Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0302280 | XP_013465392.1 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 784 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0302280 | sp|P30171|ACT11_SOLTU | 97.347 | 377 | 10 | 0 | 1 | 377 | 1 | 377 | 0.0 | 771 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0302280 | A0A072VCE0 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 784 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004180 | Msa0302280 | 0.817417 | 3.333099e-52 | -8.615850e-47 |
| Msa0042950 | Msa0302280 | 0.806867 | 6.677613e-50 | -8.615850e-47 |
| Msa0047660 | Msa0302280 | 0.818252 | 2.159813e-52 | -8.615850e-47 |
| Msa0050310 | Msa0302280 | 0.805808 | 1.116331e-49 | -8.615850e-47 |
| Msa0075080 | Msa0302280 | 0.818894 | 1.544271e-52 | -8.615850e-47 |
| Msa0078170 | Msa0302280 | 0.801329 | 9.477784e-49 | -8.615850e-47 |
| Msa0079100 | Msa0302280 | 0.807053 | 6.100474e-50 | -8.615850e-47 |
| Msa0080100 | Msa0302280 | 0.801013 | 1.099987e-48 | -8.615850e-47 |
| Msa0085470 | Msa0302280 | 0.802317 | 5.942012e-49 | -8.615850e-47 |
| Msa0089700 | Msa0302280 | 0.802511 | 5.418924e-49 | -8.615850e-47 |
| Msa0122930 | Msa0302280 | 0.821058 | 4.941191e-53 | -8.615850e-47 |
| Msa0129820 | Msa0302280 | 0.808605 | 2.853115e-50 | -8.615850e-47 |
| Msa0145990 | Msa0302280 | 0.811591 | 6.484178e-51 | -8.615850e-47 |
| Msa0147070 | Msa0302280 | 0.801918 | 7.178714e-49 | -8.615850e-47 |
| Msa0162170 | Msa0302280 | 0.814011 | 1.914082e-51 | -8.615850e-47 |
| Msa0164310 | Msa0302280 | 0.808997 | 2.352152e-50 | -8.615850e-47 |
| Msa0167570 | Msa0302280 | 0.821594 | 3.716983e-53 | -8.615850e-47 |
| Msa0168470 | Msa0302280 | 0.806614 | 7.551990e-50 | -8.615850e-47 |
| Msa0175240 | Msa0302280 | 0.800466 | 1.422628e-48 | -8.615850e-47 |
| Msa0188670 | Msa0302280 | 0.803117 | 4.061611e-49 | -8.615850e-47 |
| Msa0213590 | Msa0302280 | 0.837284 | 5.691613e-57 | -8.615850e-47 |
| Msa0222850 | Msa0302280 | 0.951209 | 3.304221e-109 | -8.615850e-47 |
| Msa0261020 | Msa0302280 | 0.805490 | 1.301938e-49 | -8.615850e-47 |
| Msa0264290 | Msa0302280 | 0.960979 | 3.575902e-119 | -8.615850e-47 |
| Msa0279800 | Msa0302280 | 0.808107 | 3.642700e-50 | -8.615850e-47 |
| Msa0302280 | Msa0307820 | 0.805381 | 1.372218e-49 | -8.615850e-47 |
| Msa0302280 | Msa0339450 | 0.959273 | 2.919257e-117 | -8.615850e-47 |
| Msa0302280 | Msa0355990 | 0.818929 | 1.516620e-52 | -8.615850e-47 |
| Msa0302280 | Msa0386230 | 0.810823 | 9.516834e-51 | -8.615850e-47 |
| Msa0302280 | Msa0388010 | -0.805472 | 1.312911e-49 | -8.615850e-47 |
| Msa0302280 | Msa0388070 | -0.810309 | 1.229121e-50 | -8.615850e-47 |
| Msa0302280 | Msa0433090 | -0.801260 | 9.792657e-49 | -8.615850e-47 |
| Msa0302280 | Msa0460950 | -0.803798 | 2.934984e-49 | -8.615850e-47 |
| Msa0302280 | Msa0474630 | 0.811932 | 5.466197e-51 | -8.615850e-47 |
| Msa0302280 | Msa0474660 | 0.801040 | 1.086325e-48 | -8.615850e-47 |
| Msa0302280 | Msa0484590 | 0.831892 | 1.289900e-55 | -8.615850e-47 |
| Msa0302280 | Msa0490740 | 0.820108 | 8.164039e-53 | -8.615850e-47 |
| Msa0302280 | Msa0506700 | 0.805605 | 1.231313e-49 | -8.615850e-47 |
| Msa0302280 | Msa0524710 | -0.814306 | 1.647272e-51 | -8.615850e-47 |
| Msa0302280 | Msa0527950 | -0.805817 | 1.111535e-49 | -8.615850e-47 |
| Msa0302280 | Msa0597800 | -0.800164 | 1.638373e-48 | -8.615850e-47 |
| Msa0302280 | Msa0597820 | -0.807883 | 4.066088e-50 | -8.615850e-47 |
| Msa0302280 | Msa0608250 | 0.806368 | 8.510379e-50 | -8.615850e-47 |
| Msa0302280 | Msa0619450 | 0.816376 | 5.710546e-52 | -8.615850e-47 |
| Msa0302280 | Msa0619530 | 0.817857 | 2.652465e-52 | -8.615850e-47 |
| Msa0302280 | Msa0637590 | -0.805852 | 1.092667e-49 | -8.615850e-47 |
| Msa0302280 | Msa0659580 | 0.817867 | 2.639349e-52 | -8.615850e-47 |
| Msa0302280 | Msa0673620 | 0.805664 | 1.197001e-49 | -8.615850e-47 |
| Msa0302280 | Msa0691320 | 0.810791 | 9.671782e-51 | -8.615850e-47 |
| Msa0302280 | Msa0699200 | 0.801287 | 9.666584e-49 | -8.615850e-47 |
| Msa0302280 | Msa0739820 | 0.802939 | 4.421095e-49 | -8.615850e-47 |
| Msa0302280 | Msa0753590 | 0.808405 | 3.147557e-50 | -8.615850e-47 |
| Msa0302280 | Msa0868500 | 0.801151 | 1.030589e-48 | -8.615850e-47 |
| Msa0302280 | Msa0941410 | 0.800656 | 1.300827e-48 | -8.615850e-47 |
| Msa0302280 | Msa0941420 | 0.800161 | 1.640851e-48 | -8.615850e-47 |
| Msa0302280 | Msa0978540 | 0.808118 | 3.624165e-50 | -8.615850e-47 |
| Msa0302280 | Msa0985980 | 0.812005 | 5.270144e-51 | -8.615850e-47 |
| Msa0302280 | Msa1002550 | 0.812879 | 3.394689e-51 | -8.615850e-47 |
