AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1102410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1102410 MtrunA17_Chr7g0231891 95.714 140 6 0 60 199 1 140 1.96e-96 276
Msa1102410 MtrunA17_Chr7g0231901 90.000 40 4 0 8 47 9 48 1.27e-17 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1102410 AT4G00030.1 74.713 174 44 0 26 199 36 209 1.98e-96 279

Find 81 sgRNAs with CRISPR-Local

Find 418 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGCTTGGTGGGGTTGTTT+TGG 0.231696 7_3:+35267128 None:intergenic
CTCTCATTCTTTCCAGTTAT+AGG 0.262596 7_3:+35262529 None:intergenic
CTTTGCACTTAACTAGTCTT+TGG 0.275001 7_3:-35262428 Msa1102410:three_prime_UTR
TTCGAGTTGCAAAGGATATC+AGG 0.283632 7_3:-35262580 Msa1102410:CDS
ATTGAGAAGGCTGGCTTGTT+TGG 0.287312 7_3:-35266983 Msa1102410:CDS
GTTTGAGAGGTGAATGGGTT+GGG 0.302248 7_3:+35267223 None:intergenic
TTCCTACTCAACTGCCTCTA+TGG 0.324444 7_3:-35262463 Msa1102410:three_prime_UTR
GGTGATTGACTTTAGTTTCA+TGG 0.349627 7_3:+35267298 None:intergenic
TGTTATATCTTTCATTCTGC+TGG 0.367200 7_3:+35262189 None:intergenic
GTTGAAAGAGTACAAGATTC+AGG 0.368354 7_3:+35262211 None:intergenic
TCGACCGAGCTTCCTATAAC+TGG 0.375626 7_3:-35262541 Msa1102410:CDS
CAGTGTTACGTGGAAAGAAC+TGG 0.383547 7_3:-35265437 Msa1102410:CDS
ATGGGAATGTGTGGTGGTGG+TGG 0.384123 7_3:+35267277 None:intergenic
GGGTCTTGAGGCCACGGTCT+TGG 0.384643 7_3:+35267149 None:intergenic
GAAGAAAAGGGAAGTGGTGG+TGG 0.399827 7_3:+35267246 None:intergenic
TGAATGGGTTGGGGAAGAAA+AGG 0.412186 7_3:+35267233 None:intergenic
TTGGTGGTTTGAGAGGTGAA+TGG 0.418869 7_3:+35267217 None:intergenic
CGGCAACTTGGCGGTTGCTA+TGG 0.431789 7_3:-35267033 Msa1102410:CDS
GGCTTGTTTGGAACTAAAGC+TGG 0.432776 7_3:-35266971 Msa1102410:CDS
GTCGAATATTGAAGTTGCTT+CGG 0.436707 7_3:-35266864 Msa1102410:CDS
GCCATGGGAATGTGTGGTGG+TGG 0.441355 7_3:+35267274 None:intergenic
ATCGATGCAATGGCCGAGCT+TGG 0.446962 7_3:-35267088 Msa1102410:CDS
AAGGGAAGTGGTGGTGGTGG+TGG 0.451258 7_3:+35267252 None:intergenic
GGTTTGAGAGGTGAATGGGT+TGG 0.461814 7_3:+35267222 None:intergenic
GTGTGGAGAGGGAGTGAGCT+TGG 0.462092 7_3:+35267348 None:intergenic
TGGTGGTTTGAGAGGTGAAT+GGG 0.462983 7_3:+35267218 None:intergenic
TACTGTACCGGTGCCAAGCT+CGG 0.464081 7_3:+35267075 None:intergenic
AACGATCGACGCTAGCTTGG+TGG 0.465210 7_3:+35267117 None:intergenic
GAATGGGTTGGGGAAGAAAA+GGG 0.466912 7_3:+35267234 None:intergenic
GAAAAGGGAAGTGGTGGTGG+TGG 0.471337 7_3:+35267249 None:intergenic
CTGTTCATCATTGAGAAGGC+TGG 0.471690 7_3:-35266992 Msa1102410:CDS
ACCATTGCCACCATTCGGAC+AGG 0.473527 7_3:-35265409 Msa1102410:CDS
TTTGAGAGGTGAATGGGTTG+GGG 0.476901 7_3:+35267224 None:intergenic
ACGATCGACGCTAGCTTGGT+GGG 0.485681 7_3:+35267118 None:intergenic
CTTTCCAGTTATAGGAAGCT+CGG 0.498636 7_3:+35262537 None:intergenic
GGGGAAGAAAAGGGAAGTGG+TGG 0.500931 7_3:+35267243 None:intergenic
GTGGCCATGGGAATGTGTGG+TGG 0.507585 7_3:+35267271 None:intergenic
GTGGTGGCCATGGGAATGTG+TGG 0.511323 7_3:+35267268 None:intergenic
GGTAACGATCGACGCTAGCT+TGG 0.512985 7_3:+35267114 None:intergenic
CCCTGTCCGAATGGTGGCAA+TGG 0.513481 7_3:+35265408 None:intergenic
GAAATACCATTGCCACCATT+CGG 0.514466 7_3:-35265414 Msa1102410:CDS
ATTCCCTGTCGGCAACTTGG+CGG 0.514923 7_3:-35267042 Msa1102410:CDS
GTGATTCCCTGTCGGCAACT+TGG 0.515452 7_3:-35267045 Msa1102410:CDS
GCAACCGCCAAGTTGCCGAC+AGG 0.517472 7_3:+35267038 None:intergenic
CGAACAAAGAAAACACCATC+AGG 0.525042 7_3:+35266887 None:intergenic
CATTAAAGAAGACAAACAAA+TGG 0.527590 7_3:+35262491 None:intergenic
GTTGGGGAAGAAAAGGGAAG+TGG 0.533661 7_3:+35267240 None:intergenic
AGTTGCCGACAGGGAATCAC+CGG 0.537341 7_3:+35267048 None:intergenic
CACGGTCTTGGTCAGAGATG+AGG 0.542439 7_3:+35267161 None:intergenic
ATCACCGGTGGTTACTGTAC+CGG 0.542477 7_3:+35267063 None:intergenic
TCGAGTTGCAAAGGATATCA+GGG 0.552456 7_3:-35262579 Msa1102410:CDS
CAACCGCCAAGTTGCCGACA+GGG 0.563353 7_3:+35267039 None:intergenic
ACGGTCTTGGTCAGAGATGA+GGG 0.570760 7_3:+35267162 None:intergenic
GCAATGGCCGAGCTTGGCAC+CGG 0.572480 7_3:-35267082 Msa1102410:CDS
TGCCACCATTCGGACAGGGT+TGG 0.580620 7_3:-35265404 Msa1102410:intron
CTATAACTGGAAAGAATGAG+AGG 0.590449 7_3:-35262528 Msa1102410:exon
TGATATCCTTTGCAACTCGA+AGG 0.591269 7_3:+35262582 None:intergenic
CGTTACCGCGATCGATGCAA+TGG 0.591819 7_3:-35267098 Msa1102410:CDS
CGATCGACGCTAGCTTGGTG+GGG 0.594228 7_3:+35267119 None:intergenic
ACCACCACCACACATTCCCA+TGG 0.596059 7_3:-35267275 Msa1102410:exon
CCATTGCCACCATTCGGACA+GGG 0.598795 7_3:-35265408 Msa1102410:CDS
TACCATAGAGGCAGTTGAGT+AGG 0.600027 7_3:+35262461 None:intergenic
TGATGACCTTCGAGTTGCAA+AGG 0.605710 7_3:-35262588 Msa1102410:CDS
TTTACGAGTGCAGTGTTACG+TGG 0.607226 7_3:-35265447 Msa1102410:CDS
AGACATAATTGATACCATAG+AGG 0.607702 7_3:+35262449 None:intergenic
GCAGCTGTTCATCATTGAGA+AGG 0.611613 7_3:-35266996 Msa1102410:CDS
CTTGGTCAGAGATGAGGGTG+AGG 0.611807 7_3:+35267167 None:intergenic
ACTTACCAACCCTGTCCGAA+TGG 0.612493 7_3:+35265399 None:intergenic
ACAAACAATATGATATACAA+AGG 0.628535 7_3:+35262313 None:intergenic
GTTGCTATGGACTACTGAGA+AGG 0.629470 7_3:-35267020 Msa1102410:CDS
