Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222850 | XP_013465392.1 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 784 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222850 | sp|P30171|ACT11_SOLTU | 97.347 | 377 | 10 | 0 | 1 | 377 | 1 | 377 | 0.0 | 771 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222850 | A0A072VCE0 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 784 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004180 | Msa0222850 | 0.806799 | 6.902225e-50 | -8.615850e-47 |
| Msa0028410 | Msa0222850 | 0.814444 | 1.535810e-51 | -8.615850e-47 |
| Msa0047660 | Msa0222850 | 0.806832 | 6.792017e-50 | -8.615850e-47 |
| Msa0075080 | Msa0222850 | 0.808362 | 3.215106e-50 | -8.615850e-47 |
| Msa0078170 | Msa0222850 | 0.800143 | 1.654894e-48 | -8.615850e-47 |
| Msa0117650 | Msa0222850 | -0.803737 | 3.022266e-49 | -8.615850e-47 |
| Msa0122930 | Msa0222850 | 0.812194 | 4.792960e-51 | -8.615850e-47 |
| Msa0124070 | Msa0222850 | 0.808643 | 2.800727e-50 | -8.615850e-47 |
| Msa0129820 | Msa0222850 | 0.806033 | 1.001089e-49 | -8.615850e-47 |
| Msa0147070 | Msa0222850 | 0.805875 | 1.080952e-49 | -8.615850e-47 |
| Msa0162170 | Msa0222850 | 0.809397 | 1.930572e-50 | -8.615850e-47 |
| Msa0164310 | Msa0222850 | 0.814114 | 1.816623e-51 | -8.615850e-47 |
| Msa0167570 | Msa0222850 | 0.800880 | 1.171135e-48 | -8.615850e-47 |
| Msa0168470 | Msa0222850 | 0.818288 | 2.119978e-52 | -8.615850e-47 |
| Msa0188670 | Msa0222850 | 0.804033 | 2.623195e-49 | -8.615850e-47 |
| Msa0213590 | Msa0222850 | 0.829868 | 4.045884e-55 | -8.615850e-47 |
| Msa0222850 | Msa0264290 | 0.981650 | 4.149485e-153 | -8.615850e-47 |
| Msa0222850 | Msa0279800 | 0.827878 | 1.226446e-54 | -8.615850e-47 |
| Msa0222850 | Msa0302280 | 0.951209 | 3.304221e-109 | -8.615850e-47 |
| Msa0222850 | Msa0307820 | 0.806213 | 9.173791e-50 | -8.615850e-47 |
| Msa0222850 | Msa0339450 | 0.981052 | 1.166500e-151 | -8.615850e-47 |
| Msa0222850 | Msa0355990 | 0.806076 | 9.804752e-50 | -8.615850e-47 |
| Msa0222850 | Msa0386230 | 0.804152 | 2.477337e-49 | -8.615850e-47 |
| Msa0222850 | Msa0433090 | -0.811299 | 7.504044e-51 | -8.615850e-47 |
| Msa0222850 | Msa0474630 | 0.800384 | 1.478360e-48 | -8.615850e-47 |
| Msa0222850 | Msa0484590 | 0.817743 | 2.815332e-52 | -8.615850e-47 |
| Msa0222850 | Msa0490740 | 0.826475 | 2.657652e-54 | -8.615850e-47 |
| Msa0222850 | Msa0506700 | 0.801262 | 9.784357e-49 | -8.615850e-47 |
| Msa0222850 | Msa0524710 | -0.823860 | 1.103123e-53 | -8.615850e-47 |
| Msa0222850 | Msa0597820 | -0.810232 | 1.276777e-50 | -8.615850e-47 |
| Msa0222850 | Msa0619450 | 0.816227 | 6.165558e-52 | -8.615850e-47 |
| Msa0222850 | Msa0619530 | 0.817843 | 2.672230e-52 | -8.615850e-47 |
| Msa0222850 | Msa0637590 | -0.803875 | 2.829502e-49 | -8.615850e-47 |
| Msa0222850 | Msa0659580 | 0.817450 | 3.276500e-52 | -8.615850e-47 |
| Msa0222850 | Msa0681190 | 0.802233 | 6.183063e-49 | -8.615850e-47 |
| Msa0222850 | Msa0699200 | 0.805305 | 1.423305e-49 | -8.615850e-47 |
| Msa0222850 | Msa0799150 | 0.804206 | 2.414491e-49 | -8.615850e-47 |
| Msa0222850 | Msa0985980 | 0.804976 | 1.667825e-49 | -8.615850e-47 |
| Msa0222850 | Msa1102410 | 0.803744 | 3.011584e-49 | -8.615850e-47 |
| Msa0222850 | Msa1190670 | 0.802531 | 5.366676e-49 | -8.615850e-47 |
| Msa0222850 | Msa1215540 | 0.804577 | 2.020995e-49 | -8.615850e-47 |
| Msa0222850 | Msa1297490 | 0.802098 | 6.591862e-49 | -8.615850e-47 |
| Msa0222850 | Msa1325260 | 0.813210 | 2.872936e-51 | -8.615850e-47 |
| Msa0222850 | Msa1390200 | -0.801761 | 7.730109e-49 | -8.615850e-47 |
| Msa0222850 | Msa1404810 | 0.801654 | 8.129911e-49 | -8.615850e-47 |
| Msa0222850 | Msa1437590 | -0.822810 | 1.941426e-53 | -8.615850e-47 |
| Msa0222850 | Msa1443280 | 0.800169 | 1.634870e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222850 | MtrunA17_Chr2g0328091 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 784 |
| Msa0222850 | MtrunA17_Chr1g0175391 | 98.674 | 377 | 5 | 0 | 1 | 377 | 1 | 377 | 0.0 | 776 |
| Msa0222850 | MtrunA17_Chr6g0448881 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 768 |
| Msa0222850 | MtrunA17_Chr7g0223901 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 768 |