| Msa0302280 | Msa1102410 | 0.802027 | 6.816197e-49 | -8.615850e-47 |
| Msa0302280 | Msa1130150 | 0.813651 | 2.298081e-51 | -8.615850e-47 |
| Msa0302280 | Msa1137750 | -0.804709 | 1.896228e-49 | -8.615850e-47 |
| Msa0302280 | Msa1156100 | 0.802772 | 4.787246e-49 | -8.615850e-47 |
| Msa0302280 | Msa1163130 | 0.804547 | 2.050103e-49 | -8.615850e-47 |
| Msa0302280 | Msa1190670 | 0.802816 | 4.688345e-49 | -8.615850e-47 |
| Msa0302280 | Msa1197740 | 0.803927 | 2.759308e-49 | -8.615850e-47 |
| Msa0302280 | Msa1199700 | 0.806923 | 6.496213e-50 | -8.615850e-47 |
| Msa0302280 | Msa1203320 | 0.800367 | 1.490349e-48 | -8.615850e-47 |
| Msa0302280 | Msa1244940 | 0.803369 | 3.602320e-49 | -8.615850e-47 |
| Msa0302280 | Msa1287100 | 0.801168 | 1.022761e-48 | -8.615850e-47 |
| Msa0302280 | Msa1297490 | 0.813305 | 2.737709e-51 | -8.615850e-47 |
| Msa0302280 | Msa1297550 | 0.804637 | 1.963116e-49 | -8.615850e-47 |
| Msa0302280 | Msa1325260 | 0.813485 | 2.498940e-51 | -8.615850e-47 |
| Msa0302280 | Msa1390200 | -0.823650 | 1.235893e-53 | -8.615850e-47 |
| Msa0302280 | Msa1395200 | 0.808534 | 2.954558e-50 | -8.615850e-47 |
| Msa0302280 | Msa1403590 | 0.805589 | 1.240803e-49 | -8.615850e-47 |
| Msa0302280 | Msa1405040 | 0.808579 | 2.889804e-50 | -8.615850e-47 |
| Msa0302280 | Msa1437590 | -0.813891 | 2.034709e-51 | -8.615850e-47 |
| Msa0302280 | Msa1443280 | 0.802008 | 6.879145e-49 | -8.615850e-47 |
| Msa0302280 | Msa1462700 | 0.813182 | 2.912864e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0302280 | MtrunA17_Chr2g0328091 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 784 |
| Msa0302280 | MtrunA17_Chr1g0175391 | 98.674 | 377 | 5 | 0 | 1 | 377 | 1 | 377 | 0.0 | 776 |
| Msa0302280 | MtrunA17_Chr6g0448881 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 768 |
| Msa0302280 | MtrunA17_Chr7g0223901 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 768 |
| Msa0302280 | MtrunA17_Chr7g0258721 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 765 |
| Msa0302280 | MtrunA17_Chr3g0129641 | 94.960 | 377 | 19 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0302280 | MtrunA17_Chr2g0278591 | 93.634 | 377 | 24 | 0 | 1 | 377 | 1 | 377 | 0.0 | 752 |
| Msa0302280 | MtrunA17_Chr7g0224401 | 42.480 | 379 | 204 | 3 | 10 | 374 | 7 | 385 | 1.11e-118 | 349 |
| Msa0302280 | MtrunA17_Chr5g0427591 | 37.220 | 446 | 207 | 10 | 1 | 376 | 1 | 443 | 8.46e-94 | 287 |
| Msa0302280 | MtrunA17_Chr8g0361001 | 37.220 | 446 | 207 | 10 | 1 | 376 | 1 | 443 | 1.11e-93 | 287 |
| Msa0302280 | MtrunA17_Chr8g0381261 | 34.550 | 411 | 219 | 8 | 10 | 372 | 10 | 418 | 4.30e-72 | 231 |
| Msa0302280 | MtrunA17_Chr3g0089031 | 37.105 | 380 | 213 | 9 | 7 | 377 | 1 | 363 | 8.35e-68 | 218 |
| Msa0302280 | MtrunA17_Chr2g0305361 | 27.650 | 434 | 248 | 7 | 8 | 377 | 6 | 437 | 2.57e-56 | 190 |
| Msa0302280 | MtrunA17_Chr3g0080021 | 30.303 | 297 | 183 | 9 | 91 | 371 | 179 | 467 | 1.66e-40 | 149 |
| Msa0302280 | MtrunA17_Chr8g0369101 | 31.058 | 293 | 175 | 10 | 91 | 366 | 187 | 469 | 6.18e-36 | 136 |
| Msa0302280 | MtrunA17_Chr3g0111971 | 28.968 | 252 | 160 | 7 | 9 | 245 | 21 | 268 | 7.47e-22 | 97.4 |
| Msa0302280 | MtrunA17_Chr3g0111971 | 33.607 | 122 | 78 | 2 | 250 | 368 | 586 | 707 | 3.60e-16 | 80.1 |
| Msa0302280 | MtrunA17_Chr8g0336071 | 40.000 | 95 | 57 | 0 | 105 | 199 | 1 | 95 | 3.19e-19 | 82.0 |
| Msa0302280 | MtrunA17_Chr8g0336061 | 43.478 | 92 | 39 | 2 | 241 | 319 | 12 | 103 | 4.07e-19 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0302280 | AT3G12110.1 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 765 |
| Msa0302280 | AT3G53750.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0302280 | AT3G53750.2 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0302280 | AT2G37620.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0302280 | AT2G37620.3 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0302280 | AT2G37620.2 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0302280 | AT2G37620.4 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0302280 | AT5G59370.2 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0302280 | AT5G59370.1 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0302280 | AT3G46520.2 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0302280 | AT3G46520.1 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0302280 | AT5G09810.1 | 94.960 | 377 | 19 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa0302280 | AT1G49240.1 | 92.573 | 377 | 28 | 0 | 1 | 377 | 1 | 377 | 0.0 | 745 |
