AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0474630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474630 MtrunA17_Chr3g0131541 96.226 212 8 0 1 212 1 212 8.97e-156 429
Msa0474630 MtrunA17_Chr3g0131551 75.688 218 45 3 1 212 7 222 3.06e-120 340
Msa0474630 MtrunA17_Chr8g0385631 64.216 204 70 2 1 202 1 203 3.28e-93 271
Msa0474630 MtrunA17_Chr8g0385601 69.474 190 53 3 1 186 1 189 1.03e-92 270
Msa0474630 MtrunA17_Chr8g0385611 62.025 158 57 3 1 156 1 157 1.56e-63 194
Msa0474630 MtrunA17_Chr8g0385621 60.000 40 16 0 160 199 4 43 4.46e-11 56.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474630 AT3G23760.1 63.684 190 61 3 7 190 7 194 2.03e-86 254
Msa0474630 AT4G14100.1 64.516 186 56 3 14 191 7 190 4.68e-85 251

Find 87 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAAATTGATGTTAATATT+TGG 0.214223 3_3:-77556512 None:intergenic
CTTGATGGTGCTACCTATTT+AGG 0.222154 3_3:+77555773 Msa0474630:CDS
GTTTCCATTATTGTTGGGTT+AGG 0.253401 3_3:+77555214 Msa0474630:five_prime_UTR
CTCCGTCCTAATTGGCTTGA+TGG 0.262701 3_3:+77555758 Msa0474630:CDS
AAGCGGATCCCTACAGAAAT+TGG 0.272446 3_3:+77555571 Msa0474630:CDS
CAAAATTTGATTTATGAGTT+TGG 0.276437 3_3:-77556574 None:intergenic
ATAAGAATTTGATGAATGTT+AGG 0.281121 3_3:-77555376 None:intergenic
TCCGGCCAAGCTGCCGGAAC+TGG 0.316253 3_3:-77555518 None:intergenic
AACTTGTTCTTGACCTAAAT+AGG 0.332003 3_3:-77555786 None:intergenic
ATAATTTCCTATGTAATGTT+TGG 0.333466 3_3:+77555810 Msa0474630:CDS
CCCTACAGAAATTGGACTTA+TGG 0.343249 3_3:+77555579 Msa0474630:CDS
TGGGAAATAATGAACTGAAT+TGG 0.344867 3_3:+77556620 Msa0474630:three_prime_UTR
TGCAATAGAACACACCTTTA+CGG 0.348173 3_3:+77555448 Msa0474630:CDS
ACTGTTCGTGGCGATTCTTT+TGG 0.354532 3_3:+77556375 Msa0474630:CDS
TTGTAGGGATGGATGCAATA+TGG 0.358518 3_3:+77556544 Msa0474630:three_prime_UTR
TCTCCCTAACCCAACAATAA+TGG 0.359573 3_3:-77555218 None:intergenic
CAATATCATTGAGTTGATCT+TGG 0.360877 3_3:-77555637 None:intergenic
TTGTAGATTACGACCTTGAA+TGG 0.361181 3_3:+77555657 Msa0474630:CDS
TTGGTATTCTCCGTCCTAAT+TGG 0.369794 3_3:+77555750 Msa0474630:CDS
GTAGCACCATCAAGCCAATT+AGG 0.370390 3_3:-77555764 None:intergenic
TAATTTCCTATGTAATGTTT+GGG 0.374401 3_3:+77555811 Msa0474630:CDS
TTTCCATTATTGTTGGGTTA+GGG 0.386965 3_3:+77555215 Msa0474630:five_prime_UTR
CTCGACGGCGGAGCCAGTTC+CGG 0.389600 3_3:+77555505 Msa0474630:CDS
TAAGAATTTGATGAATGTTA+GGG 0.417757 3_3:-77555375 None:intergenic
GCCAGTTCCGGCAGCTTGGC+CGG 0.421754 3_3:+77555517 Msa0474630:CDS
AGTCAGAAACTGTACCCATT+TGG 0.422571 3_3:-77555264 None:intergenic
GGCTAAACTAAACAATCATT+CGG 0.422742 3_3:-77556491 None:intergenic
ATTATGTTTCCATTATTGTT+GGG 0.439396 3_3:+77555209 Msa0474630:five_prime_UTR
GTGTAGAAGATCCACTTAAC+AGG 0.441540 3_3:-77555881 None:intergenic
AACTGCTCCGGCCAAGCTGC+CGG 0.446630 3_3:-77555524 None:intergenic
TTAGAATCTGCTACTGTTCG+TGG 0.447496 3_3:+77556363 Msa0474630:CDS
ATGTTGAAGTTTCGACCGTT+GGG 0.451295 3_3:-77555611 None:intergenic
GTCTGATTGAAGCAGTATAC+AGG 0.464973 3_3:-77556330 None:intergenic
AATTATGTTTCCATTATTGT+TGG 0.466033 3_3:+77555208 Msa0474630:five_prime_UTR
GAGTAGTACCGTTACCGTAA+AGG 0.468001 3_3:-77555462 None:intergenic
TGCAGTGGCGGTCGGAGGGA+TGG 0.474901 3_3:-77555709 None:intergenic