| Msa0222850 | MtrunA17_Chr7g0258721 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 765 |
| Msa0222850 | MtrunA17_Chr3g0129641 | 94.960 | 377 | 19 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0222850 | MtrunA17_Chr2g0278591 | 93.634 | 377 | 24 | 0 | 1 | 377 | 1 | 377 | 0.0 | 752 |
| Msa0222850 | MtrunA17_Chr7g0224401 | 42.480 | 379 | 204 | 3 | 10 | 374 | 7 | 385 | 1.11e-118 | 349 |
| Msa0222850 | MtrunA17_Chr5g0427591 | 37.220 | 446 | 207 | 10 | 1 | 376 | 1 | 443 | 8.46e-94 | 287 |
| Msa0222850 | MtrunA17_Chr8g0361001 | 37.220 | 446 | 207 | 10 | 1 | 376 | 1 | 443 | 1.11e-93 | 287 |
| Msa0222850 | MtrunA17_Chr8g0381261 | 34.550 | 411 | 219 | 8 | 10 | 372 | 10 | 418 | 4.30e-72 | 231 |
| Msa0222850 | MtrunA17_Chr3g0089031 | 37.105 | 380 | 213 | 9 | 7 | 377 | 1 | 363 | 8.35e-68 | 218 |
| Msa0222850 | MtrunA17_Chr2g0305361 | 27.650 | 434 | 248 | 7 | 8 | 377 | 6 | 437 | 2.57e-56 | 190 |
| Msa0222850 | MtrunA17_Chr3g0080021 | 30.303 | 297 | 183 | 9 | 91 | 371 | 179 | 467 | 1.66e-40 | 149 |
| Msa0222850 | MtrunA17_Chr8g0369101 | 31.058 | 293 | 175 | 10 | 91 | 366 | 187 | 469 | 6.18e-36 | 136 |
| Msa0222850 | MtrunA17_Chr3g0111971 | 28.968 | 252 | 160 | 7 | 9 | 245 | 21 | 268 | 7.47e-22 | 97.4 |
| Msa0222850 | MtrunA17_Chr3g0111971 | 33.607 | 122 | 78 | 2 | 250 | 368 | 586 | 707 | 3.60e-16 | 80.1 |
| Msa0222850 | MtrunA17_Chr8g0336071 | 40.000 | 95 | 57 | 0 | 105 | 199 | 1 | 95 | 3.19e-19 | 82.0 |
| Msa0222850 | MtrunA17_Chr8g0336061 | 43.478 | 92 | 39 | 2 | 241 | 319 | 12 | 103 | 4.07e-19 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0222850 | AT3G12110.1 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 765 |
| Msa0222850 | AT3G53750.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0222850 | AT3G53750.2 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0222850 | AT2G37620.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0222850 | AT2G37620.3 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0222850 | AT2G37620.2 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0222850 | AT2G37620.4 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0222850 | AT5G59370.2 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0222850 | AT5G59370.1 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0222850 | AT3G46520.2 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0222850 | AT3G46520.1 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0222850 | AT5G09810.1 | 94.960 | 377 | 19 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa0222850 | AT1G49240.1 | 92.573 | 377 | 28 | 0 | 1 | 377 | 1 | 377 | 0.0 | 745 |
| Msa0222850 | AT3G18780.2 | 92.308 | 377 | 29 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| Msa0222850 | AT3G18780.3 | 92.308 | 377 | 29 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| Msa0222850 | AT3G18780.1 | 92.201 | 359 | 28 | 0 | 1 | 359 | 1 | 359 | 0.0 | 703 |
| Msa0222850 | AT2G42100.1 | 83.967 | 368 | 59 | 0 | 10 | 377 | 11 | 378 | 0.0 | 673 |
| Msa0222850 | AT2G42090.1 | 70.000 | 370 | 106 | 1 | 7 | 376 | 1 | 365 | 0.0 | 564 |
| Msa0222850 | AT2G42170.1 | 77.108 | 332 | 73 | 1 | 46 | 377 | 1 | 329 | 0.0 | 556 |
| Msa0222850 | AT2G42170.3 | 77.108 | 332 | 73 | 1 | 46 | 377 | 1 | 329 | 0.0 | 556 |
| Msa0222850 | AT2G42170.4 | 76.923 | 312 | 69 | 1 | 46 | 357 | 1 | 309 | 0.0 | 518 |
| Msa0222850 | AT2G42170.2 | 76.923 | 312 | 69 | 1 | 46 | 357 | 1 | 309 | 0.0 | 518 |
| Msa0222850 | AT2G42170.5 | 76.991 | 226 | 49 | 1 | 152 | 377 | 9 | 231 | 2.26e-130 | 373 |
| Msa0222850 | AT3G27000.1 | 43.536 | 379 | 200 | 4 | 10 | 374 | 7 | 385 | 5.07e-121 | 355 |
| Msa0222850 | AT1G18450.1 | 37.472 | 443 | 207 | 9 | 1 | 376 | 1 | 440 | 1.55e-95 | 292 |
| Msa0222850 | AT1G13180.1 | 34.223 | 412 | 219 | 9 | 10 | 372 | 9 | 417 | 2.85e-72 | 232 |
| Msa0222850 | AT3G60830.1 | 37.467 | 379 | 213 | 9 | 7 | 377 | 1 | 363 | 6.00e-67 | 216 |
| Msa0222850 | AT3G33520.1 | 30.166 | 421 | 236 | 7 | 10 | 377 | 5 | 420 | 5.60e-58 | 194 |
| Msa0222850 | AT5G56180.3 | 31.338 | 284 | 170 | 9 | 91 | 358 | 50 | 324 | 1.99e-35 | 132 |
| Msa0222850 | AT5G56180.1 | 31.338 | 284 | 170 | 9 | 91 | 358 | 182 | 456 | 1.21e-34 | 133 |
| Msa0222850 | AT3G12380.2 | 29.183 | 257 | 159 | 6 | 9 | 245 | 21 | 274 | 1.23e-24 | 106 |