| Msa0302280 | AT3G18780.2 | 92.308 | 377 | 29 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| Msa0302280 | AT3G18780.3 | 92.308 | 377 | 29 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| Msa0302280 | AT3G18780.1 | 92.201 | 359 | 28 | 0 | 1 | 359 | 1 | 359 | 0.0 | 703 |
| Msa0302280 | AT2G42100.1 | 83.967 | 368 | 59 | 0 | 10 | 377 | 11 | 378 | 0.0 | 673 |
| Msa0302280 | AT2G42090.1 | 70.000 | 370 | 106 | 1 | 7 | 376 | 1 | 365 | 0.0 | 564 |
| Msa0302280 | AT2G42170.1 | 77.108 | 332 | 73 | 1 | 46 | 377 | 1 | 329 | 0.0 | 556 |
| Msa0302280 | AT2G42170.3 | 77.108 | 332 | 73 | 1 | 46 | 377 | 1 | 329 | 0.0 | 556 |
| Msa0302280 | AT2G42170.4 | 76.923 | 312 | 69 | 1 | 46 | 357 | 1 | 309 | 0.0 | 518 |
| Msa0302280 | AT2G42170.2 | 76.923 | 312 | 69 | 1 | 46 | 357 | 1 | 309 | 0.0 | 518 |
| Msa0302280 | AT2G42170.5 | 76.991 | 226 | 49 | 1 | 152 | 377 | 9 | 231 | 2.26e-130 | 373 |
| Msa0302280 | AT3G27000.1 | 43.536 | 379 | 200 | 4 | 10 | 374 | 7 | 385 | 5.07e-121 | 355 |
| Msa0302280 | AT1G18450.1 | 37.472 | 443 | 207 | 9 | 1 | 376 | 1 | 440 | 1.55e-95 | 292 |
| Msa0302280 | AT1G13180.1 | 34.223 | 412 | 219 | 9 | 10 | 372 | 9 | 417 | 2.85e-72 | 232 |
| Msa0302280 | AT3G60830.1 | 37.467 | 379 | 213 | 9 | 7 | 377 | 1 | 363 | 6.00e-67 | 216 |
| Msa0302280 | AT3G33520.1 | 30.166 | 421 | 236 | 7 | 10 | 377 | 5 | 420 | 5.60e-58 | 194 |
| Msa0302280 | AT5G56180.3 | 31.338 | 284 | 170 | 9 | 91 | 358 | 50 | 324 | 1.99e-35 | 132 |
| Msa0302280 | AT5G56180.1 | 31.338 | 284 | 170 | 9 | 91 | 358 | 182 | 456 | 1.21e-34 | 133 |
| Msa0302280 | AT3G12380.2 | 29.183 | 257 | 159 | 6 | 9 | 245 | 21 | 274 | 1.23e-24 | 106 |
| Msa0302280 | AT3G12380.2 | 32.738 | 168 | 106 | 4 | 207 | 368 | 550 | 716 | 3.91e-17 | 83.6 |
| Msa0302280 | AT3G12380.1 | 29.020 | 255 | 156 | 6 | 9 | 245 | 21 | 268 | 4.92e-24 | 104 |
| Msa0302280 | AT3G12380.1 | 32.738 | 168 | 106 | 4 | 207 | 368 | 544 | 710 | 3.79e-17 | 83.6 |
| Msa0302280 | AT1G73910.1 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.11e-23 | 95.1 |
| Msa0302280 | AT1G73910.2 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.11e-23 | 95.1 |
| Msa0302280 | AT5G56180.2 | 32.178 | 202 | 114 | 8 | 91 | 281 | 182 | 371 | 2.11e-19 | 89.4 |
| Msa0302280 | AT1G73910.3 | 29.268 | 123 | 71 | 2 | 1 | 107 | 1 | 123 | 3.02e-12 | 64.7 |
Find 109 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGATCTTCATGCTGCTT+GGG | 0.250595 | 2_3:+59058675 | None:intergenic |
| AGCAAAACCGGGTGCTCCTC+TGG | 0.272892 | 2_3:+59059623 | None:intergenic |
| CAACCACTGGTCTGTGATAA+TGG | 0.278942 | 2_3:-59060233 | Msa0302280:CDS |
| AACATTTAGGCTGGATTTGC+TGG | 0.289528 | 2_3:-59059869 | Msa0302280:intron |
| TGCTATGTATGTTGCTATTC+AGG | 0.305017 | 2_3:-59059525 | Msa0302280:CDS |
| GGGATGACATGGAGAAAATT+TGG | 0.308086 | 2_3:-59059679 | Msa0302280:CDS |
| AGGGCATATCCTTCATAAAT+AGG | 0.317673 | 2_3:+59059148 | None:intergenic |
| CACACGGAGTTCATTGTAAA+AGG | 0.330285 | 2_3:+59059649 | None:intergenic |
| ACCTTGATCTTCATGCTGCT+TGG | 0.336588 | 2_3:+59058674 | None:intergenic |
| AGCATGGTATTGTGAGTAAC+TGG | 0.340011 | 2_3:-59059700 | Msa0302280:CDS |
| TCAACGGTTGCAGCTGAGAT+AGG | 0.377020 | 2_3:-59060755 | Msa0302280:five_prime_UTR |
| GGTGCTTCAGTGAGCAAAAC+CGG | 0.396077 | 2_3:+59059611 | None:intergenic |
| CTCACAATACCATGCTCAAT+TGG | 0.397001 | 2_3:+59059707 | None:intergenic |
| CAAGCTCTTGCTCAAAATCA+AGG | 0.399460 | 2_3:+59058978 | None:intergenic |
| CTCATTCTGTCAGCAATGCC+AGG | 0.400398 | 2_3:+59058719 | None:intergenic |
| ATCCTTCGTCTTGATTTAGC+AGG | 0.412905 | 2_3:-59059115 | Msa0302280:CDS |
| GATGGCCAGATCATCACTAT+TGG | 0.420978 | 2_3:-59058908 | Msa0302280:CDS |
| AAGAACGACATTAACGTTGT+TGG | 0.421667 | 2_3:+59060898 | None:intergenic |
| CCGAGAGAAAATACAGTGTC+TGG | 0.425088 | 2_3:-59058640 | Msa0302280:CDS |
| GCAAAACCGGGTGCTCCTCT+GGG | 0.429592 | 2_3:+59059624 | None:intergenic |
| TACAATTTCACGCTCGGCTG+TGG | 0.436320 | 2_3:+59059033 | None:intergenic |
| TATGGAAATATTGTCCTTAG+TGG | 0.444109 | 2_3:-59058758 | Msa0302280:CDS |
| CACTGGTGTGATGGTTGGCA+TGG | 0.449957 | 2_3:-59059795 | Msa0302280:CDS |
| GATATCAGAAAGGACTTGTA+TGG | 0.450042 | 2_3:-59058776 | Msa0302280:CDS |
| TAGAATGCTGCAGAATGGTT+TGG | 0.453399 | 2_3:-59058388 | Msa0302280:three_prime_UTR |
| AGTGCTAAGAGAAGCTAAGA+TGG | 0.454030 | 2_3:+59058607 | None:intergenic |
| CTTGATCTTCATGCTGCTTG+GGG | 0.455780 | 2_3:+59058676 | None:intergenic |
| TATGCTAGTGGTCGAACAAC+CGG | 0.457727 | 2_3:-59059488 | Msa0302280:intron |
| CAGCTCCAATAGTGATGATC+TGG | 0.458059 | 2_3:+59058903 | None:intergenic |
| ATCTCTTACAATTTCACGCT+CGG | 0.471407 | 2_3:+59059027 | None:intergenic |
| GCTGTGTTTCCTAGCATTGT+TGG | 0.477335 | 2_3:-59059830 | Msa0302280:CDS |