CAATCATTCGGAAATACATT+GGG 0.476022 3_3:-77556479 None:intergenic
AGGTTCCATTGGTCCATTCA+AGG 0.477181 3_3:-77555670 None:intergenic
CCATCATCATCTTGTAGGGA+TGG 0.483050 3_3:+77556533 Msa0474630:three_prime_UTR
ACAATCATTCGGAAATACAT+TGG 0.484270 3_3:-77556480 None:intergenic
CTTTCTCCCAAACATTACAT+AGG 0.489592 3_3:-77555817 None:intergenic
GATGTTGAAGTTTCGACCGT+TGG 0.491687 3_3:-77555612 None:intergenic
GTTAAGTGGATCTTCTACAC+TGG 0.500811 3_3:+77555884 Msa0474630:CDS
CGGAGCCAGTTCCGGCAGCT+TGG 0.510708 3_3:+77555513 Msa0474630:CDS
AACCTTGCAGTGGCGGTCGG+AGG 0.511934 3_3:-77555714 None:intergenic
GCTGTTATGAGTAATCCAAA+TGG 0.512863 3_3:+77555249 Msa0474630:five_prime_UTR
ACCTTGCAGTGGCGGTCGGA+GGG 0.512978 3_3:-77555713 None:intergenic
TGTTGGAGATTTATCTAAGA+GGG 0.513539 3_3:-77555121 None:intergenic
CTGTTATGAGTAATCCAAAT+GGG 0.513860 3_3:+77555250 Msa0474630:five_prime_UTR
AAGAATTTGATGAATGTTAG+GGG 0.525802 3_3:-77555374 None:intergenic
ACCATAAGTCCAATTTCTGT+AGG 0.527172 3_3:-77555580 None:intergenic
TTGTTGGAGATTTATCTAAG+AGG 0.527917 3_3:-77555122 None:intergenic
AATTGGACTTATGGTACGAT+TGG 0.532149 3_3:+77555588 Msa0474630:CDS
TCACTCGAAGGCCTGTTAAG+TGG 0.539058 3_3:+77555870 Msa0474630:CDS
GACAACCTTGCAGTGGCGGT+CGG 0.543354 3_3:-77555717 None:intergenic
TGCTCATGTGATGACATTTG+AGG 0.548966 3_3:+77556272 Msa0474630:CDS
GCTTGAGGATGTGCATTGGC+AGG 0.549400 3_3:+77556305 Msa0474630:CDS
TCCCTCCGACCGCCACTGCA+AGG 0.553601 3_3:+77555712 Msa0474630:CDS
GTACATGAAGGAGGTTCCAT+TGG 0.555646 3_3:-77555681 None:intergenic
CCATCCCTACAAGATGATGA+TGG 0.555996 3_3:-77556533 None:intergenic
GCTTCTGTTCATGAATAGTA+CGG 0.566725 3_3:-77555552 None:intergenic
TTATGGTACGATTGGCCCAA+CGG 0.571739 3_3:+77555596 Msa0474630:CDS
CCATAAGTCCAATTTCTGTA+GGG 0.573008 3_3:-77555579 None:intergenic
CATGGACAACCTTGCAGTGG+CGG 0.573319 3_3:-77555721 None:intergenic
AGTACGGAATGAAACTGCTC+CGG 0.575238 3_3:-77555536 None:intergenic
AGAACACACCTTTACGGTAA+CGG 0.593520 3_3:+77555454 Msa0474630:CDS
CATGTGATGACATTTGAGGT+TGG 0.595333 3_3:+77556276 Msa0474630:CDS
AAGGTTGTCCATGTTGAAGT+TGG 0.595989 3_3:+77555731 Msa0474630:CDS
GTGGACAAATCTTGAGAGAG+TGG 0.601331 3_3:+77555328 Msa0474630:five_prime_UTR
ATGAAGATGTTCTCACTCGA+AGG 0.605789 3_3:+77555858 Msa0474630:CDS
CACCATCAAGCCAATTAGGA+CGG 0.609769 3_3:-77555760 None:intergenic
TGAGGTTGGAGCAGTGCTTG+AGG 0.612681 3_3:+77556290 Msa0474630:CDS
GTTGTTGAAAGCAGCAGCAA+TGG 0.616146 3_3:+77555421 Msa0474630:exon
AGAATTTGATGAATGTTAGG+GGG 0.619442 3_3:-77555373 None:intergenic
TACGACCTTGAATGGACCAA+TGG 0.624357 3_3:+77555665 Msa0474630:CDS
AAAGGTGTGTTCTATTGCAG+AGG 0.630711 3_3:-77555444 None:intergenic
GTACTATTCATGAACAGAAG+CGG 0.639978 3_3:+77555554 Msa0474630:CDS
GGGATGGAGAGTGTACATGA+AGG 0.647111 3_3:-77555693 None:intergenic
CAGTGCTTGAGGATGTGCAT+TGG 0.659088 3_3:+77556301 Msa0474630:CDS
ATGGAGAGTGTACATGAAGG+AGG 0.663920 3_3:-77555690 None:intergenic
GGAGAATACCAACTTCAACA+TGG 0.664515 3_3:-77555739 None:intergenic
TCTCTTCTCACTCTCGACGG+CGG 0.673727 3_3:+77555493 Msa0474630:CDS
CAACATGGACAACCTTGCAG+TGG 0.677545 3_3:-77555724 None:intergenic
CGTTCTCTTCTCACTCTCGA+CGG 0.680397 3_3:+77555490 Msa0474630:CDS
