Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339450 | XP_013465392.1 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 784 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339450 | sp|P30171|ACT11_SOLTU | 97.347 | 377 | 10 | 0 | 1 | 377 | 1 | 377 | 0.0 | 771 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339450 | A0A072VCE0 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 784 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004180 | Msa0339450 | 0.809053 | 2.287706e-50 | -8.615850e-47 |
| Msa0047660 | Msa0339450 | 0.805977 | 1.028693e-49 | -8.615850e-47 |
| Msa0075080 | Msa0339450 | 0.805206 | 1.493271e-49 | -8.615850e-47 |
| Msa0122930 | Msa0339450 | 0.808380 | 3.187213e-50 | -8.615850e-47 |
| Msa0129820 | Msa0339450 | 0.816620 | 5.035459e-52 | -8.615850e-47 |
| Msa0145990 | Msa0339450 | 0.800639 | 1.311251e-48 | -8.615850e-47 |
| Msa0162170 | Msa0339450 | 0.811035 | 8.561470e-51 | -8.615850e-47 |
| Msa0164310 | Msa0339450 | 0.815737 | 7.932197e-52 | -8.615850e-47 |
| Msa0167570 | Msa0339450 | 0.806123 | 9.583953e-50 | -8.615850e-47 |
| Msa0168470 | Msa0339450 | 0.804544 | 2.053317e-49 | -8.615850e-47 |
| Msa0213590 | Msa0339450 | 0.820425 | 6.906902e-53 | -8.615850e-47 |
| Msa0222850 | Msa0339450 | 0.981052 | 1.166500e-151 | -8.615850e-47 |
| Msa0264290 | Msa0339450 | 0.997905 | 1.084386e-251 | -8.615850e-47 |
| Msa0279800 | Msa0339450 | 0.819029 | 1.438996e-52 | -8.615850e-47 |
| Msa0302280 | Msa0339450 | 0.959273 | 2.919257e-117 | -8.615850e-47 |
| Msa0307820 | Msa0339450 | 0.802169 | 6.373418e-49 | -8.615850e-47 |
| Msa0339450 | Msa0355990 | 0.802379 | 5.770515e-49 | -8.615850e-47 |
| Msa0339450 | Msa0386230 | 0.801281 | 9.696864e-49 | -8.615850e-47 |
| Msa0339450 | Msa0433090 | -0.805824 | 1.107621e-49 | -8.615850e-47 |
| Msa0339450 | Msa0474630 | 0.809902 | 1.504140e-50 | -8.615850e-47 |
| Msa0339450 | Msa0484590 | 0.815933 | 7.170155e-52 | -8.615850e-47 |
| Msa0339450 | Msa0490740 | 0.820046 | 8.434210e-53 | -8.615850e-47 |
| Msa0339450 | Msa0506700 | 0.800103 | 1.686240e-48 | -8.615850e-47 |
| Msa0339450 | Msa0524710 | -0.816008 | 6.900016e-52 | -8.615850e-47 |
| Msa0339450 | Msa0597820 | -0.808853 | 2.525411e-50 | -8.615850e-47 |
| Msa0339450 | Msa0619450 | 0.815275 | 1.004866e-51 | -8.615850e-47 |
| Msa0339450 | Msa0619530 | 0.812358 | 4.413974e-51 | -8.615850e-47 |
| Msa0339450 | Msa0637590 | -0.807468 | 4.981661e-50 | -8.615850e-47 |
| Msa0339450 | Msa0659580 | 0.816880 | 4.402313e-52 | -8.615850e-47 |
| Msa0339450 | Msa0985980 | 0.809503 | 1.832379e-50 | -8.615850e-47 |
| Msa0339450 | Msa1002550 | 0.801447 | 8.964879e-49 | -8.615850e-47 |
| Msa0339450 | Msa1102410 | 0.811662 | 6.259231e-51 | -8.615850e-47 |
| Msa0339450 | Msa1130150 | 0.802191 | 6.308531e-49 | -8.615850e-47 |
| Msa0339450 | Msa1197740 | 0.802761 | 4.812275e-49 | -8.615850e-47 |
| Msa0339450 | Msa1215540 | 0.801958 | 7.042705e-49 | -8.615850e-47 |
| Msa0339450 | Msa1297490 | 0.802297 | 5.997368e-49 | -8.615850e-47 |
| Msa0339450 | Msa1297550 | 0.800257 | 1.569084e-48 | -8.615850e-47 |
| Msa0339450 | Msa1325260 | 0.803217 | 3.874074e-49 | -8.615850e-47 |
| Msa0339450 | Msa1390200 | -0.809474 | 1.859192e-50 | -8.615850e-47 |
| Msa0339450 | Msa1395200 | 0.803244 | 3.824668e-49 | -8.615850e-47 |
| Msa0339450 | Msa1437590 | -0.815706 | 8.059370e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339450 | MtrunA17_Chr2g0328091 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 784 |
| Msa0339450 | MtrunA17_Chr1g0175391 | 98.674 | 377 | 5 | 0 | 1 | 377 | 1 | 377 | 0.0 | 776 |
| Msa0339450 | MtrunA17_Chr6g0448881 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 768 |
| Msa0339450 | MtrunA17_Chr7g0223901 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 768 |
| Msa0339450 | MtrunA17_Chr7g0258721 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 765 |
| Msa0339450 | MtrunA17_Chr3g0129641 | 94.960 | 377 | 19 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0339450 | MtrunA17_Chr2g0278591 | 93.634 | 377 | 24 | 0 | 1 | 377 | 1 | 377 | 0.0 | 752 |
| Msa0339450 | MtrunA17_Chr7g0224401 | 42.480 | 379 | 204 | 3 | 10 | 374 | 7 | 385 | 1.11e-118 | 349 |
| Msa0339450 | MtrunA17_Chr5g0427591 | 37.220 | 446 | 207 | 10 | 1 | 376 | 1 | 443 | 8.46e-94 | 287 |
