%
TTCATGGACGTAAGTAAATA+GGG + chr1_4:57611921-57611940 Msa0172530:three_prime_UTR 30.0%
!! GTCAGTGCCTTGTTTATATA+AGG - chr1_4:57610415-57610434 None:intergenic 35.0%
GTAATCCTCTGTAACTGTAA+CGG - chr1_4:57610454-57610473 None:intergenic 35.0%
TCATTTGCAGTTTCAGTTAC+AGG - chr1_4:57610501-57610520 None:intergenic 35.0%
CCTGAATTCTGTTCTTCTTA+TGG - chr1_4:57610527-57610546 None:intergenic 35.0%
CCATAAGAAGAACAGAATTC+AGG + chr1_4:57610524-57610543 Msa0172530:CDS 35.0%
CAAGTGACATTACATTACCT+TGG - chr1_4:57610592-57610611 None:intergenic 35.0%
TGAATGTATCTCTGCATCAA+AGG - chr1_4:57610945-57610964 None:intergenic 35.0%
TATGAAACTAGGAACAGATG+AGG - chr1_4:57611345-57611364 None:intergenic 35.0%
!! GAAGTATTGACATCTACAGT+TGG + chr1_4:57611576-57611595 Msa0172530:intron 35.0%
! TCTTAAGCCTAGACTTTTCT+TGG + chr1_4:57611715-57611734 Msa0172530:intron 35.0%
TCATGGACGTAAGTAAATAG+GGG + chr1_4:57611922-57611941 Msa0172530:three_prime_UTR 35.0%
AGTAAATAGGGGAGTAGAAA+AGG + chr1_4:57611933-57611952 Msa0172530:three_prime_UTR 35.0%
GTAAATAGGGGAGTAGAAAA+GGG + chr1_4:57611934-57611953 Msa0172530:three_prime_UTR 35.0%
!! GTCAGTGCCTTGTTTATATA+AGG - chr1_4:57610415-57610434 None:intergenic 35.0%
GTAATCCTCTGTAACTGTAA+CGG - chr1_4:57610454-57610473 None:intergenic 35.0%
TCATTTGCAGTTTCAGTTAC+AGG - chr1_4:57610501-57610520 None:intergenic 35.0%
CCTGAATTCTGTTCTTCTTA+TGG - chr1_4:57610527-57610546 None:intergenic 35.0%
CCATAAGAAGAACAGAATTC+AGG + chr1_4:57610524-57610543 Msa0172530:CDS 35.0%
CAAGTGACATTACATTACCT+TGG - chr1_4:57610592-57610611 None:intergenic 35.0%
TGAATGTATCTCTGCATCAA+AGG - chr1_4:57610945-57610964 None:intergenic 35.0%
TATGAAACTAGGAACAGATG+AGG - chr1_4:57611345-57611364 None:intergenic 35.0%
!! GAAGTATTGACATCTACAGT+TGG + chr1_4:57611576-57611595 Msa0172530:intron 35.0%
! TCTTAAGCCTAGACTTTTCT+TGG + chr1_4:57611715-57611734 Msa0172530:intron 35.0%
TCATGGACGTAAGTAAATAG+GGG + chr1_4:57611922-57611941 Msa0172530:three_prime_UTR 35.0%
AGTAAATAGGGGAGTAGAAA+AGG + chr1_4:57611933-57611952 Msa0172530:three_prime_UTR 35.0%
GTAAATAGGGGAGTAGAAAA+GGG + chr1_4:57611934-57611953 Msa0172530:three_prime_UTR 35.0%
CTTTACCGTTACAGTTACAG+AGG + chr1_4:57610446-57610465 Msa0172530:five_prime_UTR 40.0%
! GAAAAGTGGTTTCTTGGTGT+TGG - chr1_4:57610553-57610572 None:intergenic 40.0%
! CTTGATAATCGGGATACCTT+TGG + chr1_4:57610608-57610627 Msa0172530:intron 40.0%
TAGTGACGGTATGAATCCAA+AGG - chr1_4:57610627-57610646 None:intergenic 40.0%
CATTCATGTAGTCGATGCAT+TGG - chr1_4:57610769-57610788 None:intergenic 40.0%
ATACATTCAGCAGCACAATG+AGG + chr1_4:57610956-57610975 Msa0172530:CDS 40.0%
!! GCCGAGATTTTGAAGAACAA+TGG + chr1_4:57611448-57611467 Msa0172530:CDS 40.0%
ACTTGCAACTGAGAAGAGTA+AGG + chr1_4:57611471-57611490 Msa0172530:intron 40.0%