CTACACAGAAATGTGACACG+TGG 0.692435 3_3:+77555298 Msa0474630:five_prime_UTR
CGAGAGTGAGAAGAGAACGA+CGG 0.697861 3_3:-77555486 None:intergenic
TGTGACACGTGGTTTCACAG+TGG 0.741626 3_3:+77555309 Msa0474630:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAAATGAAGTTTTAGTTT+TGG - chr3_3:77555181-77555200 None:intergenic 15.0%
!!! TTAAAATGAAGTTTTAGTTT+TGG - chr3_3:77555181-77555200 None:intergenic 15.0%
!! AATTATGTTTCCATTATTGT+TGG + chr3_3:77555208-77555227 Msa0474630:five_prime_UTR 20.0%
!! ATTATGTTTCCATTATTGTT+GGG + chr3_3:77555209-77555228 Msa0474630:five_prime_UTR 20.0%
!! TAAGAATTTGATGAATGTTA+GGG - chr3_3:77555378-77555397 None:intergenic 20.0%
!! ATAAGAATTTGATGAATGTT+AGG - chr3_3:77555379-77555398 None:intergenic 20.0%
!! ATAATTTCCTATGTAATGTT+TGG + chr3_3:77555810-77555829 Msa0474630:CDS 20.0%
!! TAATTTCCTATGTAATGTTT+GGG + chr3_3:77555811-77555830 Msa0474630:CDS 20.0%
!! CTTATATGATAACAATTTGT+CGG + chr3_3:77556028-77556047 Msa0474630:intron 20.0%
!! TGATAAACTAATAAGTTCAA+GGG - chr3_3:77556135-77556154 None:intergenic 20.0%
!! ATGATAAACTAATAAGTTCA+AGG - chr3_3:77556136-77556155 None:intergenic 20.0%
!! GGAAAATTGATGTTAATATT+TGG - chr3_3:77556515-77556534 None:intergenic 20.0%
!!! CAAAATTTGATTTATGAGTT+TGG - chr3_3:77556577-77556596 None:intergenic 20.0%
!! AATTATGTTTCCATTATTGT+TGG + chr3_3:77555208-77555227 Msa0474630:five_prime_UTR 20.0%
!! ATTATGTTTCCATTATTGTT+GGG + chr3_3:77555209-77555228 Msa0474630:five_prime_UTR 20.0%
!! TAAGAATTTGATGAATGTTA+GGG - chr3_3:77555378-77555397 None:intergenic 20.0%
!! ATAAGAATTTGATGAATGTT+AGG - chr3_3:77555379-77555398 None:intergenic 20.0%
!! ATAATTTCCTATGTAATGTT+TGG + chr3_3:77555810-77555829 Msa0474630:CDS 20.0%
!! TAATTTCCTATGTAATGTTT+GGG + chr3_3:77555811-77555830 Msa0474630:CDS 20.0%
!! CTTATATGATAACAATTTGT+CGG + chr3_3:77556028-77556047 Msa0474630:intron 20.0%
!! TGATAAACTAATAAGTTCAA+GGG - chr3_3:77556135-77556154 None:intergenic 20.0%
!! ATGATAAACTAATAAGTTCA+AGG - chr3_3:77556136-77556155 None:intergenic 20.0%
!! GGAAAATTGATGTTAATATT+TGG - chr3_3:77556515-77556534 None:intergenic 20.0%
!!! CAAAATTTGATTTATGAGTT+TGG - chr3_3:77556577-77556596 None:intergenic 20.0%
!!! TCCAACAAATGTTTTTACTT+AGG + chr3_3:77555137-77555156 Msa0474630:five_prime_UTR 25.0%
!!! GAAGTTTTAGTTTTGGTTTA+AGG - chr3_3:77555174-77555193 None:intergenic 25.0%
! AAGAATTTGATGAATGTTAG+GGG - chr3_3:77555377-77555396 None:intergenic 25.0%
!!! TTTGGATTCATTGACTTATT+TGG + chr3_3:77555948-77555967 Msa0474630:intron 25.0%
! TGAATTAAGGTTTGATATAC+TGG + chr3_3:77556230-77556249 Msa0474630:intron 25.0%
!!! TCCAACAAATGTTTTTACTT+AGG + chr3_3:77555137-77555156 Msa0474630:five_prime_UTR 25.0%
!!! GAAGTTTTAGTTTTGGTTTA+AGG - chr3_3:77555174-77555193 None:intergenic 25.0%
! AAGAATTTGATGAATGTTAG+GGG - chr3_3:77555377-77555396 None:intergenic 25.0%
!!! TTTGGATTCATTGACTTATT+TGG + chr3_3:77555948-77555967 Msa0474630:intron 25.0%
! TGAATTAAGGTTTGATATAC+TGG + chr3_3:77556230-77556249 Msa0474630:intron 25.0%
TTGTTGGAGATTTATCTAAG+AGG - chr3_3:77555125-77555144 None:intergenic 30.0%
GCCTAAGTAAAAACATTTGT+TGG - chr3_3:77555141-77555160 None:intergenic 30.0%
TTTCCATTATTGTTGGGTTA+GGG + chr3_3:77555215-77555234 Msa0474630:five_prime_UTR 30.0%