| Msa0339450 | MtrunA17_Chr8g0361001 | 37.220 | 446 | 207 | 10 | 1 | 376 | 1 | 443 | 1.11e-93 | 287 |
| Msa0339450 | MtrunA17_Chr8g0381261 | 34.550 | 411 | 219 | 8 | 10 | 372 | 10 | 418 | 4.30e-72 | 231 |
| Msa0339450 | MtrunA17_Chr3g0089031 | 37.105 | 380 | 213 | 9 | 7 | 377 | 1 | 363 | 8.35e-68 | 218 |
| Msa0339450 | MtrunA17_Chr2g0305361 | 27.650 | 434 | 248 | 7 | 8 | 377 | 6 | 437 | 2.57e-56 | 190 |
| Msa0339450 | MtrunA17_Chr3g0080021 | 30.303 | 297 | 183 | 9 | 91 | 371 | 179 | 467 | 1.66e-40 | 149 |
| Msa0339450 | MtrunA17_Chr8g0369101 | 31.058 | 293 | 175 | 10 | 91 | 366 | 187 | 469 | 6.18e-36 | 136 |
| Msa0339450 | MtrunA17_Chr3g0111971 | 28.968 | 252 | 160 | 7 | 9 | 245 | 21 | 268 | 7.47e-22 | 97.4 |
| Msa0339450 | MtrunA17_Chr3g0111971 | 33.607 | 122 | 78 | 2 | 250 | 368 | 586 | 707 | 3.60e-16 | 80.1 |
| Msa0339450 | MtrunA17_Chr8g0336071 | 40.000 | 95 | 57 | 0 | 105 | 199 | 1 | 95 | 3.19e-19 | 82.0 |
| Msa0339450 | MtrunA17_Chr8g0336061 | 43.478 | 92 | 39 | 2 | 241 | 319 | 12 | 103 | 4.07e-19 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0339450 | AT3G12110.1 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 765 |
| Msa0339450 | AT3G53750.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0339450 | AT3G53750.2 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0339450 | AT2G37620.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0339450 | AT2G37620.3 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0339450 | AT2G37620.2 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0339450 | AT2G37620.4 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0339450 | AT5G59370.2 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0339450 | AT5G59370.1 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0339450 | AT3G46520.2 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0339450 | AT3G46520.1 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0339450 | AT5G09810.1 | 94.960 | 377 | 19 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa0339450 | AT1G49240.1 | 92.573 | 377 | 28 | 0 | 1 | 377 | 1 | 377 | 0.0 | 745 |
| Msa0339450 | AT3G18780.2 | 92.308 | 377 | 29 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| Msa0339450 | AT3G18780.3 | 92.308 | 377 | 29 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| Msa0339450 | AT3G18780.1 | 92.201 | 359 | 28 | 0 | 1 | 359 | 1 | 359 | 0.0 | 703 |
| Msa0339450 | AT2G42100.1 | 83.967 | 368 | 59 | 0 | 10 | 377 | 11 | 378 | 0.0 | 673 |
| Msa0339450 | AT2G42090.1 | 70.000 | 370 | 106 | 1 | 7 | 376 | 1 | 365 | 0.0 | 564 |
| Msa0339450 | AT2G42170.1 | 77.108 | 332 | 73 | 1 | 46 | 377 | 1 | 329 | 0.0 | 556 |
| Msa0339450 | AT2G42170.3 | 77.108 | 332 | 73 | 1 | 46 | 377 | 1 | 329 | 0.0 | 556 |
| Msa0339450 | AT2G42170.4 | 76.923 | 312 | 69 | 1 | 46 | 357 | 1 | 309 | 0.0 | 518 |
| Msa0339450 | AT2G42170.2 | 76.923 | 312 | 69 | 1 | 46 | 357 | 1 | 309 | 0.0 | 518 |
| Msa0339450 | AT2G42170.5 | 76.991 | 226 | 49 | 1 | 152 | 377 | 9 | 231 | 2.26e-130 | 373 |
| Msa0339450 | AT3G27000.1 | 43.536 | 379 | 200 | 4 | 10 | 374 | 7 | 385 | 5.07e-121 | 355 |
| Msa0339450 | AT1G18450.1 | 37.472 | 443 | 207 | 9 | 1 | 376 | 1 | 440 | 1.55e-95 | 292 |
| Msa0339450 | AT1G13180.1 | 34.223 | 412 | 219 | 9 | 10 | 372 | 9 | 417 | 2.85e-72 | 232 |
| Msa0339450 | AT3G60830.1 | 37.467 | 379 | 213 | 9 | 7 | 377 | 1 | 363 | 6.00e-67 | 216 |
| Msa0339450 | AT3G33520.1 | 30.166 | 421 | 236 | 7 | 10 | 377 | 5 | 420 | 5.60e-58 | 194 |
| Msa0339450 | AT5G56180.3 | 31.338 | 284 | 170 | 9 | 91 | 358 | 50 | 324 | 1.99e-35 | 132 |
| Msa0339450 | AT5G56180.1 | 31.338 | 284 | 170 | 9 | 91 | 358 | 182 | 456 | 1.21e-34 | 133 |
| Msa0339450 | AT3G12380.2 | 29.183 | 257 | 159 | 6 | 9 | 245 | 21 | 274 | 1.23e-24 | 106 |
| Msa0339450 | AT3G12380.2 | 32.738 | 168 | 106 | 4 | 207 | 368 | 550 | 716 | 3.91e-17 | 83.6 |
| Msa0339450 | AT3G12380.1 | 29.020 | 255 | 156 | 6 | 9 | 245 | 21 | 268 | 4.92e-24 | 104 |
| Msa0339450 | AT3G12380.1 | 32.738 | 168 | 106 | 4 | 207 | 368 | 544 | 710 | 3.79e-17 | 83.6 |
| Msa0339450 | AT1G73910.1 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.11e-23 | 95.1 |
| Msa0339450 | AT1G73910.2 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.11e-23 | 95.1 |
