AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0145990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145990 MtrunA17_Chr1g0152491 92.632 95 5 2 2 96 1 93 3.06e-57 179
Msa0145990 MtrunA17_Chr7g0242971 56.923 65 27 1 120 183 2 66 2.25e-19 83.2
Msa0145990 MtrunA17_Chr8g0384791 33.333 96 58 3 98 188 118 212 6.15e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0145990 AT1G26220.1 51.456 103 38 4 2 96 1 99 2.61e-22 89.7

Find 38 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATACTTTGTTAAGTGCTTCT+AGG 0.216082 1_4:+5710889 None:intergenic
ATAAGGTGTGGAATGATATT+AGG 0.315507 1_4:-5703376 Msa0145990:CDS
GGGTCACCTTATGGAACATT+TGG 0.371890 1_4:-5703412 Msa0145990:CDS
GCAGTCTATCCTGACTAGTT+TGG 0.399020 1_4:-5703507 Msa0145990:CDS
AAGTTAAGTCGTAGGGAGGA+TGG 0.419412 1_4:+5711047 None:intergenic
TAGGCTTGCTTGACAAGAAA+TGG 0.442809 1_4:+5710989 None:intergenic
TGGAATTATCCAAACTAGTC+AGG 0.445555 1_4:+5703498 None:intergenic
GTTGTTCGTTGGCAGCATAC+TGG 0.469967 1_4:-5703536 Msa0145990:CDS
ATTCTCCGCCGAACCGCAGA+GGG 0.489832 1_4:-5710918 Msa0145990:CDS
GGTTTAACCCCTCTGCGGTT+CGG 0.494949 1_4:+5710910 None:intergenic
TTTGAAGAAGTTAAGTCGTA+GGG 0.496530 1_4:+5711040 None:intergenic
GAGTAAGGGCATGCAATGTC+TGG 0.503820 1_4:-5703618 Msa0145990:CDS
ACTCGAGCACACTGACTCAA+TGG 0.522170 1_4:-5710817 Msa0145990:intron
ATTTGAAGAAGTTAAGTCGT+AGG 0.522993 1_4:+5711039 None:intergenic
AGTCGTAGGGAGGATGGAAG+AGG 0.540218 1_4:+5711053 None:intergenic
CAACATTCATGCACACTCAC+AGG 0.540226 1_4:+5703338 None:intergenic
ATATTGAGAGTGGGTAGTCT+AGG 0.541441 1_4:+5710970 None:intergenic
GTGCTAAAAGTGTTGTTCGT+TGG 0.544925 1_4:-5703547 Msa0145990:CDS
ACAAAGTATTCGTAGCAGTA+GGG 0.561588 1_4:-5710875 Msa0145990:CDS
AAATGGTGAGGTTTCGTAGT+GGG 0.566008 1_4:+5711006 None:intergenic
AACAAAGTATTCGTAGCAGT+AGG 0.566118 1_4:-5710876 Msa0145990:CDS
TTAACCCCTCTGCGGTTCGG+CGG 0.568840 1_4:+5710913 None:intergenic
GAAGAAGTTAAGTCGTAGGG+AGG 0.570827 1_4:+5711043 None:intergenic
CGAATTCGCTTGTAGAGTAA+GGG 0.573474 1_4:-5703632 Msa0145990:intron
CATTCTCCGCCGAACCGCAG+AGG 0.581744 1_4:-5710919 Msa0145990:CDS
AAAATAGAAATAATAAGGTG+TGG 0.583629 1_4:-5703388 Msa0145990:CDS
GTTGGCAGCATACTGGATTG+TGG 0.591515 1_4:-5703529 Msa0145990:CDS
GTTTCGTCGGATATTGAGAG+TGG 0.593105 1_4:+5710960 None:intergenic
TTGCTTGACAAGAAATGGTG+AGG 0.596575 1_4:+5710994 None:intergenic
GATAATATGCTGCTCTTACG+TGG 0.618724 1_4:-5711089 None:intergenic
TTCTAGGTTTAACCCCTCTG+CGG 0.644451 1_4:+5710905 None:intergenic
TTTCGTCGGATATTGAGAGT+GGG 0.648674 1_4:+5710961 None:intergenic
TCGTAGCAGTAGGGTTTCCG+CGG 0.663293 1_4:-5710866 Msa0145990:CDS
CATTCATGCACACTCACAGG+TGG 0.681111 1_4:+5703341 None:intergenic
TGACTGTGATGAACAAGATG+AGG 0.681747 1_4:-5703594 Msa0145990:CDS
GAAATGGTGAGGTTTCGTAG+TGG 0.706232 1_4:+5711005 None:intergenic
GACGAAACCCTAGAAAAGCG+AGG 0.715831 1_4:-5710945 Msa0145990:CDS
TTCTCCGCCGAACCGCAGAG+GGG 0.756624 1_4:-5710917 Msa0145990:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATAATTAAATAAAA+AGG + chr1_4:5704054-5704073 None:intergenic 0.0%
!!! TTTTTAAAAATATTTTTTTT+TGG + chr1_4:5709777-5709796 None:intergenic 0.0%
!! AAATAATTAAATAAAAAGGA+GGG + chr1_4:5704050-5704069 None:intergenic 10.0%
!! AAAATAATTAAATAAAAAGG+AGG + chr1_4:5704051-5704070 None:intergenic 10.0%
!! AGTGATTAATATTATAAATA+AGG - chr1_4:5704242-5704261 Msa0145990:intron 10.0%
!!! ACTTTTAGTTTAATTATAAA+AGG + chr1_4:5705005-5705024 None:intergenic 10.0%
!!! TTATTCAATTTATGATTTTT+AGG - chr1_4:5706599-5706618 Msa0145990:intron 10.0%
!!! AATAAATAAGAGTATTATAA+TGG - chr1_4:5706719-5706738 Msa0145990:intron 10.0%
!!! ATTATTTTGAGAAAAAAAAA+TGG - chr1_4:5706782-5706801 Msa0145990:intron 10.0%
!!! TTATTTTGAGAAAAAAAAAT+GGG - chr1_4:5706783-5706802 Msa0145990:intron 10.0%
!!! ATAAACAAAATTTACATTTT+AGG - chr1_4:5706914-5706933 Msa0145990:intron 10.0%
!!! TAAGAAATTAATCTTTAAAA+AGG - chr1_4:5707263-5707282 Msa0145990:intron 10.0%
!! AATTTAATTCAAAAATATGA+AGG + chr1_4:5709720-5709739 None:intergenic 10.0%
!!! AAATATGATTTTTATGTTTT+TGG - chr1_4:5709838-5709857 Msa0145990:intron 10.0%
!!! AATATGATTTTTATGTTTTT+GGG - chr1_4:5709839-5709858 Msa0145990:intron 10.0%