TACCAACCCTGTCCGAATGG+TGG 0.629823 7_3:+35265402 None:intergenic
GGCACCGGTACAGTAACCAC+CGG 0.635581 7_3:-35267067 Msa1102410:CDS
GGTCAGAGATGAGGGTGAGG+AGG 0.635921 7_3:+35267170 None:intergenic
AGTGTTACGTGGAAAGAACT+GGG 0.637752 7_3:-35265436 Msa1102410:CDS
CTCGGCCATTGCATCGATCG+CGG 0.641696 7_3:+35267093 None:intergenic
AACCACCGGTGATTCCCTGT+CGG 0.657904 7_3:-35267053 Msa1102410:CDS
TGCCGACAGGGAATCACCGG+TGG 0.664133 7_3:+35267051 None:intergenic
ACAAAGAAAACACCATCAGG+AGG 0.672815 7_3:+35266890 None:intergenic
CGAGTTGCAAAGGATATCAG+GGG 0.685935 7_3:-35262578 Msa1102410:CDS
CTCATCTCTGACCAAGACCG+TGG 0.686718 7_3:-35267160 Msa1102410:CDS
CAACTCGAAGGTCATCATCG+AGG 0.731436 7_3:+35262594 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTGATTAATTTTGATTT+TGG - chr7_3:35262782-35262801 Msa1102410:intron 10.0%
!! ATATTAATAATAAGACCAAT+TGG + chr7_3:35263139-35263158 None:intergenic 15.0%
!!! GCATTCTTTTTTTTTTTTTT+TGG + chr7_3:35263963-35263982 None:intergenic 15.0%
!! GTTATGAATCAAAATTAATT+TGG - chr7_3:35264019-35264038 Msa1102410:intron 15.0%
!! ATAATTATAGTTGAAACTTT+AGG - chr7_3:35264458-35264477 Msa1102410:intron 15.0%
!! TACAAAATTACCTTAAAATT+TGG - chr7_3:35264542-35264561 Msa1102410:intron 15.0%
!!! TGCAAAATATTAGATTTTAT+TGG - chr7_3:35266170-35266189 Msa1102410:intron 15.0%
!! TACAATTTATTAATAACCAA+AGG + chr7_3:35266241-35266260 None:intergenic 15.0%
!! TTTGGTTATTAATAAATTGT+AGG - chr7_3:35266240-35266259 Msa1102410:intron 15.0%
!! TTGGTTATTAATAAATTGTA+GGG - chr7_3:35266241-35266260 Msa1102410:intron 15.0%
!!! AATTTTGATTTTGGTTTAAC+TGG - chr7_3:35262791-35262810 Msa1102410:intron 20.0%
!! AACATTAGATATGTAATGTT+GGG + chr7_3:35263079-35263098 None:intergenic 20.0%
!! AAACATTAGATATGTAATGT+TGG + chr7_3:35263080-35263099 None:intergenic 20.0%
!! TTACATATCTAATGTTTAAG+CGG - chr7_3:35263083-35263102 Msa1102410:intron 20.0%
!! CAAAATTTATAGAACTCAAA+TGG + chr7_3:35263678-35263697 None:intergenic 20.0%
!!! CATTTGAGTTCTATAAATTT+TGG - chr7_3:35263676-35263695 Msa1102410:intron 20.0%
!! CAATTTATTGTTTATACAGA+TGG + chr7_3:35264280-35264299 None:intergenic 20.0%
!! AAATAGTGCTTATAAAGTTT+GGG + chr7_3:35264616-35264635 None:intergenic 20.0%
!! TAAATAGTGCTTATAAAGTT+TGG + chr7_3:35264617-35264636 None:intergenic 20.0%
!! ATTAAGGTAGGAAAAAATAT+AGG - chr7_3:35264760-35264779 Msa1102410:intron 20.0%
!!! CTCACAAATTTTTCTTAAAA+GGG + chr7_3:35264890-35264909 None:intergenic 20.0%
!! TTTCCAAAAATGACTAAAAT+AGG + chr7_3:35265352-35265371 None:intergenic 20.0%
!! TTACAATAATATACTTGAAG+AGG - chr7_3:35266637-35266656 Msa1102410:intron 20.0%
!! AATTTGATCTTTACTGATAA+TGG + chr7_3:35266705-35266724 None:intergenic 20.0%
!! ACAAACAATATGATATACAA+AGG + chr7_3:35267246-35267265 None:intergenic 20.0%
! AATTCATACATTAGGTGTTT+AGG - chr7_3:35263016-35263035 Msa1102410:intron 25.0%
! ACATTAGATATGTAATGTTG+GGG + chr7_3:35263078-35263097 None:intergenic 25.0%
! GTATAAATGAACTTTGTCAA+AGG + chr7_3:35263606-35263625 None:intergenic 25.0%
! TTGACAAAGTTCATTTATAC+AGG - chr7_3:35263606-35263625 Msa1102410:intron 25.0%
! TGACAAAGTTCATTTATACA+GGG - chr7_3:35263607-35263626 Msa1102410:intron 25.0%
! TTGATACCTATTGAAATTAC+GGG + chr7_3:35263787-35263806 None:intergenic 25.0%
! CTTGATACCTATTGAAATTA+CGG + chr7_3:35263788-35263807 None:intergenic 25.0%
! TACCTGTGAAAACTAATATT+TGG - chr7_3:35264076-35264095 Msa1102410:intron 25.0%
!! TAGGTCTAATCCAAATTTTA+AGG + chr7_3:35264555-35264574 None:intergenic 25.0%
!! CCTCACAAATTTTTCTTAAA+AGG + chr7_3:35264891-35264910 None:intergenic 25.0%
!!! CCTTTTAAGAAAAATTTGTG+AGG - chr7_3:35264888-35264907 Msa1102410:intron 25.0%
! TCTCATGGTAATAATACTTT+GGG - chr7_3:35264931-35264950 Msa1102410:intron 25.0%
! AATGACAGATTACATTATGT+CGG - chr7_3:35264955-35264974 Msa1102410:intron 25.0%
! CAAAAATGACTAAAATAGGT+TGG + chr7_3:35265348-35265367 None:intergenic 25.0%
!!! CAACCTATTTTAGTCATTTT+TGG - chr7_3:35265346-35265365 Msa1102410:intron 25.0%
!!! TTGGAAAGAATTTTTCAGAA+CGG - chr7_3:35265365-35265384 Msa1102410:intron 25.0%
!!! ATTTGGTGATGAAACAAATA+TGG - chr7_3:35265847-35265866 Msa1102410:intron 25.0%
!!! TAGATTTTATTGGTTTTAGC+CGG - chr7_3:35266180-35266199 Msa1102410:intron 25.0%
!!! CTCTTATTTATCTTTTCCTT+TGG - chr7_3:35266222-35266241 Msa1102410:intron 25.0%
!! TTTTGACAAAGATTACTTTG+AGG + chr7_3:35266326-35266345 None:intergenic 25.0%
! ATGCTACTAAAAATGATGAA+AGG + chr7_3:35266546-35266565 None:intergenic 25.0%
! ATAGAGAAACATCTTTATTG+AGG + chr7_3:35266674-35266693 None:intergenic 25.0%
! ATTTATGATCGTAAAACTAC+TGG + chr7_3:35266772-35266791 None:intergenic 25.0%
! CATTAAAGAAGACAAACAAA+TGG + chr7_3:35267068-35267087 None:intergenic 25.0%
GTTACGAGAATTCATACATT+AGG - chr7_3:35263008-35263027 Msa1102410:intron 30.0%
TTTCTGATGAACTTGAACAT+TGG - chr7_3:35263359-35263378 Msa1102410:intron 30.0%
ATAACAATGTCAAGCTTGAA+GGG + chr7_3:35263534-35263553 None:intergenic 30.0%
TATAACAATGTCAAGCTTGA+AGG + chr7_3:35263535-35263554 None:intergenic 30.0%
TGATACCTATTGAAATTACG+GGG + chr7_3:35263786-35263805 None:intergenic 30.0%