| Msa0339450 | AT5G56180.2 | 32.178 | 202 | 114 | 8 | 91 | 281 | 182 | 371 | 2.11e-19 | 89.4 |
| Msa0339450 | AT1G73910.3 | 29.268 | 123 | 71 | 2 | 1 | 107 | 1 | 123 | 3.02e-12 | 64.7 |
Find 109 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGATCTTCATGCTGCTT+GGG | 0.250595 | 2_4:-60599449 | None:intergenic |
| AGCAAAACCGGGTGCTCCTC+TGG | 0.272892 | 2_4:-60598501 | None:intergenic |
| CAACCACTGGTCTGTGATAA+TGG | 0.278942 | 2_4:+60597891 | Msa0339450:CDS |
| AACATTTAGGCTGGATTTGC+TGG | 0.289528 | 2_4:+60598255 | Msa0339450:intron |
| TGCTATGTATGTTGCTATTC+AGG | 0.305017 | 2_4:+60598599 | Msa0339450:CDS |
| GGGATGACATGGAGAAAATT+TGG | 0.308086 | 2_4:+60598445 | Msa0339450:CDS |
| AGGGCATATCCTTCATAAAT+AGG | 0.317673 | 2_4:-60598976 | None:intergenic |
| CACACGGAGTTCATTGTAAA+AGG | 0.330285 | 2_4:-60598475 | None:intergenic |
| ACCTTGATCTTCATGCTGCT+TGG | 0.336588 | 2_4:-60599450 | None:intergenic |
| AGCATGGTATTGTGAGTAAC+TGG | 0.340011 | 2_4:+60598424 | Msa0339450:CDS |
| TCAACGGTTGCAGCTGAGAT+AGG | 0.377020 | 2_4:+60597369 | Msa0339450:five_prime_UTR |
| GGTGCTTCAGTGAGCAAAAC+CGG | 0.396077 | 2_4:-60598513 | None:intergenic |
| CTCACAATACCATGCTCAAT+TGG | 0.397001 | 2_4:-60598417 | None:intergenic |
| CAAGCTCTTGCTCAAAATCA+AGG | 0.399460 | 2_4:-60599146 | None:intergenic |
| CTCATTCTGTCAGCAATGCC+AGG | 0.400398 | 2_4:-60599405 | None:intergenic |
| ATCCTTCGTCTTGATTTAGC+AGG | 0.412905 | 2_4:+60599009 | Msa0339450:CDS |
| GATGGCCAGATCATCACTAT+TGG | 0.420978 | 2_4:+60599216 | Msa0339450:CDS |
| AAGAACGACATTAACGTTGT+TGG | 0.421667 | 2_4:-60597226 | None:intergenic |
| CCGAGAGAAAATACAGTGTC+TGG | 0.425088 | 2_4:+60599484 | Msa0339450:CDS |
| GCAAAACCGGGTGCTCCTCT+GGG | 0.429592 | 2_4:-60598500 | None:intergenic |
| TACAATTTCACGCTCGGCTG+TGG | 0.436320 | 2_4:-60599091 | None:intergenic |
| TATGGAAATATTGTCCTTAG+TGG | 0.444109 | 2_4:+60599366 | Msa0339450:CDS |
| CACTGGTGTGATGGTTGGCA+TGG | 0.449957 | 2_4:+60598329 | Msa0339450:CDS |
| GATATCAGAAAGGACTTGTA+TGG | 0.450042 | 2_4:+60599348 | Msa0339450:CDS |
| TAGAATGCTGCAGAATGGTT+TGG | 0.453399 | 2_4:+60599736 | Msa0339450:exon |
| AGTGCTAAGAGAAGCTAAGA+TGG | 0.454030 | 2_4:-60599517 | None:intergenic |
| CTTGATCTTCATGCTGCTTG+GGG | 0.455780 | 2_4:-60599448 | None:intergenic |
| TATGCTAGTGGTCGAACAAC+CGG | 0.457727 | 2_4:+60598636 | Msa0339450:CDS |
| CAGCTCCAATAGTGATGATC+TGG | 0.458059 | 2_4:-60599221 | None:intergenic |
| ATCTCTTACAATTTCACGCT+CGG | 0.471407 | 2_4:-60599097 | None:intergenic |
| GCTGTGTTTCCTAGCATTGT+TGG | 0.477335 | 2_4:+60598294 | Msa0339450:CDS |
| TAATGGAACAGGAATGGTTA+AGG | 0.478719 | 2_4:+60597908 | Msa0339450:CDS |
| CTGGTCTGTGATAATGGAAC+AGG | 0.481376 | 2_4:+60597897 | Msa0339450:CDS |
| AAATACAGTGTCTGGATTGG+TGG | 0.485676 | 2_4:+60599492 | Msa0339450:CDS |
| CCAGCCTTCCATGGTTGGAA+TGG | 0.489084 | 2_4:+60599272 | Msa0339450:CDS |
| ATAGTGATGATCTGGCCATC+AGG | 0.494142 | 2_4:-60599213 | None:intergenic |
| AAGGCCGAGTACGATGAATC+TGG | 0.498285 | 2_4:+60599685 | Msa0339450:CDS |
| AAGAATAACCACGCTCGGTA+AGG | 0.505013 | 2_4:-60599062 | None:intergenic |
| ATGAAAATCCTTACCGAGCG+TGG | 0.509930 | 2_4:+60599054 | Msa0339450:CDS |
| AGAAAATACAGTGTCTGGAT+TGG | 0.510090 | 2_4:+60599489 | Msa0339450:CDS |
| CCATTCCAACCATGGAAGGC+TGG | 0.515654 | 2_4:-60599272 | None:intergenic |
| TAGAGTCAATATACCACGCT+TGG | 0.516667 | 2_4:-60598388 | None:intergenic |
| CACACTGTGCCTATTTATGA+AGG | 0.522782 | 2_4:+60598967 | Msa0339450:CDS |
| ATGCTAGGAAACACAGCCCT+TGG | 0.526579 | 2_4:-60598288 | None:intergenic |
| TGCTGGAGATGATGCTCCAA+GGG | 0.531721 | 2_4:+60598272 | Msa0339450:CDS |
| GGTGGTACTACTATGTTCCC+TGG | 0.534257 | 2_4:+60599387 | Msa0339450:CDS |
| GCAGGTATTGTACTGGACTC+TGG | 0.536986 | 2_4:+60598931 | Msa0339450:intron |
| CGATTAGCCTTTGGATTGAG+CGG | 0.541575 | 2_4:-60598534 | None:intergenic |
| GACCAGTGGTTGAATATCCT+CGG | 0.542292 | 2_4:-60597880 | None:intergenic |
| CGCCGAGGATATTCAACCAC+TGG | 0.542623 | 2_4:+60597878 | Msa0339450:CDS |
| AGTATTTATGTAATGTTAGA+CGG | 0.543570 | 2_4:+60599830 | Msa0339450:three_prime_UTR |
| CCCAAGCAGCATGAAGATCA+AGG | 0.543751 | 2_4:+60599449 | Msa0339450:CDS |
| AATATGTGCAGGTATTGTAC+TGG | 0.544002 | 2_4:+60598924 | Msa0339450:intron |