CTGTTATGAGTAATCCAAAT+GGG + chr3_3:77555250-77555269 Msa0474630:five_prime_UTR 30.0%
!!! GGAAATTTCATTTTGGGTTT+GGG - chr3_3:77555355-77555374 None:intergenic 30.0%
! TTAGGGGGAAATTTCATTTT+GGG - chr3_3:77555361-77555380 None:intergenic 30.0%
AGAATTTGATGAATGTTAGG+GGG - chr3_3:77555376-77555395 None:intergenic 30.0%
!! CAATATCATTGAGTTGATCT+TGG - chr3_3:77555640-77555659 None:intergenic 30.0%
! AACTTGTTCTTGACCTAAAT+AGG - chr3_3:77555789-77555808 None:intergenic 30.0%
AATGAATCCAAACAGTAACT+AGG - chr3_3:77555940-77555959 None:intergenic 30.0%
CATTCCTGTGAAATGAATTA+AGG + chr3_3:77556217-77556236 Msa0474630:intron 30.0%
CAAACCTTAATTCATTTCAC+AGG - chr3_3:77556224-77556243 None:intergenic 30.0%
GATATACTGGTAATTAATGC+AGG + chr3_3:77556243-77556262 Msa0474630:intron 30.0%
CAATCATTCGGAAATACATT+GGG - chr3_3:77556482-77556501 None:intergenic 30.0%
ACAATCATTCGGAAATACAT+TGG - chr3_3:77556483-77556502 None:intergenic 30.0%
GGCTAAACTAAACAATCATT+CGG - chr3_3:77556494-77556513 None:intergenic 30.0%
! ATTTTCCATCATCATCTTGT+AGG + chr3_3:77556528-77556547 Msa0474630:three_prime_UTR 30.0%
! TTTTCCATCATCATCTTGTA+GGG + chr3_3:77556529-77556548 Msa0474630:three_prime_UTR 30.0%
!! CTCAGCTATCTTTTACTTTT+GGG + chr3_3:77556601-77556620 Msa0474630:three_prime_UTR 30.0%
TGGGAAATAATGAACTGAAT+TGG + chr3_3:77556620-77556639 Msa0474630:three_prime_UTR 30.0%
TTGTTGGAGATTTATCTAAG+AGG - chr3_3:77555125-77555144 None:intergenic 30.0%
GCCTAAGTAAAAACATTTGT+TGG - chr3_3:77555141-77555160 None:intergenic 30.0%
TTTCCATTATTGTTGGGTTA+GGG + chr3_3:77555215-77555234 Msa0474630:five_prime_UTR 30.0%
CTGTTATGAGTAATCCAAAT+GGG + chr3_3:77555250-77555269 Msa0474630:five_prime_UTR 30.0%
!!! GGAAATTTCATTTTGGGTTT+GGG - chr3_3:77555355-77555374 None:intergenic 30.0%
! TTAGGGGGAAATTTCATTTT+GGG - chr3_3:77555361-77555380 None:intergenic 30.0%
AGAATTTGATGAATGTTAGG+GGG - chr3_3:77555376-77555395 None:intergenic 30.0%
!! CAATATCATTGAGTTGATCT+TGG - chr3_3:77555640-77555659 None:intergenic 30.0%
! AACTTGTTCTTGACCTAAAT+AGG - chr3_3:77555789-77555808 None:intergenic 30.0%
AATGAATCCAAACAGTAACT+AGG - chr3_3:77555940-77555959 None:intergenic 30.0%
CATTCCTGTGAAATGAATTA+AGG + chr3_3:77556217-77556236 Msa0474630:intron 30.0%
CAAACCTTAATTCATTTCAC+AGG - chr3_3:77556224-77556243 None:intergenic 30.0%
GATATACTGGTAATTAATGC+AGG + chr3_3:77556243-77556262 Msa0474630:intron 30.0%
CAATCATTCGGAAATACATT+GGG - chr3_3:77556482-77556501 None:intergenic 30.0%
ACAATCATTCGGAAATACAT+TGG - chr3_3:77556483-77556502 None:intergenic 30.0%
GGCTAAACTAAACAATCATT+CGG - chr3_3:77556494-77556513 None:intergenic 30.0%
! ATTTTCCATCATCATCTTGT+AGG + chr3_3:77556528-77556547 Msa0474630:three_prime_UTR 30.0%
! TTTTCCATCATCATCTTGTA+GGG + chr3_3:77556529-77556548 Msa0474630:three_prime_UTR 30.0%
!! CTCAGCTATCTTTTACTTTT+GGG + chr3_3:77556601-77556620 Msa0474630:three_prime_UTR 30.0%
TGGGAAATAATGAACTGAAT+TGG + chr3_3:77556620-77556639 Msa0474630:three_prime_UTR 30.0%
GTTTCCATTATTGTTGGGTT+AGG + chr3_3:77555214-77555233 Msa0474630:five_prime_UTR 35.0%
GCTGTTATGAGTAATCCAAA+TGG + chr3_3:77555249-77555268 Msa0474630:five_prime_UTR 35.0%
!!! GGGAAATTTCATTTTGGGTT+TGG - chr3_3:77555356-77555375 None:intergenic 35.0%