| Msa0222850 | AT3G12380.2 | 32.738 | 168 | 106 | 4 | 207 | 368 | 550 | 716 | 3.91e-17 | 83.6 |
| Msa0222850 | AT3G12380.1 | 29.020 | 255 | 156 | 6 | 9 | 245 | 21 | 268 | 4.92e-24 | 104 |
| Msa0222850 | AT3G12380.1 | 32.738 | 168 | 106 | 4 | 207 | 368 | 544 | 710 | 3.79e-17 | 83.6 |
| Msa0222850 | AT1G73910.1 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.11e-23 | 95.1 |
| Msa0222850 | AT1G73910.2 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.11e-23 | 95.1 |
| Msa0222850 | AT5G56180.2 | 32.178 | 202 | 114 | 8 | 91 | 281 | 182 | 371 | 2.11e-19 | 89.4 |
| Msa0222850 | AT1G73910.3 | 29.268 | 123 | 71 | 2 | 1 | 107 | 1 | 123 | 3.02e-12 | 64.7 |
Find 109 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGATCTTCATGCTGCTT+GGG | 0.250595 | 2_1:-72297616 | None:intergenic |
| AGCAAAACCGGGTGCTCCTC+TGG | 0.272892 | 2_1:-72296668 | None:intergenic |
| CAACCACTGGTCTGTGATAA+TGG | 0.278942 | 2_1:+72296058 | Msa0222850:CDS |
| AACATTTAGGCTGGATTTGC+TGG | 0.289528 | 2_1:+72296422 | Msa0222850:intron |
| TGCTATGTATGTTGCTATTC+AGG | 0.305017 | 2_1:+72296766 | Msa0222850:CDS |
| GGGATGACATGGAGAAAATT+TGG | 0.308086 | 2_1:+72296612 | Msa0222850:CDS |
| AGGGCATATCCTTCATAAAT+AGG | 0.317673 | 2_1:-72297143 | None:intergenic |
| CACACGGAGTTCATTGTAAA+AGG | 0.330285 | 2_1:-72296642 | None:intergenic |
| ACCTTGATCTTCATGCTGCT+TGG | 0.336588 | 2_1:-72297617 | None:intergenic |
| AGCATGGTATTGTGAGTAAC+TGG | 0.340011 | 2_1:+72296591 | Msa0222850:CDS |
| TCAACGGTTGCAGCTGAGAT+AGG | 0.377020 | 2_1:+72295536 | Msa0222850:five_prime_UTR |
| GGTGCTTCAGTGAGCAAAAC+CGG | 0.396077 | 2_1:-72296680 | None:intergenic |
| CTCACAATACCATGCTCAAT+TGG | 0.397001 | 2_1:-72296584 | None:intergenic |
| CAAGCTCTTGCTCAAAATCA+AGG | 0.399460 | 2_1:-72297313 | None:intergenic |
| CTCATTCTGTCAGCAATGCC+AGG | 0.400398 | 2_1:-72297572 | None:intergenic |
| ATCCTTCGTCTTGATTTAGC+AGG | 0.412905 | 2_1:+72297176 | Msa0222850:CDS |
| GATGGCCAGATCATCACTAT+TGG | 0.420978 | 2_1:+72297383 | Msa0222850:CDS |
| AAGAACGACATTAACGTTGT+TGG | 0.421667 | 2_1:-72295393 | None:intergenic |
| CCGAGAGAAAATACAGTGTC+TGG | 0.425088 | 2_1:+72297651 | Msa0222850:CDS |
| GCAAAACCGGGTGCTCCTCT+GGG | 0.429592 | 2_1:-72296667 | None:intergenic |
| TACAATTTCACGCTCGGCTG+TGG | 0.436320 | 2_1:-72297258 | None:intergenic |
| TATGGAAATATTGTCCTTAG+TGG | 0.444109 | 2_1:+72297533 | Msa0222850:CDS |
| CACTGGTGTGATGGTTGGCA+TGG | 0.449957 | 2_1:+72296496 | Msa0222850:CDS |
| GATATCAGAAAGGACTTGTA+TGG | 0.450042 | 2_1:+72297515 | Msa0222850:CDS |
| TAGAATGCTGCAGAATGGTT+TGG | 0.453399 | 2_1:+72297903 | Msa0222850:exon |
| AGTGCTAAGAGAAGCTAAGA+TGG | 0.454030 | 2_1:-72297684 | None:intergenic |
| CTTGATCTTCATGCTGCTTG+GGG | 0.455780 | 2_1:-72297615 | None:intergenic |
| TATGCTAGTGGTCGAACAAC+CGG | 0.457727 | 2_1:+72296803 | Msa0222850:CDS |
| CAGCTCCAATAGTGATGATC+TGG | 0.458059 | 2_1:-72297388 | None:intergenic |
| ATCTCTTACAATTTCACGCT+CGG | 0.471407 | 2_1:-72297264 | None:intergenic |
| GCTGTGTTTCCTAGCATTGT+TGG | 0.477335 | 2_1:+72296461 | Msa0222850:CDS |
| TAATGGAACAGGAATGGTTA+AGG | 0.478719 | 2_1:+72296075 | Msa0222850:CDS |
| CTGGTCTGTGATAATGGAAC+AGG | 0.481376 | 2_1:+72296064 | Msa0222850:CDS |
| AAATACAGTGTCTGGATTGG+TGG | 0.485676 | 2_1:+72297659 | Msa0222850:CDS |
| CCAGCCTTCCATGGTTGGAA+TGG | 0.489084 | 2_1:+72297439 | Msa0222850:CDS |
| ATAGTGATGATCTGGCCATC+AGG | 0.494142 | 2_1:-72297380 | None:intergenic |
| AAGGCCGAGTACGATGAATC+TGG | 0.498285 | 2_1:+72297852 | Msa0222850:CDS |
| AAGAATAACCACGCTCGGTA+AGG | 0.505013 | 2_1:-72297229 | None:intergenic |
| ATGAAAATCCTTACCGAGCG+TGG | 0.509930 | 2_1:+72297221 | Msa0222850:CDS |
| AGAAAATACAGTGTCTGGAT+TGG | 0.510090 | 2_1:+72297656 | Msa0222850:CDS |
| CCATTCCAACCATGGAAGGC+TGG | 0.515654 | 2_1:-72297439 | None:intergenic |
| TAGAGTCAATATACCACGCT+TGG | 0.516667 | 2_1:-72296555 | None:intergenic |
| CACACTGTGCCTATTTATGA+AGG | 0.522782 | 2_1:+72297134 | Msa0222850:CDS |
| ATGCTAGGAAACACAGCCCT+TGG | 0.526579 | 2_1:-72296455 | None:intergenic |
| TGCTGGAGATGATGCTCCAA+GGG | 0.531721 | 2_1:+72296439 | Msa0222850:CDS |
| GGTGGTACTACTATGTTCCC+TGG | 0.534257 | 2_1:+72297554 | Msa0222850:CDS |
| GCAGGTATTGTACTGGACTC+TGG | 0.536986 | 2_1:+72297098 | Msa0222850:intron |