| TCGTTCTTAGAACTTAGAAT+CGG | 0.545558 | 2_4:+60597241 | Msa0339450:five_prime_UTR |
| TCCTTCGTCTTGATTTAGCA+GGG | 0.546953 | 2_4:+60599010 | Msa0339450:CDS |
| GAAGGCTGGAAAAGAACCTC+AGG | 0.547727 | 2_4:-60599258 | None:intergenic |
| TGAAATTGTAAGAGATGTGA+AGG | 0.550481 | 2_4:+60599104 | Msa0339450:CDS |
| CGTGGTCGACCAACAATGCT+AGG | 0.552232 | 2_4:-60598303 | None:intergenic |
| ACATAGTAGTACCACCACTA+AGG | 0.559599 | 2_4:-60599380 | None:intergenic |
| TTGCTGGAGATGATGCTCCA+AGG | 0.560432 | 2_4:+60598271 | Msa0339450:CDS |
| GACGAAGGATAGCATGTGGA+AGG | 0.560879 | 2_4:-60598996 | None:intergenic |
| AAGCTCTTGCTCAAAATCAA+GGG | 0.566750 | 2_4:-60599145 | None:intergenic |
| ACCACGCCACACTGGTGTGA+TGG | 0.574183 | 2_4:+60598320 | Msa0339450:CDS |
| CTAAAATATCCAATTGAGCA+TGG | 0.574515 | 2_4:+60598408 | Msa0339450:CDS |
| TGTGGCCCCAGAGGAGCACC+CGG | 0.576326 | 2_4:+60598494 | Msa0339450:CDS |
| TGAATAGCAACATACATAGC+AGG | 0.576757 | 2_4:-60598597 | None:intergenic |
| CGCCACACTGGTGTGATGGT+TGG | 0.577341 | 2_4:+60598324 | Msa0339450:CDS |
| GTGCTTCAGTGAGCAAAACC+GGG | 0.578129 | 2_4:-60598512 | None:intergenic |
| GCTTCCATTCCAACCATGGA+AGG | 0.580286 | 2_4:-60599276 | None:intergenic |
| GGTGCTCCTCTGGGGCCACA+CGG | 0.580962 | 2_4:-60598491 | None:intergenic |
| AACAGCTTCCATTCCAACCA+TGG | 0.591828 | 2_4:-60599280 | None:intergenic |
| GAGCAAGGAAATTACCGCGT+TGG | 0.592403 | 2_4:+60599425 | Msa0339450:CDS |
| GGAAATATTGTCCTTAGTGG+TGG | 0.594437 | 2_4:+60599369 | Msa0339450:CDS |
| AGTGAAAGAATAACCACGCT+CGG | 0.601145 | 2_4:-60599067 | None:intergenic |
| AGGACCAGATTCATCGTACT+CGG | 0.601521 | 2_4:-60599689 | None:intergenic |
| TGTGAGTAACTGGGATGACA+TGG | 0.601686 | 2_4:+60598434 | Msa0339450:CDS |
| TGAGCGTTTCCGTTGTCCTG+AGG | 0.602279 | 2_4:+60599242 | Msa0339450:CDS |
| ATTGTACTGGACTCTGGAGA+TGG | 0.605459 | 2_4:+60598937 | Msa0339450:CDS |
| TCAATAGCGACTTGCAACGA+TGG | 0.608358 | 2_4:+60599787 | Msa0339450:three_prime_UTR |
| GTTGGTCGACCACGCCACAC+TGG | 0.610992 | 2_4:+60598312 | Msa0339450:CDS |
| ATGGTTGGAATGGAAGCTGT+TGG | 0.612805 | 2_4:+60599282 | Msa0339450:CDS |
| TGAAGCACCGCTCAATCCAA+AGG | 0.625231 | 2_4:+60598527 | Msa0339450:CDS |
| CATGCTGCTTGGGGCCAACG+CGG | 0.625414 | 2_4:-60599439 | None:intergenic |
| CATTGCTGACAGAATGAGCA+AGG | 0.625589 | 2_4:+60599410 | Msa0339450:CDS |
| ACCATCACACCAGTGTGGCG+TGG | 0.628231 | 2_4:-60598321 | None:intergenic |
| CTGTGATAATGGAACAGGAA+TGG | 0.632340 | 2_4:+60597902 | Msa0339450:CDS |
| TTGAAAGATAGTCGTGAACG+TGG | 0.634011 | 2_4:+60597270 | Msa0339450:five_prime_UTR |
| ACTAGCATAGAGCGATAGAA+CGG | 0.636987 | 2_4:-60598622 | None:intergenic |
| CAAAACCGGGTGCTCCTCTG+GGG | 0.638105 | 2_4:-60598499 | None:intergenic |
| GTTCTATCGCTCTATGCTAG+TGG | 0.639915 | 2_4:+60598624 | Msa0339450:CDS |
| TCAAGACGAAGGATAGCATG+TGG | 0.640472 | 2_4:-60599000 | None:intergenic |
| AAGAGTTATGAACTTCCTGA+TGG | 0.641331 | 2_4:+60599198 | Msa0339450:CDS |
| TCATTCTGTCAGCAATGCCA+GGG | 0.641800 | 2_4:-60599404 | None:intergenic |
| ACTGGTGTGATGGTTGGCAT+GGG | 0.642331 | 2_4:+60598330 | Msa0339450:CDS |
| TGAACTCCGTGTGGCCCCAG+AGG | 0.648993 | 2_4:+60598485 | Msa0339450:CDS |
| GCTGCAGAATGGTTTGGTGT+AGG | 0.651370 | 2_4:+60599742 | Msa0339450:three_prime_UTR |
| AAAGACAATGGCAGACGCCG+AGG | 0.653794 | 2_4:+60597863 | Msa0339450:exon |
| GGAAAAGAACCTCAGGACAA+CGG | 0.659232 | 2_4:-60599251 | None:intergenic |
| ACGAAGGATAGCATGTGGAA+GGG | 0.659324 | 2_4:-60598995 | None:intergenic |
| GATGAAGCTCAGTCCAAGCG+TGG | 0.663966 | 2_4:+60598375 | Msa0339450:CDS |
| AATGCAGATGTGGATTGCAA+AGG | 0.664746 | 2_4:+60599666 | Msa0339450:intron |
| GTGTGATGTTGATATCAGAA+AGG | 0.677167 | 2_4:+60599338 | Msa0339450:CDS |
| TTAGACGGTGAAGTCAGCGA+AGG | 0.681518 | 2_4:+60599845 | Msa0339450:three_prime_UTR |
| GTTCCATTATCACAGACCAG+TGG | 0.693343 | 2_4:-60597894 | None:intergenic |
| TGCCAACCATCACACCAGTG+TGG | 0.706399 | 2_4:-60598326 | None:intergenic |
| GCATGGTATTGTGAGTAACT+GGG | 0.709006 | 2_4:+60598425 | Msa0339450:CDS |
| GCCCTGCTAAATCAAGACGA+AGG | 0.714666 | 2_4:-60599011 | None:intergenic |
| CTTCATAAATAGGCACAGTG+TGG | 0.723850 | 2_4:-60598966 | None:intergenic |