! GTTAGGGGGAAATTTCATTT+TGG - chr3_3:77555362-77555381 None:intergenic 35.0%
TGCAATAGAACACACCTTTA+CGG + chr3_3:77555448-77555467 Msa0474630:CDS 35.0%
GCTTCTGTTCATGAATAGTA+CGG - chr3_3:77555555-77555574 None:intergenic 35.0%
GTACTATTCATGAACAGAAG+CGG + chr3_3:77555554-77555573 Msa0474630:CDS 35.0%
CCATAAGTCCAATTTCTGTA+GGG - chr3_3:77555582-77555601 None:intergenic 35.0%
ACCATAAGTCCAATTTCTGT+AGG - chr3_3:77555583-77555602 None:intergenic 35.0%
AATTGGACTTATGGTACGAT+TGG + chr3_3:77555588-77555607 Msa0474630:CDS 35.0%
TTGTAGATTACGACCTTGAA+TGG + chr3_3:77555657-77555676 Msa0474630:CDS 35.0%
CTTTCTCCCAAACATTACAT+AGG - chr3_3:77555820-77555839 None:intergenic 35.0%
TATCACTCCTAGTTACTGTT+TGG + chr3_3:77555930-77555949 Msa0474630:intron 35.0%
!! TCTTTTGGAAGTTTGATGAG+AGG + chr3_3:77556390-77556409 Msa0474630:CDS 35.0%
! GCTCAGCTATCTTTTACTTT+TGG + chr3_3:77556600-77556619 Msa0474630:three_prime_UTR 35.0%
GTTTCCATTATTGTTGGGTT+AGG + chr3_3:77555214-77555233 Msa0474630:five_prime_UTR 35.0%
GCTGTTATGAGTAATCCAAA+TGG + chr3_3:77555249-77555268 Msa0474630:five_prime_UTR 35.0%
!!! GGGAAATTTCATTTTGGGTT+TGG - chr3_3:77555356-77555375 None:intergenic 35.0%
! GTTAGGGGGAAATTTCATTT+TGG - chr3_3:77555362-77555381 None:intergenic 35.0%
TGCAATAGAACACACCTTTA+CGG + chr3_3:77555448-77555467 Msa0474630:CDS 35.0%
GCTTCTGTTCATGAATAGTA+CGG - chr3_3:77555555-77555574 None:intergenic 35.0%
GTACTATTCATGAACAGAAG+CGG + chr3_3:77555554-77555573 Msa0474630:CDS 35.0%
CCATAAGTCCAATTTCTGTA+GGG - chr3_3:77555582-77555601 None:intergenic 35.0%
ACCATAAGTCCAATTTCTGT+AGG - chr3_3:77555583-77555602 None:intergenic 35.0%
AATTGGACTTATGGTACGAT+TGG + chr3_3:77555588-77555607 Msa0474630:CDS 35.0%
TTGTAGATTACGACCTTGAA+TGG + chr3_3:77555657-77555676 Msa0474630:CDS 35.0%
CTTTCTCCCAAACATTACAT+AGG - chr3_3:77555820-77555839 None:intergenic 35.0%
TATCACTCCTAGTTACTGTT+TGG + chr3_3:77555930-77555949 Msa0474630:intron 35.0%
!! TCTTTTGGAAGTTTGATGAG+AGG + chr3_3:77556390-77556409 Msa0474630:CDS 35.0%
! GCTCAGCTATCTTTTACTTT+TGG + chr3_3:77556600-77556619 Msa0474630:three_prime_UTR 35.0%
TCTCCCTAACCCAACAATAA+TGG - chr3_3:77555221-77555240 None:intergenic 40.0%
AGTCAGAAACTGTACCCATT+TGG - chr3_3:77555267-77555286 None:intergenic 40.0%
! AAAGGTGTGTTCTATTGCAG+AGG - chr3_3:77555447-77555466 None:intergenic 40.0%
AGAACACACCTTTACGGTAA+CGG + chr3_3:77555454-77555473 Msa0474630:CDS 40.0%
CCCTACAGAAATTGGACTTA+TGG + chr3_3:77555579-77555598 Msa0474630:CDS 40.0%
ATGTTGAAGTTTCGACCGTT+GGG - chr3_3:77555614-77555633 None:intergenic 40.0%
AAGGTTGTCCATGTTGAAGT+TGG + chr3_3:77555731-77555750 Msa0474630:CDS 40.0%
GGAGAATACCAACTTCAACA+TGG - chr3_3:77555742-77555761 None:intergenic 40.0%
TTGGTATTCTCCGTCCTAAT+TGG + chr3_3:77555750-77555769 Msa0474630:CDS 40.0%
!! CTTGATGGTGCTACCTATTT+AGG + chr3_3:77555773-77555792 Msa0474630:CDS 40.0%
ATGAAGATGTTCTCACTCGA+AGG + chr3_3:77555858-77555877 Msa0474630:CDS 40.0%
GTGTAGAAGATCCACTTAAC+AGG - chr3_3:77555884-77555903 None:intergenic 40.0%
GTTAAGTGGATCTTCTACAC+TGG + chr3_3:77555884-77555903 Msa0474630:CDS 40.0%
TGCTCATGTGATGACATTTG+AGG + chr3_3:77556272-77556291 Msa0474630:CDS 40.0%