| TAATGGAACAGGAATGGTTA+AGG | 0.478719 | 2_3:-59060216 | Msa0302280:intron |
| CTGGTCTGTGATAATGGAAC+AGG | 0.481376 | 2_3:-59060227 | Msa0302280:CDS |
| AAATACAGTGTCTGGATTGG+TGG | 0.485676 | 2_3:-59058632 | Msa0302280:CDS |
| CCAGCCTTCCATGGTTGGAA+TGG | 0.489084 | 2_3:-59058852 | Msa0302280:CDS |
| ATAGTGATGATCTGGCCATC+AGG | 0.494142 | 2_3:+59058911 | None:intergenic |
| AAGGCCGAGTACGATGAATC+TGG | 0.498285 | 2_3:-59058439 | Msa0302280:CDS |
| AAGAATAACCACGCTCGGTA+AGG | 0.505013 | 2_3:+59059062 | None:intergenic |
| ATGAAAATCCTTACCGAGCG+TGG | 0.509930 | 2_3:-59059070 | Msa0302280:CDS |
| AGAAAATACAGTGTCTGGAT+TGG | 0.510090 | 2_3:-59058635 | Msa0302280:CDS |
| CCATTCCAACCATGGAAGGC+TGG | 0.515654 | 2_3:+59058852 | None:intergenic |
| TAGAGTCAATATACCACGCT+TGG | 0.516667 | 2_3:+59059736 | None:intergenic |
| CACACTGTGCCTATTTATGA+AGG | 0.522782 | 2_3:-59059157 | Msa0302280:CDS |
| ATGCTAGGAAACACAGCCCT+TGG | 0.526579 | 2_3:+59059836 | None:intergenic |
| TGCTGGAGATGATGCTCCAA+GGG | 0.531721 | 2_3:-59059852 | Msa0302280:CDS |
| GGTGGTACTACTATGTTCCC+TGG | 0.534257 | 2_3:-59058737 | Msa0302280:CDS |
| GCAGGTATTGTACTGGACTC+TGG | 0.536986 | 2_3:-59059193 | Msa0302280:intron |
| CGATTAGCCTTTGGATTGAG+CGG | 0.541575 | 2_3:+59059590 | None:intergenic |
| GACCAGTGGTTGAATATCCT+CGG | 0.542292 | 2_3:+59060244 | None:intergenic |
| CGCCGAGGATATTCAACCAC+TGG | 0.542623 | 2_3:-59060246 | Msa0302280:CDS |
| AGTATTTATGTAATGTTAGA+CGG | 0.543570 | 2_3:-59058294 | Msa0302280:three_prime_UTR |
| CCCAAGCAGCATGAAGATCA+AGG | 0.543751 | 2_3:-59058675 | Msa0302280:CDS |
| AATATGTGCAGGTATTGTAC+TGG | 0.544002 | 2_3:-59059200 | Msa0302280:intron |
| TCGTTCTTAGAACTTAGAAT+CGG | 0.545558 | 2_3:-59060883 | Msa0302280:five_prime_UTR |
| TCCTTCGTCTTGATTTAGCA+GGG | 0.546953 | 2_3:-59059114 | Msa0302280:CDS |
| GAAGGCTGGAAAAGAACCTC+AGG | 0.547727 | 2_3:+59058866 | None:intergenic |
| TGAAATTGTAAGAGATGTGA+AGG | 0.550481 | 2_3:-59059020 | Msa0302280:CDS |
| CGTGGTCGACCAACAATGCT+AGG | 0.552232 | 2_3:+59059821 | None:intergenic |
| ACATAGTAGTACCACCACTA+AGG | 0.559599 | 2_3:+59058744 | None:intergenic |
| TTGCTGGAGATGATGCTCCA+AGG | 0.560432 | 2_3:-59059853 | Msa0302280:CDS |
| GACGAAGGATAGCATGTGGA+AGG | 0.560879 | 2_3:+59059128 | None:intergenic |
| AAGCTCTTGCTCAAAATCAA+GGG | 0.566750 | 2_3:+59058979 | None:intergenic |
| ACCACGCCACACTGGTGTGA+TGG | 0.574183 | 2_3:-59059804 | Msa0302280:CDS |
| CTAAAATATCCAATTGAGCA+TGG | 0.574515 | 2_3:-59059716 | Msa0302280:CDS |
| TGTGGCCCCAGAGGAGCACC+CGG | 0.576326 | 2_3:-59059630 | Msa0302280:CDS |
| TGAATAGCAACATACATAGC+AGG | 0.576757 | 2_3:+59059527 | None:intergenic |
| CGCCACACTGGTGTGATGGT+TGG | 0.577341 | 2_3:-59059800 | Msa0302280:CDS |
| GTGCTTCAGTGAGCAAAACC+GGG | 0.578129 | 2_3:+59059612 | None:intergenic |
| GCTTCCATTCCAACCATGGA+AGG | 0.580286 | 2_3:+59058848 | None:intergenic |
| GGTGCTCCTCTGGGGCCACA+CGG | 0.580962 | 2_3:+59059633 | None:intergenic |
| AACAGCTTCCATTCCAACCA+TGG | 0.591828 | 2_3:+59058844 | None:intergenic |
| GAGCAAGGAAATTACCGCGT+TGG | 0.592403 | 2_3:-59058699 | Msa0302280:CDS |
| GGAAATATTGTCCTTAGTGG+TGG | 0.594437 | 2_3:-59058755 | Msa0302280:CDS |
| AGTGAAAGAATAACCACGCT+CGG | 0.601145 | 2_3:+59059057 | None:intergenic |
| AGGACCAGATTCATCGTACT+CGG | 0.601521 | 2_3:+59058435 | None:intergenic |
| TGTGAGTAACTGGGATGACA+TGG | 0.601686 | 2_3:-59059690 | Msa0302280:CDS |
| TGAGCGTTTCCGTTGTCCTG+AGG | 0.602279 | 2_3:-59058882 | Msa0302280:CDS |
| ATTGTACTGGACTCTGGAGA+TGG | 0.605459 | 2_3:-59059187 | Msa0302280:CDS |
| TCAATAGCGACTTGCAACGA+TGG | 0.608358 | 2_3:-59058337 | Msa0302280:three_prime_UTR |
| GTTGGTCGACCACGCCACAC+TGG | 0.610992 | 2_3:-59059812 | Msa0302280:CDS |
| ATGGTTGGAATGGAAGCTGT+TGG | 0.612805 | 2_3:-59058842 | Msa0302280:CDS |
| TGAAGCACCGCTCAATCCAA+AGG | 0.625231 | 2_3:-59059597 | Msa0302280:CDS |
| CATGCTGCTTGGGGCCAACG+CGG | 0.625414 | 2_3:+59058685 | None:intergenic |
| CATTGCTGACAGAATGAGCA+AGG | 0.625589 | 2_3:-59058714 | Msa0302280:CDS |
| ACCATCACACCAGTGTGGCG+TGG | 0.628231 | 2_3:+59059803 | None:intergenic |
| CTGTGATAATGGAACAGGAA+TGG | 0.632340 | 2_3:-59060222 | Msa0302280:CDS |
| TTGAAAGATAGTCGTGAACG+TGG | 0.634011 | 2_3:-59060854 | Msa0302280:five_prime_UTR |
| ACTAGCATAGAGCGATAGAA+CGG | 0.636987 | 2_3:+59059502 | None:intergenic |
| CAAAACCGGGTGCTCCTCTG+GGG | 0.638105 | 2_3:+59059625 | None:intergenic |
| GTTCTATCGCTCTATGCTAG+TGG | 0.639915 | 2_3:-59059500 | Msa0302280:CDS |
| TCAAGACGAAGGATAGCATG+TGG | 0.640472 | 2_3:+59059124 | None:intergenic |
| AAGAGTTATGAACTTCCTGA+TGG | 0.641331 | 2_3:-59058926 | Msa0302280:CDS |