| AAGCAGCATGAAGATCAAGG+TGG | 0.767710 | 2_4:+60599452 | Msa0339450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTCTTTAAATTGTTT+TGG | + | chr2_4:60597778-60597797 | Msa0339450:intron | 15.0% |
| !! | TTTGTTGATATTCATGTATA+TGG | + | chr2_4:60597455-60597474 | Msa0339450:intron | 20.0% |
| !!! | CATTCTAAGTTTTTTTATAC+TGG | + | chr2_4:60598710-60598729 | Msa0339450:intron | 20.0% |
| !! | AAAGAATTGTTCTATATCTA+TGG | + | chr2_4:60598863-60598882 | Msa0339450:intron | 20.0% |
| !! | ATGTCAAAAAAAGAATTCTA+AGG | - | chr2_4:60599597-60599616 | None:intergenic | 20.0% |
| !!! | TTTGACATGTTTGATTTATT+TGG | + | chr2_4:60599609-60599628 | Msa0339450:intron | 20.0% |
| !!! | TTGACATGTTTGATTTATTT+GGG | + | chr2_4:60599610-60599629 | Msa0339450:intron | 20.0% |
| !! | AGTATTTATGTAATGTTAGA+CGG | + | chr2_4:60599830-60599849 | Msa0339450:three_prime_UTR | 20.0% |
| !!! | ACATTTTTTGTTGCTTTCAA+CGG | + | chr2_4:60597353-60597372 | Msa0339450:five_prime_UTR | 25.0% |
| !!! | ACGAGTTTTATTTGATATGT+TGG | + | chr2_4:60597550-60597569 | Msa0339450:intron | 25.0% |
| ! | TTATACACGCTATATACATA+CGG | - | chr2_4:60597609-60597628 | None:intergenic | 25.0% |
| ! | TTAGATTACCATAACATGTT+TGG | - | chr2_4:60597685-60597704 | None:intergenic | 25.0% |
| !! | TATCTTTTCTGTTTTCTCTT+CGG | + | chr2_4:60597989-60598008 | Msa0339450:intron | 25.0% |
| !! | AGTACTAAATGTTGTTGTTA+AGG | + | chr2_4:60598084-60598103 | Msa0339450:intron | 25.0% |
| !! | ACACATTAGTTTCTTAAATC+GGG | - | chr2_4:60598672-60598691 | None:intergenic | 25.0% |
| !! | GACACATTAGTTTCTTAAAT+CGG | - | chr2_4:60598673-60598692 | None:intergenic | 25.0% |
| !!! | TCAGTTTGTTAATGGATATA+TGG | + | chr2_4:60598762-60598781 | Msa0339450:intron | 25.0% |
| !!! | TATTTTTGAAAATGCAGATG+TGG | + | chr2_4:60599656-60599675 | Msa0339450:intron | 25.0% |
| TCGTTCTTAGAACTTAGAAT+CGG | + | chr2_4:60597241-60597260 | Msa0339450:five_prime_UTR | 30.0% | |
| ACGGATAAATGAAAACTTGT+GGG | - | chr2_4:60597590-60597609 | None:intergenic | 30.0% | |
| TACGGATAAATGAAAACTTG+TGG | - | chr2_4:60597591-60597610 | None:intergenic | 30.0% | |
| AAGTGTAAGAATAACTAGTG+AGG | + | chr2_4:60597713-60597732 | Msa0339450:intron | 30.0% | |
| !!! | AATTGTTTTGGAATAGCACT+TGG | + | chr2_4:60597790-60597809 | Msa0339450:intron | 30.0% |
| ATGTACTAAGAAGGAGTTTA+TGG | + | chr2_4:60597825-60597844 | Msa0339450:intron | 30.0% | |
| TCACAGCAAATTAGTAGAAA+GGG | - | chr2_4:60598214-60598233 | None:intergenic | 30.0% | |
| TTCACAGCAAATTAGTAGAA+AGG | - | chr2_4:60598215-60598234 | None:intergenic | 30.0% | |
| ! | CATTGTGATTTGCAACATTT+AGG | + | chr2_4:60598242-60598261 | Msa0339450:intron | 30.0% |
| CTAAAATATCCAATTGAGCA+TGG | + | chr2_4:60598408-60598427 | Msa0339450:CDS | 30.0% | |
| AAAAATAAGAATGCGTTGCA+AGG | + | chr2_4:60598738-60598757 | Msa0339450:intron | 30.0% | |
| ATGAAGTCTAGTTAAGTTCA+TGG | + | chr2_4:60598806-60598825 | Msa0339450:intron | 30.0% | |
| TGAAGTCTAGTTAAGTTCAT+GGG | + | chr2_4:60598807-60598826 | Msa0339450:intron | 30.0% | |
| TAGTTAAGTTCATGGGAAAA+AGG | + | chr2_4:60598814-60598833 | Msa0339450:intron | 30.0% | |
| AGTTAAGTTCATGGGAAAAA+GGG | + | chr2_4:60598815-60598834 | Msa0339450:intron | 30.0% | |
| AAGGGGAAAATAGACAAAAA+TGG | + | chr2_4:60598833-60598852 | Msa0339450:intron | 30.0% | |
| AACTCTATATGAATATGTGC+AGG | + | chr2_4:60598913-60598932 | Msa0339450:intron | 30.0% | |
| TGAAATTGTAAGAGATGTGA+AGG | + | chr2_4:60599104-60599123 | Msa0339450:CDS | 30.0% | |
| TATGGAAATATTGTCCTTAG+TGG | + | chr2_4:60599366-60599385 | Msa0339450:CDS | 30.0% | |
| ! | CATTTTCTGTGTACAATTGA+AGG | - | chr2_4:60599712-60599731 | None:intergenic | 30.0% |
| AAGAACGACATTAACGTTGT+TGG | - | chr2_4:60597229-60597248 | None:intergenic | 35.0% | |
| ACGTACGTAAAAACCTGAAA+TGG | - | chr2_4:60597420-60597439 | None:intergenic | 35.0% | |
| GTATTGTGCCAAACATGTTA+TGG | + | chr2_4:60597674-60597693 | Msa0339450:intron | 35.0% | |
| CGTCTTTCAATGTACTAAGA+AGG | + | chr2_4:60597816-60597835 | Msa0339450:intron | 35.0% | |
| !! | GTGCAGATTTTGAAAGACAA+TGG | + | chr2_4:60597851-60597870 | Msa0339450:intron | 35.0% |
| TAATGGAACAGGAATGGTTA+AGG | + | chr2_4:60597908-60597927 | Msa0339450:CDS | 35.0% | |
| ! | TTTTTCCTGAAGAAGCGATT+TGG | + | chr2_4:60597961-60597980 | Msa0339450:intron | 35.0% |
| GGACAAAAAGATGCATATGT+TGG | + | chr2_4:60598351-60598370 | Msa0339450:CDS | 35.0% | |