TGAAGGATGAGAACAAAGGT+CGG + chr1_4:57611601-57611620 Msa0172530:CDS 40.0%
AATGAGGGGATCAAAGTTGT+AGG + chr1_4:57611973-57611992 Msa0172530:three_prime_UTR 40.0%
CTTTACCGTTACAGTTACAG+AGG + chr1_4:57610446-57610465 Msa0172530:five_prime_UTR 40.0%
! GAAAAGTGGTTTCTTGGTGT+TGG - chr1_4:57610553-57610572 None:intergenic 40.0%
! CTTGATAATCGGGATACCTT+TGG + chr1_4:57610608-57610627 Msa0172530:intron 40.0%
TAGTGACGGTATGAATCCAA+AGG - chr1_4:57610627-57610646 None:intergenic 40.0%
CATTCATGTAGTCGATGCAT+TGG - chr1_4:57610769-57610788 None:intergenic 40.0%
ATACATTCAGCAGCACAATG+AGG + chr1_4:57610956-57610975 Msa0172530:CDS 40.0%
!! GCCGAGATTTTGAAGAACAA+TGG + chr1_4:57611448-57611467 Msa0172530:CDS 40.0%
ACTTGCAACTGAGAAGAGTA+AGG + chr1_4:57611471-57611490 Msa0172530:intron 40.0%
TGAAGGATGAGAACAAAGGT+CGG + chr1_4:57611601-57611620 Msa0172530:CDS 40.0%
AATGAGGGGATCAAAGTTGT+AGG + chr1_4:57611973-57611992 Msa0172530:three_prime_UTR 40.0%
TTCAGTTACAGGTGCAGCTA+TGG - chr1_4:57610490-57610509 None:intergenic 45.0%
! CTTTTACGTCAATCTCGCCA+AGG + chr1_4:57610572-57610591 Msa0172530:CDS 45.0%
TGAGCTTTCTGCTCTTGGAA+TGG + chr1_4:57610980-57610999 Msa0172530:CDS 45.0%
GAGCTTTCTGCTCTTGGAAT+GGG + chr1_4:57610981-57611000 Msa0172530:CDS 45.0%
GACATCTACAGTTGGCATGA+AGG + chr1_4:57611584-57611603 Msa0172530:CDS 45.0%
GGCATGAAGGATGAGAACAA+AGG + chr1_4:57611597-57611616 Msa0172530:CDS 45.0%
TCAGTAGCTGCTTCTGATTC+AGG - chr1_4:57611817-57611836 None:intergenic 45.0%
TCGTGGAGTTCAATGCAATG+AGG + chr1_4:57611957-57611976 Msa0172530:three_prime_UTR 45.0%
CGTGGAGTTCAATGCAATGA+GGG + chr1_4:57611958-57611977 Msa0172530:three_prime_UTR 45.0%
GTGGAGTTCAATGCAATGAG+GGG + chr1_4:57611959-57611978 Msa0172530:three_prime_UTR 45.0%
TTCAGTTACAGGTGCAGCTA+TGG - chr1_4:57610490-57610509 None:intergenic 45.0%
! CTTTTACGTCAATCTCGCCA+AGG + chr1_4:57610572-57610591 Msa0172530:CDS 45.0%
TGAGCTTTCTGCTCTTGGAA+TGG + chr1_4:57610980-57610999 Msa0172530:CDS 45.0%
GAGCTTTCTGCTCTTGGAAT+GGG + chr1_4:57610981-57611000 Msa0172530:CDS 45.0%
GACATCTACAGTTGGCATGA+AGG + chr1_4:57611584-57611603 Msa0172530:CDS 45.0%
GGCATGAAGGATGAGAACAA+AGG + chr1_4:57611597-57611616 Msa0172530:CDS 45.0%
TCAGTAGCTGCTTCTGATTC+AGG - chr1_4:57611817-57611836 None:intergenic 45.0%
TCGTGGAGTTCAATGCAATG+AGG + chr1_4:57611957-57611976 Msa0172530:three_prime_UTR 45.0%
CGTGGAGTTCAATGCAATGA+GGG + chr1_4:57611958-57611977 Msa0172530:three_prime_UTR 45.0%
GTGGAGTTCAATGCAATGAG+GGG + chr1_4:57611959-57611978 Msa0172530:three_prime_UTR 45.0%
GAGGTTGAGCTTTCTGCTCT+TGG + chr1_4:57610975-57610994 Msa0172530:CDS 50.0%
TGCTTCTGATTCAGGTGTGG+TGG - chr1_4:57611809-57611828 None:intergenic 50.0%
AGCTGCTTCTGATTCAGGTG+TGG - chr1_4:57611812-57611831 None:intergenic 50.0%
GAGGTTGAGCTTTCTGCTCT+TGG + chr1_4:57610975-57610994 Msa0172530:CDS 50.0%