| TCATTCTGTCAGCAATGCCA+GGG | 0.641800 | 2_3:+59058720 | None:intergenic |
| ACTGGTGTGATGGTTGGCAT+GGG | 0.642331 | 2_3:-59059794 | Msa0302280:CDS |
| TGAACTCCGTGTGGCCCCAG+AGG | 0.648993 | 2_3:-59059639 | Msa0302280:CDS |
| GCTGCAGAATGGTTTGGTGT+AGG | 0.651370 | 2_3:-59058382 | Msa0302280:three_prime_UTR |
| AAAGACAATGGCAGACGCCG+AGG | 0.653794 | 2_3:-59060261 | Msa0302280:exon |
| GGAAAAGAACCTCAGGACAA+CGG | 0.659232 | 2_3:+59058873 | None:intergenic |
| ACGAAGGATAGCATGTGGAA+GGG | 0.659324 | 2_3:+59059129 | None:intergenic |
| GATGAAGCTCAGTCCAAGCG+TGG | 0.663966 | 2_3:-59059749 | Msa0302280:CDS |
| AATGCAGATGTGGATTGCAA+AGG | 0.664746 | 2_3:-59058458 | Msa0302280:intron |
| GTGTGATGTTGATATCAGAA+AGG | 0.677167 | 2_3:-59058786 | Msa0302280:CDS |
| TTAGACGGTGAAGTCAGCGA+AGG | 0.681518 | 2_3:-59058279 | Msa0302280:three_prime_UTR |
| GTTCCATTATCACAGACCAG+TGG | 0.693343 | 2_3:+59060230 | None:intergenic |
| TGCCAACCATCACACCAGTG+TGG | 0.706399 | 2_3:+59059798 | None:intergenic |
| GCATGGTATTGTGAGTAACT+GGG | 0.709006 | 2_3:-59059699 | Msa0302280:CDS |
| GCCCTGCTAAATCAAGACGA+AGG | 0.714666 | 2_3:+59059113 | None:intergenic |
| CTTCATAAATAGGCACAGTG+TGG | 0.723850 | 2_3:+59059158 | None:intergenic |
| AAGCAGCATGAAGATCAAGG+TGG | 0.767710 | 2_3:-59058672 | Msa0302280:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTCTTTAAATTGTTT+TGG | - | chr2_3:59058800-59058819 | Msa0302280:CDS | 15.0% |
| !! | AAAAAATTGTTCTATATCTA+TGG | - | chr2_3:59059885-59059904 | Msa0302280:intron | 15.0% |
| !! | TTTGTTGATATTCATGTATA+TGG | - | chr2_3:59058477-59058496 | Msa0302280:intron | 20.0% |
| !!! | CATTCTAAGTTTTTTTATAC+TGG | - | chr2_3:59059732-59059751 | Msa0302280:CDS | 20.0% |
| !! | ATGTCAAAAAAAGAATTCTA+AGG | + | chr2_3:59060619-59060638 | None:intergenic | 20.0% |
| !! | AGTATTTATGTAATGTTAGA+CGG | - | chr2_3:59060852-59060871 | Msa0302280:five_prime_UTR | 20.0% |
| !!! | TCATTTTTTGTTGCTTTCAA+CGG | - | chr2_3:59058375-59058394 | Msa0302280:three_prime_UTR | 25.0% |
| !!! | ACGAGTTTTATTTGATATGT+TGG | - | chr2_3:59058572-59058591 | Msa0302280:intron | 25.0% |
| ! | TTATACACGCTATATACATA+CGG | + | chr2_3:59058631-59058650 | None:intergenic | 25.0% |
| ! | TTAGATTACCATAACATGTT+TGG | + | chr2_3:59058707-59058726 | None:intergenic | 25.0% |
| ! | AAGTGTAAGAATAATTAGTG+AGG | - | chr2_3:59058735-59058754 | Msa0302280:CDS | 25.0% |
| !! | TATCTTTTCTGTTTTCTCTT+CGG | - | chr2_3:59059011-59059030 | Msa0302280:CDS | 25.0% |
| !! | AGTACTAAATGTTGTTGTTA+AGG | - | chr2_3:59059106-59059125 | Msa0302280:CDS | 25.0% |
| !! | ACACATTAGTTTCTTAAATC+GGG | + | chr2_3:59059694-59059713 | None:intergenic | 25.0% |
| !! | GACACATTAGTTTCTTAAAT+CGG | + | chr2_3:59059695-59059714 | None:intergenic | 25.0% |
| !!! | TCAGTTTGTTAATGGATATA+TGG | - | chr2_3:59059784-59059803 | Msa0302280:CDS | 25.0% |
| !! | TTTGACATGTTTGATTTACT+TGG | - | chr2_3:59060631-59060650 | Msa0302280:intron | 25.0% |
| !! | TTGACATGTTTGATTTACTT+GGG | - | chr2_3:59060632-59060651 | Msa0302280:intron | 25.0% |
| !!! | TATTTTTGAAAATGCAGATG+TGG | - | chr2_3:59060678-59060697 | Msa0302280:intron | 25.0% |
| TCGTTCTTAGAACTTAGAAT+CGG | - | chr2_3:59058263-59058282 | Msa0302280:three_prime_UTR | 30.0% | |
| ACGGATAAATGAAAACTTGT+GGG | + | chr2_3:59058612-59058631 | None:intergenic | 30.0% | |
| TACGGATAAATGAAAACTTG+TGG | + | chr2_3:59058613-59058632 | None:intergenic | 30.0% | |
| !!! | AATTGTTTTGGAATAGCACT+TGG | - | chr2_3:59058812-59058831 | Msa0302280:CDS | 30.0% |
| ATGTACTAAGAAGGAGTTTA+TGG | - | chr2_3:59058847-59058866 | Msa0302280:CDS | 30.0% | |
| TCACAGCAAATTAGTAGAAA+GGG | + | chr2_3:59059236-59059255 | None:intergenic | 30.0% | |
| TTCACAGCAAATTAGTAGAA+AGG | + | chr2_3:59059237-59059256 | None:intergenic | 30.0% | |
| ! | CATTGTGATTTGCAACATTT+AGG | - | chr2_3:59059264-59059283 | Msa0302280:intron | 30.0% |
| CTAAAATATCCAATTGAGCA+TGG | - | chr2_3:59059430-59059449 | Msa0302280:intron | 30.0% | |
| AAAAATAAGAATGCGTTGCA+AGG | - | chr2_3:59059760-59059779 | Msa0302280:CDS | 30.0% | |
| ATGAAGTCTAGTTAAGTTCA+TGG | - | chr2_3:59059828-59059847 | Msa0302280:CDS | 30.0% | |
| TGAAGTCTAGTTAAGTTCAT+GGG | - | chr2_3:59059829-59059848 | Msa0302280:CDS | 30.0% | |
| TAGTTAAGTTCATGGGAAAA+AGG | - | chr2_3:59059836-59059855 | Msa0302280:CDS | 30.0% | |
| AGTTAAGTTCATGGGAAAAA+GGG | - | chr2_3:59059837-59059856 | Msa0302280:CDS | 30.0% | |
| AAGGGGAAAATAGACAAAAA+TGG | - | chr2_3:59059855-59059874 | Msa0302280:CDS | 30.0% | |
| AACTCTATATGAATATGTGC+AGG | - | chr2_3:59059935-59059954 | Msa0302280:intron | 30.0% | |