!!! GTTTTCTTAAAAAAAAAAAT+TGG - chr1_4:5709886-5709905 Msa0145990:intron 10.0%
!!! GTTAAAAAATTCTAATTTTT+TGG - chr1_4:5710077-5710096 Msa0145990:intron 10.0%
!!! TTCTTTTTATAATAAACATA+GGG - chr1_4:5710297-5710316 Msa0145990:intron 10.0%
!! CAAAGATAAAAATTTCATAT+TGG + chr1_4:5703818-5703837 None:intergenic 15.0%
!! GTGATTTATTTATATATATG+AGG - chr1_4:5704093-5704112 Msa0145990:intron 15.0%
!! TAGAAATAAGAATAAGTTAT+TGG - chr1_4:5704199-5704218 Msa0145990:intron 15.0%
!! AGAAATAAGAATAAGTTATT+GGG - chr1_4:5704200-5704219 Msa0145990:intron 15.0%
!!! TGAATTTTAATACATATGAA+GGG - chr1_4:5704821-5704840 Msa0145990:intron 15.0%
!!! AATAATATGATTTAAGTTGT+TGG - chr1_4:5704844-5704863 Msa0145990:intron 15.0%
!! GAAATATAATAAAAGATGAT+AGG + chr1_4:5705209-5705228 None:intergenic 15.0%
!!! ATTAAGTTGAATAATTTTGA+AGG - chr1_4:5706564-5706583 Msa0145990:intron 15.0%
!! TCAACAAAAATTAATGTATT+TGG - chr1_4:5707464-5707483 Msa0145990:intron 15.0%
!!! TATTAATTAGAAGTATGTTT+AGG - chr1_4:5707744-5707763 Msa0145990:intron 15.0%
!! TTGAAACAAAGTTTATATTT+AGG - chr1_4:5707794-5707813 Msa0145990:intron 15.0%
!! TGAAACAAAGTTTATATTTA+GGG - chr1_4:5707795-5707814 Msa0145990:intron 15.0%
!!! TAATTGATTTTGTTTAAAAG+TGG - chr1_4:5708242-5708261 Msa0145990:intron 15.0%
!!! ATTTTTCATTTTCTATTGAA+GGG - chr1_4:5708744-5708763 Msa0145990:intron 15.0%
!! TAATTACACTAATATAATGA+AGG - chr1_4:5708922-5708941 Msa0145990:intron 15.0%
!! AATTACACTAATATAATGAA+GGG - chr1_4:5708923-5708942 Msa0145990:intron 15.0%
!!! ACTCATATAATTGTTATTTT+TGG - chr1_4:5709414-5709433 Msa0145990:intron 15.0%
!! TTAAATCAAATTGAATAAGT+TGG - chr1_4:5709444-5709463 Msa0145990:intron 15.0%
!! AATATGTCAACTATAAATTA+GGG - chr1_4:5709557-5709576 Msa0145990:intron 15.0%
!! AAAAAGTTGCAATATTTATA+AGG - chr1_4:5710254-5710273 Msa0145990:intron 15.0%
!! CTATGTTTATTATAAAAAGA+AGG + chr1_4:5710298-5710317 None:intergenic 15.0%
!!! CTTCTTTTTATAATAAACAT+AGG - chr1_4:5710296-5710315 Msa0145990:intron 15.0%
!!! AATTTTTCATTATTTTTTGC+AGG + chr1_4:5710390-5710409 None:intergenic 15.0%
!! TTGGAAAAATAGAAATAATA+AGG - chr1_4:5711024-5711043 Msa0145990:CDS 15.0%
!!! ATTAATTGTGTTGATTTTGA+TGG - chr1_4:5703961-5703980 Msa0145990:intron 20.0%
!! CTACTAACTACAATTAATAA+TGG + chr1_4:5704013-5704032 None:intergenic 20.0%
!! ATTATTAGTGTAAGTAGAAT+TGG - chr1_4:5704167-5704186 Msa0145990:intron 20.0%
!! TATTATAAATAAGGAAGCTT+AGG - chr1_4:5704251-5704270 Msa0145990:intron 20.0%
!! ATATATATGAGTTTAGTGAA+AGG + chr1_4:5704710-5704729 None:intergenic 20.0%
!! AAATTGAGATATAGTATTGT+AGG - chr1_4:5704753-5704772 Msa0145990:intron 20.0%
!!! GTGAATTTTAATACATATGA+AGG - chr1_4:5704820-5704839 Msa0145990:intron 20.0%
!! GTTTAGTTATGAGATATAAA+AGG - chr1_4:5705311-5705330 Msa0145990:intron 20.0%
!!! CTTATTTAAGATGTAAATGT+TGG - chr1_4:5705585-5705604 Msa0145990:intron 20.0%
!! TGTTTATATTAAAAAACGGA+GGG + chr1_4:5706901-5706920 None:intergenic 20.0%
!! TTGTTTATATTAAAAAACGG+AGG + chr1_4:5706902-5706921 None:intergenic 20.0%
!!! ATTTTGCTTATATTTTGACA+CGG - chr1_4:5707012-5707031 Msa0145990:intron 20.0%
!!! TTCACTGACTATAATTAATA+AGG - chr1_4:5707071-5707090 Msa0145990:intron 20.0%
!!! TCACTGACTATAATTAATAA+GGG - chr1_4:5707072-5707091 Msa0145990:intron 20.0%
!!! ATTAATTGTGTTGATTTCAA+TGG + chr1_4:5707124-5707143 None:intergenic 20.0%
!! TTTCTTAAGAAATGTGAAAA+AGG + chr1_4:5707348-5707367 None:intergenic 20.0%
!!! TTGTCTCTTTTAAAAAGTAT+AGG + chr1_4:5707439-5707458 None:intergenic 20.0%
!!! TAAGCAAAAAACAACTTTTT+AGG - chr1_4:5707576-5707595 Msa0145990:intron 20.0%
!!! ATGTATCTAGTTTATAAATG+TGG + chr1_4:5707627-5707646 None:intergenic 20.0%
!!! TAAGCAAAAAACAACTTTTT+AGG + chr1_4:5707576-5707595 None:intergenic 20.0%
!! TAAAATGGAAGATATTGAAT+TGG + chr1_4:5708094-5708113 None:intergenic 20.0%
!! ACGTTAAGAAAATTGTATAA+AGG + chr1_4:5708166-5708185 None:intergenic 20.0%
!!! AAACACAAATCACTTTTAAT+CGG + chr1_4:5708270-5708289 None:intergenic 20.0%
!! ATAATTAAATGATTCACCTA+TGG - chr1_4:5708474-5708493 Msa0145990:intron 20.0%
!!! CATTTTTCATTTTCTATTGA+AGG - chr1_4:5708743-5708762 Msa0145990:intron 20.0%
!! TAAAATAAAATCAACTCTAC+TGG + chr1_4:5708857-5708876 None:intergenic 20.0%
!!! AAGACATAGTTTCTTTTTTT+GGG - chr1_4:5709354-5709373 Msa0145990:intron 20.0%
!! GAATATGTCAACTATAAATT+AGG - chr1_4:5709556-5709575 Msa0145990:intron 20.0%
!!! AGTGAAAGAAATTTTTTAGA+AGG + chr1_4:5709631-5709650 None:intergenic 20.0%
!! TAAAAGTAGAGACAAAAAAA+TGG + chr1_4:5709680-5709699 None:intergenic 20.0%
!! AGAAATGTTTAGATTATTGT+AGG - chr1_4:5709743-5709762 Msa0145990:intron 20.0%
!! AGATGAATTAACTTAAAAGT+AGG - chr1_4:5709972-5709991 Msa0145990:intron 20.0%
!! GATGAATTAACTTAAAAGTA+GGG - chr1_4:5709973-5709992 Msa0145990:intron 20.0%
!! AAGTCAAAGAAAAATCTTAA+AGG - chr1_4:5710221-5710240 Msa0145990:intron 20.0%
!! AGTCAAAGAAAAATCTTAAA+GGG - chr1_4:5710222-5710241 Msa0145990:intron 20.0%
!!! AAACTCTATATCACTTTTTA+TGG - chr1_4:5710411-5710430 Msa0145990:intron 20.0%
!!! TGTTTAACTTTAGATTTCTT+TGG + chr1_4:5710452-5710471 None:intergenic 20.0%
!! AAAAACATTCAAAGTAAAGA+TGG + chr1_4:5710942-5710961 None:intergenic 20.0%
!! AAAATAGAAATAATAAGGTG+TGG - chr1_4:5711029-5711048 Msa0145990:CDS 20.0%
! AAGTGACAATAATTATGAGA+CGG + chr1_4:5703852-5703871 None:intergenic 25.0%
! AAACGACTATTATTTAGAGA+CGG + chr1_4:5703912-5703931 None:intergenic 25.0%
! CTCTAAATAATAGTCGTTTA+AGG - chr1_4:5703913-5703932 Msa0145990:intron 25.0%
!!! TTTGTTAAACCGCTTTTTTT+TGG - chr1_4:5704286-5704305 Msa0145990:intron 25.0%
! GATTTCAGAAAAACAATCTA+AGG - chr1_4:5704372-5704391 Msa0145990:intron 25.0%
!! AGAAAAACAATCTAAGGTAA+GGG - chr1_4:5704378-5704397 Msa0145990:intron 25.0%
! GACTATCTTTCACTAATATT+AGG - chr1_4:5704404-5704423 Msa0145990:intron 25.0%
! TATAACTATATGTCTAACTG+TGG - chr1_4:5704556-5704575 Msa0145990:intron 25.0%
! ACTTGATAGAAAAAGAAAGA+CGG - chr1_4:5704903-5704922 Msa0145990:intron 25.0%
!! ATAAAAGGTAACAGACTTTT+AGG + chr1_4:5704990-5705009 None:intergenic 25.0%
!! TGCTTATATCTAAGAGTATA+AGG + chr1_4:5705161-5705180 None:intergenic 25.0%
! TTATTATATTTCCCCAGTAA+TGG - chr1_4:5705217-5705236 Msa0145990:intron 25.0%
! AGGAGATAGGAAATATATAA+TGG - chr1_4:5705257-5705276 Msa0145990:intron 25.0%
! AGATATAAAAGGAATAGTCT+GGG - chr1_4:5705322-5705341 Msa0145990:intron 25.0%
! ACTTCAAAAACAATACGTAA+AGG + chr1_4:5706441-5706460 None:intergenic 25.0%
!! TTTATGAGACTTTTATGATG+AGG - chr1_4:5706485-5706504 Msa0145990:intron 25.0%
! TTCAACAACATAAATGTCTT+TGG + chr1_4:5706519-5706538 None:intergenic 25.0%
!! TATTTACGAAATTTTCACGT+TGG - chr1_4:5706658-5706677 Msa0145990:intron 25.0%
!! ATTTACGAAATTTTCACGTT+GGG - chr1_4:5706659-5706678 Msa0145990:intron 25.0%
! AAGAGACAATTATTGTAAGA+CGG - chr1_4:5706808-5706827 Msa0145990:intron 25.0%
! CATTCATTTAATGATGTATG+TGG - chr1_4:5706939-5706958 Msa0145990:intron 25.0%
!! GTTTTACTAATAAATGCTCA+TGG - chr1_4:5707217-5707236 Msa0145990:intron 25.0%
! TTTATATATACGGATAGAGA+GGG + chr1_4:5707315-5707334 None:intergenic 25.0%
!! CAATGGAAGCTTTATATATA+CGG + chr1_4:5707325-5707344 None:intergenic 25.0%
! GGTATAAACAAATGACAATT+TGG + chr1_4:5707415-5707434 None:intergenic 25.0%
!!! TCTCTTTTAAAAAGTATAGG+AGG + chr1_4:5707436-5707455 None:intergenic 25.0%
! CTCATTTGTCTCTTATAAAA+AGG - chr1_4:5707523-5707542 Msa0145990:intron 25.0%
!! TTTTTGCTTATAAAAGTGAC+CGG + chr1_4:5707566-5707585 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr1_4:5707675-5707694 Msa0145990:intron 25.0%
!! TATAAATGTGTCACTCATTA+TGG + chr1_4:5707972-5707991 None:intergenic 25.0%
! TATTGCATTGAAAAGTGAAA+TGG + chr1_4:5708020-5708039 None:intergenic 25.0%
!! GATTAAAAGTGATTTGTGTT+TGG - chr1_4:5708269-5708288 Msa0145990:intron 25.0%
! ATCAAAACATACACTTAACA+TGG - chr1_4:5708446-5708465 Msa0145990:intron 25.0%
! TCAAAACATACACTTAACAT+GGG - chr1_4:5708447-5708466 Msa0145990:intron 25.0%
!!! TAAAAGGCATCATGAAAATA+TGG + chr1_4:5708642-5708661 None:intergenic 25.0%
! ATATAAAATGATTGTCTGAC+TGG + chr1_4:5708903-5708922 None:intergenic 25.0%
! TTCTTTAAGCATGCTAAATT+AGG + chr1_4:5709068-5709087 None:intergenic 25.0%
!! ACTTAGCACTTTTCATTATA+GGG + chr1_4:5709117-5709136 None:intergenic 25.0%
! ATTGTTTAAGCATCTAAAAG+TGG - chr1_4:5709271-5709290 Msa0145990:intron 25.0%
!! TTTTTGCATTGGAAATTGTA+CGG - chr1_4:5709297-5709316 Msa0145990:intron 25.0%
!!! CAAGACATAGTTTCTTTTTT+TGG - chr1_4:5709353-5709372 Msa0145990:intron 25.0%
!! ATTAGGGTTAAAGATGTTTT+CGG - chr1_4:5709573-5709592 Msa0145990:intron 25.0%
!! CATGTATTGTCTTCATATTT+TGG + chr1_4:5710146-5710165 None:intergenic 25.0%
!!! TAGGGAGTATTATCTTTTTT+AGG - chr1_4:5710315-5710334 Msa0145990:intron 25.0%
!!! AGGGAGTATTATCTTTTTTA+GGG - chr1_4:5710316-5710335 Msa0145990:intron 25.0%
!!! TATTTTTTGCAGGCTTATTT+AGG + chr1_4:5710380-5710399 None:intergenic 25.0%
!!! AAAGAAAGCATTAATCAACT+CGG + chr1_4:5710524-5710543 None:intergenic 25.0%
! TGAAAGAGATGGTAAATATT+TGG - chr1_4:5710618-5710637 Msa0145990:intron 25.0%
! CTGGACATTGAAATATTATT+AGG - chr1_4:5710695-5710714 Msa0145990:intron 25.0%
! ATAGAAAATTCTTGACCTTT+GGG + chr1_4:5710735-5710754 None:intergenic 25.0%
!! ATTTTTCCAAATGTTCCATA+AGG + chr1_4:5711014-5711033 None:intergenic 25.0%
TTTGAAGAAGTTAAGTCGTA+GGG + chr1_4:5703380-5703399 None:intergenic 30.0%
ATTTGAAGAAGTTAAGTCGT+AGG + chr1_4:5703381-5703400 None:intergenic 30.0%
ATACTTTGTTAAGTGCTTCT+AGG + chr1_4:5703531-5703550 None:intergenic 30.0%
AACGACTATTATTTAGAGAC+GGG + chr1_4:5703911-5703930 None:intergenic 30.0%
ATTAGTGTAAGTAGAATTGG+AGG - chr1_4:5704170-5704189 Msa0145990:intron 30.0%
TATTGGGCCTAAATAGATTT+AGG - chr1_4:5704216-5704235 Msa0145990:intron 30.0%
CACTCTTCCTAAATCTATTT+AGG + chr1_4:5704226-5704245 None:intergenic 30.0%
CTTCTTTCTCCAAAAAAAAG+CGG + chr1_4:5704298-5704317 None:intergenic 30.0%
! CAGAAAAACAATCTAAGGTA+AGG - chr1_4:5704377-5704396 Msa0145990:intron 30.0%
! TTGAGTGAGAATTGATGATT+AGG - chr1_4:5704495-5704514 Msa0145990:intron 30.0%
ACAATAGTTTCCAAGATTAG+TGG + chr1_4:5705035-5705054 None:intergenic 30.0%
GAGATATAAAAGGAATAGTC+TGG - chr1_4:5705321-5705340 Msa0145990:intron 30.0%
TAATTGACGATGAGGTTATT+TGG - chr1_4:5705420-5705439 Msa0145990:intron 30.0%
CATCTATAAATGAGTATGCA+TGG + chr1_4:5705714-5705733 None:intergenic 30.0%
TGCATACTCATTTATAGATG+AGG - chr1_4:5705714-5705733 Msa0145990:intron 30.0%
GCATACTCATTTATAGATGA+GGG - chr1_4:5705715-5705734 Msa0145990:intron 30.0%
TCATACTAAAAGACATCACA+AGG + chr1_4:5706118-5706137 None:intergenic 30.0%
!! TAATCTTTAAAACTTCGCAG+CGG + chr1_4:5706548-5706567 None:intergenic 30.0%
! ATCAGAGTATTCATCGTAAA+CGG + chr1_4:5706637-5706656 None:intergenic 30.0%
! AAATTTTCACGTTGGGAAAA+CGG - chr1_4:5706666-5706685 Msa0145990:intron 30.0%
GATGTATGTGGTTCATAATA+TGG - chr1_4:5706951-5706970 Msa0145990:intron 30.0%
CTCACAAATATAGTCGTTTA+AGG + chr1_4:5707172-5707191 None:intergenic 30.0%
CTTTATATATACGGATAGAG+AGG + chr1_4:5707316-5707335 None:intergenic 30.0%
AAGAAATGTGAAAAAGGCAA+TGG + chr1_4:5707342-5707361 None:intergenic 30.0%
!! TCAACAAAAGTTGATGTACT+TGG + chr1_4:5707503-5707522 None:intergenic 30.0%
TCTCTTATAAAAAGGACCAA+AGG - chr1_4:5707531-5707550 Msa0145990:intron 30.0%
CTCTTATAAAAAGGACCAAA+GGG - chr1_4:5707532-5707551 Msa0145990:intron 30.0%
TCGTCTAACAAATATCCAAA+GGG - chr1_4:5707907-5707926 Msa0145990:intron 30.0%
!! GAGTATTGGCGTATATAAAA+TGG + chr1_4:5708109-5708128 None:intergenic 30.0%
TAAAGGAAAGAGAGAGAAAA+TGG + chr1_4:5708149-5708168 None:intergenic 30.0%
TTAACGTGTGTTTAGTTGTA+GGG - chr1_4:5708179-5708198 Msa0145990:intron 30.0%
!! CTTGTGGCATTTTAAGTAAA+AGG + chr1_4:5708658-5708677 None:intergenic 30.0%
TCAAAAACATGTACTACATG+TGG + chr1_4:5708773-5708792 None:intergenic 30.0%
! CACTTAGCACTTTTCATTAT+AGG + chr1_4:5709118-5709137 None:intergenic 30.0%
!! ATAATGAAAAGTGCTAAGTG+TGG - chr1_4:5709118-5709137 Msa0145990:intron 30.0%
ATGCTTAAACAATGTCCTTA+GGG + chr1_4:5709264-5709283 None:intergenic 30.0%
! AAAAGTGGCAATTTTTGCAT+TGG - chr1_4:5709286-5709305 Msa0145990:intron 30.0%
!! TCAAATTGAATAAGTTGGTG+AGG - chr1_4:5709449-5709468 Msa0145990:intron 30.0%
!! CAAATTGAATAAGTTGGTGA+GGG - chr1_4:5709450-5709469 Msa0145990:intron 30.0%
!! AAATTGAATAAGTTGGTGAG+GGG - chr1_4:5709451-5709470 Msa0145990:intron 30.0%
! TGGTGATTGAAAGTTTTTGA+TGG + chr1_4:5709660-5709679 None:intergenic 30.0%
!!! AAGTGATGGTCGAAATTTTT+TGG - chr1_4:5710001-5710020 Msa0145990:intron 30.0%
!!! GGGAGTATTATCTTTTTTAG+GGG - chr1_4:5710317-5710336 Msa0145990:intron 30.0%
!!! TATTATCTTTTTTAGGGGAG+AGG - chr1_4:5710322-5710341 Msa0145990:intron 30.0%
!!! ATTATCTTTTTTAGGGGAGA+GGG - chr1_4:5710323-5710342 Msa0145990:intron 30.0%
GAAAGAAAAAATGCTAGAAG+TGG + chr1_4:5710573-5710592 None:intergenic 30.0%
TAGAAAATTCTTGACCTTTG+GGG + chr1_4:5710734-5710753 None:intergenic 30.0%
CATAGAAAATTCTTGACCTT+TGG + chr1_4:5710736-5710755 None:intergenic 30.0%
! CAAAGGTCAAGAATTTTCTA+TGG - chr1_4:5710734-5710753 Msa0145990:intron 30.0%
! GCCAAGAAAAACATGTTTTT+GGG - chr1_4:5710984-5711003 Msa0145990:CDS 30.0%
!! CCAAGAAAAACATGTTTTTG+GGG - chr1_4:5710985-5711004 Msa0145990:CDS 30.0%
ATAAGGTGTGGAATGATATT+AGG - chr1_4:5711041-5711060 Msa0145990:CDS 30.0%
!! AATGAAACCTCGCTTTTCTA+GGG + chr1_4:5703482-5703501 None:intergenic 35.0%
! AACAAAGTATTCGTAGCAGT+AGG - chr1_4:5703541-5703560 Msa0145990:CDS 35.0%
! ACAAAGTATTCGTAGCAGTA+GGG - chr1_4:5703542-5703561 Msa0145990:CDS 35.0%
GACAATAATTATGAGACGGA+AGG + chr1_4:5703848-5703867 None:intergenic 35.0%
ACGACTATTATTTAGAGACG+GGG + chr1_4:5703910-5703929 None:intergenic 35.0%
!! AGGTTGATGCACGATTATTA+AGG - chr1_4:5703933-5703952 Msa0145990:intron 35.0%
TTTGGAGAAAGAAGAGAAAG+AGG - chr1_4:5704304-5704323 Msa0145990:intron 35.0%
! GATTGCATCTAACGTGTTTT+AGG - chr1_4:5704441-5704460 Msa0145990:intron 35.0%
!! TTAAGTTGTTGGCTCTTTCA+TGG - chr1_4:5704855-5704874 Msa0145990:intron 35.0%
TGATAGAAAAAGAAAGACGG+AGG - chr1_4:5704906-5704925 Msa0145990:intron 35.0%
GATAGAAAAAGAAAGACGGA+GGG - chr1_4:5704907-5704926 Msa0145990:intron 35.0%
CACCAAATTATATCCAGTTG+CGG - chr1_4:5705132-5705151 Msa0145990:intron 35.0%
ATAATGGTTCTTCGAACACT+AGG - chr1_4:5705273-5705292 Msa0145990:intron 35.0%
TAAGGAGTTAATTGACGATG+AGG - chr1_4:5705412-5705431 Msa0145990:intron 35.0%
TTGACAACTTCATAACGACT+CGG + chr1_4:5705637-5705656 None:intergenic 35.0%
! ATGCATGTGGTACCATTTTA+GGG + chr1_4:5705989-5706008 None:intergenic 35.0%
! AATGCATGTGGTACCATTTT+AGG + chr1_4:5705990-5706009 None:intergenic 35.0%
ATCATGAAATGCAATGCATG+TGG + chr1_4:5706002-5706021 None:intergenic 35.0%
CATTTCATGATGATTCGAGA+TGG - chr1_4:5706011-5706030 Msa0145990:intron 35.0%
! AATTTTCACGTTGGGAAAAC+GGG - chr1_4:5706667-5706686 Msa0145990:intron 35.0%
AGACAATTATTGTAAGACGG+AGG - chr1_4:5706811-5706830 Msa0145990:intron 35.0%
GACAATTATTGTAAGACGGA+GGG - chr1_4:5706812-5706831 Msa0145990:intron 35.0%
GCTGCATTGAAATTGTAAAG+TGG + chr1_4:5706843-5706862 None:intergenic 35.0%
ATTAAAAAACGGAGGGAGTA+GGG + chr1_4:5706894-5706913 None:intergenic 35.0%
TATTAAAAAACGGAGGGAGT+AGG + chr1_4:5706895-5706914 None:intergenic 35.0%
!!! TTGCTTATATTTTGACACGG+AGG - chr1_4:5707015-5707034 Msa0145990:intron 35.0%
!!! TGCTTATATTTTGACACGGA+GGG - chr1_4:5707016-5707035 Msa0145990:intron 35.0%
GACTATATTTGTGAGACAGA+TGG - chr1_4:5707177-5707196 Msa0145990:intron 35.0%
GTCAAATTTAATACTCCCTC+CGG + chr1_4:5707697-5707716 None:intergenic 35.0%
CTCGTCTAACAAATATCCAA+AGG - chr1_4:5707906-5707925 Msa0145990:intron 35.0%
AAACGCTAACATATTCCCTT+TGG + chr1_4:5707925-5707944 None:intergenic 35.0%
TATACGCCAATACTCAACAA+TGG - chr1_4:5708114-5708133 Msa0145990:intron 35.0%
CAAGTACCATTGTTGAGTAT+TGG + chr1_4:5708123-5708142 None:intergenic 35.0%
CTTAACGTGTGTTTAGTTGT+AGG - chr1_4:5708178-5708197 Msa0145990:intron 35.0%
TACTAAACTACTCAGTACTG+TGG - chr1_4:5708603-5708622 Msa0145990:intron 35.0%
GCATCATGAAAATATGGACT+GGG + chr1_4:5708636-5708655 None:intergenic 35.0%
ACGTTATGTTTGACTACTTG+TGG + chr1_4:5708674-5708693 None:intergenic 35.0%
GATGCTTAAACAATGTCCTT+AGG + chr1_4:5709265-5709284 None:intergenic 35.0%
TTCCTTAAACAATGCCCTTA+GGG - chr1_4:5709377-5709396 Msa0145990:intron 35.0%
AAAGTAGGGATGAAAAGTGA+TGG - chr1_4:5709987-5710006 Msa0145990:intron 35.0%
TTGAAAGTAGAGACCAAAAG+TGG - chr1_4:5710173-5710192 Msa0145990:intron 35.0%
! AAGTTTACCATCACCACTTT+TGG + chr1_4:5710189-5710208 None:intergenic 35.0%
!!! AAGTGGTGATGGTAAACTTT+TGG - chr1_4:5710190-5710209 Msa0145990:intron 35.0%
!!! TTATCTTTTTTAGGGGAGAG+GGG - chr1_4:5710324-5710343 Msa0145990:intron 35.0%
TTAAACACATATCGTCGTAG+CGG - chr1_4:5710465-5710484 Msa0145990:intron 35.0%
TCTCTTTCAAACCTCCATAT+GGG + chr1_4:5710607-5710626 None:intergenic 35.0%
ATCTCTTTCAAACCTCCATA+TGG + chr1_4:5710608-5710627 None:intergenic 35.0%
ATATGGAGGTTTGAAAGAGA+TGG - chr1_4:5710607-5710626 Msa0145990:intron 35.0%
! GAGATGGTAAATATTTGGTG+CGG - chr1_4:5710623-5710642 Msa0145990:intron 35.0%
AGAAAATTCTTGACCTTTGG+GGG + chr1_4:5710733-5710752 None:intergenic 35.0%
TGGAATTATCCAAACTAGTC+AGG + chr1_4:5710922-5710941 None:intergenic 35.0%
! GGCCAAGAAAAACATGTTTT+TGG - chr1_4:5710983-5711002 Msa0145990:CDS 35.0%
! CCCCAAAAACATGTTTTTCT+TGG + chr1_4:5710988-5711007 None:intergenic 35.0%
AAATGGTGAGGTTTCGTAGT+GGG + chr1_4:5703414-5703433 None:intergenic 40.0%
TTGCTTGACAAGAAATGGTG+AGG + chr1_4:5703426-5703445 None:intergenic 40.0%
! TAGGCTTGCTTGACAAGAAA+TGG + chr1_4:5703431-5703450 None:intergenic 40.0%
ATATTGAGAGTGGGTAGTCT+AGG + chr1_4:5703450-5703469 None:intergenic 40.0%
TTTCGTCGGATATTGAGAGT+GGG + chr1_4:5703459-5703478 None:intergenic 40.0%
!! GAATGAAACCTCGCTTTTCT+AGG + chr1_4:5703483-5703502 None:intergenic 40.0%
! GTGCAATGCGTATTTTCTCA+GGG + chr1_4:5703582-5703601 None:intergenic 40.0%
! AGTGCAATGCGTATTTTCTC+AGG + chr1_4:5703583-5703602 None:intergenic 40.0%
GAAGAAGTCGCAGAATAATG+CGG - chr1_4:5703636-5703655 Msa0145990:intron 40.0%
GACTATTATTTAGAGACGGG+GGG + chr1_4:5703908-5703927 None:intergenic 40.0%
CGACTATTATTTAGAGACGG+GGG + chr1_4:5703909-5703928 None:intergenic 40.0%
AGTGAGTGATCCACTAATCT+TGG - chr1_4:5705022-5705041 Msa0145990:intron 40.0%
TGCCGCAACTGGATATAATT+TGG + chr1_4:5705137-5705156 None:intergenic 40.0%
AGCAATCAAGTATGCTGAGT+CGG - chr1_4:5705177-5705196 Msa0145990:intron 40.0%
ATCTCCTATGTCATCCCTAT+CGG + chr1_4:5705244-5705263 None:intergenic 40.0%
ATAGGGATGACATAGGAGAT+AGG - chr1_4:5705244-5705263 Msa0145990:intron 40.0%
TATTACCTGCACATTACCCA+CGG + chr1_4:5706326-5706345 None:intergenic 40.0%
TAGGATGCTCTGATACGTAA+CGG - chr1_4:5706387-5706406 Msa0145990:intron 40.0%
! ATTTTCACGTTGGGAAAACG+GGG - chr1_4:5706668-5706687 Msa0145990:intron 40.0%
! GGGGTGTTACATAGTTAAGT+TGG - chr1_4:5706687-5706706 Msa0145990:intron 40.0%
TGCTTATAAAAGTGACCGGA+GGG + chr1_4:5707562-5707581 None:intergenic 40.0%
TTGCTTATAAAAGTGACCGG+AGG + chr1_4:5707563-5707582 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr1_4:5707678-5707697 Msa0145990:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG - chr1_4:5707679-5707698 Msa0145990:intron 40.0%
GTCACTCATTATGGAACGAA+GGG + chr1_4:5707963-5707982 None:intergenic 40.0%
TGTCACTCATTATGGAACGA+AGG + chr1_4:5707964-5707983 None:intergenic 40.0%
GGCATCATGAAAATATGGAC+TGG + chr1_4:5708637-5708656 None:intergenic 40.0%
!! TAAGCTCTTAAAGAGTGCTC+CGG + chr1_4:5708967-5708986 None:intergenic 40.0%
AGCATGCTTAAAGAATGTCC+CGG - chr1_4:5709073-5709092 Msa0145990:intron 40.0%
AAATGCTAACAAGTGCCCTA+AGG - chr1_4:5709246-5709265 Msa0145990:intron 40.0%
GTTCCTTAAACAATGCCCTT+AGG - chr1_4:5709376-5709395 Msa0145990:intron 40.0%
!!! TATCTTTTTTAGGGGAGAGG+GGG - chr1_4:5710325-5710344 Msa0145990:intron 40.0%
TGATGCAACCTAAGAAGCAA+TGG - chr1_4:5710494-5710513 Msa0145990:intron 40.0%
TCGGTATTCCATTGCTTCTT+AGG + chr1_4:5710505-5710524 None:intergenic 40.0%
TTCTACATGACACACCCATA+TGG - chr1_4:5710590-5710609 Msa0145990:intron 40.0%
GGTTAGGCTGCATAATATCA+CGG + chr1_4:5710657-5710676 None:intergenic 40.0%
! TAACCAAGATTAGCATCGAG+CGG - chr1_4:5710672-5710691 Msa0145990:intron 40.0%
CGAATTCGCTTGTAGAGTAA+GGG - chr1_4:5710785-5710804 Msa0145990:intron 40.0%
TGACTGTGATGAACAAGATG+AGG - chr1_4:5710823-5710842 Msa0145990:CDS 40.0%
!! GTGCTAAAAGTGTTGTTCGT+TGG - chr1_4:5710870-5710889 Msa0145990:CDS 40.0%
!! GCTGTTTTGCAACATCTTGA+TGG - chr1_4:5710962-5710981 Msa0145990:CDS 40.0%
!!! ATGTTTTTGGGGTCACCTTA+TGG - chr1_4:5710996-5711015 Msa0145990:CDS 40.0%
AAGTTAAGTCGTAGGGAGGA+TGG + chr1_4:5703373-5703392 None:intergenic 45.0%
GAAGAAGTTAAGTCGTAGGG+AGG + chr1_4:5703377-5703396 None:intergenic 45.0%
GAAATGGTGAGGTTTCGTAG+TGG + chr1_4:5703415-5703434 None:intergenic 45.0%
GTTTCGTCGGATATTGAGAG+TGG + chr1_4:5703460-5703479 None:intergenic 45.0%
!!! TCGCTTTTCTAGGGTTTCGT+CGG + chr1_4:5703473-5703492 None:intergenic 45.0%
TTCTAGGTTTAACCCCTCTG+CGG + chr1_4:5703515-5703534 None:intergenic 45.0%
!! AGCACACTGACTCAATGGTA+TGG - chr1_4:5703605-5703624 Msa0145990:CDS 45.0%
ATCCCTATCGGACCATTACT+GGG + chr1_4:5705232-5705251 None:intergenic 45.0%
TGGTTCTTCGAACACTAGGT+TGG - chr1_4:5705277-5705296 Msa0145990:intron 45.0%
TGAGGGCTTATGCCCTAAAA+TGG - chr1_4:5705974-5705993 Msa0145990:intron 45.0%
AGGCAACATATACGCAGAAG+GGG + chr1_4:5706300-5706319 None:intergenic 45.0%
GAGGCAACATATACGCAGAA+GGG + chr1_4:5706301-5706320 None:intergenic 45.0%
AGGATGCTCTGATACGTAAC+GGG - chr1_4:5706388-5706407 Msa0145990:intron 45.0%
CATAAATGTCTTTGGCACGC+AGG + chr1_4:5706511-5706530 None:intergenic 45.0%
GAGGGAGTAGGGTATAATAG+TGG + chr1_4:5706883-5706902 None:intergenic 45.0%
CAAATGAACGCCTATCTGCA+AGG - chr1_4:5707831-5707850 Msa0145990:intron 45.0%
ACGTGTGTTTAGTTGTAGGG+TGG - chr1_4:5708182-5708201 Msa0145990:intron 45.0%
TAGTCTCTGTCTCACACCAT+AGG + chr1_4:5708493-5708512 None:intergenic 45.0%
GAAATGTTAACGAGTGTCCC+CGG - chr1_4:5708945-5708964 Msa0145990:intron 45.0%
!! AAGCTCTTAAAGAGTGCTCC+GGG + chr1_4:5708966-5708985 None:intergenic 45.0%
GCATGCTTAAAGAATGTCCC+GGG - chr1_4:5709074-5709093 Msa0145990:intron 45.0%
CATGCTTAAAGAATGTCCCG+GGG - chr1_4:5709075-5709094 Msa0145990:intron 45.0%
ATGCTTAAAGAATGTCCCGG+GGG - chr1_4:5709076-5709095 Msa0145990:intron 45.0%
! CTAAGTGTGGAGTGTCTCAT+CGG - chr1_4:5709131-5709150 Msa0145990:intron 45.0%
! TAAGTGTGGAGTGTCTCATC+GGG - chr1_4:5709132-5709151 Msa0145990:intron 45.0%
!! TGCCCTAAGGGCATTGTTTA+AGG + chr1_4:5709382-5709401 None:intergenic 45.0%
CTTGCTAACAAGTGCCCTAA+GGG + chr1_4:5709394-5709413 None:intergenic 45.0%
TCTTGCTAACAAGTGCCCTA+AGG + chr1_4:5709395-5709414 None:intergenic 45.0%
GTAGAGACCAAAAGTGGTGA+TGG - chr1_4:5710179-5710198 Msa0145990:intron 45.0%
TACATGACACACCCATATGG+AGG - chr1_4:5710593-5710612 Msa0145990:intron 45.0%
GCTCGATGCTAATCTTGGTT+AGG + chr1_4:5710673-5710692 None:intergenic 45.0%
GAATCTTAAGATGCCCCCAA+AGG - chr1_4:5710717-5710736 Msa0145990:intron 45.0%
TCTATGGACATCGTGTTGCA+AGG - chr1_4:5710750-5710769 Msa0145990:intron 45.0%
GCGAATTCGCTTGTAGAGTA+AGG - chr1_4:5710784-5710803 Msa0145990:intron 45.0%
! GCAGTCTATCCTGACTAGTT+TGG - chr1_4:5710910-5710929 Msa0145990:CDS 45.0%
GGGTCACCTTATGGAACATT+TGG - chr1_4:5711005-5711024 Msa0145990:CDS 45.0%
CAACATTCATGCACACTCAC+AGG + chr1_4:5711082-5711101 None:intergenic 45.0%
!! ATAATATTAGTTAATTAATA+AGG - chr1_4:5705394-5705413 Msa0145990:intron 5.0%
!!! ATTTTGTTTATATTAAAAAA+CGG + chr1_4:5706905-5706924 None:intergenic 5.0%
!! TAAAAGAATATAAATATAAT+TGG - chr1_4:5709221-5709240 Msa0145990:intron 5.0%
!! AAAAGAATATAAATATAATT+GGG - chr1_4:5709222-5709241 Msa0145990:intron 5.0%
!!! ATTAAATATTTTTTTTTGAA+AGG - chr1_4:5709804-5709823 Msa0145990:intron 5.0%
!!! TTTTCTTAAAAAAAAAAATT+GGG - chr1_4:5709887-5709906 Msa0145990:intron 5.0%
GACGAAACCCTAGAAAAGCG+AGG - chr1_4:5703472-5703491 Msa0145990:CDS 50.0%
!! ACTCGAGCACACTGACTCAA+TGG - chr1_4:5703600-5703619 Msa0145990:CDS 50.0%
ACTCAGAGAGAGAGAACCCT+AGG - chr1_4:5704330-5704349 Msa0145990:intron 50.0%
AGCAGCGTTCTTCGTTCCTA+GGG + chr1_4:5704349-5704368 None:intergenic 50.0%
AAGCAGCGTTCTTCGTTCCT+AGG + chr1_4:5704350-5704369 None:intergenic 50.0%
GAGTATAAGGTTGCCGCAAC+TGG + chr1_4:5705148-5705167 None:intergenic 50.0%
TTCCCCAGTAATGGTCCGAT+AGG - chr1_4:5705226-5705245 Msa0145990:intron 50.0%
TCCCCAGTAATGGTCCGATA+GGG - chr1_4:5705227-5705246 Msa0145990:intron 50.0%
TCCCTATCGGACCATTACTG+GGG + chr1_4:5705231-5705250 None:intergenic 50.0%
CATCCCTATCGGACCATTAC+TGG + chr1_4:5705233-5705252 None:intergenic 50.0%
TGGTCCGATAGGGATGACAT+AGG - chr1_4:5705237-5705256 Msa0145990:intron 50.0%
GTGGTTGAGCAAAAGCTCCA+GGG + chr1_4:5705747-5705766 None:intergenic 50.0%
! CTTTTGCTCAACCACGACGA+TGG - chr1_4:5705752-5705771 Msa0145990:intron 50.0%
AGCATAAGCTCTCATCGTCG+TGG + chr1_4:5705916-5705935 None:intergenic 50.0%
AGCATAAGCTCTCATCGTCG+TGG + chr1_4:5705916-5705935 None:intergenic 50.0%
TATGCTCAACCACGACGATG+AGG - chr1_4:5705879-5705898 Msa0145990:intron 50.0%
ATGCTCAACCACGACGATGA+GGG - chr1_4:5705931-5705950 Msa0145990:intron 50.0%
CGAGGCAACATATACGCAGA+AGG + chr1_4:5706302-5706321 None:intergenic 50.0%
GTATATGTTGCCTCGACCGT+GGG - chr1_4:5706307-5706326 Msa0145990:intron 50.0%
AGACTCCTCACATCGTGTCT+AGG - chr1_4:5706368-5706387 Msa0145990:intron 50.0%
AGCATCCTAGACACGATGTG+AGG + chr1_4:5706376-5706395 None:intergenic 50.0%
! TGCTCTGATACGTAACGGGA+TGG - chr1_4:5706392-5706411 Msa0145990:intron 50.0%
! GCTCTGATACGTAACGGGAT+GGG - chr1_4:5706393-5706412 Msa0145990:intron 50.0%
! CTCTGATACGTAACGGGATG+GGG - chr1_4:5706394-5706413 Msa0145990:intron 50.0%
TGAACGCCTATCTGCAAGGA+CGG - chr1_4:5707835-5707854 Msa0145990:intron 50.0%
!! AGCTCTTAAAGAGTGCTCCG+GGG + chr1_4:5708965-5708984 None:intergenic 50.0%
CTCTACAAGCGAATTCGCGT+GGG + chr1_4:5710782-5710801 None:intergenic 50.0%
ACTCTACAAGCGAATTCGCG+TGG + chr1_4:5710783-5710802 None:intergenic 50.0%
! GAGTAAGGGCATGCAATGTC+TGG - chr1_4:5710799-5710818 Msa0145990:intron 50.0%
GTTGTTCGTTGGCAGCATAC+TGG - chr1_4:5710881-5710900 Msa0145990:CDS 50.0%
GTTGGCAGCATACTGGATTG+TGG - chr1_4:5710888-5710907 Msa0145990:CDS 50.0%
CATTCATGCACACTCACAGG+TGG + chr1_4:5711079-5711098 None:intergenic 50.0%
AGTCGTAGGGAGGATGGAAG+AGG + chr1_4:5703367-5703386 None:intergenic 55.0%
GGTTTAACCCCTCTGCGGTT+CGG + chr1_4:5703510-5703529 None:intergenic 55.0%
TCGTAGCAGTAGGGTTTCCG+CGG - chr1_4:5703551-5703570 Msa0145990:CDS 55.0%
ATAGATGAGGGCTCATGCCC+TGG - chr1_4:5705727-5705746 Msa0145990:intron 55.0%
CGTGGTTGAGCAAAAGCTCC+AGG + chr1_4:5705748-5705767 None:intergenic 55.0%
GAGCAAAAGCTCCATCGTCG+TGG + chr1_4:5705891-5705910 None:intergenic 55.0%
CGTATATGTTGCCTCGACCG+TGG - chr1_4:5706306-5706325 Msa0145990:intron 55.0%
TCTTGTTAACGAGTGCCCCC+GGG + chr1_4:5709094-5709113 None:intergenic 55.0%
! GTCTTGTTAACGAGTGCCCC+CGG + chr1_4:5709095-5709114 None:intergenic 55.0%
!!! GGGGAGAGGGGGTATTTTTG+TGG - chr1_4:5710336-5710355 Msa0145990:intron 55.0%
CAGCCGCTCGATGCTAATCT+TGG + chr1_4:5710678-5710697 None:intergenic 55.0%
! CAAGATTAGCATCGAGCGGC+TGG - chr1_4:5710676-5710695 Msa0145990:intron 55.0%
ATTCTCCGCCGAACCGCAGA+GGG - chr1_4:5703499-5703518 Msa0145990:CDS 60.0%
! TTAACCCCTCTGCGGTTCGG+CGG + chr1_4:5703507-5703526 None:intergenic 60.0%
! ATTTTCTCAGGGTCGCGCCG+CGG + chr1_4:5703571-5703590 None:intergenic 60.0%
GGCATAAGCCCTCATCGTCG+TGG + chr1_4:5705968-5705987 None:intergenic 60.0%
CTGCACATTACCCACGGTCG+AGG + chr1_4:5706320-5706339 None:intergenic 60.0%
CTCGACCGTGGGTAATGTGC+AGG - chr1_4:5706318-5706337 Msa0145990:intron 60.0%
!! GGACCAAAGGGTACTCCCTC+CGG - chr1_4:5707544-5707563 Msa0145990:intron 60.0%
!! TGACCGGAGGGAGTACCCTT+TGG + chr1_4:5707550-5707569 None:intergenic 60.0%
ACGCCTATCTGCAAGGACGG+AGG - chr1_4:5707838-5707857 Msa0145990:intron 60.0%
CGCCTATCTGCAAGGACGGA+GGG - chr1_4:5707839-5707858 Msa0145990:intron 60.0%
CTCCCTCCGTCCTTGCAGAT+AGG + chr1_4:5707844-5707863 None:intergenic 60.0%
CATTCTCCGCCGAACCGCAG+AGG - chr1_4:5703498-5703517 Msa0145990:CDS 65.0%
TTCTCCGCCGAACCGCAGAG+GGG - chr1_4:5703500-5703519 Msa0145990:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 5703334 5711105 5703334 ID=Msa0145990;Name=Msa0145990
chr1_4 mRNA 5703334 5711105 5703334 ID=Msa0145990-mRNA-1;Parent=Msa0145990;Name=Msa0145990-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|0.5|1|1|2|0|197
chr1_4 exon 5710818 5711105 5710818 ID=Msa0145990-mRNA-1:exon:2450;Parent=Msa0145990-mRNA-1
chr1_4 exon 5703334 5703639 5703334 ID=Msa0145990-mRNA-1:exon:2449;Parent=Msa0145990-mRNA-1
chr1_4 CDS 5710818 5711105 5710818 ID=Msa0145990-mRNA-1:cds;Parent=Msa0145990-mRNA-1
chr1_4 CDS 5703334 5703639 5703334 ID=Msa0145990-mRNA-1:cds;Parent=Msa0145990-mRNA-1
Gene Sequence

>Msa0145990

ATGCTGCTCTTACGTGGCAACATCTATGCTCCTCTTCCATCCTCCCTACGACTTAACTTCTTCAAATCACAAACTCACCCACTACGAAACCTCACCATTTCTTGTCAAGCAAGCCTAGACTACCCACTCTCAATATCCGACGAAACCCTAGAAAAGCGAGGTTTCATTCTCCGCCGAACCGCAGAGGGGTTAAACCTAGAAGCACTTAACAAAGTATTCGTAGCAGTAGGGTTTCCGCGGCGCGACCCTGAGAAAATACGCATTGCACTCGAGCACACTGACTCAATGAGTAAGGGCATGCAATGTCTGGCTGACTGTGATGAACAAGATGAGGATTCTATGCATTTATTCTTTGCTTGTGCTAAAAGTGTTGTTCGTTGGCAGCATACTGGATTGTGGCAGTCTATCCTGACTAGTTTGGATAATTCCATCTTTACTTTGAATGTTTTTGCTGTTTTGCAACATCTTGATGGCCAAGAAAAACATGTTTTTGGGGTCACCTTATGGAACATTTGGAAAAATAGAAATAATAAGGTGTGGAATGATATTAGGAATCTGCAGAGACCACCTGTGAGTGTGCATGAATGTTGTTAA

Protein sequence

>Msa0145990

MLLLRGNIYAPLPSSLRLNFFKSQTHPLRNLTISCQASLDYPLSISDETLEKRGFILRRTAEGLNLEALNKVFVAVGFPRRDPEKIRIALEHTDSMSKGMQCLADCDEQDEDSMHLFFACAKSVVRWQHTGLWQSILTSLDNSIFTLNVFAVLQHLDGQEKHVFGVTLWNIWKNRNNKVWNDIRNLQRPPVSVHECC*