| !!! | ATTTTCTCACGATTAGCCTT+TGG | - | chr2_4:60598546-60598565 | None:intergenic | 35.0% |
| TGAATAGCAACATACATAGC+AGG | - | chr2_4:60598600-60598619 | None:intergenic | 35.0% | |
| ! | TGCTATGTATGTTGCTATTC+AGG | + | chr2_4:60598599-60598618 | Msa0339450:CDS | 35.0% |
| TAAATCGGGAAATGACTAAC+CGG | - | chr2_4:60598658-60598677 | None:intergenic | 35.0% | |
| !! | TGCAAGGTTCAGTTTGTTAA+TGG | + | chr2_4:60598754-60598773 | Msa0339450:intron | 35.0% |
| GTTAAGTTCATGGGAAAAAG+GGG | + | chr2_4:60598816-60598835 | Msa0339450:intron | 35.0% | |
| ! | AATATGTGCAGGTATTGTAC+TGG | + | chr2_4:60598924-60598943 | Msa0339450:intron | 35.0% |
| AGGGCATATCCTTCATAAAT+AGG | - | chr2_4:60598979-60598998 | None:intergenic | 35.0% | |
| ATCTCTTACAATTTCACGCT+CGG | - | chr2_4:60599100-60599119 | None:intergenic | 35.0% | |
| AAGCTCTTGCTCAAAATCAA+GGG | - | chr2_4:60599148-60599167 | None:intergenic | 35.0% | |
| AAGAGTTATGAACTTCCTGA+TGG | + | chr2_4:60599198-60599217 | Msa0339450:CDS | 35.0% | |
| GTGTGATGTTGATATCAGAA+AGG | + | chr2_4:60599338-60599357 | Msa0339450:CDS | 35.0% | |
| GATATCAGAAAGGACTTGTA+TGG | + | chr2_4:60599348-60599367 | Msa0339450:CDS | 35.0% | |
| AGAAAATACAGTGTCTGGAT+TGG | + | chr2_4:60599489-60599508 | Msa0339450:CDS | 35.0% | |
| ! | TTCTCTTAGCACTTTTCAAC+AGG | + | chr2_4:60599527-60599546 | Msa0339450:CDS | 35.0% |
| TTGAAAGATAGTCGTGAACG+TGG | + | chr2_4:60597270-60597289 | Msa0339450:five_prime_UTR | 40.0% | |
| !! | CTGTGATAATGGAACAGGAA+TGG | + | chr2_4:60597902-60597921 | Msa0339450:CDS | 40.0% |
| ! | TCTTTTCTACGATCTGCGAT+TGG | + | chr2_4:60598158-60598177 | Msa0339450:intron | 40.0% |
| ! | GTGATTTGCAACATTTAGGC+TGG | + | chr2_4:60598246-60598265 | Msa0339450:intron | 40.0% |
| AACATTTAGGCTGGATTTGC+TGG | + | chr2_4:60598255-60598274 | Msa0339450:intron | 40.0% | |
| TAGAGTCAATATACCACGCT+TGG | - | chr2_4:60598391-60598410 | None:intergenic | 40.0% | |
| CTCACAATACCATGCTCAAT+TGG | - | chr2_4:60598420-60598439 | None:intergenic | 40.0% | |
| AGCATGGTATTGTGAGTAAC+TGG | + | chr2_4:60598424-60598443 | Msa0339450:CDS | 40.0% | |
| GCATGGTATTGTGAGTAACT+GGG | + | chr2_4:60598425-60598444 | Msa0339450:CDS | 40.0% | |
| GGGATGACATGGAGAAAATT+TGG | + | chr2_4:60598445-60598464 | Msa0339450:CDS | 40.0% | |
| CACACGGAGTTCATTGTAAA+AGG | - | chr2_4:60598478-60598497 | None:intergenic | 40.0% | |
| ! | CTTTTACAATGAACTCCGTG+TGG | + | chr2_4:60598476-60598495 | Msa0339450:CDS | 40.0% |
| ACTAGCATAGAGCGATAGAA+CGG | - | chr2_4:60598625-60598644 | None:intergenic | 40.0% | |
| CTTCATAAATAGGCACAGTG+TGG | - | chr2_4:60598969-60598988 | None:intergenic | 40.0% | |
| CACACTGTGCCTATTTATGA+AGG | + | chr2_4:60598967-60598986 | Msa0339450:CDS | 40.0% | |
| ATCCTTCGTCTTGATTTAGC+AGG | + | chr2_4:60599009-60599028 | Msa0339450:CDS | 40.0% | |
| TCCTTCGTCTTGATTTAGCA+GGG | + | chr2_4:60599010-60599029 | Msa0339450:CDS | 40.0% | |
| !! | TTTTCATCAAGGCATCAGTG+AGG | - | chr2_4:60599041-60599060 | None:intergenic | 40.0% |
| ! | CTCGGTAAGGATTTTCATCA+AGG | - | chr2_4:60599052-60599071 | None:intergenic | 40.0% |
| AGTGAAAGAATAACCACGCT+CGG | - | chr2_4:60599070-60599089 | None:intergenic | 40.0% | |
| CAAGCTCTTGCTCAAAATCA+AGG | - | chr2_4:60599149-60599168 | None:intergenic | 40.0% | |
| GGAAATATTGTCCTTAGTGG+TGG | + | chr2_4:60599369-60599388 | Msa0339450:CDS | 40.0% | |
| ACATAGTAGTACCACCACTA+AGG | - | chr2_4:60599383-60599402 | None:intergenic | 40.0% | |
| ! | CAGACACTGTATTTTCTCTC+GGG | - | chr2_4:60599486-60599505 | None:intergenic | 40.0% |
| ! | CCAGACACTGTATTTTCTCT+CGG | - | chr2_4:60599487-60599506 | None:intergenic | 40.0% |
| ! | AAATACAGTGTCTGGATTGG+TGG | + | chr2_4:60599492-60599511 | Msa0339450:CDS | 40.0% |
| AGTGCTAAGAGAAGCTAAGA+TGG | - | chr2_4:60599520-60599539 | None:intergenic | 40.0% | |
| AAGGCATGCATAAATACACG+CGG | - | chr2_4:60599578-60599597 | None:intergenic | 40.0% | |
| ! | AATGCAGATGTGGATTGCAA+AGG | + | chr2_4:60599666-60599685 | Msa0339450:intron | 40.0% |
| !!! | GCTTTTAGAATGCTGCAGAA+TGG | + | chr2_4:60599731-60599750 | Msa0339450:exon | 40.0% |
| TAGAATGCTGCAGAATGGTT+TGG | + | chr2_4:60599736-60599755 | Msa0339450:exon | 40.0% | |
| ! | CTCTTTTGACGCACCATTTC+AGG | + | chr2_4:60597404-60597423 | Msa0339450:five_prime_UTR | 45.0% |