| TGAAATTGTAAGAGATGTGA+AGG | - | chr2_3:59060126-59060145 | Msa0302280:intron | 30.0% | |
| TATGGAAATATTGTCCTTAG+TGG | - | chr2_3:59060388-59060407 | Msa0302280:intron | 30.0% | |
| AAGAACGACATTAACGTTGT+TGG | + | chr2_3:59058251-59058270 | None:intergenic | 35.0% | |
| ACGTACGTAAAAACCTGAAA+TGG | + | chr2_3:59058442-59058461 | None:intergenic | 35.0% | |
| GTATTGTGCCAAACATGTTA+TGG | - | chr2_3:59058696-59058715 | Msa0302280:CDS | 35.0% | |
| CGTCTTTCAATGTACTAAGA+AGG | - | chr2_3:59058838-59058857 | Msa0302280:CDS | 35.0% | |
| !! | GTGCAGATTTTGAAAGACAA+TGG | - | chr2_3:59058873-59058892 | Msa0302280:CDS | 35.0% |
| TAATGGAACAGGAATGGTTA+AGG | - | chr2_3:59058930-59058949 | Msa0302280:CDS | 35.0% | |
| ! | TTTTTCCTGAAGAAGCGATT+TGG | - | chr2_3:59058983-59059002 | Msa0302280:CDS | 35.0% |
| GGACAAAAAGATGCATATGT+TGG | - | chr2_3:59059373-59059392 | Msa0302280:intron | 35.0% | |
| !!! | ATTTTCTCACGATTAGCCTT+TGG | + | chr2_3:59059568-59059587 | None:intergenic | 35.0% |
| TGAATAGCAACATACATAGC+AGG | + | chr2_3:59059622-59059641 | None:intergenic | 35.0% | |
| ! | TGCTATGTATGTTGCTATTC+AGG | - | chr2_3:59059621-59059640 | Msa0302280:CDS | 35.0% |
| TAAATCGGGAAATGACTAAC+CGG | + | chr2_3:59059680-59059699 | None:intergenic | 35.0% | |
| !! | TGCAAGGTTCAGTTTGTTAA+TGG | - | chr2_3:59059776-59059795 | Msa0302280:CDS | 35.0% |
| GTTAAGTTCATGGGAAAAAG+GGG | - | chr2_3:59059838-59059857 | Msa0302280:CDS | 35.0% | |
| ! | AATATGTGCAGGTATTGTAC+TGG | - | chr2_3:59059946-59059965 | Msa0302280:intron | 35.0% |
| AGGGCATATCCTTCATAAAT+AGG | + | chr2_3:59060001-59060020 | None:intergenic | 35.0% | |
| ATCTCTTACAATTTCACGCT+CGG | + | chr2_3:59060122-59060141 | None:intergenic | 35.0% | |
| AAGCTCTTGCTCAAAATCAA+GGG | + | chr2_3:59060170-59060189 | None:intergenic | 35.0% | |
| AAGAGTTATGAACTTCCTGA+TGG | - | chr2_3:59060220-59060239 | Msa0302280:CDS | 35.0% | |
| GTGTGATGTTGATATCAGAA+AGG | - | chr2_3:59060360-59060379 | Msa0302280:intron | 35.0% | |
| GATATCAGAAAGGACTTGTA+TGG | - | chr2_3:59060370-59060389 | Msa0302280:intron | 35.0% | |
| AGAAAATACAGTGTCTGGAT+TGG | - | chr2_3:59060511-59060530 | Msa0302280:intron | 35.0% | |
| ! | TTCTCTTAGCACTTTTCAAC+AGG | - | chr2_3:59060549-59060568 | Msa0302280:intron | 35.0% |
| AAGGCATGCATAAATACACA+CGG | + | chr2_3:59060600-59060619 | None:intergenic | 35.0% | |
| ! | CATTTTCTGTGCACAATTGA+AGG | + | chr2_3:59060734-59060753 | None:intergenic | 35.0% |
| TTGAAAGATAGTCGTGAACG+TGG | - | chr2_3:59058292-59058311 | Msa0302280:three_prime_UTR | 40.0% | |
| !! | CTGTGATAATGGAACAGGAA+TGG | - | chr2_3:59058924-59058943 | Msa0302280:CDS | 40.0% |
| ! | TCTTTTCTACGATCTGCGAT+TGG | - | chr2_3:59059180-59059199 | Msa0302280:CDS | 40.0% |
| ! | GTGATTTGCAACATTTAGGC+TGG | - | chr2_3:59059268-59059287 | Msa0302280:intron | 40.0% |
| AACATTTAGGCTGGATTTGC+TGG | - | chr2_3:59059277-59059296 | Msa0302280:intron | 40.0% | |
| TAGAGTCAATATACCACGCT+TGG | + | chr2_3:59059413-59059432 | None:intergenic | 40.0% | |
| CTCACAATACCATGCTCAAT+TGG | + | chr2_3:59059442-59059461 | None:intergenic | 40.0% | |
| AGCATGGTATTGTGAGTAAC+TGG | - | chr2_3:59059446-59059465 | Msa0302280:intron | 40.0% | |
| GCATGGTATTGTGAGTAACT+GGG | - | chr2_3:59059447-59059466 | Msa0302280:intron | 40.0% | |
| GGGATGACATGGAGAAAATT+TGG | - | chr2_3:59059467-59059486 | Msa0302280:intron | 40.0% | |
| CACACGGAGTTCATTGTAAA+AGG | + | chr2_3:59059500-59059519 | None:intergenic | 40.0% | |
| ! | CTTTTACAATGAACTCCGTG+TGG | - | chr2_3:59059498-59059517 | Msa0302280:CDS | 40.0% |
| ACTAGCATAGAGCGATAGAA+CGG | + | chr2_3:59059647-59059666 | None:intergenic | 40.0% | |
| CTTCATAAATAGGCACAGTG+TGG | + | chr2_3:59059991-59060010 | None:intergenic | 40.0% | |
| CACACTGTGCCTATTTATGA+AGG | - | chr2_3:59059989-59060008 | Msa0302280:intron | 40.0% | |
| ATCCTTCGTCTTGATTTAGC+AGG | - | chr2_3:59060031-59060050 | Msa0302280:intron | 40.0% | |
| TCCTTCGTCTTGATTTAGCA+GGG | - | chr2_3:59060032-59060051 | Msa0302280:intron | 40.0% | |
| !! | TTTTCATCAAGGCATCAGTG+AGG | + | chr2_3:59060063-59060082 | None:intergenic | 40.0% |
| ! | CTCGGTAAGGATTTTCATCA+AGG | + | chr2_3:59060074-59060093 | None:intergenic | 40.0% |
| AGTGAAAGAATAACCACGCT+CGG | + | chr2_3:59060092-59060111 | None:intergenic | 40.0% | |
| CAAGCTCTTGCTCAAAATCA+AGG | + | chr2_3:59060171-59060190 | None:intergenic | 40.0% | |
| GGAAATATTGTCCTTAGTGG+TGG | - | chr2_3:59060391-59060410 | Msa0302280:intron | 40.0% | |
| ACATAGTAGTACCACCACTA+AGG | + | chr2_3:59060405-59060424 | None:intergenic | 40.0% | |
| ! | CAGACACTGTATTTTCTCTC+GGG | + | chr2_3:59060508-59060527 | None:intergenic | 40.0% |