CGTAATTTCAATAGGTATCA+AGG - chr7_3:35263786-35263805 Msa1102410:intron 30.0%
!!! GACCAAATATTAGTTTTCAC+AGG + chr7_3:35264081-35264100 None:intergenic 30.0%
AGTATTATTACCATGAGACT+CGG + chr7_3:35264929-35264948 None:intergenic 30.0%
GTCTCATGGTAATAATACTT+TGG - chr7_3:35264930-35264949 Msa1102410:intron 30.0%
CTCATGGTAATAATACTTTG+GGG - chr7_3:35264932-35264951 Msa1102410:intron 30.0%
GAGTTTCTTAATCCATATAC+TGG - chr7_3:35264996-35265015 Msa1102410:intron 30.0%
!!! TATCAAGTTTTTTCACCTGA+GGG - chr7_3:35265078-35265097 Msa1102410:intron 30.0%
AATCTATGTCGATATCTTCT+CGG + chr7_3:35265143-35265162 None:intergenic 30.0%
TAAGTCTGCCTAAATCAAAA+GGG - chr7_3:35265169-35265188 Msa1102410:intron 30.0%
!! AAAGAATTTTTCAGAACGGA+AGG - chr7_3:35265369-35265388 Msa1102410:intron 30.0%
!! AAGAATTTTTCAGAACGGAA+GGG - chr7_3:35265370-35265389 Msa1102410:intron 30.0%
GTTCAGAACAACAAAATACT+TGG - chr7_3:35265487-35265506 Msa1102410:intron 30.0%
AGAACAACAAAATACTTGGA+CGG - chr7_3:35265491-35265510 Msa1102410:intron 30.0%
TAAACCATCCAAAATTCAAG+TGG - chr7_3:35265733-35265752 Msa1102410:intron 30.0%
AAACCATCCAAAATTCAAGT+GGG - chr7_3:35265734-35265753 Msa1102410:intron 30.0%
GGAAATAATACAAGTGGAAA+AGG + chr7_3:35266277-35266296 None:intergenic 30.0%
AAGGATGGAAATAATACAAG+TGG + chr7_3:35266283-35266302 None:intergenic 30.0%
!! TTACTTTGAGGTGTATAAGA+TGG + chr7_3:35266314-35266333 None:intergenic 30.0%
ACTAAAAATGATGAAAGGAG+TGG + chr7_3:35266541-35266560 None:intergenic 30.0%
TTCCTCTATGTGCTATAAAT+TGG + chr7_3:35266605-35266624 None:intergenic 30.0%
!! TGATCTTTACTGATAATGGT+TGG + chr7_3:35266701-35266720 None:intergenic 30.0%
!! GATCATAAATCTTAGCTTTG+TGG - chr7_3:35266782-35266801 Msa1102410:intron 30.0%
GGTGTAGAAAAAGGTAAAAT+GGG + chr7_3:35266827-35266846 None:intergenic 30.0%
AGGTGTAGAAAAAGGTAAAA+TGG + chr7_3:35266828-35266847 None:intergenic 30.0%
AACAATCAAGGTGTAGAAAA+AGG + chr7_3:35266836-35266855 None:intergenic 30.0%
! CATTTTGCTCAAAACAATCA+AGG + chr7_3:35266848-35266867 None:intergenic 30.0%
!!! TAGTTGCATCTTGTTTTTGT+AGG - chr7_3:35266925-35266944 Msa1102410:CDS 30.0%
AGACATAATTGATACCATAG+AGG + chr7_3:35267110-35267129 None:intergenic 30.0%
! ATCTAATCTGTATTTTGCAC+TGG + chr7_3:35267302-35267321 None:intergenic 30.0%
!!! TTGTGTGAGTTTTTAGTGTG+TGG + chr7_3:35262228-35262247 None:intergenic 35.0%
! GGTGATTGACTTTAGTTTCA+TGG + chr7_3:35262261-35262280 None:intergenic 35.0%
! TAAAGCTGGAGATGTTTTAC+AGG - chr7_3:35262599-35262618 Msa1102410:CDS 35.0%
!! GTTATTACTTTTCCTCCTGA+TGG - chr7_3:35262654-35262673 Msa1102410:intron 35.0%
!! CTGATGGTGTTTTCTTTGTT+CGG - chr7_3:35262670-35262689 Msa1102410:intron 35.0%
GTCGAATATTGAAGTTGCTT+CGG - chr7_3:35262692-35262711 Msa1102410:intron 35.0%
! TCAACATTGCTTGTTGAGTT+AGG - chr7_3:35262926-35262945 Msa1102410:intron 35.0%
!! GTGTTTAGGTGTTGAGAAAT+GGG - chr7_3:35263030-35263049 Msa1102410:intron 35.0%
!! TGTTTAGGTGTTGAGAAATG+GGG - chr7_3:35263031-35263050 Msa1102410:intron 35.0%
AAAACCTACCTAGAGATTCA+AGG + chr7_3:35263274-35263293 None:intergenic 35.0%
TAACAATGTCAAGCTTGAAG+GGG + chr7_3:35263533-35263552 None:intergenic 35.0%
ACCACTCATGTCTTAAAACA+TGG - chr7_3:35263573-35263592 Msa1102410:intron 35.0%
CCACTCATGTCTTAAAACAT+GGG - chr7_3:35263574-35263593 Msa1102410:intron 35.0%
! ATTTATACAGGGCATTAGAG+AGG - chr7_3:35263618-35263637 Msa1102410:intron 35.0%
! TTTATACAGGGCATTAGAGA+GGG - chr7_3:35263619-35263638 Msa1102410:intron 35.0%
! ATTAGAGAGGGATGTCTTTT+AGG - chr7_3:35263631-35263650 Msa1102410:intron 35.0%
GGATTAAACTATCAACCACT+TGG + chr7_3:35263819-35263838 None:intergenic 35.0%
CCAACTGAGCTATATTTACT+GGG + chr7_3:35263840-35263859 None:intergenic 35.0%
ACCAACTGAGCTATATTTAC+TGG + chr7_3:35263841-35263860 None:intergenic 35.0%
! ACGTGTCACTGTGTAAAATT+TGG - chr7_3:35263989-35264008 Msa1102410:intron 35.0%
CTGTGTAAAATTTGGTAGAC+TGG - chr7_3:35263997-35264016 Msa1102410:intron 35.0%
AAGTGGAGCAATTATGATAG+TGG - chr7_3:35264424-35264443 Msa1102410:intron 35.0%
TCTTAAAAGCCAGTGTTGTA+AGG + chr7_3:35264584-35264603 None:intergenic 35.0%
TTCCACATTGTCTAGAGATT+TGG + chr7_3:35264642-35264661 None:intergenic 35.0%
CTAGGAGCAGATTACAATTA+AGG - chr7_3:35264744-35264763 Msa1102410:intron 35.0%
GAGCAGATTACAATTAAGGT+AGG - chr7_3:35264748-35264767 Msa1102410:intron 35.0%
TAAATCCGAAAGAGATCTCT+TGG - chr7_3:35264810-35264829 Msa1102410:intron 35.0%
TGAACTCCATTGAAGAAGAA+TGG - chr7_3:35264856-35264875 Msa1102410:intron 35.0%
TTGTTGCCATTCTTCTTCAA+TGG + chr7_3:35264865-35264884 None:intergenic 35.0%
AAAATTTGTGAGGATCTGCA+TGG - chr7_3:35264898-35264917 Msa1102410:intron 35.0%
AAATTTGTGAGGATCTGCAT+GGG - chr7_3:35264899-35264918 Msa1102410:intron 35.0%
GTATTATTACCATGAGACTC+GGG + chr7_3:35264928-35264947 None:intergenic 35.0%
! TCTTAATCCATATACTGGCT+AGG - chr7_3:35265001-35265020 Msa1102410:intron 35.0%
TTATATGCCTAGCCAGTATA+TGG + chr7_3:35265011-35265030 None:intergenic 35.0%
!!! GTATCAAGTTTTTTCACCTG+AGG - chr7_3:35265077-35265096 Msa1102410:intron 35.0%