| CGATTAGCCTTTGGATTGAG+CGG | 0.541575 | 2_1:-72296701 | None:intergenic |
| GACCAGTGGTTGAATATCCT+CGG | 0.542292 | 2_1:-72296047 | None:intergenic |
| CGCCGAGGATATTCAACCAC+TGG | 0.542623 | 2_1:+72296045 | Msa0222850:CDS |
| AGTATTTATGTAATGTTAGA+CGG | 0.543570 | 2_1:+72297997 | Msa0222850:three_prime_UTR |
| CCCAAGCAGCATGAAGATCA+AGG | 0.543751 | 2_1:+72297616 | Msa0222850:CDS |
| AATATGTGCAGGTATTGTAC+TGG | 0.544002 | 2_1:+72297091 | Msa0222850:intron |
| TCGTTCTTAGAACTTAGAAT+CGG | 0.545558 | 2_1:+72295408 | Msa0222850:five_prime_UTR |
| TCCTTCGTCTTGATTTAGCA+GGG | 0.546953 | 2_1:+72297177 | Msa0222850:CDS |
| GAAGGCTGGAAAAGAACCTC+AGG | 0.547727 | 2_1:-72297425 | None:intergenic |
| TGAAATTGTAAGAGATGTGA+AGG | 0.550481 | 2_1:+72297271 | Msa0222850:CDS |
| CGTGGTCGACCAACAATGCT+AGG | 0.552232 | 2_1:-72296470 | None:intergenic |
| ACATAGTAGTACCACCACTA+AGG | 0.559599 | 2_1:-72297547 | None:intergenic |
| TTGCTGGAGATGATGCTCCA+AGG | 0.560432 | 2_1:+72296438 | Msa0222850:CDS |
| GACGAAGGATAGCATGTGGA+AGG | 0.560879 | 2_1:-72297163 | None:intergenic |
| AAGCTCTTGCTCAAAATCAA+GGG | 0.566750 | 2_1:-72297312 | None:intergenic |
| ACCACGCCACACTGGTGTGA+TGG | 0.574183 | 2_1:+72296487 | Msa0222850:CDS |
| CTAAAATATCCAATTGAGCA+TGG | 0.574515 | 2_1:+72296575 | Msa0222850:CDS |
| TGTGGCCCCAGAGGAGCACC+CGG | 0.576326 | 2_1:+72296661 | Msa0222850:CDS |
| TGAATAGCAACATACATAGC+AGG | 0.576757 | 2_1:-72296764 | None:intergenic |
| CGCCACACTGGTGTGATGGT+TGG | 0.577341 | 2_1:+72296491 | Msa0222850:CDS |
| GTGCTTCAGTGAGCAAAACC+GGG | 0.578129 | 2_1:-72296679 | None:intergenic |
| GCTTCCATTCCAACCATGGA+AGG | 0.580286 | 2_1:-72297443 | None:intergenic |
| GGTGCTCCTCTGGGGCCACA+CGG | 0.580962 | 2_1:-72296658 | None:intergenic |
| AACAGCTTCCATTCCAACCA+TGG | 0.591828 | 2_1:-72297447 | None:intergenic |
| GAGCAAGGAAATTACCGCGT+TGG | 0.592403 | 2_1:+72297592 | Msa0222850:CDS |
| GGAAATATTGTCCTTAGTGG+TGG | 0.594437 | 2_1:+72297536 | Msa0222850:CDS |
| AGTGAAAGAATAACCACGCT+CGG | 0.601145 | 2_1:-72297234 | None:intergenic |
| AGGACCAGATTCATCGTACT+CGG | 0.601521 | 2_1:-72297856 | None:intergenic |
| TGTGAGTAACTGGGATGACA+TGG | 0.601686 | 2_1:+72296601 | Msa0222850:CDS |
| TGAGCGTTTCCGTTGTCCTG+AGG | 0.602279 | 2_1:+72297409 | Msa0222850:CDS |
| ATTGTACTGGACTCTGGAGA+TGG | 0.605459 | 2_1:+72297104 | Msa0222850:CDS |
| TCAATAGCGACTTGCAACGA+TGG | 0.608358 | 2_1:+72297954 | Msa0222850:three_prime_UTR |
| GTTGGTCGACCACGCCACAC+TGG | 0.610992 | 2_1:+72296479 | Msa0222850:CDS |
| ATGGTTGGAATGGAAGCTGT+TGG | 0.612805 | 2_1:+72297449 | Msa0222850:CDS |
| TGAAGCACCGCTCAATCCAA+AGG | 0.625231 | 2_1:+72296694 | Msa0222850:CDS |
| CATGCTGCTTGGGGCCAACG+CGG | 0.625414 | 2_1:-72297606 | None:intergenic |
| CATTGCTGACAGAATGAGCA+AGG | 0.625589 | 2_1:+72297577 | Msa0222850:CDS |
| ACCATCACACCAGTGTGGCG+TGG | 0.628231 | 2_1:-72296488 | None:intergenic |
| CTGTGATAATGGAACAGGAA+TGG | 0.632340 | 2_1:+72296069 | Msa0222850:CDS |
| TTGAAAGATAGTCGTGAACG+TGG | 0.634011 | 2_1:+72295437 | Msa0222850:five_prime_UTR |
| ACTAGCATAGAGCGATAGAA+CGG | 0.636987 | 2_1:-72296789 | None:intergenic |
| CAAAACCGGGTGCTCCTCTG+GGG | 0.638105 | 2_1:-72296666 | None:intergenic |
| GTTCTATCGCTCTATGCTAG+TGG | 0.639915 | 2_1:+72296791 | Msa0222850:CDS |
| TCAAGACGAAGGATAGCATG+TGG | 0.640472 | 2_1:-72297167 | None:intergenic |
| AAGAGTTATGAACTTCCTGA+TGG | 0.641331 | 2_1:+72297365 | Msa0222850:CDS |
| TCATTCTGTCAGCAATGCCA+GGG | 0.641800 | 2_1:-72297571 | None:intergenic |
| ACTGGTGTGATGGTTGGCAT+GGG | 0.642331 | 2_1:+72296497 | Msa0222850:CDS |
| TGAACTCCGTGTGGCCCCAG+AGG | 0.648993 | 2_1:+72296652 | Msa0222850:CDS |
| GCTGCAGAATGGTTTGGTGT+AGG | 0.651370 | 2_1:+72297909 | Msa0222850:three_prime_UTR |
| AAAGACAATGGCAGACGCCG+AGG | 0.653794 | 2_1:+72296030 | Msa0222850:exon |
| GGAAAAGAACCTCAGGACAA+CGG | 0.659232 | 2_1:-72297418 | None:intergenic |
| ACGAAGGATAGCATGTGGAA+GGG | 0.659324 | 2_1:-72297162 | None:intergenic |
| GATGAAGCTCAGTCCAAGCG+TGG | 0.663966 | 2_1:+72296542 | Msa0222850:CDS |
| AATGCAGATGTGGATTGCAA+AGG | 0.664746 | 2_1:+72297833 | Msa0222850:intron |
| GTGTGATGTTGATATCAGAA+AGG | 0.677167 | 2_1:+72297505 | Msa0222850:CDS |
| TTAGACGGTGAAGTCAGCGA+AGG | 0.681518 | 2_1:+72298012 | Msa0222850:three_prime_UTR |