! CATGTGATGACATTTGAGGT+TGG + chr3_3:77556276-77556295 Msa0474630:CDS 40.0%
GTCTGATTGAAGCAGTATAC+AGG - chr3_3:77556333-77556352 None:intergenic 40.0%
TTAGAATCTGCTACTGTTCG+TGG + chr3_3:77556363-77556382 Msa0474630:CDS 40.0%
TTGTAGGGATGGATGCAATA+TGG + chr3_3:77556544-77556563 Msa0474630:three_prime_UTR 40.0%
TCTCCCTAACCCAACAATAA+TGG - chr3_3:77555221-77555240 None:intergenic 40.0%
AGTCAGAAACTGTACCCATT+TGG - chr3_3:77555267-77555286 None:intergenic 40.0%
! AAAGGTGTGTTCTATTGCAG+AGG - chr3_3:77555447-77555466 None:intergenic 40.0%
AGAACACACCTTTACGGTAA+CGG + chr3_3:77555454-77555473 Msa0474630:CDS 40.0%
CCCTACAGAAATTGGACTTA+TGG + chr3_3:77555579-77555598 Msa0474630:CDS 40.0%
ATGTTGAAGTTTCGACCGTT+GGG - chr3_3:77555614-77555633 None:intergenic 40.0%
AAGGTTGTCCATGTTGAAGT+TGG + chr3_3:77555731-77555750 Msa0474630:CDS 40.0%
GGAGAATACCAACTTCAACA+TGG - chr3_3:77555742-77555761 None:intergenic 40.0%
TTGGTATTCTCCGTCCTAAT+TGG + chr3_3:77555750-77555769 Msa0474630:CDS 40.0%
!! CTTGATGGTGCTACCTATTT+AGG + chr3_3:77555773-77555792 Msa0474630:CDS 40.0%
ATGAAGATGTTCTCACTCGA+AGG + chr3_3:77555858-77555877 Msa0474630:CDS 40.0%
GTGTAGAAGATCCACTTAAC+AGG - chr3_3:77555884-77555903 None:intergenic 40.0%
GTTAAGTGGATCTTCTACAC+TGG + chr3_3:77555884-77555903 Msa0474630:CDS 40.0%
TGCTCATGTGATGACATTTG+AGG + chr3_3:77556272-77556291 Msa0474630:CDS 40.0%
! CATGTGATGACATTTGAGGT+TGG + chr3_3:77556276-77556295 Msa0474630:CDS 40.0%
GTCTGATTGAAGCAGTATAC+AGG - chr3_3:77556333-77556352 None:intergenic 40.0%
TTAGAATCTGCTACTGTTCG+TGG + chr3_3:77556363-77556382 Msa0474630:CDS 40.0%
TTGTAGGGATGGATGCAATA+TGG + chr3_3:77556544-77556563 Msa0474630:three_prime_UTR 40.0%
CTACACAGAAATGTGACACG+TGG + chr3_3:77555298-77555317 Msa0474630:five_prime_UTR 45.0%
GTGGACAAATCTTGAGAGAG+TGG + chr3_3:77555328-77555347 Msa0474630:five_prime_UTR 45.0%
GTTGTTGAAAGCAGCAGCAA+TGG + chr3_3:77555421-77555440 Msa0474630:exon 45.0%
GAGTAGTACCGTTACCGTAA+AGG - chr3_3:77555465-77555484 None:intergenic 45.0%
AGTACGGAATGAAACTGCTC+CGG - chr3_3:77555539-77555558 None:intergenic 45.0%
AAGCGGATCCCTACAGAAAT+TGG + chr3_3:77555571-77555590 Msa0474630:CDS 45.0%
! TTATGGTACGATTGGCCCAA+CGG + chr3_3:77555596-77555615 Msa0474630:CDS 45.0%
GATGTTGAAGTTTCGACCGT+TGG - chr3_3:77555615-77555634 None:intergenic 45.0%
TACGACCTTGAATGGACCAA+TGG + chr3_3:77555665-77555684 Msa0474630:CDS 45.0%
AGGTTCCATTGGTCCATTCA+AGG - chr3_3:77555673-77555692 None:intergenic 45.0%
GTACATGAAGGAGGTTCCAT+TGG - chr3_3:77555684-77555703 None:intergenic 45.0%
! ATGGAGAGTGTACATGAAGG+AGG - chr3_3:77555693-77555712 None:intergenic 45.0%
CACCATCAAGCCAATTAGGA+CGG - chr3_3:77555763-77555782 None:intergenic 45.0%
GTAGCACCATCAAGCCAATT+AGG - chr3_3:77555767-77555786 None:intergenic 45.0%
! ACTGTTCGTGGCGATTCTTT+TGG + chr3_3:77556375-77556394 Msa0474630:CDS 45.0%
CCATCCCTACAAGATGATGA+TGG - chr3_3:77556536-77556555 None:intergenic 45.0%
CCATCATCATCTTGTAGGGA+TGG + chr3_3:77556533-77556552 Msa0474630:three_prime_UTR 45.0%
CTACACAGAAATGTGACACG+TGG + chr3_3:77555298-77555317 Msa0474630:five_prime_UTR 45.0%
GTGGACAAATCTTGAGAGAG+TGG + chr3_3:77555328-77555347 Msa0474630:five_prime_UTR 45.0%
GTTGTTGAAAGCAGCAGCAA+TGG + chr3_3:77555421-77555440 Msa0474630:exon 45.0%