| TGATATGTTGGAGCTCGCAT+TGG | + | chr2_4:60597562-60597581 | Msa0339450:intron | 45.0% | |
| GACCAGTGGTTGAATATCCT+CGG | - | chr2_4:60597883-60597902 | None:intergenic | 45.0% | |
| ! | CAACCACTGGTCTGTGATAA+TGG | + | chr2_4:60597891-60597910 | Msa0339450:CDS | 45.0% |
| GTTCCATTATCACAGACCAG+TGG | - | chr2_4:60597897-60597916 | None:intergenic | 45.0% | |
| !! | CTGGTCTGTGATAATGGAAC+AGG | + | chr2_4:60597897-60597916 | Msa0339450:CDS | 45.0% |
| CATAGCCAAATCGCTTCTTC+AGG | - | chr2_4:60597969-60597988 | None:intergenic | 45.0% | |
| GCTGTGTTTCCTAGCATTGT+TGG | + | chr2_4:60598294-60598313 | Msa0339450:CDS | 45.0% | |
| TGTGAGTAACTGGGATGACA+TGG | + | chr2_4:60598434-60598453 | Msa0339450:CDS | 45.0% | |
| !! | CGATTAGCCTTTGGATTGAG+CGG | - | chr2_4:60598537-60598556 | None:intergenic | 45.0% |
| GTTCTATCGCTCTATGCTAG+TGG | + | chr2_4:60598624-60598643 | Msa0339450:CDS | 45.0% | |
| TATGCTAGTGGTCGAACAAC+CGG | + | chr2_4:60598636-60598655 | Msa0339450:CDS | 45.0% | |
| ! | ATTGTACTGGACTCTGGAGA+TGG | + | chr2_4:60598937-60598956 | Msa0339450:CDS | 45.0% |
| ACGAAGGATAGCATGTGGAA+GGG | - | chr2_4:60598998-60599017 | None:intergenic | 45.0% | |
| TCAAGACGAAGGATAGCATG+TGG | - | chr2_4:60599003-60599022 | None:intergenic | 45.0% | |
| ATGAAAATCCTTACCGAGCG+TGG | + | chr2_4:60599054-60599073 | Msa0339450:CDS | 45.0% | |
| AAGAATAACCACGCTCGGTA+AGG | - | chr2_4:60599065-60599084 | None:intergenic | 45.0% | |
| ATAGTGATGATCTGGCCATC+AGG | - | chr2_4:60599216-60599235 | None:intergenic | 45.0% | |
| GATGGCCAGATCATCACTAT+TGG | + | chr2_4:60599216-60599235 | Msa0339450:CDS | 45.0% | |
| CAGCTCCAATAGTGATGATC+TGG | - | chr2_4:60599224-60599243 | None:intergenic | 45.0% | |
| GGAAAAGAACCTCAGGACAA+CGG | - | chr2_4:60599254-60599273 | None:intergenic | 45.0% | |
| AACAGCTTCCATTCCAACCA+TGG | - | chr2_4:60599283-60599302 | None:intergenic | 45.0% | |
| ATGGTTGGAATGGAAGCTGT+TGG | + | chr2_4:60599282-60599301 | Msa0339450:CDS | 45.0% | |
| TCATTCTGTCAGCAATGCCA+GGG | - | chr2_4:60599407-60599426 | None:intergenic | 45.0% | |
| CATTGCTGACAGAATGAGCA+AGG | + | chr2_4:60599410-60599429 | Msa0339450:CDS | 45.0% | |
| ! | CTTGATCTTCATGCTGCTTG+GGG | - | chr2_4:60599451-60599470 | None:intergenic | 45.0% |
| ! | CCTTGATCTTCATGCTGCTT+GGG | - | chr2_4:60599452-60599471 | None:intergenic | 45.0% |
| ACCTTGATCTTCATGCTGCT+TGG | - | chr2_4:60599453-60599472 | None:intergenic | 45.0% | |
| AAGCAGCATGAAGATCAAGG+TGG | + | chr2_4:60599452-60599471 | Msa0339450:CDS | 45.0% | |
| ! | ACACTGTATTTTCTCTCGGG+TGG | - | chr2_4:60599483-60599502 | None:intergenic | 45.0% |
| CCGAGAGAAAATACAGTGTC+TGG | + | chr2_4:60599484-60599503 | Msa0339450:CDS | 45.0% | |
| CGCGGACAATGTGAGTATAT+CGG | - | chr2_4:60599560-60599579 | None:intergenic | 45.0% | |
| AGGACCAGATTCATCGTACT+CGG | - | chr2_4:60599692-60599711 | None:intergenic | 45.0% | |
| TCAATAGCGACTTGCAACGA+TGG | + | chr2_4:60599787-60599806 | Msa0339450:three_prime_UTR | 45.0% | |
| TCAACGGTTGCAGCTGAGAT+AGG | + | chr2_4:60597369-60597388 | Msa0339450:five_prime_UTR | 50.0% | |
| TTGCTGGAGATGATGCTCCA+AGG | + | chr2_4:60598271-60598290 | Msa0339450:CDS | 50.0% | |
| TGCTGGAGATGATGCTCCAA+GGG | + | chr2_4:60598272-60598291 | Msa0339450:CDS | 50.0% | |
| ATGCTAGGAAACACAGCCCT+TGG | - | chr2_4:60598291-60598310 | None:intergenic | 50.0% | |
| ACTGGTGTGATGGTTGGCAT+GGG | + | chr2_4:60598330-60598349 | Msa0339450:CDS | 50.0% | |
| GTGCTTCAGTGAGCAAAACC+GGG | - | chr2_4:60598515-60598534 | None:intergenic | 50.0% | |
| GGTGCTTCAGTGAGCAAAAC+CGG | - | chr2_4:60598516-60598535 | None:intergenic | 50.0% | |
| !! | TGAAGCACCGCTCAATCCAA+AGG | + | chr2_4:60598527-60598546 | Msa0339450:CDS | 50.0% |
| ! | GCAGGTATTGTACTGGACTC+TGG | + | chr2_4:60598931-60598950 | Msa0339450:intron | 50.0% |
| GACGAAGGATAGCATGTGGA+AGG | - | chr2_4:60598999-60599018 | None:intergenic | 50.0% | |
| GCCCTGCTAAATCAAGACGA+AGG | - | chr2_4:60599014-60599033 | None:intergenic | 50.0% | |
| TACAATTTCACGCTCGGCTG+TGG | - | chr2_4:60599094-60599113 | None:intergenic | 50.0% | |
| GAAGGCTGGAAAAGAACCTC+AGG | - | chr2_4:60599261-60599280 | None:intergenic | 50.0% | |
| ! | GGTTCTTTTCCAGCCTTCCA+TGG | + | chr2_4:60599263-60599282 | Msa0339450:CDS | 50.0% |