| GTTCCATTATCACAGACCAG+TGG | 0.693343 | 2_1:-72296061 | None:intergenic |
| TGCCAACCATCACACCAGTG+TGG | 0.706399 | 2_1:-72296493 | None:intergenic |
| GCATGGTATTGTGAGTAACT+GGG | 0.709006 | 2_1:+72296592 | Msa0222850:CDS |
| GCCCTGCTAAATCAAGACGA+AGG | 0.714666 | 2_1:-72297178 | None:intergenic |
| CTTCATAAATAGGCACAGTG+TGG | 0.723850 | 2_1:-72297133 | None:intergenic |
| AAGCAGCATGAAGATCAAGG+TGG | 0.767710 | 2_1:+72297619 | Msa0222850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTCTTTAAATTGTTT+TGG | + | chr2_1:72295945-72295964 | Msa0222850:intron | 15.0% |
| !! | TTTGTTGATATTCATGTATA+TGG | + | chr2_1:72295622-72295641 | Msa0222850:intron | 20.0% |
| !!! | CATTCTAAGTTTTTTTATAC+TGG | + | chr2_1:72296877-72296896 | Msa0222850:intron | 20.0% |
| !! | AAAGAATTGTTCTATATCTA+TGG | + | chr2_1:72297030-72297049 | Msa0222850:intron | 20.0% |
| !! | ATGTCAAAAAAAGAATTCTA+AGG | - | chr2_1:72297764-72297783 | None:intergenic | 20.0% |
| !!! | TTTGACATGTTTGATTTATT+TGG | + | chr2_1:72297776-72297795 | Msa0222850:intron | 20.0% |
| !!! | TTGACATGTTTGATTTATTT+GGG | + | chr2_1:72297777-72297796 | Msa0222850:intron | 20.0% |
| !! | AGTATTTATGTAATGTTAGA+CGG | + | chr2_1:72297997-72298016 | Msa0222850:three_prime_UTR | 20.0% |
| !!! | TCATTTTTTGTTGCTTTCAA+CGG | + | chr2_1:72295520-72295539 | Msa0222850:five_prime_UTR | 25.0% |
| !!! | ACGAGTTTTATTTGATATGT+TGG | + | chr2_1:72295717-72295736 | Msa0222850:intron | 25.0% |
| ! | TTATACACGCTATATACATA+CGG | - | chr2_1:72295776-72295795 | None:intergenic | 25.0% |
| ! | AAGTGTAAGAATAATTAGTG+AGG | + | chr2_1:72295880-72295899 | Msa0222850:intron | 25.0% |
| !! | TATCTTTTCTGTTTTCTCTT+CGG | + | chr2_1:72296156-72296175 | Msa0222850:intron | 25.0% |
| ! | AGTGTATCACAAAACAATAT+TGG | - | chr2_1:72296227-72296246 | None:intergenic | 25.0% |
| !! | ACACATTAGTTTCTTAAATC+GGG | - | chr2_1:72296839-72296858 | None:intergenic | 25.0% |
| !! | GACACATTAGTTTCTTAAAT+CGG | - | chr2_1:72296840-72296859 | None:intergenic | 25.0% |
| !!! | TCAGTTTGTTAATGGATATA+TGG | + | chr2_1:72296929-72296948 | Msa0222850:intron | 25.0% |
| !!! | TATTTTTGAAAATGCAGATG+TGG | + | chr2_1:72297823-72297842 | Msa0222850:intron | 25.0% |
| TCGTTCTTAGAACTTAGAAT+CGG | + | chr2_1:72295408-72295427 | Msa0222850:five_prime_UTR | 30.0% | |
| ACGGATAAATGAAAACTTGT+GGG | - | chr2_1:72295757-72295776 | None:intergenic | 30.0% | |
| TACGGATAAATGAAAACTTG+TGG | - | chr2_1:72295758-72295777 | None:intergenic | 30.0% | |
| TTAGATCACCATAACATGTT+TGG | - | chr2_1:72295852-72295871 | None:intergenic | 30.0% | |
| !!! | AATTGTTTTGGAATAGCACT+TGG | + | chr2_1:72295957-72295976 | Msa0222850:intron | 30.0% |
| ATGTACTAAGAAGGAGTTTA+TGG | + | chr2_1:72295992-72296011 | Msa0222850:intron | 30.0% | |
| AGTACTAAATGTTGTTGCTA+AGG | + | chr2_1:72296251-72296270 | Msa0222850:intron | 30.0% | |
| TCACAGCAAATTAGTAGAAA+GGG | - | chr2_1:72296381-72296400 | None:intergenic | 30.0% | |
| TTCACAGCAAATTAGTAGAA+AGG | - | chr2_1:72296382-72296401 | None:intergenic | 30.0% | |
| ! | CATTGTGATTTGCAACATTT+AGG | + | chr2_1:72296409-72296428 | Msa0222850:intron | 30.0% |
| CTAAAATATCCAATTGAGCA+TGG | + | chr2_1:72296575-72296594 | Msa0222850:CDS | 30.0% | |
| AAAAATAAGAATGCGTTGCA+AGG | + | chr2_1:72296905-72296924 | Msa0222850:intron | 30.0% | |
| ATGAAGTCTAGTTAAGTTCA+TGG | + | chr2_1:72296973-72296992 | Msa0222850:intron | 30.0% | |
| TGAAGTCTAGTTAAGTTCAT+GGG | + | chr2_1:72296974-72296993 | Msa0222850:intron | 30.0% | |
| TAGTTAAGTTCATGGGAAAA+AGG | + | chr2_1:72296981-72297000 | Msa0222850:intron | 30.0% | |
| AGTTAAGTTCATGGGAAAAA+GGG | + | chr2_1:72296982-72297001 | Msa0222850:intron | 30.0% | |
| AAGGGGAAAATAGACAAAAA+TGG | + | chr2_1:72297000-72297019 | Msa0222850:intron | 30.0% | |
| AACTCTATATGAATATGTGC+AGG | + | chr2_1:72297080-72297099 | Msa0222850:intron | 30.0% | |
| TGAAATTGTAAGAGATGTGA+AGG | + | chr2_1:72297271-72297290 | Msa0222850:CDS | 30.0% | |
| TATGGAAATATTGTCCTTAG+TGG | + | chr2_1:72297533-72297552 | Msa0222850:CDS | 30.0% | |
| ! | CATTTTCTGTGTACAATTGA+AGG | - | chr2_1:72297879-72297898 | None:intergenic | 30.0% |
| AAGAACGACATTAACGTTGT+TGG | - | chr2_1:72295396-72295415 | None:intergenic | 35.0% | |
| ACGTACGTAAAAACCTGAAA+TGG | - | chr2_1:72295587-72295606 | None:intergenic | 35.0% | |