! ATGTCATTTGAAGTAGGCAA+CGG + chr7_3:35265120-35265139 None:intergenic 35.0%
GTAAGTCTGCCTAAATCAAA+AGG - chr7_3:35265168-35265187 Msa1102410:intron 35.0%
!!! GCATCAAACCCTTTTGATTT+AGG + chr7_3:35265180-35265199 None:intergenic 35.0%
!! AAAAGGGTTTGATGCCATTT+TGG - chr7_3:35265185-35265204 Msa1102410:intron 35.0%
!! GTTAATCGGTTTGGCAAATA+CGG - chr7_3:35265219-35265238 Msa1102410:intron 35.0%
!! TTAATCGGTTTGGCAAATAC+GGG - chr7_3:35265220-35265239 Msa1102410:intron 35.0%
CTATGGATCTTGCTGAATAA+AGG + chr7_3:35265266-35265285 None:intergenic 35.0%
GATGAATACACCTTATCATC+CGG - chr7_3:35265404-35265423 Msa1102410:intron 35.0%
! GAACTTTGGAAACTTACTTG+AGG - chr7_3:35265457-35265476 Msa1102410:intron 35.0%
!! TTGGACGGTTTTATACCATT+GGG - chr7_3:35265506-35265525 Msa1102410:intron 35.0%
TATACCATTGGGATGAACAA+TGG - chr7_3:35265517-35265536 Msa1102410:intron 35.0%
! CTCTAGCCATATTTGTTTCT+AGG - chr7_3:35265593-35265612 Msa1102410:intron 35.0%
GGCTTTCCTAGAAACAAATA+TGG + chr7_3:35265602-35265621 None:intergenic 35.0%
TTGTTTGAAAGCTTCATCTC+TGG + chr7_3:35265656-35265675 None:intergenic 35.0%
CAAAATTCAAGTGGGTGATT+GGG - chr7_3:35265742-35265761 Msa1102410:intron 35.0%
! AAATTCCTAGCTGTCAGTTT+TGG + chr7_3:35265831-35265850 None:intergenic 35.0%
AAAACTGACAGCTAGGAATT+TGG - chr7_3:35265830-35265849 Msa1102410:intron 35.0%
TTTAGGAAGATGCAGTTGAA+AGG + chr7_3:35265880-35265899 None:intergenic 35.0%
AGTTGTATACGTGCTTCTTT+AGG + chr7_3:35265897-35265916 None:intergenic 35.0%
AGGAGAAGGTTGAATTAGAA+GGG - chr7_3:35266045-35266064 Msa1102410:intron 35.0%
GTTGTTCGAATTTCTGTCTT+AGG - chr7_3:35266074-35266093 Msa1102410:intron 35.0%
! AGTTTTCGATGGTTGAGTTT+CGG + chr7_3:35266478-35266497 None:intergenic 35.0%
AACTTGACAGAATCCTCTAA+TGG - chr7_3:35266494-35266513 Msa1102410:intron 35.0%
GACCAATTTATAGCACATAG+AGG - chr7_3:35266600-35266619 Msa1102410:intron 35.0%
AACATGAAATGTAGCTATGG+GGG + chr7_3:35266749-35266768 None:intergenic 35.0%
GAACATGAAATGTAGCTATG+GGG + chr7_3:35266750-35266769 None:intergenic 35.0%
GGAACATGAAATGTAGCTAT+GGG + chr7_3:35266751-35266770 None:intergenic 35.0%
TGGAACATGAAATGTAGCTA+TGG + chr7_3:35266752-35266771 None:intergenic 35.0%
CTCTCATTCTTTCCAGTTAT+AGG + chr7_3:35267030-35267049 None:intergenic 35.0%
CTATAACTGGAAAGAATGAG+AGG - chr7_3:35267028-35267047 Msa1102410:CDS 35.0%
!! CTTTGCACTTAACTAGTCTT+TGG - chr7_3:35267128-35267147 Msa1102410:CDS 35.0%
! GTTGAAAGAGTACAAGATTC+AGG + chr7_3:35267348-35267367 None:intergenic 35.0%
!!! GAGTTTTTAGTGTGTGGAGA+GGG + chr7_3:35262222-35262241 None:intergenic 40.0%
!!! TGAGTTTTTAGTGTGTGGAG+AGG + chr7_3:35262223-35262242 None:intergenic 40.0%
!!! TCTTTTGTTGGTGGTTTGAG+AGG + chr7_3:35262349-35262368 None:intergenic 40.0%
!!! TTTGGCGGTTAGTCTTTTGT+TGG + chr7_3:35262361-35262380 None:intergenic 40.0%
ACAAAGAAAACACCATCAGG+AGG + chr7_3:35262669-35262688 None:intergenic 40.0%
CGAACAAAGAAAACACCATC+AGG + chr7_3:35262672-35262691 None:intergenic 40.0%
TTGTGTGTATGAGTTTCAGG+TGG + chr7_3:35262856-35262875 None:intergenic 40.0%
!! GGTGTTTAGGTGTTGAGAAA+TGG - chr7_3:35263029-35263048 Msa1102410:intron 40.0%
! TAATGTTTAAGCGGTGTCAG+TGG - chr7_3:35263092-35263111 Msa1102410:intron 40.0%
! TTTTCTGACGTACTCAAGCT+TGG - chr7_3:35263316-35263335 Msa1102410:intron 40.0%
AACAATGTCAAGCTTGAAGG+GGG + chr7_3:35263532-35263551 None:intergenic 40.0%
!!! CCCATGTTTTAAGACATGAG+TGG + chr7_3:35263577-35263596 None:intergenic 40.0%
!! ATGTCTGCACTGATTAAGAG+TGG + chr7_3:35263724-35263743 None:intergenic 40.0%
CTATTGAAATTACGGGGTTC+AGG + chr7_3:35263780-35263799 None:intergenic 40.0%
CTGAACCCCGTAATTTCAAT+AGG - chr7_3:35263778-35263797 Msa1102410:intron 40.0%
TATCAAGGTTTCTGACCAAG+TGG - chr7_3:35263801-35263820 Msa1102410:intron 40.0%
CCCAGTAAATATAGCTCAGT+TGG - chr7_3:35263837-35263856 Msa1102410:intron 40.0%
CACTATAAGTGTGGAGAAGT+GGG + chr7_3:35263913-35263932 None:intergenic 40.0%
ACACTATAAGTGTGGAGAAG+TGG + chr7_3:35263914-35263933 None:intergenic 40.0%
AGACTCACACACTATAAGTG+TGG + chr7_3:35263922-35263941 None:intergenic 40.0%
AGTGTTACGTGGAAAGAACT+GGG - chr7_3:35264120-35264139 Msa1102410:intron 40.0%
GAAATACCATTGCCACCATT+CGG - chr7_3:35264142-35264161 Msa1102410:intron 40.0%
GGAATGTGAAGCAAACAACT+AGG + chr7_3:35264259-35264278 None:intergenic 40.0%
! ACTTTTCCAACCAAAACCAC+AGG + chr7_3:35264408-35264427 None:intergenic 40.0%
!!! TGTGGTTTTGGTTGGAAAAG+TGG - chr7_3:35264407-35264426 Msa1102410:intron 40.0%
!!! CAACACTGGCTTTTAAGAGT+AGG - chr7_3:35264586-35264605 Msa1102410:intron 40.0%
GACCAAATCTCTAGACAATG+TGG - chr7_3:35264637-35264656 Msa1102410:intron 40.0%
CATTCGTGTTGGGTTTGAAT+GGG + chr7_3:35264674-35264693 None:intergenic 40.0%
TCATTCGTGTTGGGTTTGAA+TGG + chr7_3:35264675-35264694 None:intergenic 40.0%
TTCAAACCCAACACGAATGA+AGG - chr7_3:35264675-35264694 Msa1102410:intron 40.0%
GCAACCCAAATGCCAAAATT+AGG - chr7_3:35264718-35264737 Msa1102410:intron 40.0%
!! GCTGCCTAATTTTGGCATTT+GGG + chr7_3:35264725-35264744 None:intergenic 40.0%
!! AGCTGCCTAATTTTGGCATT+TGG + chr7_3:35264726-35264745 None:intergenic 40.0%