| ! | CTTTTCCAGCCTTCCATGGT+TGG | + | chr2_4:60599267-60599286 | Msa0339450:CDS | 50.0% |
| GCTTCCATTCCAACCATGGA+AGG | - | chr2_4:60599279-60599298 | None:intergenic | 50.0% | |
| GGTGGTACTACTATGTTCCC+TGG | + | chr2_4:60599387-60599406 | Msa0339450:CDS | 50.0% | |
| CTCATTCTGTCAGCAATGCC+AGG | - | chr2_4:60599408-60599427 | None:intergenic | 50.0% | |
| GAGCAAGGAAATTACCGCGT+TGG | + | chr2_4:60599425-60599444 | Msa0339450:CDS | 50.0% | |
| CCCAAGCAGCATGAAGATCA+AGG | + | chr2_4:60599449-60599468 | Msa0339450:CDS | 50.0% | |
| AAGGCCGAGTACGATGAATC+TGG | + | chr2_4:60599685-60599704 | Msa0339450:CDS | 50.0% | |
| !! | GCTGCAGAATGGTTTGGTGT+AGG | + | chr2_4:60599742-60599761 | Msa0339450:three_prime_UTR | 50.0% |
| TTAGACGGTGAAGTCAGCGA+AGG | + | chr2_4:60599845-60599864 | Msa0339450:three_prime_UTR | 50.0% | |
| AAAGACAATGGCAGACGCCG+AGG | + | chr2_4:60597863-60597882 | Msa0339450:exon | 55.0% | |
| CGCCGAGGATATTCAACCAC+TGG | + | chr2_4:60597878-60597897 | Msa0339450:CDS | 55.0% | |
| CGTGGTCGACCAACAATGCT+AGG | - | chr2_4:60598306-60598325 | None:intergenic | 55.0% | |
| TGCCAACCATCACACCAGTG+TGG | - | chr2_4:60598329-60598348 | None:intergenic | 55.0% | |
| CACTGGTGTGATGGTTGGCA+TGG | + | chr2_4:60598329-60598348 | Msa0339450:CDS | 55.0% | |
| GATGAAGCTCAGTCCAAGCG+TGG | + | chr2_4:60598375-60598394 | Msa0339450:CDS | 55.0% | |
| TGAGCGTTTCCGTTGTCCTG+AGG | + | chr2_4:60599242-60599261 | Msa0339450:CDS | 55.0% | |
| CCATTCCAACCATGGAAGGC+TGG | - | chr2_4:60599275-60599294 | None:intergenic | 55.0% | |
| CCAGCCTTCCATGGTTGGAA+TGG | + | chr2_4:60599272-60599291 | Msa0339450:CDS | 55.0% | |
| ACCACGCCACACTGGTGTGA+TGG | + | chr2_4:60598320-60598339 | Msa0339450:CDS | 60.0% | |
| ACCATCACACCAGTGTGGCG+TGG | - | chr2_4:60598324-60598343 | None:intergenic | 60.0% | |
| CGCCACACTGGTGTGATGGT+TGG | + | chr2_4:60598324-60598343 | Msa0339450:CDS | 60.0% | |
| CAAAACCGGGTGCTCCTCTG+GGG | - | chr2_4:60598502-60598521 | None:intergenic | 60.0% | |
| GCAAAACCGGGTGCTCCTCT+GGG | - | chr2_4:60598503-60598522 | None:intergenic | 60.0% | |
| AGCAAAACCGGGTGCTCCTC+TGG | - | chr2_4:60598504-60598523 | None:intergenic | 60.0% | |
| GTTGGTCGACCACGCCACAC+TGG | + | chr2_4:60598312-60598331 | Msa0339450:CDS | 65.0% | |
| TGAACTCCGTGTGGCCCCAG+AGG | + | chr2_4:60598485-60598504 | Msa0339450:CDS | 65.0% | |
| ! | CATGCTGCTTGGGGCCAACG+CGG | - | chr2_4:60599442-60599461 | None:intergenic | 65.0% |
| !! | GGTGCTCCTCTGGGGCCACA+CGG | - | chr2_4:60598494-60598513 | None:intergenic | 70.0% |
| !! | TGTGGCCCCAGAGGAGCACC+CGG | + | chr2_4:60598494-60598513 | Msa0339450:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 60597209 | 60599915 | 60597209 | ID=Msa0339450;Name=Msa0339450 |
| chr2_4 | mRNA | 60597209 | 60599915 | 60597209 | ID=Msa0339450-mRNA-1;Parent=Msa0339450;Name=Msa0339450-mRNA-1;_AED=0.06;_eAED=0.06;_QI=230|1|1|1|0.75|0.6|5|177|377 |
| chr2_4 | exon | 60597209 | 60597425 | 60597209 | ID=Msa0339450-mRNA-1:exon:18863;Parent=Msa0339450-mRNA-1 |
| chr2_4 | exon | 60597857 | 60597929 | 60597857 | ID=Msa0339450-mRNA-1:exon:18864;Parent=Msa0339450-mRNA-1 |
| chr2_4 | exon | 60598264 | 60598657 | 60598264 | ID=Msa0339450-mRNA-1:exon:18865;Parent=Msa0339450-mRNA-1 |
| chr2_4 | exon | 60598935 | 60599548 | 60598935 | ID=Msa0339450-mRNA-1:exon:18866;Parent=Msa0339450-mRNA-1 |
| chr2_4 | exon | 60599673 | 60599915 | 60599673 | ID=Msa0339450-mRNA-1:exon:18867;Parent=Msa0339450-mRNA-1 |
| chr2_4 | five_prime_UTR | 60597209 | 60597425 | 60597209 | ID=Msa0339450-mRNA-1:five_prime_utr;Parent=Msa0339450-mRNA-1 |
| chr2_4 | five_prime_UTR | 60597857 | 60597869 | 60597857 | ID=Msa0339450-mRNA-1:five_prime_utr;Parent=Msa0339450-mRNA-1 |
| chr2_4 | CDS | 60597870 | 60597929 | 60597870 | ID=Msa0339450-mRNA-1:cds;Parent=Msa0339450-mRNA-1 |
| chr2_4 | CDS | 60598264 | 60598657 | 60598264 | ID=Msa0339450-mRNA-1:cds;Parent=Msa0339450-mRNA-1 |
| chr2_4 | CDS | 60598935 | 60599548 | 60598935 | ID=Msa0339450-mRNA-1:cds;Parent=Msa0339450-mRNA-1 |
| chr2_4 | CDS | 60599673 | 60599738 | 60599673 | ID=Msa0339450-mRNA-1:cds;Parent=Msa0339450-mRNA-1 |
| chr2_4 | three_prime_UTR | 60599739 | 60599915 | 60599739 | ID=Msa0339450-mRNA-1:three_prime_utr;Parent=Msa0339450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