| GTATTGTGCCAAACATGTTA+TGG | + | chr2_1:72295841-72295860 | Msa0222850:intron | 35.0% | |
| CGTCTTTCAATGTACTAAGA+AGG | + | chr2_1:72295983-72296002 | Msa0222850:intron | 35.0% | |
| !! | GTGCAGATTTTGAAAGACAA+TGG | + | chr2_1:72296018-72296037 | Msa0222850:intron | 35.0% |
| TAATGGAACAGGAATGGTTA+AGG | + | chr2_1:72296075-72296094 | Msa0222850:CDS | 35.0% | |
| ! | TTTTTCCTGAAGAAGCGATT+TGG | + | chr2_1:72296128-72296147 | Msa0222850:intron | 35.0% |
| GGACAAAAAGATGCATATGT+TGG | + | chr2_1:72296518-72296537 | Msa0222850:CDS | 35.0% | |
| !!! | ATTTTCTCACGATTAGCCTT+TGG | - | chr2_1:72296713-72296732 | None:intergenic | 35.0% |
| TGAATAGCAACATACATAGC+AGG | - | chr2_1:72296767-72296786 | None:intergenic | 35.0% | |
| ! | TGCTATGTATGTTGCTATTC+AGG | + | chr2_1:72296766-72296785 | Msa0222850:CDS | 35.0% |
| TAAATCGGGAAATGACTAAC+CGG | - | chr2_1:72296825-72296844 | None:intergenic | 35.0% | |
| !! | TGCAAGGTTCAGTTTGTTAA+TGG | + | chr2_1:72296921-72296940 | Msa0222850:intron | 35.0% |
| GTTAAGTTCATGGGAAAAAG+GGG | + | chr2_1:72296983-72297002 | Msa0222850:intron | 35.0% | |
| ! | AATATGTGCAGGTATTGTAC+TGG | + | chr2_1:72297091-72297110 | Msa0222850:intron | 35.0% |
| AGGGCATATCCTTCATAAAT+AGG | - | chr2_1:72297146-72297165 | None:intergenic | 35.0% | |
| ATCTCTTACAATTTCACGCT+CGG | - | chr2_1:72297267-72297286 | None:intergenic | 35.0% | |
| AAGCTCTTGCTCAAAATCAA+GGG | - | chr2_1:72297315-72297334 | None:intergenic | 35.0% | |
| AAGAGTTATGAACTTCCTGA+TGG | + | chr2_1:72297365-72297384 | Msa0222850:CDS | 35.0% | |
| GTGTGATGTTGATATCAGAA+AGG | + | chr2_1:72297505-72297524 | Msa0222850:CDS | 35.0% | |
| GATATCAGAAAGGACTTGTA+TGG | + | chr2_1:72297515-72297534 | Msa0222850:CDS | 35.0% | |
| AGAAAATACAGTGTCTGGAT+TGG | + | chr2_1:72297656-72297675 | Msa0222850:CDS | 35.0% | |
| ! | TTCTCTTAGCACTTTTCAAC+AGG | + | chr2_1:72297694-72297713 | Msa0222850:CDS | 35.0% |
| TTGAAAGATAGTCGTGAACG+TGG | + | chr2_1:72295437-72295456 | Msa0222850:five_prime_UTR | 40.0% | |
| !! | CTGTGATAATGGAACAGGAA+TGG | + | chr2_1:72296069-72296088 | Msa0222850:CDS | 40.0% |
| ! | TCTTTTCTACGATCTGCGAT+TGG | + | chr2_1:72296325-72296344 | Msa0222850:intron | 40.0% |
| ! | GTGATTTGCAACATTTAGGC+TGG | + | chr2_1:72296413-72296432 | Msa0222850:intron | 40.0% |
| AACATTTAGGCTGGATTTGC+TGG | + | chr2_1:72296422-72296441 | Msa0222850:intron | 40.0% | |
| TAGAGTCAATATACCACGCT+TGG | - | chr2_1:72296558-72296577 | None:intergenic | 40.0% | |
| CTCACAATACCATGCTCAAT+TGG | - | chr2_1:72296587-72296606 | None:intergenic | 40.0% | |
| AGCATGGTATTGTGAGTAAC+TGG | + | chr2_1:72296591-72296610 | Msa0222850:CDS | 40.0% | |
| GCATGGTATTGTGAGTAACT+GGG | + | chr2_1:72296592-72296611 | Msa0222850:CDS | 40.0% | |
| GGGATGACATGGAGAAAATT+TGG | + | chr2_1:72296612-72296631 | Msa0222850:CDS | 40.0% | |
| CACACGGAGTTCATTGTAAA+AGG | - | chr2_1:72296645-72296664 | None:intergenic | 40.0% | |
| ! | CTTTTACAATGAACTCCGTG+TGG | + | chr2_1:72296643-72296662 | Msa0222850:CDS | 40.0% |
| ACTAGCATAGAGCGATAGAA+CGG | - | chr2_1:72296792-72296811 | None:intergenic | 40.0% | |
| CTTCATAAATAGGCACAGTG+TGG | - | chr2_1:72297136-72297155 | None:intergenic | 40.0% | |
| CACACTGTGCCTATTTATGA+AGG | + | chr2_1:72297134-72297153 | Msa0222850:CDS | 40.0% | |
| ATCCTTCGTCTTGATTTAGC+AGG | + | chr2_1:72297176-72297195 | Msa0222850:CDS | 40.0% | |
| TCCTTCGTCTTGATTTAGCA+GGG | + | chr2_1:72297177-72297196 | Msa0222850:CDS | 40.0% | |
| !! | TTTTCATCAAGGCATCAGTG+AGG | - | chr2_1:72297208-72297227 | None:intergenic | 40.0% |
| ! | CTCGGTAAGGATTTTCATCA+AGG | - | chr2_1:72297219-72297238 | None:intergenic | 40.0% |
| AGTGAAAGAATAACCACGCT+CGG | - | chr2_1:72297237-72297256 | None:intergenic | 40.0% | |
| CAAGCTCTTGCTCAAAATCA+AGG | - | chr2_1:72297316-72297335 | None:intergenic | 40.0% | |
| GGAAATATTGTCCTTAGTGG+TGG | + | chr2_1:72297536-72297555 | Msa0222850:CDS | 40.0% | |
| ACATAGTAGTACCACCACTA+AGG | - | chr2_1:72297550-72297569 | None:intergenic | 40.0% | |
| ! | CAGACACTGTATTTTCTCTC+GGG | - | chr2_1:72297653-72297672 | None:intergenic | 40.0% |
| ! | CCAGACACTGTATTTTCTCT+CGG | - | chr2_1:72297654-72297673 | None:intergenic | 40.0% |
| ! | AAATACAGTGTCTGGATTGG+TGG | + | chr2_1:72297659-72297678 | Msa0222850:CDS | 40.0% |