AATGCCAAAATTAGGCAGCT+AGG - chr7_3:35264726-35264745 Msa1102410:intron 40.0%
GAAACTCACGCAGTAACTTA+AGG + chr7_3:35264983-35265002 None:intergenic 40.0%
ACTTACTCCTCTTGCAAGTA+TGG + chr7_3:35265059-35265078 None:intergenic 40.0%
TGAACTTGAAAAAGTCCCTC+AGG + chr7_3:35265096-35265115 None:intergenic 40.0%
! TCTCGGATGTCATTTGAAGT+AGG + chr7_3:35265126-35265145 None:intergenic 40.0%
!!! GTTTGATGCCATTTTGGTGT+TGG - chr7_3:35265191-35265210 Msa1102410:intron 40.0%
! ATCTTGCTGAATAAAGGTGC+TGG + chr7_3:35265260-35265279 None:intergenic 40.0%
CTTGGCGAACATTTCAACTA+TGG + chr7_3:35265283-35265302 None:intergenic 40.0%
AGTTGAAATGTTCGCCAAGA+AGG - chr7_3:35265284-35265303 Msa1102410:intron 40.0%
CTTATCATCCGGAGTATGAT+GGG - chr7_3:35265415-35265434 Msa1102410:CDS 40.0%
!! TGAGGTTCTGAACAGAACTT+TGG - chr7_3:35265443-35265462 Msa1102410:CDS 40.0%
!! CTTGGACGGTTTTATACCAT+TGG - chr7_3:35265505-35265524 Msa1102410:intron 40.0%
! GATGAACAATGGTGGAACAT+CGG - chr7_3:35265528-35265547 Msa1102410:intron 40.0%
!! ATCAAGCTTGCTAATCGTCT+CGG - chr7_3:35265710-35265729 Msa1102410:intron 40.0%
! TCACCCACTTGAATTTTGGA+TGG + chr7_3:35265740-35265759 None:intergenic 40.0%
! CCAATCACCCACTTGAATTT+TGG + chr7_3:35265744-35265763 None:intergenic 40.0%
CCAAAATTCAAGTGGGTGAT+TGG - chr7_3:35265741-35265760 Msa1102410:intron 40.0%
!!! AGTTTTGGATGCAACCTGAT+AGG + chr7_3:35265816-35265835 None:intergenic 40.0%
GAGGAGAAGGTTGAATTAGA+AGG - chr7_3:35266044-35266063 Msa1102410:intron 40.0%
AGAAGGTTGAATTAGAAGGG+CGG - chr7_3:35266048-35266067 Msa1102410:intron 40.0%
! AGACTTCCATCCTTGTTTGA+AGG - chr7_3:35266141-35266160 Msa1102410:intron 40.0%
! GACTTCCATCCTTGTTTGAA+GGG - chr7_3:35266142-35266161 Msa1102410:intron 40.0%
AAAGACCCTTCAAACAAGGA+TGG + chr7_3:35266150-35266169 None:intergenic 40.0%
TGCAAAAGACCCTTCAAACA+AGG + chr7_3:35266154-35266173 None:intergenic 40.0%
TGTTCATCTGATGAGAGGAA+CGG + chr7_3:35266417-35266436 None:intergenic 40.0%
AGCAATGTTCATCTGATGAG+AGG + chr7_3:35266422-35266441 None:intergenic 40.0%
TGAACATTGCTCCAGTAACT+TGG - chr7_3:35266431-35266450 Msa1102410:intron 40.0%
GTTGGAAATGACCAAGTTAC+TGG + chr7_3:35266445-35266464 None:intergenic 40.0%
! GGATTCTGTCAAGTTTTCGA+TGG + chr7_3:35266489-35266508 None:intergenic 40.0%
GAAGAAGTTCACACCATTAG+AGG + chr7_3:35266510-35266529 None:intergenic 40.0%
ATGGTGTGAACTTCTTCCAA+CGG - chr7_3:35266513-35266532 Msa1102410:intron 40.0%
TGATATCCTTTGCAACTCGA+AGG + chr7_3:35266977-35266996 None:intergenic 40.0%
!! TTCGAGTTGCAAAGGATATC+AGG - chr7_3:35266976-35266995 Msa1102410:CDS 40.0%
! TCGAGTTGCAAAGGATATCA+GGG - chr7_3:35266977-35266996 Msa1102410:CDS 40.0%
CTTTCCAGTTATAGGAAGCT+CGG + chr7_3:35267022-35267041 None:intergenic 40.0%
!! GAATGGGTTGGGGAAGAAAA+GGG + chr7_3:35262325-35262344 None:intergenic 45.0%
!! TGAATGGGTTGGGGAAGAAA+AGG + chr7_3:35262326-35262345 None:intergenic 45.0%
!! TTTGAGAGGTGAATGGGTTG+GGG + chr7_3:35262335-35262354 None:intergenic 45.0%
! GTTTGAGAGGTGAATGGGTT+GGG + chr7_3:35262336-35262355 None:intergenic 45.0%
TGGTGGTTTGAGAGGTGAAT+GGG + chr7_3:35262341-35262360 None:intergenic 45.0%
! TTGGTGGTTTGAGAGGTGAA+TGG + chr7_3:35262342-35262361 None:intergenic 45.0%
!! TAGCTTGGTGGGGTTGTTTT+GGG + chr7_3:35262430-35262449 None:intergenic 45.0%
! GTTGCTATGGACTACTGAGA+AGG - chr7_3:35262536-35262555 Msa1102410:CDS 45.0%
GCAGCTGTTCATCATTGAGA+AGG - chr7_3:35262560-35262579 Msa1102410:CDS 45.0%
CTGTTCATCATTGAGAAGGC+TGG - chr7_3:35262564-35262583 Msa1102410:CDS 45.0%
!! ATTGAGAAGGCTGGCTTGTT+TGG - chr7_3:35262573-35262592 Msa1102410:CDS 45.0%
! GGCTTGTTTGGAACTAAAGC+TGG - chr7_3:35262585-35262604 Msa1102410:CDS 45.0%
CGCTTGTGTGTATGAGTTTC+AGG + chr7_3:35262859-35262878 None:intergenic 45.0%
TGTCAGTGGAGTTGTACTCA+TGG - chr7_3:35263106-35263125 Msa1102410:intron 45.0%
GTCAGTGGAGTTGTACTCAT+GGG - chr7_3:35263107-35263126 Msa1102410:intron 45.0%
TCAGTGGAGTTGTACTCATG+GGG - chr7_3:35263108-35263127 Msa1102410:intron 45.0%
ACTCATGGGGCAATTCCAAT+TGG - chr7_3:35263121-35263140 Msa1102410:intron 45.0%
GCTACCAACCTTGAATCTCT+AGG - chr7_3:35263263-35263282 Msa1102410:intron 45.0%
CCTACCTAGAGATTCAAGGT+TGG + chr7_3:35263270-35263289 None:intergenic 45.0%
CCAACCTTGAATCTCTAGGT+AGG - chr7_3:35263267-35263286 Msa1102410:intron 45.0%
GCTAAGGGTTAAGGAGTTAG+AGG + chr7_3:35263386-35263405 None:intergenic 45.0%
ACAATGTCAAGCTTGAAGGG+GGG + chr7_3:35263531-35263550 None:intergenic 45.0%
TCCATGGACATTGGAATGCA+GGG - chr7_3:35263864-35263883 Msa1102410:intron 45.0%
GAAATCCAGGGTTCAAACCT+CGG + chr7_3:35263891-35263910 None:intergenic 45.0%
!! TTTTTGGCCAAATAGCCCAG+TGG + chr7_3:35263947-35263966 None:intergenic 45.0%
TTTACGAGTGCAGTGTTACG+TGG - chr7_3:35264109-35264128 Msa1102410:intron 45.0%
CAGTGTTACGTGGAAAGAAC+TGG - chr7_3:35264119-35264138 Msa1102410:intron 45.0%
AACCAAAACCACAGGTGTGT+GGG + chr7_3:35264400-35264419 None:intergenic 45.0%
GAGTCAAGCTCGTTGTTAAG+AGG - chr7_3:35264504-35264523 Msa1102410:intron 45.0%
! CAGTGTTGTAAGGCTGCTTT+AGG + chr7_3:35264574-35264593 None:intergenic 45.0%