GAGTAGTACCGTTACCGTAA+AGG - chr3_3:77555465-77555484 None:intergenic 45.0%
AGTACGGAATGAAACTGCTC+CGG - chr3_3:77555539-77555558 None:intergenic 45.0%
AAGCGGATCCCTACAGAAAT+TGG + chr3_3:77555571-77555590 Msa0474630:CDS 45.0%
! TTATGGTACGATTGGCCCAA+CGG + chr3_3:77555596-77555615 Msa0474630:CDS 45.0%
GATGTTGAAGTTTCGACCGT+TGG - chr3_3:77555615-77555634 None:intergenic 45.0%
TACGACCTTGAATGGACCAA+TGG + chr3_3:77555665-77555684 Msa0474630:CDS 45.0%
AGGTTCCATTGGTCCATTCA+AGG - chr3_3:77555673-77555692 None:intergenic 45.0%
GTACATGAAGGAGGTTCCAT+TGG - chr3_3:77555684-77555703 None:intergenic 45.0%
! ATGGAGAGTGTACATGAAGG+AGG - chr3_3:77555693-77555712 None:intergenic 45.0%
CACCATCAAGCCAATTAGGA+CGG - chr3_3:77555763-77555782 None:intergenic 45.0%
GTAGCACCATCAAGCCAATT+AGG - chr3_3:77555767-77555786 None:intergenic 45.0%
! ACTGTTCGTGGCGATTCTTT+TGG + chr3_3:77556375-77556394 Msa0474630:CDS 45.0%
CCATCCCTACAAGATGATGA+TGG - chr3_3:77556536-77556555 None:intergenic 45.0%
CCATCATCATCTTGTAGGGA+TGG + chr3_3:77556533-77556552 Msa0474630:three_prime_UTR 45.0%
TGTGACACGTGGTTTCACAG+TGG + chr3_3:77555309-77555328 Msa0474630:five_prime_UTR 50.0%
CGAGAGTGAGAAGAGAACGA+CGG - chr3_3:77555489-77555508 None:intergenic 50.0%
CGTTCTCTTCTCACTCTCGA+CGG + chr3_3:77555490-77555509 Msa0474630:CDS 50.0%
! GGGATGGAGAGTGTACATGA+AGG - chr3_3:77555696-77555715 None:intergenic 50.0%
CAACATGGACAACCTTGCAG+TGG - chr3_3:77555727-77555746 None:intergenic 50.0%
!! CTCCGTCCTAATTGGCTTGA+TGG + chr3_3:77555758-77555777 Msa0474630:CDS 50.0%
TCACTCGAAGGCCTGTTAAG+TGG + chr3_3:77555870-77555889 Msa0474630:CDS 50.0%
CAGTGCTTGAGGATGTGCAT+TGG + chr3_3:77556301-77556320 Msa0474630:CDS 50.0%
TGTGACACGTGGTTTCACAG+TGG + chr3_3:77555309-77555328 Msa0474630:five_prime_UTR 50.0%
CGAGAGTGAGAAGAGAACGA+CGG - chr3_3:77555489-77555508 None:intergenic 50.0%
CGTTCTCTTCTCACTCTCGA+CGG + chr3_3:77555490-77555509 Msa0474630:CDS 50.0%
! GGGATGGAGAGTGTACATGA+AGG - chr3_3:77555696-77555715 None:intergenic 50.0%
CAACATGGACAACCTTGCAG+TGG - chr3_3:77555727-77555746 None:intergenic 50.0%
!! CTCCGTCCTAATTGGCTTGA+TGG + chr3_3:77555758-77555777 Msa0474630:CDS 50.0%
TCACTCGAAGGCCTGTTAAG+TGG + chr3_3:77555870-77555889 Msa0474630:CDS 50.0%
CAGTGCTTGAGGATGTGCAT+TGG + chr3_3:77556301-77556320 Msa0474630:CDS 50.0%
TCTCTTCTCACTCTCGACGG+CGG + chr3_3:77555493-77555512 Msa0474630:CDS 55.0%
CATGGACAACCTTGCAGTGG+CGG - chr3_3:77555724-77555743 None:intergenic 55.0%
TGAGGTTGGAGCAGTGCTTG+AGG + chr3_3:77556290-77556309 Msa0474630:CDS 55.0%
! GCTTGAGGATGTGCATTGGC+AGG + chr3_3:77556305-77556324 Msa0474630:CDS 55.0%
TCTCTTCTCACTCTCGACGG+CGG + chr3_3:77555493-77555512 Msa0474630:CDS 55.0%
CATGGACAACCTTGCAGTGG+CGG - chr3_3:77555724-77555743 None:intergenic 55.0%
TGAGGTTGGAGCAGTGCTTG+AGG + chr3_3:77556290-77556309 Msa0474630:CDS 55.0%
! GCTTGAGGATGTGCATTGGC+AGG + chr3_3:77556305-77556324 Msa0474630:CDS 55.0%
GACAACCTTGCAGTGGCGGT+CGG - chr3_3:77555720-77555739 None:intergenic 60.0%
TGCTGCTGCTGCTGCTGCAT+AGG + chr3_3:77556422-77556441 Msa0474630:CDS 60.0%
GACAACCTTGCAGTGGCGGT+CGG - chr3_3:77555720-77555739 None:intergenic 60.0%