| AGTGCTAAGAGAAGCTAAGA+TGG | - | chr2_1:72297687-72297706 | None:intergenic | 40.0% | |
| AAGGCATGCATAAATACACG+CGG | - | chr2_1:72297745-72297764 | None:intergenic | 40.0% | |
| ! | AATGCAGATGTGGATTGCAA+AGG | + | chr2_1:72297833-72297852 | Msa0222850:intron | 40.0% |
| !!! | GCTTTTAGAATGCTGCAGAA+TGG | + | chr2_1:72297898-72297917 | Msa0222850:exon | 40.0% |
| TAGAATGCTGCAGAATGGTT+TGG | + | chr2_1:72297903-72297922 | Msa0222850:exon | 40.0% | |
| ! | CTCTTTTGACGCACCATTTC+AGG | + | chr2_1:72295571-72295590 | Msa0222850:five_prime_UTR | 45.0% |
| TGATATGTTGGAGCTCGCAT+TGG | + | chr2_1:72295729-72295748 | Msa0222850:intron | 45.0% | |
| GACCAGTGGTTGAATATCCT+CGG | - | chr2_1:72296050-72296069 | None:intergenic | 45.0% | |
| ! | CAACCACTGGTCTGTGATAA+TGG | + | chr2_1:72296058-72296077 | Msa0222850:CDS | 45.0% |
| GTTCCATTATCACAGACCAG+TGG | - | chr2_1:72296064-72296083 | None:intergenic | 45.0% | |
| !! | CTGGTCTGTGATAATGGAAC+AGG | + | chr2_1:72296064-72296083 | Msa0222850:CDS | 45.0% |
| CATAGCCAAATCGCTTCTTC+AGG | - | chr2_1:72296136-72296155 | None:intergenic | 45.0% | |
| GCTGTGTTTCCTAGCATTGT+TGG | + | chr2_1:72296461-72296480 | Msa0222850:CDS | 45.0% | |
| TGTGAGTAACTGGGATGACA+TGG | + | chr2_1:72296601-72296620 | Msa0222850:CDS | 45.0% | |
| !! | CGATTAGCCTTTGGATTGAG+CGG | - | chr2_1:72296704-72296723 | None:intergenic | 45.0% |
| GTTCTATCGCTCTATGCTAG+TGG | + | chr2_1:72296791-72296810 | Msa0222850:CDS | 45.0% | |
| TATGCTAGTGGTCGAACAAC+CGG | + | chr2_1:72296803-72296822 | Msa0222850:CDS | 45.0% | |
| ! | ATTGTACTGGACTCTGGAGA+TGG | + | chr2_1:72297104-72297123 | Msa0222850:CDS | 45.0% |
| ACGAAGGATAGCATGTGGAA+GGG | - | chr2_1:72297165-72297184 | None:intergenic | 45.0% | |
| TCAAGACGAAGGATAGCATG+TGG | - | chr2_1:72297170-72297189 | None:intergenic | 45.0% | |
| ATGAAAATCCTTACCGAGCG+TGG | + | chr2_1:72297221-72297240 | Msa0222850:CDS | 45.0% | |
| AAGAATAACCACGCTCGGTA+AGG | - | chr2_1:72297232-72297251 | None:intergenic | 45.0% | |
| ATAGTGATGATCTGGCCATC+AGG | - | chr2_1:72297383-72297402 | None:intergenic | 45.0% | |
| GATGGCCAGATCATCACTAT+TGG | + | chr2_1:72297383-72297402 | Msa0222850:CDS | 45.0% | |
| CAGCTCCAATAGTGATGATC+TGG | - | chr2_1:72297391-72297410 | None:intergenic | 45.0% | |
| GGAAAAGAACCTCAGGACAA+CGG | - | chr2_1:72297421-72297440 | None:intergenic | 45.0% | |
| AACAGCTTCCATTCCAACCA+TGG | - | chr2_1:72297450-72297469 | None:intergenic | 45.0% | |
| ATGGTTGGAATGGAAGCTGT+TGG | + | chr2_1:72297449-72297468 | Msa0222850:CDS | 45.0% | |
| TCATTCTGTCAGCAATGCCA+GGG | - | chr2_1:72297574-72297593 | None:intergenic | 45.0% | |
| CATTGCTGACAGAATGAGCA+AGG | + | chr2_1:72297577-72297596 | Msa0222850:CDS | 45.0% | |
| ! | CTTGATCTTCATGCTGCTTG+GGG | - | chr2_1:72297618-72297637 | None:intergenic | 45.0% |
| ! | CCTTGATCTTCATGCTGCTT+GGG | - | chr2_1:72297619-72297638 | None:intergenic | 45.0% |
| ACCTTGATCTTCATGCTGCT+TGG | - | chr2_1:72297620-72297639 | None:intergenic | 45.0% | |
| AAGCAGCATGAAGATCAAGG+TGG | + | chr2_1:72297619-72297638 | Msa0222850:CDS | 45.0% | |
| ! | ACACTGTATTTTCTCTCGGG+TGG | - | chr2_1:72297650-72297669 | None:intergenic | 45.0% |
| CCGAGAGAAAATACAGTGTC+TGG | + | chr2_1:72297651-72297670 | Msa0222850:CDS | 45.0% | |
| CGCGGACAATGTGAGTATAT+CGG | - | chr2_1:72297727-72297746 | None:intergenic | 45.0% | |
| AGGACCAGATTCATCGTACT+CGG | - | chr2_1:72297859-72297878 | None:intergenic | 45.0% | |
| TCAATAGCGACTTGCAACGA+TGG | + | chr2_1:72297954-72297973 | Msa0222850:three_prime_UTR | 45.0% | |
| TCAACGGTTGCAGCTGAGAT+AGG | + | chr2_1:72295536-72295555 | Msa0222850:five_prime_UTR | 50.0% | |
| TTGCTGGAGATGATGCTCCA+AGG | + | chr2_1:72296438-72296457 | Msa0222850:CDS | 50.0% | |
| TGCTGGAGATGATGCTCCAA+GGG | + | chr2_1:72296439-72296458 | Msa0222850:CDS | 50.0% | |
| ATGCTAGGAAACACAGCCCT+TGG | - | chr2_1:72296458-72296477 | None:intergenic | 50.0% | |
| ACTGGTGTGATGGTTGGCAT+GGG | + | chr2_1:72296497-72296516 | Msa0222850:CDS | 50.0% | |
| GTGCTTCAGTGAGCAAAACC+GGG | - | chr2_1:72296682-72296701 | None:intergenic | 50.0% | |
| GGTGCTTCAGTGAGCAAAAC+CGG | - | chr2_1:72296683-72296702 | None:intergenic | 50.0% | |
| !! | TGAAGCACCGCTCAATCCAA+AGG | + | chr2_1:72296694-72296713 | Msa0222850:CDS | 50.0% |