CTAAAGCAGCCTTACAACAC+TGG - chr7_3:35264572-35264591 Msa1102410:intron 45.0%
CTAGCACCTTCATTCGTGTT+GGG + chr7_3:35264684-35264703 None:intergenic 45.0%
TCTAGCACCTTCATTCGTGT+TGG + chr7_3:35264685-35264704 None:intergenic 45.0%
!! AACACGAATGAAGGTGCTAG+AGG - chr7_3:35264684-35264703 Msa1102410:intron 45.0%
! TGCTCCTAGCTGCCTAATTT+TGG + chr7_3:35264733-35264752 None:intergenic 45.0%
TCCGAAAGAGATCTCTTGGT+AGG - chr7_3:35264814-35264833 Msa1102410:intron 45.0%
GCCTACCAAGAGATCTCTTT+CGG + chr7_3:35264818-35264837 None:intergenic 45.0%
CATCATGCCATACTTGCAAG+AGG - chr7_3:35265049-35265068 Msa1102410:intron 45.0%
!!! TGATGCCATTTTGGTGTTGG+TGG - chr7_3:35265194-35265213 Msa1102410:intron 45.0%
AACCACCACCAACACCAAAA+TGG + chr7_3:35265202-35265221 None:intergenic 45.0%
!! TGGTGTTGGTGGTGGTTAAT+CGG - chr7_3:35265205-35265224 Msa1102410:intron 45.0%
!! TTGGTGGTGGTTAATCGGTT+TGG - chr7_3:35265210-35265229 Msa1102410:intron 45.0%
TGAAATGTTCGCCAAGAAGG+CGG - chr7_3:35265287-35265306 Msa1102410:intron 45.0%
ATACATCCGTAGTGAGTGAC+AGG - chr7_3:35265319-35265338 Msa1102410:intron 45.0%
TACATCCGTAGTGAGTGACA+GGG - chr7_3:35265320-35265339 Msa1102410:intron 45.0%
! TTTTCAGAACGGAAGGGACA+AGG - chr7_3:35265376-35265395 Msa1102410:intron 45.0%
CCATCATACTCCGGATGATA+AGG + chr7_3:35265417-35265436 None:intergenic 45.0%
CCTTATCATCCGGAGTATGA+TGG - chr7_3:35265414-35265433 Msa1102410:CDS 45.0%
TCAGCTTTCCCATCATACTC+CGG + chr7_3:35265426-35265445 None:intergenic 45.0%
ACCATTGGGATGAACAATGG+TGG - chr7_3:35265520-35265539 Msa1102410:intron 45.0%
TCCACCATTGTTCATCCCAA+TGG + chr7_3:35265524-35265543 None:intergenic 45.0%
TGGTGGAACATCGGTAATCA+AGG - chr7_3:35265537-35265556 Msa1102410:intron 45.0%
GGTGGAACATCGGTAATCAA+GGG - chr7_3:35265538-35265557 Msa1102410:intron 45.0%
GTGGAACATCGGTAATCAAG+GGG - chr7_3:35265539-35265558 Msa1102410:intron 45.0%
! TTCTAGGAAAGCCTTTGTCG+AGG - chr7_3:35265609-35265628 Msa1102410:intron 45.0%
CTGCCTGTTAGGATGAATGA+GGG + chr7_3:35265784-35265803 None:intergenic 45.0%
TGCATCCAAAACTGACAGCT+AGG - chr7_3:35265823-35265842 Msa1102410:intron 45.0%
GACGTTTAGGAACTGAAGTC+TGG + chr7_3:35266018-35266037 None:intergenic 45.0%
GTTCCTAAACGTCAAGTTCG+AGG - chr7_3:35266025-35266044 Msa1102410:intron 45.0%
TCTCCTCGAACTTGACGTTT+AGG + chr7_3:35266031-35266050 None:intergenic 45.0%
AAACGTCAAGTTCGAGGAGA+AGG - chr7_3:35266031-35266050 Msa1102410:intron 45.0%
GAAGGTTGAATTAGAAGGGC+GGG - chr7_3:35266049-35266068 Msa1102410:intron 45.0%
AAGGTTGAATTAGAAGGGCG+GGG - chr7_3:35266050-35266069 Msa1102410:intron 45.0%
!!! TTGGTTTTAGCCGGTGCAAA+AGG - chr7_3:35266189-35266208 Msa1102410:intron 45.0%
! AGAATGCTCTCCTTTTGCAC+CGG + chr7_3:35266202-35266221 None:intergenic 45.0%
GTATAAGATGGCAGCAAGCA+AGG + chr7_3:35266302-35266321 None:intergenic 45.0%
! GGAGTAGGGCGTAGTATTTT+GGG + chr7_3:35266364-35266383 None:intergenic 45.0%
! TGGAGTAGGGCGTAGTATTT+TGG + chr7_3:35266365-35266384 None:intergenic 45.0%
AATACTACGCCCTACTCCAT+TGG - chr7_3:35266366-35266385 Msa1102410:intron 45.0%
ATGGTTGAGTTTCGGTTGCT+TGG + chr7_3:35266470-35266489 None:intergenic 45.0%
AATTGGTCCTACCTGTCTGT+CGG + chr7_3:35266588-35266607 None:intergenic 45.0%
ATGTCTGAACAATGCTGCGT+TGG - chr7_3:35266865-35266884 Msa1102410:CDS 45.0%
!! TGATGACCTTCGAGTTGCAA+AGG - chr7_3:35266968-35266987 Msa1102410:CDS 45.0%
CGAGTTGCAAAGGATATCAG+GGG - chr7_3:35266978-35266997 Msa1102410:CDS 45.0%
TTCCTACTCAACTGCCTCTA+TGG - chr7_3:35267093-35267112 Msa1102410:CDS 45.0%
TACCATAGAGGCAGTTGAGT+AGG + chr7_3:35267098-35267117 None:intergenic 45.0%
!!! TTAAATTAAATTTGTTTTTT+CGG - chr7_3:35262829-35262848 Msa1102410:intron 5.0%
!!! AAAATTTTATTTAATGATTT+AGG - chr7_3:35264207-35264226 Msa1102410:intron 5.0%
GAAGAAAAGGGAAGTGGTGG+TGG + chr7_3:35262313-35262332 None:intergenic 50.0%
GTTGGGGAAGAAAAGGGAAG+TGG + chr7_3:35262319-35262338 None:intergenic 50.0%
GGTTTGAGAGGTGAATGGGT+TGG + chr7_3:35262337-35262356 None:intergenic 50.0%
!!! GGCGGTTAGTCTTTTGTTGG+TGG + chr7_3:35262358-35262377 None:intergenic 50.0%
! GGTGAGGAGGTTCTTTTTGG+CGG + chr7_3:35262376-35262395 None:intergenic 50.0%
! GAGGGTGAGGAGGTTCTTTT+TGG + chr7_3:35262379-35262398 None:intergenic 50.0%
ACGGTCTTGGTCAGAGATGA+GGG + chr7_3:35262397-35262416 None:intergenic 50.0%
!! TGTTTTGGGTCTTGAGGCCA+CGG + chr7_3:35262416-35262435 None:intergenic 50.0%
!!! TGGGGTTGTTTTGGGTCTTG+AGG + chr7_3:35262422-35262441 None:intergenic 50.0%
!! CTAGCTTGGTGGGGTTGTTT+TGG + chr7_3:35262431-35262450 None:intergenic 50.0%
ATCACCGGTGGTTACTGTAC+CGG + chr7_3:35262496-35262515 None:intergenic 50.0%
TACACACAAGCGCGTTATCC+TGG - chr7_3:35262867-35262886 Msa1102410:intron 50.0%
ACACACAAGCGCGTTATCCT+GGG - chr7_3:35262868-35262887 Msa1102410:intron 50.0%
GTTGAGAAATGGGGAACTGC+CGG - chr7_3:35263040-35263059 Msa1102410:intron 50.0%
GTTGGGGTACAAGTTCGAAC+CGG + chr7_3:35263062-35263081 None:intergenic 50.0%
CTGGTCTGAGCTAAGGGTTA+AGG + chr7_3:35263395-35263414 None:intergenic 50.0%
! GCTCAACTGGTCTGAGCTAA+GGG + chr7_3:35263401-35263420 None:intergenic 50.0%
! AGCTCAACTGGTCTGAGCTA+AGG + chr7_3:35263402-35263421 None:intergenic 50.0%
!! TAGCTCAGTTGGTAGCTCCA+TGG - chr7_3:35263848-35263867 Msa1102410:intron 50.0%
!! GTTGGTAGCTCCATGGACAT+TGG - chr7_3:35263855-35263874 Msa1102410:intron 50.0%
CTCCATGGACATTGGAATGC+AGG - chr7_3:35263863-35263882 Msa1102410:intron 50.0%
CCATGGACATTGGAATGCAG+GGG - chr7_3:35263865-35263884 Msa1102410:intron 50.0%
GTGGAGAAGTGGGAAATCCA+GGG + chr7_3:35263903-35263922 None:intergenic 50.0%
TGTGGAGAAGTGGGAAATCC+AGG + chr7_3:35263904-35263923 None:intergenic 50.0%
TAGTGTGTGAGTCTAGCCAC+TGG - chr7_3:35263928-35263947 Msa1102410:intron 50.0%
AGTGTGTGAGTCTAGCCACT+GGG - chr7_3:35263929-35263948 Msa1102410:intron 50.0%
AGTCTAGCCACTGGGCTATT+TGG - chr7_3:35263937-35263956 Msa1102410:intron 50.0%
ACTTACCAACCCTGTCCGAA+TGG + chr7_3:35264160-35264179 None:intergenic 50.0%
AATGATCTCCCACACACCTG+TGG - chr7_3:35264389-35264408 Msa1102410:intron 50.0%
CAACCAAAACCACAGGTGTG+TGG + chr7_3:35264401-35264420 None:intergenic 50.0%
!!! CACACACCTGTGGTTTTGGT+TGG - chr7_3:35264399-35264418 Msa1102410:intron 50.0%
GGTGCTAGAGGATACACTGA+AGG - chr7_3:35264696-35264715 Msa1102410:intron 50.0%
TTCACATCCTGCCATGCTTG+TGG + chr7_3:35264840-35264859 None:intergenic 50.0%
!!! TGCCATTTTGGTGTTGGTGG+TGG - chr7_3:35265197-35265216 Msa1102410:intron 50.0%
TGGTTCCCTGTCACTCACTA+CGG + chr7_3:35265328-35265347 None:intergenic 50.0%
! GGAGTATGATGGGAAAGCTG+AGG - chr7_3:35265425-35265444 Msa1102410:CDS 50.0%
! TTGTGCTACTGCCTCGACAA+AGG + chr7_3:35265623-35265642 None:intergenic 50.0%
CCTGTTAGGATGAATGAGGG+AGG + chr7_3:35265781-35265800 None:intergenic 50.0%
CCTCCCTCATTCATCCTAAC+AGG - chr7_3:35265778-35265797 Msa1102410:intron 50.0%
CCTGCCTGTTAGGATGAATG+AGG + chr7_3:35265785-35265804 None:intergenic 50.0%
CCTCATTCATCCTAACAGGC+AGG - chr7_3:35265782-35265801 Msa1102410:intron 50.0%
GGCTTAGATACCTGCCTGTT+AGG + chr7_3:35265795-35265814 None:intergenic 50.0%
GGCAGGTATCTAAGCCTATC+AGG - chr7_3:35265799-35265818 Msa1102410:intron 50.0%
GTTGGCAGAACAGCTTCTAC+TGG + chr7_3:35265983-35266002 None:intergenic 50.0%
TGTTCTGCCAACTGAGCTTC+AGG - chr7_3:35265991-35266010 Msa1102410:intron 50.0%
AAGATGGCAGCAAGCAAGGA+TGG + chr7_3:35266298-35266317 None:intergenic 50.0%
!! GTAGGGCGTAGTATTTTGGG+AGG + chr7_3:35266361-35266380 None:intergenic 50.0%
GAGGCACAACCAATGGAGTA+GGG + chr7_3:35266378-35266397 None:intergenic 50.0%
AGGAACGGAGCAAAAGTGGT+CGG + chr7_3:35266402-35266421 None:intergenic 50.0%
TGAGAGGAACGGAGCAAAAG+TGG + chr7_3:35266406-35266425 None:intergenic 50.0%
AGTTTCGGTTGCTTGGCTGT+TGG + chr7_3:35266463-35266482 None:intergenic 50.0%
GATGAAAGGAGTGGATCCGT+TGG + chr7_3:35266532-35266551 None:intergenic 50.0%
ATTGGTCCTACCTGTCTGTC+GGG + chr7_3:35266587-35266606 None:intergenic 50.0%
AATGTAGCTATGGGGGAGAG+TGG + chr7_3:35266742-35266761 None:intergenic 50.0%
CAACTCGAAGGTCATCATCG+AGG + chr7_3:35266965-35266984 None:intergenic 50.0%
TCGACCGAGCTTCCTATAAC+TGG - chr7_3:35267015-35267034 Msa1102410:CDS 50.0%
!! ATGGGAATGTGTGGTGGTGG+TGG + chr7_3:35262282-35262301 None:intergenic 55.0%
ACCACCACCACACATTCCCA+TGG - chr7_3:35262281-35262300 Msa1102410:three_prime_UTR 55.0%
!! GAAAAGGGAAGTGGTGGTGG+TGG + chr7_3:35262310-35262329 None:intergenic 55.0%
GGGGAAGAAAAGGGAAGTGG+TGG + chr7_3:35262316-35262335 None:intergenic 55.0%
CTTGGTCAGAGATGAGGGTG+AGG + chr7_3:35262392-35262411 None:intergenic 55.0%
CACGGTCTTGGTCAGAGATG+AGG + chr7_3:35262398-35262417 None:intergenic 55.0%
CTCATCTCTGACCAAGACCG+TGG - chr7_3:35262396-35262415 Msa1102410:three_prime_UTR 55.0%
! ACGATCGACGCTAGCTTGGT+GGG + chr7_3:35262441-35262460 None:intergenic 55.0%
! AACGATCGACGCTAGCTTGG+TGG + chr7_3:35262442-35262461 None:intergenic 55.0%
GGTAACGATCGACGCTAGCT+TGG + chr7_3:35262445-35262464 None:intergenic 55.0%
CGTTACCGCGATCGATGCAA+TGG - chr7_3:35262458-35262477 Msa1102410:three_prime_UTR 55.0%
ATCGATGCAATGGCCGAGCT+TGG - chr7_3:35262468-35262487 Msa1102410:three_prime_UTR 55.0%
! TACTGTACCGGTGCCAAGCT+CGG + chr7_3:35262484-35262503 None:intergenic 55.0%
AACCACCGGTGATTCCCTGT+CGG - chr7_3:35262503-35262522 Msa1102410:three_prime_UTR 55.0%
AGTTGCCGACAGGGAATCAC+CGG + chr7_3:35262511-35262530 None:intergenic 55.0%
GTGATTCCCTGTCGGCAACT+TGG - chr7_3:35262511-35262530 Msa1102410:three_prime_UTR 55.0%
ATTCCCTGTCGGCAACTTGG+CGG - chr7_3:35262514-35262533 Msa1102410:exon 55.0%
CGTTATCCTGGGTTCGAGCT+CGG - chr7_3:35262879-35262898 Msa1102410:intron 55.0%
GTTATCCTGGGTTCGAGCTC+GGG - chr7_3:35262880-35262899 Msa1102410:intron 55.0%
GTCAAGCTTGAAGGGGGGAT+GGG + chr7_3:35263526-35263545 None:intergenic 55.0%
TGTCAAGCTTGAAGGGGGGA+TGG + chr7_3:35263527-35263546 None:intergenic 55.0%
CCCCTGCATTCCAATGTCCA+TGG + chr7_3:35263868-35263887 None:intergenic 55.0%
ACCATTGCCACCATTCGGAC+AGG - chr7_3:35264147-35264166 Msa1102410:intron 55.0%
CCATTGCCACCATTCGGACA+GGG - chr7_3:35264148-35264167 Msa1102410:intron 55.0%
TACCAACCCTGTCCGAATGG+TGG + chr7_3:35264157-35264176 None:intergenic 55.0%
! CTCCCACACACCTGTGGTTT+TGG - chr7_3:35264395-35264414 Msa1102410:intron 55.0%