| ! | CCAGACACTGTATTTTCTCT+CGG | + | chr2_3:59060509-59060528 | None:intergenic | 40.0% |
| ! | AAATACAGTGTCTGGATTGG+TGG | - | chr2_3:59060514-59060533 | Msa0302280:intron | 40.0% |
| AGTGCTAAGAGAAGCTAAGA+TGG | + | chr2_3:59060542-59060561 | None:intergenic | 40.0% | |
| CACGGACAATGTGAGTATAT+CGG | + | chr2_3:59060582-59060601 | None:intergenic | 40.0% | |
| ! | AATGCAGATGTGGATTGCAA+AGG | - | chr2_3:59060688-59060707 | Msa0302280:intron | 40.0% |
| !!! | GCTTTTAGAATGCTGCAGAA+TGG | - | chr2_3:59060753-59060772 | Msa0302280:five_prime_UTR | 40.0% |
| TAGAATGCTGCAGAATGGTT+TGG | - | chr2_3:59060758-59060777 | Msa0302280:five_prime_UTR | 40.0% | |
| ! | CTCTTTTGACGCACCATTTC+AGG | - | chr2_3:59058426-59058445 | Msa0302280:CDS | 45.0% |
| TGATATGTTGGAGCTCGCAT+TGG | - | chr2_3:59058584-59058603 | Msa0302280:intron | 45.0% | |
| GACCAGTGGTTGAATATCCT+CGG | + | chr2_3:59058905-59058924 | None:intergenic | 45.0% | |
| ! | CAACCACTGGTCTGTGATAA+TGG | - | chr2_3:59058913-59058932 | Msa0302280:CDS | 45.0% |
| GTTCCATTATCACAGACCAG+TGG | + | chr2_3:59058919-59058938 | None:intergenic | 45.0% | |
| !! | CTGGTCTGTGATAATGGAAC+AGG | - | chr2_3:59058919-59058938 | Msa0302280:CDS | 45.0% |
| CATAGCCAAATCGCTTCTTC+AGG | + | chr2_3:59058991-59059010 | None:intergenic | 45.0% | |
| GCTGTGTTTCCTAGCATTGT+TGG | - | chr2_3:59059316-59059335 | Msa0302280:intron | 45.0% | |
| TGTGAGTAACTGGGATGACA+TGG | - | chr2_3:59059456-59059475 | Msa0302280:intron | 45.0% | |
| !! | CGATTAGCCTTTGGATTGAG+CGG | + | chr2_3:59059559-59059578 | None:intergenic | 45.0% |
| GTTCTATCGCTCTATGCTAG+TGG | - | chr2_3:59059646-59059665 | Msa0302280:CDS | 45.0% | |
| TATGCTAGTGGTCGAACAAC+CGG | - | chr2_3:59059658-59059677 | Msa0302280:CDS | 45.0% | |
| ! | ATTGTACTGGACTCTGGAGA+TGG | - | chr2_3:59059959-59059978 | Msa0302280:intron | 45.0% |
| ACGAAGGATAGCATGTGGAA+GGG | + | chr2_3:59060020-59060039 | None:intergenic | 45.0% | |
| TCAAGACGAAGGATAGCATG+TGG | + | chr2_3:59060025-59060044 | None:intergenic | 45.0% | |
| ATGAAAATCCTTACCGAGCG+TGG | - | chr2_3:59060076-59060095 | Msa0302280:intron | 45.0% | |
| AAGAATAACCACGCTCGGTA+AGG | + | chr2_3:59060087-59060106 | None:intergenic | 45.0% | |
| ATAGTGATGATCTGGCCATC+AGG | + | chr2_3:59060238-59060257 | None:intergenic | 45.0% | |
| GATGGCCAGATCATCACTAT+TGG | - | chr2_3:59060238-59060257 | Msa0302280:CDS | 45.0% | |
| CAGCTCCAATAGTGATGATC+TGG | + | chr2_3:59060246-59060265 | None:intergenic | 45.0% | |
| GGAAAAGAACCTCAGGACAA+CGG | + | chr2_3:59060276-59060295 | None:intergenic | 45.0% | |
| AACAGCTTCCATTCCAACCA+TGG | + | chr2_3:59060305-59060324 | None:intergenic | 45.0% | |
| ATGGTTGGAATGGAAGCTGT+TGG | - | chr2_3:59060304-59060323 | Msa0302280:intron | 45.0% | |
| TCATTCTGTCAGCAATGCCA+GGG | + | chr2_3:59060429-59060448 | None:intergenic | 45.0% | |
| CATTGCTGACAGAATGAGCA+AGG | - | chr2_3:59060432-59060451 | Msa0302280:intron | 45.0% | |
| ! | CTTGATCTTCATGCTGCTTG+GGG | + | chr2_3:59060473-59060492 | None:intergenic | 45.0% |
| ! | CCTTGATCTTCATGCTGCTT+GGG | + | chr2_3:59060474-59060493 | None:intergenic | 45.0% |
| ACCTTGATCTTCATGCTGCT+TGG | + | chr2_3:59060475-59060494 | None:intergenic | 45.0% | |
| AAGCAGCATGAAGATCAAGG+TGG | - | chr2_3:59060474-59060493 | Msa0302280:intron | 45.0% | |
| ! | ACACTGTATTTTCTCTCGGG+TGG | + | chr2_3:59060505-59060524 | None:intergenic | 45.0% |
| CCGAGAGAAAATACAGTGTC+TGG | - | chr2_3:59060506-59060525 | Msa0302280:intron | 45.0% | |
| AGGACCAGATTCATCGTACT+CGG | + | chr2_3:59060714-59060733 | None:intergenic | 45.0% | |
| TCAATAGCGACTTGCAACGA+TGG | - | chr2_3:59060809-59060828 | Msa0302280:five_prime_UTR | 45.0% | |
| TCAACGGTTGCAGCTGAGAT+AGG | - | chr2_3:59058391-59058410 | Msa0302280:exon | 50.0% | |
| TTGCTGGAGATGATGCTCCA+AGG | - | chr2_3:59059293-59059312 | Msa0302280:intron | 50.0% | |
| TGCTGGAGATGATGCTCCAA+GGG | - | chr2_3:59059294-59059313 | Msa0302280:intron | 50.0% | |
| ATGCTAGGAAACACAGCCCT+TGG | + | chr2_3:59059313-59059332 | None:intergenic | 50.0% | |
| ACTGGTGTGATGGTTGGCAT+GGG | - | chr2_3:59059352-59059371 | Msa0302280:intron | 50.0% | |
| GTGCTTCAGTGAGCAAAACC+GGG | + | chr2_3:59059537-59059556 | None:intergenic | 50.0% | |
| GGTGCTTCAGTGAGCAAAAC+CGG | + | chr2_3:59059538-59059557 | None:intergenic | 50.0% | |
| !! | TGAAGCACCGCTCAATCCAA+AGG | - | chr2_3:59059549-59059568 | Msa0302280:CDS | 50.0% |
| ! | GCAGGTATTGTACTGGACTC+TGG | - | chr2_3:59059953-59059972 | Msa0302280:intron | 50.0% |
| GACGAAGGATAGCATGTGGA+AGG | + | chr2_3:59060021-59060040 | None:intergenic | 50.0% | |
| GCCCTGCTAAATCAAGACGA+AGG | + | chr2_3:59060036-59060055 | None:intergenic | 50.0% | |