TGCTGCTGCTGCTGCTGCAT+AGG + chr3_3:77556422-77556441 Msa0474630:CDS 60.0%
AACTGCTCCGGCCAAGCTGC+CGG - chr3_3:77555527-77555546 None:intergenic 65.0%
ACCTTGCAGTGGCGGTCGGA+GGG - chr3_3:77555716-77555735 None:intergenic 65.0%
AACCTTGCAGTGGCGGTCGG+AGG - chr3_3:77555717-77555736 None:intergenic 65.0%
AACTGCTCCGGCCAAGCTGC+CGG - chr3_3:77555527-77555546 None:intergenic 65.0%
ACCTTGCAGTGGCGGTCGGA+GGG - chr3_3:77555716-77555735 None:intergenic 65.0%
AACCTTGCAGTGGCGGTCGG+AGG - chr3_3:77555717-77555736 None:intergenic 65.0%
CTCGACGGCGGAGCCAGTTC+CGG + chr3_3:77555505-77555524 Msa0474630:CDS 70.0%
CGGAGCCAGTTCCGGCAGCT+TGG + chr3_3:77555513-77555532 Msa0474630:CDS 70.0%
GCCAGTTCCGGCAGCTTGGC+CGG + chr3_3:77555517-77555536 Msa0474630:CDS 70.0%
TCCGGCCAAGCTGCCGGAAC+TGG - chr3_3:77555521-77555540 None:intergenic 70.0%
TGCAGTGGCGGTCGGAGGGA+TGG - chr3_3:77555712-77555731 None:intergenic 70.0%
TCCCTCCGACCGCCACTGCA+AGG + chr3_3:77555712-77555731 Msa0474630:CDS 70.0%
CTCGACGGCGGAGCCAGTTC+CGG + chr3_3:77555505-77555524 Msa0474630:CDS 70.0%
CGGAGCCAGTTCCGGCAGCT+TGG + chr3_3:77555513-77555532 Msa0474630:CDS 70.0%
GCCAGTTCCGGCAGCTTGGC+CGG + chr3_3:77555517-77555536 Msa0474630:CDS 70.0%
TCCGGCCAAGCTGCCGGAAC+TGG - chr3_3:77555521-77555540 None:intergenic 70.0%
TGCAGTGGCGGTCGGAGGGA+TGG - chr3_3:77555712-77555731 None:intergenic 70.0%
TCCCTCCGACCGCCACTGCA+AGG + chr3_3:77555712-77555731 Msa0474630:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 77555122 77556666 77555122 ID=Msa0474630;Name=Msa0474630
chr3_3 mRNA 77555122 77556666 77555122 ID=Msa0474630-mRNA-1;Parent=Msa0474630;Name=Msa0474630-mRNA-1;_AED=0.34;_eAED=0.34;_QI=318|1|1|1|1|1|2|223|214
chr3_3 exon 77555122 77555905 77555122 ID=Msa0474630-mRNA-1:exon:20754;Parent=Msa0474630-mRNA-1
chr3_3 exon 77556265 77556666 77556265 ID=Msa0474630-mRNA-1:exon:20755;Parent=Msa0474630-mRNA-1
chr3_3 five_prime_UTR 77555122 77555439 77555122 ID=Msa0474630-mRNA-1:five_prime_utr;Parent=Msa0474630-mRNA-1
chr3_3 CDS 77555440 77555905 77555440 ID=Msa0474630-mRNA-1:cds;Parent=Msa0474630-mRNA-1
chr3_3 CDS 77556265 77556443 77556265 ID=Msa0474630-mRNA-1:cds;Parent=Msa0474630-mRNA-1
chr3_3 three_prime_UTR 77556444 77556666 77556444 ID=Msa0474630-mRNA-1:three_prime_utr;Parent=Msa0474630-mRNA-1
Gene Sequence

>Msa0474630

ATGGCCTCTGCAATAGAACACACCTTTACGGTAACGGTACTACTCTCCGTCGTTCTCTTCTCACTCTCGACGGCGGAGCCAGTTCCGGCAGCTTGGCCGGAGCAGTTTCATTCCGTACTATTCATGAACAGAAGCGGATCCCTACAGAAATTGGACTTATGGTACGATTGGCCCAACGGTCGAAACTTCAACATCATCCAAGATCAACTCAATGATATTGTAGATTACGACCTTGAATGGACCAATGGAACCTCCTTCATGTACACTCTCCATCCCTCCGACCGCCACTGCAAGGTTGTCCATGTTGAAGTTGGTATTCTCCGTCCTAATTGGCTTGATGGTGCTACCTATTTAGGTCAAGAACAAGTTGATAATTTCCTATGTAATGTTTGGGAGAAAGTTGATTTCATTGTGTATTATGAAGATGTTCTCACTCGAAGGCCTGTTAAGTGGATCTTCTACACTGGATACACTGCTCATGTGATGACATTTGAGGTTGGAGCAGTGCTTGAGGATGTGCATTGGCAGGCTCCTGTATACTGCTTCAATCAGACTGAGAATATGTTAGAATCTGCTACTGTTCGTGGCGATTCTTTTGGAAGTTTGATGAGAGGCAAAGTCGATGCTGCTGCTGCTGCTGCATAG

Protein sequence

>Msa0474630

MASAIEHTFTVTVLLSVVLFSLSTAEPVPAAWPEQFHSVLFMNRSGSLQKLDLWYDWPNGRNFNIIQDQLNDIVDYDLEWTNGTSFMYTLHPSDRHCKVVHVEVGILRPNWLDGATYLGQEQVDNFLCNVWEKVDFIVYYEDVLTRRPVKWIFYTGYTAHVMTFEVGAVLEDVHWQAPVYCFNQTENMLESATVRGDSFGSLMRGKVDAAAAAA*