CTCTTGGTAGGCCACAAGCA+TGG - chr7_3:35264826-35264845 Msa1102410:intron 55.0%
CATGGGAAACCCGAGTCTCA+TGG - chr7_3:35264916-35264935 Msa1102410:intron 55.0%
ATGCAGCTTGACCGCCTTCT+TGG + chr7_3:35265301-35265320 None:intergenic 55.0%
GTCTGGTCCTGAAGCTCAGT+TGG + chr7_3:35266001-35266020 None:intergenic 55.0%
! GGAGGCACAACCAATGGAGT+AGG + chr7_3:35266379-35266398 None:intergenic 55.0%
GAACGGAGCAAAAGTGGTCG+GGG + chr7_3:35266400-35266419 None:intergenic 55.0%
GGAACGGAGCAAAAGTGGTC+GGG + chr7_3:35266401-35266420 None:intergenic 55.0%
TCCAGTAGAACCCGACAGAC+AGG - chr7_3:35266574-35266593 Msa1102410:intron 55.0%
ACCTGTCTGTCGGGTTCTAC+TGG + chr7_3:35266578-35266597 None:intergenic 55.0%
GTAGAACCCGACAGACAGGT+AGG - chr7_3:35266578-35266597 Msa1102410:intron 55.0%
TATGGGGGAGAGTGGCAAAG+GGG + chr7_3:35266734-35266753 None:intergenic 55.0%
CTATGGGGGAGAGTGGCAAA+GGG + chr7_3:35266735-35266754 None:intergenic 55.0%
GTGTGGAGAGGGAGTGAGCT+TGG + chr7_3:35262211-35262230 None:intergenic 60.0%
GCCATGGGAATGTGTGGTGG+TGG + chr7_3:35262285-35262304 None:intergenic 60.0%
GTGGCCATGGGAATGTGTGG+TGG + chr7_3:35262288-35262307 None:intergenic 60.0%
GTGGTGGCCATGGGAATGTG+TGG + chr7_3:35262291-35262310 None:intergenic 60.0%
!! AAGGGAAGTGGTGGTGGTGG+TGG + chr7_3:35262307-35262326 None:intergenic 60.0%
GGTCAGAGATGAGGGTGAGG+AGG + chr7_3:35262389-35262408 None:intergenic 60.0%
! CGATCGACGCTAGCTTGGTG+GGG + chr7_3:35262440-35262459 None:intergenic 60.0%
! CTCGGCCATTGCATCGATCG+CGG + chr7_3:35262466-35262485 None:intergenic 60.0%
!! GGCACCGGTACAGTAACCAC+CGG - chr7_3:35262489-35262508 Msa1102410:three_prime_UTR 60.0%
CAACCGCCAAGTTGCCGACA+GGG + chr7_3:35262520-35262539 None:intergenic 60.0%
CGGCAACTTGGCGGTTGCTA+TGG - chr7_3:35262523-35262542 Msa1102410:exon 60.0%
!! CGAGCTCGGGTGAAGGCATT+CGG - chr7_3:35262893-35262912 Msa1102410:intron 60.0%
ACATTGGAATGCAGGGGCCG+AGG - chr7_3:35263871-35263890 Msa1102410:intron 60.0%
CCCTGTCCGAATGGTGGCAA+TGG + chr7_3:35264151-35264170 None:intergenic 60.0%
TGCCACCATTCGGACAGGGT+TGG - chr7_3:35264152-35264171 Msa1102410:intron 60.0%
TGGTAGGCCACAAGCATGGC+AGG - chr7_3:35264830-35264849 Msa1102410:intron 60.0%
GCTATGGGGGAGAGTGGCAA+AGG + chr7_3:35266736-35266755 None:intergenic 60.0%
!! GTGGTGGTGGTGGTGGCCAT+GGG + chr7_3:35262300-35262319 None:intergenic 65.0%
!! AGTGGTGGTGGTGGTGGCCA+TGG + chr7_3:35262301-35262320 None:intergenic 65.0%
GGGTCTTGAGGCCACGGTCT+TGG + chr7_3:35262410-35262429 None:intergenic 65.0%
GCAATGGCCGAGCTTGGCAC+CGG - chr7_3:35262474-35262493 Msa1102410:three_prime_UTR 65.0%
TGCCGACAGGGAATCACCGG+TGG + chr7_3:35262508-35262527 None:intergenic 65.0%
GCAACCGCCAAGTTGCCGAC+AGG + chr7_3:35262521-35262540 None:intergenic 65.0%
CTTCACCCGAGCTCGAACCC+AGG + chr7_3:35262888-35262907 None:intergenic 65.0%
CTGGGTTCGAGCTCGGGTGA+AGG - chr7_3:35262886-35262905 Msa1102410:intron 65.0%
AGGGGCCGAGGTTTGAACCC+TGG - chr7_3:35263883-35263902 Msa1102410:intron 65.0%
! GGTCGGGGAGGCACAACCAA+TGG + chr7_3:35266385-35266404 None:intergenic 65.0%
CGGAGCAAAAGTGGTCGGGG+AGG + chr7_3:35266397-35266416 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 35262198 35267380 35262198 ID=Msa1102410;Name=Msa1102410
chr7_3 mRNA 35262198 35267380 35262198 ID=Msa1102410-mRNA-1;Parent=Msa1102410;Name=Msa1102410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=102|1|1|1|1|1|3|334|199
chr7_3 exon 35262198 35262631 35262198 ID=Msa1102410-mRNA-1:exon:7432;Parent=Msa1102410-mRNA-1
chr7_3 exon 35265405 35265470 35265405 ID=Msa1102410-mRNA-1:exon:7431;Parent=Msa1102410-mRNA-1
chr7_3 exon 35266845 35267380 35266845 ID=Msa1102410-mRNA-1:exon:7430;Parent=Msa1102410-mRNA-1
chr7_3 five_prime_UTR 35267279 35267380 35267279 ID=Msa1102410-mRNA-1:five_prime_utr;Parent=Msa1102410-mRNA-1
chr7_3 CDS 35266845 35267278 35266845 ID=Msa1102410-mRNA-1:cds;Parent=Msa1102410-mRNA-1
chr7_3 CDS 35265405 35265470 35265405 ID=Msa1102410-mRNA-1:cds;Parent=Msa1102410-mRNA-1
chr7_3 CDS 35262532 35262631 35262532 ID=Msa1102410-mRNA-1:cds;Parent=Msa1102410-mRNA-1
chr7_3 three_prime_UTR 35262198 35262531 35262198 ID=Msa1102410-mRNA-1:three_prime_utr;Parent=Msa1102410-mRNA-1
Gene Sequence

>Msa1102410

ATGGCCACCACCACCACCACTTCCCTTTTCTTCCCCAACCCATTCACCTCTCAAACCACCAACAAAAGACTAACCGCCAAAAAGAACCTCCTCACCCTCATCTCTGACCAAGACCGTGGCCTCAAGACCCAAAACAACCCCACCAAGCTAGCGTCGATCGTTACCGCGATCGATGCAATGGCCGAGCTTGGCACCGGTACAGTAACCACCGGTGATTCCCTGTCGGCAACTTGGCGGTTGCTATGGACTACTGAGAAGGAGCAGCTGTTCATCATTGAGAAGGCTGGCTTGTTTGGAACTAAAGCTGGAGATGTTTTACAGGTCATTGACGTTAAGAATTTGATTCTTAACAATGTTATTACTTTTCCTCCTGATGGTGTTTTCTTTGTTCGGTCGAATATTGAAGTTGCTTCGGAGCAGAGAGTGAACTTCAAATTTACGAGTGCAGTGTTACGTGGAAAGAACTGGGAAATACCATTGCCACCATTCGGACAGGGTTGGTTTGATACTGTATACCTCGATGATGACCTTCGAGTTGCAAAGGATATCAGGGGAGACTATTTAGTTGTCGACCGAGCTTCCTATAACTGGAAAGAATGA

Protein sequence

>Msa1102410

MATTTTTSLFFPNPFTSQTTNKRLTAKKNLLTLISDQDRGLKTQNNPTKLASIVTAIDAMAELGTGTVTTGDSLSATWRLLWTTEKEQLFIIEKAGLFGTKAGDVLQVIDVKNLILNNVITFPPDGVFFVRSNIEVASEQRVNFKFTSAVLRGKNWEIPLPPFGQGWFDTVYLDDDLRVAKDIRGDYLVVDRASYNWKE*