| TACAATTTCACGCTCGGCTG+TGG | + | chr2_3:59060116-59060135 | None:intergenic | 50.0% | |
| GAAGGCTGGAAAAGAACCTC+AGG | + | chr2_3:59060283-59060302 | None:intergenic | 50.0% | |
| ! | GGTTCTTTTCCAGCCTTCCA+TGG | - | chr2_3:59060285-59060304 | Msa0302280:intron | 50.0% |
| ! | CTTTTCCAGCCTTCCATGGT+TGG | - | chr2_3:59060289-59060308 | Msa0302280:intron | 50.0% |
| GCTTCCATTCCAACCATGGA+AGG | + | chr2_3:59060301-59060320 | None:intergenic | 50.0% | |
| GGTGGTACTACTATGTTCCC+TGG | - | chr2_3:59060409-59060428 | Msa0302280:intron | 50.0% | |
| CTCATTCTGTCAGCAATGCC+AGG | + | chr2_3:59060430-59060449 | None:intergenic | 50.0% | |
| GAGCAAGGAAATTACCGCGT+TGG | - | chr2_3:59060447-59060466 | Msa0302280:intron | 50.0% | |
| CCCAAGCAGCATGAAGATCA+AGG | - | chr2_3:59060471-59060490 | Msa0302280:intron | 50.0% | |
| AAGGCCGAGTACGATGAATC+TGG | - | chr2_3:59060707-59060726 | Msa0302280:intron | 50.0% | |
| !! | GCTGCAGAATGGTTTGGTGT+AGG | - | chr2_3:59060764-59060783 | Msa0302280:five_prime_UTR | 50.0% |
| TTAGACGGTGAAGTCAGCGA+AGG | - | chr2_3:59060867-59060886 | Msa0302280:five_prime_UTR | 50.0% | |
| AAAGACAATGGCAGACGCCG+AGG | - | chr2_3:59058885-59058904 | Msa0302280:CDS | 55.0% | |
| CGCCGAGGATATTCAACCAC+TGG | - | chr2_3:59058900-59058919 | Msa0302280:CDS | 55.0% | |
| CGTGGTCGACCAACAATGCT+AGG | + | chr2_3:59059328-59059347 | None:intergenic | 55.0% | |
| TGCCAACCATCACACCAGTG+TGG | + | chr2_3:59059351-59059370 | None:intergenic | 55.0% | |
| CACTGGTGTGATGGTTGGCA+TGG | - | chr2_3:59059351-59059370 | Msa0302280:intron | 55.0% | |
| GATGAAGCTCAGTCCAAGCG+TGG | - | chr2_3:59059397-59059416 | Msa0302280:intron | 55.0% | |
| TGAGCGTTTCCGTTGTCCTG+AGG | - | chr2_3:59060264-59060283 | Msa0302280:exon | 55.0% | |
| CCATTCCAACCATGGAAGGC+TGG | + | chr2_3:59060297-59060316 | None:intergenic | 55.0% | |
| CCAGCCTTCCATGGTTGGAA+TGG | - | chr2_3:59060294-59060313 | Msa0302280:intron | 55.0% | |
| ACCACGCCACACTGGTGTGA+TGG | - | chr2_3:59059342-59059361 | Msa0302280:intron | 60.0% | |
| ACCATCACACCAGTGTGGCG+TGG | + | chr2_3:59059346-59059365 | None:intergenic | 60.0% | |
| CGCCACACTGGTGTGATGGT+TGG | - | chr2_3:59059346-59059365 | Msa0302280:intron | 60.0% | |
| CAAAACCGGGTGCTCCTCTG+GGG | + | chr2_3:59059524-59059543 | None:intergenic | 60.0% | |
| GCAAAACCGGGTGCTCCTCT+GGG | + | chr2_3:59059525-59059544 | None:intergenic | 60.0% | |
| AGCAAAACCGGGTGCTCCTC+TGG | + | chr2_3:59059526-59059545 | None:intergenic | 60.0% | |
| GTTGGTCGACCACGCCACAC+TGG | - | chr2_3:59059334-59059353 | Msa0302280:intron | 65.0% | |
| TGAACTCCGTGTGGCCCCAG+AGG | - | chr2_3:59059507-59059526 | Msa0302280:CDS | 65.0% | |
| ! | CATGCTGCTTGGGGCCAACG+CGG | + | chr2_3:59060464-59060483 | None:intergenic | 65.0% |
| !! | GGTGCTCCTCTGGGGCCACA+CGG | + | chr2_3:59059516-59059535 | None:intergenic | 70.0% |
| !! | TGTGGCCCCAGAGGAGCACC+CGG | - | chr2_3:59059516-59059535 | Msa0302280:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 59058231 | 59060937 | 59058231 | ID=Msa0302280;Name=Msa0302280 |
| chr2_3 | mRNA | 59058231 | 59060937 | 59058231 | ID=Msa0302280-mRNA-1;Parent=Msa0302280;Name=Msa0302280-mRNA-1;_AED=0.06;_eAED=0.06;_QI=230|1|1|1|0.75|0.6|5|177|377 |
| chr2_3 | exon | 59058231 | 59058473 | 59058231 | ID=Msa0302280-mRNA-1:exon:19077;Parent=Msa0302280-mRNA-1 |
| chr2_3 | exon | 59058598 | 59059211 | 59058598 | ID=Msa0302280-mRNA-1:exon:19076;Parent=Msa0302280-mRNA-1 |
| chr2_3 | exon | 59059489 | 59059882 | 59059489 | ID=Msa0302280-mRNA-1:exon:19075;Parent=Msa0302280-mRNA-1 |
| chr2_3 | exon | 59060217 | 59060289 | 59060217 | ID=Msa0302280-mRNA-1:exon:19074;Parent=Msa0302280-mRNA-1 |
| chr2_3 | exon | 59060721 | 59060937 | 59060721 | ID=Msa0302280-mRNA-1:exon:19073;Parent=Msa0302280-mRNA-1 |
| chr2_3 | five_prime_UTR | 59060721 | 59060937 | 59060721 | ID=Msa0302280-mRNA-1:five_prime_utr;Parent=Msa0302280-mRNA-1 |
| chr2_3 | five_prime_UTR | 59060277 | 59060289 | 59060277 | ID=Msa0302280-mRNA-1:five_prime_utr;Parent=Msa0302280-mRNA-1 |
| chr2_3 | CDS | 59060217 | 59060276 | 59060217 | ID=Msa0302280-mRNA-1:cds;Parent=Msa0302280-mRNA-1 |
| chr2_3 | CDS | 59059489 | 59059882 | 59059489 | ID=Msa0302280-mRNA-1:cds;Parent=Msa0302280-mRNA-1 |
| chr2_3 | CDS | 59058598 | 59059211 | 59058598 | ID=Msa0302280-mRNA-1:cds;Parent=Msa0302280-mRNA-1 |
| chr2_3 | CDS | 59058408 | 59058473 | 59058408 | ID=Msa0302280-mRNA-1:cds;Parent=Msa0302280-mRNA-1 |
| chr2_3 | three_prime_UTR | 59058231 | 59058407 | 59058231 | ID=Msa0302280-mRNA-1:three_prime_utr;Parent=Msa0302280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