TGCTTCTGATTCAGGTGTGG+TGG - chr1_4:57611809-57611828 None:intergenic 50.0%
AGCTGCTTCTGATTCAGGTG+TGG - chr1_4:57611812-57611831 None:intergenic 50.0%
!! CAAAGGTCGGCTTGTGCAGA+AGG + chr1_4:57611614-57611633 Msa0172530:CDS 55.0%
! TCGGCTTGTGCAGAAGGCAA+AGG + chr1_4:57611620-57611639 Msa0172530:CDS 55.0%
AGGGGAGTAGAAAAGGGTCG+TGG + chr1_4:57611940-57611959 Msa0172530:three_prime_UTR 55.0%
!! CAAAGGTCGGCTTGTGCAGA+AGG + chr1_4:57611614-57611633 Msa0172530:CDS 55.0%
! TCGGCTTGTGCAGAAGGCAA+AGG + chr1_4:57611620-57611639 Msa0172530:CDS 55.0%
AGGGGAGTAGAAAAGGGTCG+TGG + chr1_4:57611940-57611959 Msa0172530:three_prime_UTR 55.0%
! TCAGGTGTGGTGGTGTCAGC+AGG - chr1_4:57611799-57611818 None:intergenic 60.0%
! TCAGGTGTGGTGGTGTCAGC+AGG - chr1_4:57611799-57611818 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 57610406 57612123 57610406 ID=Msa0172530;Name=Msa0172530
chr1_4 mRNA 57610406 57612123 57610406 ID=Msa0172530-mRNA-1;Parent=Msa0172530;Name=Msa0172530-mRNA-1;_AED=0.22;_eAED=0.22;_QI=74|1|1|1|1|1|5|274|130
chr1_4 exon 57610406 57610593 57610406 ID=Msa0172530-mRNA-1:exon:17634;Parent=Msa0172530-mRNA-1
chr1_4 exon 57610954 57611002 57610954 ID=Msa0172530-mRNA-1:exon:17635;Parent=Msa0172530-mRNA-1
chr1_4 exon 57611425 57611487 57611425 ID=Msa0172530-mRNA-1:exon:17636;Parent=Msa0172530-mRNA-1
chr1_4 exon 57611577 57611641 57611577 ID=Msa0172530-mRNA-1:exon:17637;Parent=Msa0172530-mRNA-1
chr1_4 exon 57611748 57612123 57611748 ID=Msa0172530-mRNA-1:exon:17638;Parent=Msa0172530-mRNA-1
chr1_4 five_prime_UTR 57610406 57610479 57610406 ID=Msa0172530-mRNA-1:five_prime_utr;Parent=Msa0172530-mRNA-1
chr1_4 CDS 57610480 57610593 57610480 ID=Msa0172530-mRNA-1:cds;Parent=Msa0172530-mRNA-1
chr1_4 CDS 57610954 57611002 57610954 ID=Msa0172530-mRNA-1:cds;Parent=Msa0172530-mRNA-1
chr1_4 CDS 57611425 57611487 57611425 ID=Msa0172530-mRNA-1:cds;Parent=Msa0172530-mRNA-1
chr1_4 CDS 57611577 57611641 57611577 ID=Msa0172530-mRNA-1:cds;Parent=Msa0172530-mRNA-1
chr1_4 CDS 57611748 57611849 57611748 ID=Msa0172530-mRNA-1:cds;Parent=Msa0172530-mRNA-1
chr1_4 three_prime_UTR 57611850 57612123 57611850 ID=Msa0172530-mRNA-1:three_prime_utr;Parent=Msa0172530-mRNA-1
Gene Sequence

>Msa0172530

ATGACGACCATAGCTGCACCTGTAACTGAAACTGCAAATGAATCCCATAAGAAGAACAGAATTCAGGTTTCCAACACCAAGAAACCACTTTTCTTTTACGTCAATCTCGCCAAGAGATACATTCAGCAGCACAATGAGGTTGAGCTTTCTGCTCTTGGAATGGCTATAGCTACAGTTGTCACGATCGCCGAGATTTTGAAGAACAATGGACTTGCAACTGAGAAGAAAGTATTGACATCTACAGTTGGCATGAAGGATGAGAACAAAGGTCGGCTTGTGCAGAAGGCAAAGATTGAAATTGTGCTGGGTAAGTCTGAGAAGTTTGACAATATGATGGCTCCTGCTGACACCACCACACCTGAATCAGAAGCAGCTACTGATGACAAGAAATGA

Protein sequence

>Msa0172530

MTTIAAPVTETANESHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAIATVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDNMMAPADTTTPESEAATDDKK*