AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0164310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0164310 MtrunA17_Chr1g0175321 97.627 295 7 0 1 295 3 297 0.0 590
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0164310 AT2G42130.4 67.986 278 82 4 23 295 24 299 2.47e-132 377
Msa0164310 AT3G58010.1 68.852 244 73 2 39 280 48 290 5.19e-126 362
Msa0164310 AT3G58010.2 68.852 244 73 2 39 280 48 290 5.19e-126 362
Msa0164310 AT2G42130.3 66.667 273 66 4 46 295 1 271 2.47e-125 358
Msa0164310 AT2G42130.2 70.445 247 67 3 23 264 24 269 9.09e-122 350
Msa0164310 AT2G42130.1 67.227 238 72 3 23 255 24 260 2.02e-109 318
Msa0164310 AT2G42130.5 71.569 204 57 1 92 295 2 204 9.33e-106 306

Find 81 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAAACAGCCATTGAAAAT+TGG 0.237831 1_4:-43495178 None:intergenic
CAATTCCTTCATCTTCTTCA+TGG 0.258486 1_4:+43495249 Msa0164310:CDS
TTTACTTAACACCTCGAATA+AGG 0.269104 1_4:-43499102 None:intergenic
CATAGGGAATTTAAAGTAAC+AGG 0.273960 1_4:-43499128 None:intergenic
TGATACTAAAACATGAAATA+TGG 0.307908 1_4:-43499197 None:intergenic
TCGAGTCTCGTTAAAACTTC+TGG 0.337043 1_4:-43499000 None:intergenic
TGGTTTGGTCCCGGATCTCC+AGG 0.339040 1_4:+43496600 Msa0164310:CDS
CGATGCATCGCCGTCATCCC+TGG 0.349723 1_4:+43499020 Msa0164310:CDS
TGGTTCTGATGCAGATAATA+AGG 0.361190 1_4:+43498962 Msa0164310:intron
CGCAAACAACCCTGGAGATC+CGG 0.368129 1_4:-43496610 None:intergenic
AACACCTAGCTTTCATAATC+TGG 0.372388 1_4:-43499054 None:intergenic
GACAAATTAGCTAAACTTGA+AGG 0.384219 1_4:-43496790 None:intergenic
AGAGTACCAGATCAGCTTAA+AGG 0.398637 1_4:+43497330 Msa0164310:CDS
GTCTCTTACGTCGTGGGCCG+AGG 0.401298 1_4:-43496474 None:intergenic
CACCCTTTCTAGAAGGTAGA+TGG 0.403986 1_4:+43496568 Msa0164310:CDS
AGATGGAACTTTGAGTGGTT+TGG 0.404432 1_4:+43496585 Msa0164310:CDS
TGCTGCTTATGCTAAGGAAA+TGG 0.412492 1_4:+43495349 Msa0164310:CDS
TACGTCGTGGGCCGAGGTGT+TGG 0.418397 1_4:-43496468 None:intergenic
TACAGGTCACCCTTTCTAGA+AGG 0.420622 1_4:+43496561 Msa0164310:intron
ATGAAAGCTAGGTGTTTGTA+TGG 0.422518 1_4:+43499061 Msa0164310:exon
GTTCCATCTACCTTCTAGAA+AGG 0.438758 1_4:-43496571 None:intergenic
TGGCCCCTCCACAGTTAACT+TGG 0.446873 1_4:-43497247 None:intergenic
AACTTTGAGTGGTTTGGTCC+CGG 0.448840 1_4:+43496591 Msa0164310:CDS
GATGTGAATGAAAGGATAAC+GGG 0.462476 1_4:+43496429 Msa0164310:CDS
AGTGCACCTTTAAGCTGATC+TGG 0.469556 1_4:-43497336 None:intergenic
TATTGTGTCACCAACAGTCT+TGG 0.471270 1_4:+43497302 Msa0164310:CDS
CTCCAGGGTTGTTTGCGGCT+AGG 0.472886 1_4:+43496616 Msa0164310:CDS
CGGATCTCCAGGGTTGTTTG+CGG 0.478646 1_4:+43496611 Msa0164310:CDS
AAAGTGTTGTTGTTCAACTT+AGG 0.480579 1_4:-43495130 None:intergenic
TTCCATCTACCTTCTAGAAA+GGG 0.488079 1_4:-43496570 None:intergenic
GCTTAAAGGTGCACTTGGGC+AGG 0.488898 1_4:+43497344 Msa0164310:CDS
ATGGATGTCTTTATCAAGGA+TGG 0.497103 1_4:+43496817 Msa0164310:CDS
TTACGTGATGCTCTCGCCGA+TGG 0.498253 1_4:+43497399 Msa0164310:CDS
TACTCCTCTTTCATTCTAAG+TGG 0.499661 1_4:-43497267 None:intergenic
TGAAACTTCTATATTCACAT+AGG 0.501299 1_4:-43499145 None:intergenic
TGATGTGAATGAAAGGATAA+CGG 0.504697 1_4:+43496428 Msa0164310:CDS
GCAAACAACCCTGGAGATCC+GGG 0.505996 1_4:-43496609 None:intergenic
TGAAAGAGGAGTATGTGGAA+GGG 0.508535 1_4:+43497277 Msa0164310:CDS
GATCAGCTTAAAGGTGCACT+TGG 0.509335 1_4:+43497339 Msa0164310:CDS
GAAGCGATTCTTTAGCAGAA+AGG 0.509807 1_4:-43495376 None:intergenic
GAAACTTCTATATTCACATA+GGG 0.514617 1_4:-43499144 None:intergenic
ATGAAAGAGGAGTATGTGGA+AGG 0.518572 1_4:+43497276 Msa0164310:CDS
GCTATGGTTCAAGTTCAAAC+TGG 0.521173 1_4:+43495320 Msa0164310:CDS
TCAGTTCAACATGGAATGGA+AGG 0.523778 1_4:-43495153 None:intergenic
CAGATAATAAGGAACACAGC+TGG 0.524577 1_4:+43498973 Msa0164310:intron
AATCTGGACTTGATTCTCCC+AGG 0.529092 1_4:-43499038 None:intergenic
AAGTCCAGATTATGAAAGCT+AGG 0.531868 1_4:+43499050 Msa0164310:CDS
GGTTTCAGTTCAACATGGAA+TGG 0.533159 1_4:-43495157 None:intergenic
TCAACCAAGTTAACTGTGGA+GGG 0.536332 1_4:+43497243 Msa0164310:CDS
ATTTCCTTAGCATAAGCAGC+AGG 0.537111 1_4:-43495347 None:intergenic
ATCCTAGCCGCAAACAACCC+TGG 0.540466 1_4:-43496618 None:intergenic
AAAGAATTGATGTGAATGAA+AGG 0.540601 1_4:+43496421 Msa0164310:CDS
AAGGTAGATGGAACTTTGAG+TGG 0.542411 1_4:+43496580 Msa0164310:CDS
CTTGATTCTCCCAGGGATGA+CGG 0.547658 1_4:-43499030 None:intergenic
GATGCATCGCCGTCATCCCT+GGG 0.548574 1_4:+43499021 Msa0164310:CDS
TAGAATGAAAGAGGAGTATG+TGG 0.549259 1_4:+43497272 Msa0164310:CDS
TACGTGATGCTCTCGCCGAT+GGG 0.553971 1_4:+43497400 Msa0164310:CDS
ATCTGGACTTGATTCTCCCA+GGG 0.556575 1_4:-43499037 None:intergenic
AGAGCATCACGTAAAGGTAC+GGG 0.563086 1_4:-43497390 None:intergenic
ACTTTCCATGAAGAAGATGA+AGG 0.563489 1_4:-43495254 None:intergenic
CTCAACCAAGTTAACTGTGG+AGG 0.564278 1_4:+43497242 Msa0164310:CDS
GAGAGCATCACGTAAAGGTA+CGG 0.569225 1_4:-43497391 None:intergenic
GCGTGGTTGCTGTAGAGCTA+TGG 0.572072 1_4:+43495304 Msa0164310:CDS
AGATAATAAGGAACACAGCT+GGG 0.572812 1_4:+43498974 Msa0164310:intron
TCGGCGAGAGCATCACGTAA+AGG 0.589648 1_4:-43497396 None:intergenic
ACTCTGTCTTCCAAGACTGT+TGG 0.591239 1_4:-43497312 None:intergenic
GGGGCCACTTAGAATGAAAG+AGG 0.591481 1_4:+43497263 Msa0164310:CDS
TTTCAACTTCACGCATCACA+TGG 0.598121 1_4:+43495276 Msa0164310:CDS
CGCATCACATGGCAGAAGCG+TGG 0.609182 1_4:+43495287 Msa0164310:CDS
TTTCAGTTTAAGGATGCAGG+TGG 0.612143 1_4:+43496360 Msa0164310:intron
GGTTTGGTCCCGGATCTCCA+GGG 0.619379 1_4:+43496601 Msa0164310:CDS
TGCACCTGCTGCTTATGCTA+AGG 0.621082 1_4:+43495343 Msa0164310:CDS
AAATTGGTTTCAGTTCAACA+TGG 0.623997 1_4:-43495162 None:intergenic
TTTGTGATTGTTGAAATACA+AGG 0.627714 1_4:-43495221 None:intergenic
ATCAGCTTAAAGGTGCACTT+GGG 0.627941 1_4:+43497340 Msa0164310:CDS
CAACCAAGTTAACTGTGGAG+GGG 0.634924 1_4:+43497244 Msa0164310:CDS
ACTTAACACCTCGAATAAGG+AGG 0.635193 1_4:-43499099 None:intergenic
TCTCTCAACCAAGTTAACTG+TGG 0.636429 1_4:+43497239 Msa0164310:CDS
AAAGGATAACGGGTCTTGAG+CGG 0.639206 1_4:+43496439 Msa0164310:CDS
CATGATCTCTTATCTCGATG+AGG 0.649034 1_4:+43498060 Msa0164310:CDS
AGCGGCTCAATCCAACACCT+CGG 0.670774 1_4:+43496457 Msa0164310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGTTAATTTATTTAGTTT+TGG + chr1_4:43495472-43495491 Msa0164310:intron 10.0%
!! TTATAATTGAAAAAACTTAT+AGG - chr1_4:43497097-43497116 None:intergenic 10.0%
!!! AATTTTAAACAAAATATGAA+AGG - chr1_4:43497182-43497201 None:intergenic 10.0%
!!! ATTTTTCTTTTCATTTTAAT+AGG + chr1_4:43498875-43498894 Msa0164310:intron 10.0%
!!! TTTTTTTTTTATTTCACTAT+TGG - chr1_4:43499273-43499292 None:intergenic 10.0%
!! TTAACAAAAATTGAAACAAT+GGG - chr1_4:43495460-43495479 None:intergenic 15.0%
!! ATTAACAAAAATTGAAACAA+TGG - chr1_4:43495461-43495480 None:intergenic 15.0%
!!! ATAATTGATTTTGATATGTT+TGG + chr1_4:43495599-43495618 Msa0164310:intron 15.0%
!!! AAACACATTATTTTTAAACT+CGG + chr1_4:43496858-43496877 Msa0164310:CDS 15.0%
!! ATATAAAATCTGTTAAGTAT+TGG + chr1_4:43497505-43497524 Msa0164310:intron 15.0%
!!! TCAATTTTTACTTTATATGA+GGG - chr1_4:43497796-43497815 None:intergenic 15.0%
!!! TTCAATTTTTACTTTATATG+AGG - chr1_4:43497797-43497816 None:intergenic 15.0%
!! TAACAAAAATTGAAACAATG+GGG - chr1_4:43495459-43495478 None:intergenic 20.0%
!! AATTTACTTAAGTGTATGTT+TGG + chr1_4:43495537-43495556 Msa0164310:intron 20.0%
!! TATATACATTCATGTAAAAG+CGG - chr1_4:43495834-43495853 None:intergenic 20.0%
!! TAATTAAATTATTGCGTGAT+TGG - chr1_4:43495947-43495966 None:intergenic 20.0%
!! ATTGAAACCAATTTATACAA+GGG + chr1_4:43495969-43495988 Msa0164310:intron 20.0%
!! ATTATAACCCTTGTATAAAT+TGG - chr1_4:43495979-43495998 None:intergenic 20.0%
!!! AACTTCATTTTATTCTTGTT+GGG - chr1_4:43496260-43496279 None:intergenic 20.0%
!! TTATTCAAAAAGCTTAGAAA+TGG - chr1_4:43496509-43496528 None:intergenic 20.0%
!!! TTTAGCTAATTTGTCAAAAA+TGG + chr1_4:43496798-43496817 Msa0164310:CDS 20.0%
!! GTTTAAAAATAATGTGTTTG+CGG - chr1_4:43496857-43496876 None:intergenic 20.0%
!!! CTCTTTTACATAATGATTTT+CGG + chr1_4:43496951-43496970 Msa0164310:intron 20.0%
!!! TGAAATAATTTTACTTTCTG+TGG - chr1_4:43496990-43497009 None:intergenic 20.0%
!! TTATTTCAAACTTTCTTGTT+AGG + chr1_4:43497002-43497021 Msa0164310:intron 20.0%
!!! TTTTCAACAACTTCAAAATA+TGG + chr1_4:43498464-43498483 Msa0164310:intron 20.0%
!!! TTCAAATTGATTTTAGTAAG+TGG - chr1_4:43498646-43498665 None:intergenic 20.0%
!!! CGGCAAATATATAATTTTAT+TGG - chr1_4:43498748-43498767 None:intergenic 20.0%
!! GAAAAAAATTGAAAAGCAAT+AGG + chr1_4:43498837-43498856 Msa0164310:intron 20.0%
!! GAGATAATTATAGGTAAAAA+TGG - chr1_4:43498913-43498932 None:intergenic 20.0%
!!! AAATATGGTTTTGTAAGAAA+TGG - chr1_4:43499185-43499204 None:intergenic 20.0%
!! TGATACTAAAACATGAAATA+TGG - chr1_4:43499200-43499219 None:intergenic 20.0%
! TTTGTGATTGTTGAAATACA+AGG - chr1_4:43495224-43495243 None:intergenic 25.0%
! AATAATCCAAAAAATGAAGC+AGG - chr1_4:43495430-43495449 None:intergenic 25.0%
!!! TGCTTCATTTTTTGGATTAT+TGG + chr1_4:43495429-43495448 Msa0164310:intron 25.0%
! TGAAGCAAATAATGAGAAAA+GGG + chr1_4:43495495-43495514 Msa0164310:intron 25.0%
! ATATACATTCATGTAAAAGC+GGG - chr1_4:43495833-43495852 None:intergenic 25.0%
! CATTGAAACCAATTTATACA+AGG + chr1_4:43495968-43495987 Msa0164310:intron 25.0%
! AATAACAGTTACAAGTAATG+AGG + chr1_4:43496017-43496036 Msa0164310:intron 25.0%
! ATTGTGATATGATAGCTAAA+AGG + chr1_4:43496041-43496060 Msa0164310:intron 25.0%
!! CAACTTCATTTTATTCTTGT+TGG - chr1_4:43496261-43496280 None:intergenic 25.0%
! AAAGAATTGATGTGAATGAA+AGG + chr1_4:43496421-43496440 Msa0164310:CDS 25.0%
!! AGCTTTTTGAATAAGATGTA+AGG + chr1_4:43496515-43496534 Msa0164310:intron 25.0%
!! GCTTTTTGAATAAGATGTAA+GGG + chr1_4:43496516-43496535 Msa0164310:intron 25.0%
! AACAATCTGAAGAAAAACTT+CGG - chr1_4:43496687-43496706 None:intergenic 25.0%
! AAAAATGGATGTCTTTATCA+AGG + chr1_4:43496813-43496832 Msa0164310:CDS 25.0%
! CGAAAATCATTATGTAAAAG+AGG - chr1_4:43496953-43496972 None:intergenic 25.0%
! AATAACTACCTGTTAAAACA+AGG - chr1_4:43497049-43497068 None:intergenic 25.0%
!!! TTGTTTTAACAGGTAGTTAT+TGG + chr1_4:43497048-43497067 Msa0164310:intron 25.0%
! ATTGAAAAAACTTATAGGCA+TGG - chr1_4:43497092-43497111 None:intergenic 25.0%
! AATCATTAGAGAAGACATAA+TGG + chr1_4:43497600-43497619 Msa0164310:intron 25.0%
!! ATTTTTACTTTATATGAGGG+TGG - chr1_4:43497793-43497812 None:intergenic 25.0%
!! ATCAGGTTTTCAGTATATAA+GGG - chr1_4:43497843-43497862 None:intergenic 25.0%
!! TATCAGGTTTTCAGTATATA+AGG - chr1_4:43497844-43497863 None:intergenic 25.0%
! AAAAATCAGTACGTAATATC+AGG - chr1_4:43497892-43497911 None:intergenic 25.0%
! ATATGTATTGTAATCTACGA+AGG - chr1_4:43498144-43498163 None:intergenic 25.0%
! AACAACTTCAAAATATGGAA+GGG + chr1_4:43498469-43498488 Msa0164310:intron 25.0%
! ATAAATTTAGGAGGAAATCT+AGG - chr1_4:43498680-43498699 None:intergenic 25.0%
! TTTCATCCAGCTATAAATTT+AGG - chr1_4:43498692-43498711 None:intergenic 25.0%
!! CCATGATTTGAGATAATTAT+AGG - chr1_4:43498922-43498941 None:intergenic 25.0%
! CCTATAATTATCTCAAATCA+TGG + chr1_4:43498919-43498938 Msa0164310:intron 25.0%
! TAATATCTGAATGATTATGC+TGG + chr1_4:43498942-43498961 Msa0164310:intron 25.0%
! GAAACTTCTATATTCACATA+GGG - chr1_4:43499147-43499166 None:intergenic 25.0%
! TGAAACTTCTATATTCACAT+AGG - chr1_4:43499148-43499167 None:intergenic 25.0%
!! TTTTAGTATCACAACAAAAG+TGG + chr1_4:43499209-43499228 Msa0164310:three_prime_UTR 25.0%
!! AAAGTGTTGTTGTTCAACTT+AGG - chr1_4:43495133-43495152 None:intergenic 30.0%
! AAATTGGTTTCAGTTCAACA+TGG - chr1_4:43495165-43495184 None:intergenic 30.0%
! GAACTGAAACCAATTTTCAA+TGG + chr1_4:43495169-43495188 Msa0164310:exon 30.0%
GTGAAGCAAATAATGAGAAA+AGG + chr1_4:43495494-43495513 Msa0164310:intron 30.0%
GAAGCAAATAATGAGAAAAG+GGG + chr1_4:43495496-43495515 Msa0164310:intron 30.0%
!! ATTTTGATGAACTATGAGTG+TGG + chr1_4:43495651-43495670 Msa0164310:intron 30.0%
CGAGTTAGAATCAGTTATAA+AGG - chr1_4:43495720-43495739 None:intergenic 30.0%
CAATTGTAGAAGCAAAATGA+CGG - chr1_4:43495784-43495803 None:intergenic 30.0%
ATATTCAACTCGCTTTCAAT+CGG + chr1_4:43495869-43495888 Msa0164310:intron 30.0%
GAACTAACTACACAAATTGT+TGG + chr1_4:43496063-43496082 Msa0164310:intron 30.0%
TGATGTGAATGAAAGGATAA+CGG + chr1_4:43496428-43496447 Msa0164310:CDS 30.0%
CTGCAAATATATATAGCACA+TGG - chr1_4:43496763-43496782 None:intergenic 30.0%
CATGTGCTATATATATTTGC+AGG + chr1_4:43496761-43496780 Msa0164310:intron 30.0%
GACAAATTAGCTAAACTTGA+AGG - chr1_4:43496793-43496812 None:intergenic 30.0%
! ACTATGTGCTGCTAATATTA+GGG + chr1_4:43497532-43497551 Msa0164310:intron 30.0%
! TGAAATGTATTTTCTCGAGT+TGG + chr1_4:43497708-43497727 Msa0164310:intron 30.0%
! AATTTTCTTTTCGCTTGTGA+TGG - chr1_4:43497748-43497767 None:intergenic 30.0%
! TGATGTCATTTCATGTTTGA+AGG + chr1_4:43498016-43498035 Msa0164310:intron 30.0%
TAACTGTTGCATTATCAGAT+TGG + chr1_4:43498240-43498259 Msa0164310:intron 30.0%
CAACAACTTCAAAATATGGA+AGG + chr1_4:43498468-43498487 Msa0164310:intron 30.0%
ATGTGAGAATGATAGAATTG+AGG - chr1_4:43498579-43498598 None:intergenic 30.0%
TTTCCTCCTAAATTTATAGC+TGG + chr1_4:43498683-43498702 Msa0164310:intron 30.0%
AGCATGTATAAGAGAATTGA+GGG - chr1_4:43498788-43498807 None:intergenic 30.0%
TAGCATGTATAAGAGAATTG+AGG - chr1_4:43498789-43498808 None:intergenic 30.0%
TCAATTCTCTTATACATGCT+AGG + chr1_4:43498788-43498807 Msa0164310:intron 30.0%
! ATATTTTACCTCCTTATTCG+AGG + chr1_4:43499091-43499110 Msa0164310:three_prime_UTR 30.0%
TTTACTTAACACCTCGAATA+AGG - chr1_4:43499105-43499124 None:intergenic 30.0%
! CATAGGGAATTTAAAGTAAC+AGG - chr1_4:43499131-43499150 None:intergenic 30.0%
CAGAAACAGCCATTGAAAAT+TGG - chr1_4:43495181-43495200 None:intergenic 35.0%
CAATTCCTTCATCTTCTTCA+TGG + chr1_4:43495249-43495268 Msa0164310:CDS 35.0%
ACTTTCCATGAAGAAGATGA+AGG - chr1_4:43495257-43495276 None:intergenic 35.0%
!!! TCCTTTCCTGCTTCATTTTT+TGG + chr1_4:43495421-43495440 Msa0164310:intron 35.0%
TCCAAAAAATGAAGCAGGAA+AGG - chr1_4:43495425-43495444 None:intergenic 35.0%
! AATTTTGCCTCATCTTAGAG+TGG - chr1_4:43495565-43495584 None:intergenic 35.0%
! TGAGGCAAAATTGATTTCAG+AGG + chr1_4:43495573-43495592 Msa0164310:intron 35.0%
GGTTCTACAACTACGAAAAT+TGG - chr1_4:43495926-43495945 None:intergenic 35.0%
! ATTGACTTAGAACGAGCTAA+AGG + chr1_4:43496111-43496130 Msa0164310:intron 35.0%
!! CCTTAAAGCATCGAGTTTAT+GGG - chr1_4:43496157-43496176 None:intergenic 35.0%
!! ACCTTAAAGCATCGAGTTTA+TGG - chr1_4:43496158-43496177 None:intergenic 35.0%
!!! AACTCGATGCTTTAAGGTTT+TGG + chr1_4:43496160-43496179 Msa0164310:intron 35.0%
!!! ACTCGATGCTTTAAGGTTTT+GGG + chr1_4:43496161-43496180 Msa0164310:intron 35.0%
AACAACAATCGAGTAAAGAC+CGG - chr1_4:43496219-43496238 None:intergenic 35.0%
AGTGAATTTGAGTACAAGCT+TGG - chr1_4:43496324-43496343 None:intergenic 35.0%
GTACTCAAATTCACTTACTC+TGG + chr1_4:43496329-43496348 Msa0164310:intron 35.0%
! GGAGACATCTTTTCAGTTTA+AGG + chr1_4:43496350-43496369 Msa0164310:intron 35.0%
! TCTTTTCAGTTTAAGGATGC+AGG + chr1_4:43496357-43496376 Msa0164310:intron 35.0%
GATGTGAATGAAAGGATAAC+GGG + chr1_4:43496429-43496448 Msa0164310:CDS 35.0%
!! TTTTTAGTCTCTTACGTCGT+GGG - chr1_4:43496483-43496502 None:intergenic 35.0%
TTCATGCTCTTTATTGCTAC+AGG + chr1_4:43496544-43496563 Msa0164310:intron 35.0%
! TTCCATCTACCTTCTAGAAA+GGG - chr1_4:43496573-43496592 None:intergenic 35.0%
CGAGATCAGGCTAAATTTAA+GGG - chr1_4:43496721-43496740 None:intergenic 35.0%
!! ATGGAAGCATTGTAACTCAA+AGG - chr1_4:43496744-43496763 None:intergenic 35.0%
ATGGATGTCTTTATCAAGGA+TGG + chr1_4:43496817-43496836 Msa0164310:CDS 35.0%
AACTACCTGTTAAAACAAGG+TGG - chr1_4:43497046-43497065 None:intergenic 35.0%
!! AAAGGTGCAAACTCTTTTCT+AGG - chr1_4:43497164-43497183 None:intergenic 35.0%
TACTCCTCTTTCATTCTAAG+TGG - chr1_4:43497270-43497289 None:intergenic 35.0%
! TAGAATGAAAGAGGAGTATG+TGG + chr1_4:43497272-43497291 Msa0164310:CDS 35.0%
GAGGTGAATATAGAAATCAG+TGG - chr1_4:43497450-43497469 None:intergenic 35.0%
! CACTATGTGCTGCTAATATT+AGG + chr1_4:43497531-43497550 Msa0164310:intron 35.0%
CACGAAACAACAGAATAAAC+AGG - chr1_4:43497558-43497577 None:intergenic 35.0%
CAAAATATGTGCACAAAGAC+AGG + chr1_4:43497918-43497937 Msa0164310:intron 35.0%
! TGTCATTTCATGTTTGAAGG+TGG + chr1_4:43498019-43498038 Msa0164310:intron 35.0%
TGCATTATCAGATTGGAATG+TGG + chr1_4:43498247-43498266 Msa0164310:intron 35.0%
! GTAAGACTTTCTGGAAATCA+AGG - chr1_4:43498338-43498357 None:intergenic 35.0%
TCTTACACTGTCATGTGTAA+AGG + chr1_4:43498352-43498371 Msa0164310:intron 35.0%
CATCCAGCTATAAATTTAGG+AGG - chr1_4:43498689-43498708 None:intergenic 35.0%
TATAGCTGGATGAAAGTTCT+AGG + chr1_4:43498697-43498716 Msa0164310:intron 35.0%
AAGAGAATTGAGGGAAACAA+CGG - chr1_4:43498779-43498798 None:intergenic 35.0%
ATGCTAGGTTTGAATGACAT+GGG + chr1_4:43498803-43498822 Msa0164310:intron 35.0%
!! TGGTTCTGATGCAGATAATA+AGG + chr1_4:43498962-43498981 Msa0164310:intron 35.0%
AGATAATAAGGAACACAGCT+GGG + chr1_4:43498974-43498993 Msa0164310:intron 35.0%
AAGTCCAGATTATGAAAGCT+AGG + chr1_4:43499050-43499069 Msa0164310:CDS 35.0%
! AACACCTAGCTTTCATAATC+TGG - chr1_4:43499057-43499076 None:intergenic 35.0%
ATGAAAGCTAGGTGTTTGTA+TGG + chr1_4:43499061-43499080 Msa0164310:exon 35.0%
TCAGTTCAACATGGAATGGA+AGG - chr1_4:43495156-43495175 None:intergenic 40.0%
GGTTTCAGTTCAACATGGAA+TGG - chr1_4:43495160-43495179 None:intergenic 40.0%
TTTCAACTTCACGCATCACA+TGG + chr1_4:43495276-43495295 Msa0164310:CDS 40.0%
! GCTATGGTTCAAGTTCAAAC+TGG + chr1_4:43495320-43495339 Msa0164310:CDS 40.0%
ATTTCCTTAGCATAAGCAGC+AGG - chr1_4:43495350-43495369 None:intergenic 40.0%
! TGCTGCTTATGCTAAGGAAA+TGG + chr1_4:43495349-43495368 Msa0164310:CDS 40.0%
GAAGCGATTCTTTAGCAGAA+AGG - chr1_4:43495379-43495398 None:intergenic 40.0%
GAAGCAGGAAAGGAAATGAA+TGG - chr1_4:43495415-43495434 None:intergenic 40.0%
!! TTTGGTTCCACTCTAAGATG+AGG + chr1_4:43495555-43495574 Msa0164310:intron 40.0%
ATGAGTGTGGTTAAGCATCA+AGG + chr1_4:43495664-43495683 Msa0164310:intron 40.0%
ACATTCATGTAAAAGCGGGT+TGG - chr1_4:43495829-43495848 None:intergenic 40.0%
ACTTAGAACGAGCTAAAGGA+AGG + chr1_4:43496115-43496134 Msa0164310:intron 40.0%
CCCATAAACTCGATGCTTTA+AGG + chr1_4:43496154-43496173 Msa0164310:intron 40.0%
TTATTCTTGTTGGGAGTCCA+GGG - chr1_4:43496251-43496270 None:intergenic 40.0%
TTTATTCTTGTTGGGAGTCC+AGG - chr1_4:43496252-43496271 None:intergenic 40.0%
TTTCAGTTTAAGGATGCAGG+TGG + chr1_4:43496360-43496379 Msa0164310:intron 40.0%
!!! GTTTTGAGAGCTTAGTCTCT+GGG + chr1_4:43496382-43496401 Msa0164310:CDS 40.0%
!!! GTTTTTAGTCTCTTACGTCG+TGG - chr1_4:43496484-43496503 None:intergenic 40.0%
! GTTCCATCTACCTTCTAGAA+AGG - chr1_4:43496574-43496593 None:intergenic 40.0%
AAGGTAGATGGAACTTTGAG+TGG + chr1_4:43496580-43496599 Msa0164310:CDS 40.0%
AGATGGAACTTTGAGTGGTT+TGG + chr1_4:43496585-43496604 Msa0164310:CDS 40.0%
GCGAGATCAGGCTAAATTTA+AGG - chr1_4:43496722-43496741 None:intergenic 40.0%
!!! AGTGTCCACCTTGTTTTAAC+AGG + chr1_4:43497038-43497057 Msa0164310:intron 40.0%
TCTCTCAACCAAGTTAACTG+TGG + chr1_4:43497239-43497258 Msa0164310:CDS 40.0%
TCAACCAAGTTAACTGTGGA+GGG + chr1_4:43497243-43497262 Msa0164310:CDS 40.0%
! ATGAAAGAGGAGTATGTGGA+AGG + chr1_4:43497276-43497295 Msa0164310:CDS 40.0%
! TGAAAGAGGAGTATGTGGAA+GGG + chr1_4:43497277-43497296 Msa0164310:CDS 40.0%
TATTGTGTCACCAACAGTCT+TGG + chr1_4:43497302-43497321 Msa0164310:CDS 40.0%
! AGAGTACCAGATCAGCTTAA+AGG + chr1_4:43497330-43497349 Msa0164310:CDS 40.0%
! ATCAGCTTAAAGGTGCACTT+GGG + chr1_4:43497340-43497359 Msa0164310:CDS 40.0%
! TAGTGGAACTTTTAGCCCAT+CGG - chr1_4:43497418-43497437 None:intergenic 40.0%
ATCAGTGGTAGCTTACTTAG+TGG - chr1_4:43497435-43497454 None:intergenic 40.0%
! TCACCTCTGAAAATGTTCTC+TGG + chr1_4:43497463-43497482 Msa0164310:intron 40.0%
! AAGCCAGAGAACATTTTCAG+AGG - chr1_4:43497469-43497488 None:intergenic 40.0%
AGGGTGGCTGGAATTATATT+TGG - chr1_4:43497777-43497796 None:intergenic 40.0%
TTACTTTATATGAGGGTGGC+TGG - chr1_4:43497789-43497808 None:intergenic 40.0%
TTCCCAACCTATTGCTTCTA+GGG - chr1_4:43497868-43497887 None:intergenic 40.0%
TTTCCCAACCTATTGCTTCT+AGG - chr1_4:43497869-43497888 None:intergenic 40.0%
CATGATCTCTTATCTCGATG+AGG + chr1_4:43498060-43498079 Msa0164310:CDS 40.0%
TGCACTAAGAAACGCATGTA+TGG + chr1_4:43498196-43498215 Msa0164310:intron 40.0%
! TATGGTTGCAACTGGTGTTT+TGG + chr1_4:43498214-43498233 Msa0164310:intron 40.0%
! GTGATGTACGTTACACCTTT+TGG + chr1_4:43498296-43498315 Msa0164310:intron 40.0%
! TTACACCTTTTGGTCATGCT+GGG + chr1_4:43498306-43498325 Msa0164310:intron 40.0%
CATGACAGTGTAAGACTTTC+TGG - chr1_4:43498347-43498366 None:intergenic 40.0%
CAGAAAGTGAAACTACTCAG+AGG - chr1_4:43498437-43498456 None:intergenic 40.0%
CTCTGAGTAGTTTCACTTTC+TGG + chr1_4:43498435-43498454 Msa0164310:intron 40.0%
! TTTTCCTCACTGTCACAGTT+TGG + chr1_4:43498496-43498515 Msa0164310:intron 40.0%
TGAGAATGAAAAATCGCCCA+GGG + chr1_4:43498530-43498549 Msa0164310:intron 40.0%
AAAATCGCCCAGGGTTTAAT+AGG + chr1_4:43498539-43498558 Msa0164310:intron 40.0%
TTCGAGACCTATTAAACCCT+GGG - chr1_4:43498549-43498568 None:intergenic 40.0%
AGGGTTTAATAGGTCTCGAA+GGG + chr1_4:43498549-43498568 Msa0164310:intron 40.0%
TTTAATAGGTCTCGAAGGGA+AGG + chr1_4:43498553-43498572 Msa0164310:intron 40.0%
! GGGAAACAACGGATTTACAT+CGG - chr1_4:43498768-43498787 None:intergenic 40.0%
CATGCTAGGTTTGAATGACA+TGG + chr1_4:43498802-43498821 Msa0164310:intron 40.0%
GTTTGAATGACATGGGAACA+TGG + chr1_4:43498810-43498829 Msa0164310:intron 40.0%
AATGACATGGGAACATGGAA+AGG + chr1_4:43498815-43498834 Msa0164310:intron 40.0%
CAGATAATAAGGAACACAGC+TGG + chr1_4:43498973-43498992 Msa0164310:intron 40.0%
TCGAGTCTCGTTAAAACTTC+TGG - chr1_4:43499003-43499022 None:intergenic 40.0%
ACTTAACACCTCGAATAAGG+AGG - chr1_4:43499102-43499121 None:intergenic 40.0%
TGTGTTGTGTGTGTGTGTGT+GGG - chr1_4:43495103-43495122 None:intergenic 45.0%
TTGTGTTGTGTGTGTGTGTG+TGG - chr1_4:43495104-43495123 None:intergenic 45.0%
!!! CGATGCTTTAAGGTTTTGGG+AGG + chr1_4:43496164-43496183 Msa0164310:intron 45.0%
!!! AAGGTTTTGGGAGGAGCTTT+TGG + chr1_4:43496173-43496192 Msa0164310:intron 45.0%
!!! AGGTTTTGGGAGGAGCTTTT+GGG + chr1_4:43496174-43496193 Msa0164310:intron 45.0%
! TTGTTGTTCCTAATGCTCCC+TGG + chr1_4:43496231-43496250 Msa0164310:intron 45.0%
!!! GGTTTTGAGAGCTTAGTCTC+TGG + chr1_4:43496381-43496400 Msa0164310:CDS 45.0%
!! AAAGGATAACGGGTCTTGAG+CGG + chr1_4:43496439-43496458 Msa0164310:CDS 45.0%
TACAGGTCACCCTTTCTAGA+AGG + chr1_4:43496561-43496580 Msa0164310:intron 45.0%
! CACCCTTTCTAGAAGGTAGA+TGG + chr1_4:43496568-43496587 Msa0164310:CDS 45.0%
!! AACTTTGAGTGGTTTGGTCC+CGG + chr1_4:43496591-43496610 Msa0164310:CDS 45.0%
TGTAACTCAAAGGCGAGATC+AGG - chr1_4:43496734-43496753 None:intergenic 45.0%
CTCAACCAAGTTAACTGTGG+AGG + chr1_4:43497242-43497261 Msa0164310:CDS 45.0%
CAACCAAGTTAACTGTGGAG+GGG + chr1_4:43497244-43497263 Msa0164310:CDS 45.0%
ACTCTGTCTTCCAAGACTGT+TGG - chr1_4:43497315-43497334 None:intergenic 45.0%
AGTGCACCTTTAAGCTGATC+TGG - chr1_4:43497339-43497358 None:intergenic 45.0%
! GATCAGCTTAAAGGTGCACT+TGG + chr1_4:43497339-43497358 Msa0164310:CDS 45.0%
! AGAGCATCACGTAAAGGTAC+GGG - chr1_4:43497393-43497412 None:intergenic 45.0%
!! GAGAGCATCACGTAAAGGTA+CGG - chr1_4:43497394-43497413 None:intergenic 45.0%
! GTTCTCTGGCTTAACTGTTC+TGG + chr1_4:43497477-43497496 Msa0164310:intron 45.0%
!! CTATTGCTTCTAGGGGTATC+AGG - chr1_4:43497860-43497879 None:intergenic 45.0%
CTGATACCCCTAGAAGCAAT+AGG + chr1_4:43497858-43497877 Msa0164310:intron 45.0%
TACCCCTAGAAGCAATAGGT+TGG + chr1_4:43497862-43497881 Msa0164310:intron 45.0%
ACCCCTAGAAGCAATAGGTT+GGG + chr1_4:43497863-43497882 Msa0164310:intron 45.0%
TCCCAACCTATTGCTTCTAG+GGG - chr1_4:43497867-43497886 None:intergenic 45.0%
AACGCATGTATGGTTGCAAC+TGG + chr1_4:43498206-43498225 Msa0164310:intron 45.0%
! GTTACACCTTTTGGTCATGC+TGG + chr1_4:43498305-43498324 Msa0164310:intron 45.0%
CATAACCCAGCATGACCAAA+AGG - chr1_4:43498314-43498333 None:intergenic 45.0%
TCATCCAAACTGTGACAGTG+AGG - chr1_4:43498503-43498522 None:intergenic 45.0%
CTGAGAATGAAAAATCGCCC+AGG + chr1_4:43498529-43498548 Msa0164310:intron 45.0%
CTTCGAGACCTATTAAACCC+TGG - chr1_4:43498550-43498569 None:intergenic 45.0%
CAGGGTTTAATAGGTCTCGA+AGG + chr1_4:43498548-43498567 Msa0164310:intron 45.0%
!! AGCTGGATGAAAGTTCTAGG+TGG + chr1_4:43498700-43498719 Msa0164310:intron 45.0%
ATCTGGACTTGATTCTCCCA+GGG - chr1_4:43499040-43499059 None:intergenic 45.0%
AATCTGGACTTGATTCTCCC+AGG - chr1_4:43499041-43499060 None:intergenic 45.0%
! TGCACCTGCTGCTTATGCTA+AGG + chr1_4:43495343-43495362 Msa0164310:CDS 50.0%
!! GCTTTTGGGTCCAAGTCTCT+TGG + chr1_4:43496188-43496207 Msa0164310:intron 50.0%
TTTGGGTCCAAGTCTCTTGG+TGG + chr1_4:43496191-43496210 Msa0164310:intron 50.0%
! TCCAAGTCTCTTGGTGGTTC+CGG + chr1_4:43496197-43496216 Msa0164310:intron 50.0%
GGGGCCACTTAGAATGAAAG+AGG + chr1_4:43497263-43497282 Msa0164310:CDS 50.0%
! CGCTTGTGATGGAGAGAAGA+TGG - chr1_4:43497737-43497756 None:intergenic 50.0%
CTTGATTCTCCCAGGGATGA+CGG - chr1_4:43499033-43499052 None:intergenic 50.0%
GCGTGGTTGCTGTAGAGCTA+TGG + chr1_4:43495304-43495323 Msa0164310:CDS 55.0%
ACCGGAACCACCAAGAGACT+TGG - chr1_4:43496201-43496220 None:intergenic 55.0%
!! TTGGGAGTCCAGGGAGCATT+AGG - chr1_4:43496242-43496261 None:intergenic 55.0%
AGCGGCTCAATCCAACACCT+CGG + chr1_4:43496457-43496476 Msa0164310:CDS 55.0%
GCAAACAACCCTGGAGATCC+GGG - chr1_4:43496612-43496631 None:intergenic 55.0%
CGCAAACAACCCTGGAGATC+CGG - chr1_4:43496613-43496632 None:intergenic 55.0%
CGGATCTCCAGGGTTGTTTG+CGG + chr1_4:43496611-43496630 Msa0164310:CDS 55.0%
ATCCTAGCCGCAAACAACCC+TGG - chr1_4:43496621-43496640 None:intergenic 55.0%
TGGCCCCTCCACAGTTAACT+TGG - chr1_4:43497250-43497269 None:intergenic 55.0%
! GCTTAAAGGTGCACTTGGGC+AGG + chr1_4:43497344-43497363 Msa0164310:CDS 55.0%
!! TCGGCGAGAGCATCACGTAA+AGG - chr1_4:43497399-43497418 None:intergenic 55.0%
TTACGTGATGCTCTCGCCGA+TGG + chr1_4:43497399-43497418 Msa0164310:CDS 55.0%
TACGTGATGCTCTCGCCGAT+GGG + chr1_4:43497400-43497419 Msa0164310:CDS 55.0%
CGCATCACATGGCAGAAGCG+TGG + chr1_4:43495287-43495306 Msa0164310:CDS 60.0%
!! TGGTTTGGTCCCGGATCTCC+AGG + chr1_4:43496600-43496619 Msa0164310:CDS 60.0%
! GGTTTGGTCCCGGATCTCCA+GGG + chr1_4:43496601-43496620 Msa0164310:CDS 60.0%
CTCCAGGGTTGTTTGCGGCT+AGG + chr1_4:43496616-43496635 Msa0164310:CDS 60.0%
GATGCATCGCCGTCATCCCT+GGG + chr1_4:43499021-43499040 Msa0164310:CDS 60.0%
TACGTCGTGGGCCGAGGTGT+TGG - chr1_4:43496471-43496490 None:intergenic 65.0%
GTCTCTTACGTCGTGGGCCG+AGG - chr1_4:43496477-43496496 None:intergenic 65.0%
CGATGCATCGCCGTCATCCC+TGG + chr1_4:43499020-43499039 Msa0164310:CDS 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 43495078 43499371 43495078 ID=Msa0164310;Name=Msa0164310
chr1_4 mRNA 43495078 43499371 43495078 ID=Msa0164310-mRNA-1;Parent=Msa0164310;Name=Msa0164310-mRNA-1;_AED=0.13;_eAED=0.13;_QI=110|1|1|1|1|1|7|300|295
chr1_4 exon 43495078 43495406 43495078 ID=Msa0164310-mRNA-1:exon:12488;Parent=Msa0164310-mRNA-1
chr1_4 exon 43496366 43496487 43496366 ID=Msa0164310-mRNA-1:exon:12489;Parent=Msa0164310-mRNA-1
chr1_4 exon 43496566 43496649 43496566 ID=Msa0164310-mRNA-1:exon:12490;Parent=Msa0164310-mRNA-1
chr1_4 exon 43496783 43496879 43496783 ID=Msa0164310-mRNA-1:exon:12491;Parent=Msa0164310-mRNA-1
chr1_4 exon 43497222 43497438 43497222 ID=Msa0164310-mRNA-1:exon:12492;Parent=Msa0164310-mRNA-1
chr1_4 exon 43498038 43498090 43498038 ID=Msa0164310-mRNA-1:exon:12493;Parent=Msa0164310-mRNA-1
chr1_4 exon 43498976 43499371 43498976 ID=Msa0164310-mRNA-1:exon:12494;Parent=Msa0164310-mRNA-1
chr1_4 five_prime_UTR 43495078 43495187 43495078 ID=Msa0164310-mRNA-1:five_prime_utr;Parent=Msa0164310-mRNA-1
chr1_4 CDS 43495188 43495406 43495188 ID=Msa0164310-mRNA-1:cds;Parent=Msa0164310-mRNA-1
chr1_4 CDS 43496366 43496487 43496366 ID=Msa0164310-mRNA-1:cds;Parent=Msa0164310-mRNA-1
chr1_4 CDS 43496566 43496649 43496566 ID=Msa0164310-mRNA-1:cds;Parent=Msa0164310-mRNA-1
chr1_4 CDS 43496783 43496879 43496783 ID=Msa0164310-mRNA-1:cds;Parent=Msa0164310-mRNA-1
chr1_4 CDS 43497222 43497438 43497222 ID=Msa0164310-mRNA-1:cds;Parent=Msa0164310-mRNA-1
chr1_4 CDS 43498038 43498090 43498038 ID=Msa0164310-mRNA-1:cds;Parent=Msa0164310-mRNA-1
chr1_4 CDS 43498976 43499071 43498976 ID=Msa0164310-mRNA-1:cds;Parent=Msa0164310-mRNA-1
chr1_4 three_prime_UTR 43499072 43499371 43499072 ID=Msa0164310-mRNA-1:three_prime_utr;Parent=Msa0164310-mRNA-1
Gene Sequence

>Msa0164310

ATGGCTGTTTCTGTATCTATTTCTGCTTCTCATCCTTGTATTTCAACAATCACAAATTGTTCAATTCCTTCATCTTCTTCATGGAAAGTTTCAACTTCACGCATCACATGGCAGAAGCGTGGTTGCTGTAGAGCTATGGTTCAAGTTCAAACTGGTGCACCTGCTGCTTATGCTAAGGAAATGGAACGCCTTTCTGCTAAAGAATCGCTTCTTCTTGCTTTTAAGGATGCAGGTGGTTTTGAGAGCTTAGTCTCTGGGAAGACAACTGAATATCAAAGAATTGATGTGAATGAAAGGATAACGGGTCTTGAGCGGCTCAATCCAACACCTCGGCCCACGACGTCACCCTTTCTAGAAGGTAGATGGAACTTTGAGTGGTTTGGTCCCGGATCTCCAGGGTTGTTTGCGGCTAGGATGATATTTGAGAATTTTCCTTCAAGTTTAGCTAATTTGTCAAAAATGGATGTCTTTATCAAGGATGGAAATGCAAAGATTACCGCAAACACATTATTTTTAAACTCGATAGAAAGCAGAATTATTCTCTCAACCAAGTTAACTGTGGAGGGGCCACTTAGAATGAAAGAGGAGTATGTGGAAGGGATTATTGTGTCACCAACAGTCTTGGAAGACAGAGTACCAGATCAGCTTAAAGGTGCACTTGGGCAGGCAGTTAATGTTTTACAACAGCTTCCCGTACCTTTACGTGATGCTCTCGCCGATGGGCTAAAAGTTCCACTAAGTGGAAGCTTTCAAAGACTCTTCATGATCTCTTATCTCGATGAGGAGATACTTATAATAAGGAACACAGCTGGGATACCAGAAGTTTTAACGAGACTCGATGCATCGCCGTCATCCCTGGGAGAATCAAGTCCAGATTATGAAAGCTAG

Protein sequence

>Msa0164310

MAVSVSISASHPCISTITNCSIPSSSSWKVSTSRITWQKRGCCRAMVQVQTGAPAAYAKEMERLSAKESLLLAFKDAGGFESLVSGKTTEYQRIDVNERITGLERLNPTPRPTTSPFLEGRWNFEWFGPGSPGLFAARMIFENFPSSLANLSKMDVFIKDGNAKITANTLFLNSIESRIILSTKLTVEGPLRMKEEYVEGIIVSPTVLEDRVPDQLKGALGQAVNVLQQLPVPLRDALADGLKVPLSGSFQRLFMISYLDEEILIIRNTAGIPEVLTRLDASPSSLGESSPDYES*