| ! | GCAGGTATTGTACTGGACTC+TGG | + | chr2_1:72297098-72297117 | Msa0222850:intron | 50.0% |
| GACGAAGGATAGCATGTGGA+AGG | - | chr2_1:72297166-72297185 | None:intergenic | 50.0% | |
| GCCCTGCTAAATCAAGACGA+AGG | - | chr2_1:72297181-72297200 | None:intergenic | 50.0% | |
| TACAATTTCACGCTCGGCTG+TGG | - | chr2_1:72297261-72297280 | None:intergenic | 50.0% | |
| GAAGGCTGGAAAAGAACCTC+AGG | - | chr2_1:72297428-72297447 | None:intergenic | 50.0% | |
| ! | GGTTCTTTTCCAGCCTTCCA+TGG | + | chr2_1:72297430-72297449 | Msa0222850:CDS | 50.0% |
| ! | CTTTTCCAGCCTTCCATGGT+TGG | + | chr2_1:72297434-72297453 | Msa0222850:CDS | 50.0% |
| GCTTCCATTCCAACCATGGA+AGG | - | chr2_1:72297446-72297465 | None:intergenic | 50.0% | |
| GGTGGTACTACTATGTTCCC+TGG | + | chr2_1:72297554-72297573 | Msa0222850:CDS | 50.0% | |
| CTCATTCTGTCAGCAATGCC+AGG | - | chr2_1:72297575-72297594 | None:intergenic | 50.0% | |
| GAGCAAGGAAATTACCGCGT+TGG | + | chr2_1:72297592-72297611 | Msa0222850:CDS | 50.0% | |
| CCCAAGCAGCATGAAGATCA+AGG | + | chr2_1:72297616-72297635 | Msa0222850:CDS | 50.0% | |
| AAGGCCGAGTACGATGAATC+TGG | + | chr2_1:72297852-72297871 | Msa0222850:CDS | 50.0% | |
| !! | GCTGCAGAATGGTTTGGTGT+AGG | + | chr2_1:72297909-72297928 | Msa0222850:three_prime_UTR | 50.0% |
| TTAGACGGTGAAGTCAGCGA+AGG | + | chr2_1:72298012-72298031 | Msa0222850:three_prime_UTR | 50.0% | |
| AAAGACAATGGCAGACGCCG+AGG | + | chr2_1:72296030-72296049 | Msa0222850:exon | 55.0% | |
| CGCCGAGGATATTCAACCAC+TGG | + | chr2_1:72296045-72296064 | Msa0222850:CDS | 55.0% | |
| CGTGGTCGACCAACAATGCT+AGG | - | chr2_1:72296473-72296492 | None:intergenic | 55.0% | |
| TGCCAACCATCACACCAGTG+TGG | - | chr2_1:72296496-72296515 | None:intergenic | 55.0% | |
| CACTGGTGTGATGGTTGGCA+TGG | + | chr2_1:72296496-72296515 | Msa0222850:CDS | 55.0% | |
| GATGAAGCTCAGTCCAAGCG+TGG | + | chr2_1:72296542-72296561 | Msa0222850:CDS | 55.0% | |
| TGAGCGTTTCCGTTGTCCTG+AGG | + | chr2_1:72297409-72297428 | Msa0222850:CDS | 55.0% | |
| CCATTCCAACCATGGAAGGC+TGG | - | chr2_1:72297442-72297461 | None:intergenic | 55.0% | |
| CCAGCCTTCCATGGTTGGAA+TGG | + | chr2_1:72297439-72297458 | Msa0222850:CDS | 55.0% | |
| ACCACGCCACACTGGTGTGA+TGG | + | chr2_1:72296487-72296506 | Msa0222850:CDS | 60.0% | |
| ACCATCACACCAGTGTGGCG+TGG | - | chr2_1:72296491-72296510 | None:intergenic | 60.0% | |
| CGCCACACTGGTGTGATGGT+TGG | + | chr2_1:72296491-72296510 | Msa0222850:CDS | 60.0% | |
| CAAAACCGGGTGCTCCTCTG+GGG | - | chr2_1:72296669-72296688 | None:intergenic | 60.0% | |
| GCAAAACCGGGTGCTCCTCT+GGG | - | chr2_1:72296670-72296689 | None:intergenic | 60.0% | |
| AGCAAAACCGGGTGCTCCTC+TGG | - | chr2_1:72296671-72296690 | None:intergenic | 60.0% | |
| GTTGGTCGACCACGCCACAC+TGG | + | chr2_1:72296479-72296498 | Msa0222850:CDS | 65.0% | |
| TGAACTCCGTGTGGCCCCAG+AGG | + | chr2_1:72296652-72296671 | Msa0222850:CDS | 65.0% | |
| ! | CATGCTGCTTGGGGCCAACG+CGG | - | chr2_1:72297609-72297628 | None:intergenic | 65.0% |
| !! | GGTGCTCCTCTGGGGCCACA+CGG | - | chr2_1:72296661-72296680 | None:intergenic | 70.0% |
| !! | TGTGGCCCCAGAGGAGCACC+CGG | + | chr2_1:72296661-72296680 | Msa0222850:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 72295376 | 72298082 | 72295376 | ID=Msa0222850;Name=Msa0222850 |
| chr2_1 | mRNA | 72295376 | 72298082 | 72295376 | ID=Msa0222850-mRNA-1;Parent=Msa0222850;Name=Msa0222850-mRNA-1;_AED=0.06;_eAED=0.06;_QI=230|1|1|1|0.75|0.6|5|177|377 |
| chr2_1 | exon | 72295376 | 72295592 | 72295376 | ID=Msa0222850-mRNA-1:exon:20896;Parent=Msa0222850-mRNA-1 |
| chr2_1 | exon | 72296024 | 72296096 | 72296024 | ID=Msa0222850-mRNA-1:exon:20897;Parent=Msa0222850-mRNA-1 |
| chr2_1 | exon | 72296431 | 72296824 | 72296431 | ID=Msa0222850-mRNA-1:exon:20898;Parent=Msa0222850-mRNA-1 |
| chr2_1 | exon | 72297102 | 72297715 | 72297102 | ID=Msa0222850-mRNA-1:exon:20899;Parent=Msa0222850-mRNA-1 |
| chr2_1 | exon | 72297840 | 72298082 | 72297840 | ID=Msa0222850-mRNA-1:exon:20900;Parent=Msa0222850-mRNA-1 |
| chr2_1 | five_prime_UTR | 72295376 | 72295592 | 72295376 | ID=Msa0222850-mRNA-1:five_prime_utr;Parent=Msa0222850-mRNA-1 |
| chr2_1 | five_prime_UTR | 72296024 | 72296036 | 72296024 | ID=Msa0222850-mRNA-1:five_prime_utr;Parent=Msa0222850-mRNA-1 |
| chr2_1 | CDS | 72296037 | 72296096 | 72296037 | ID=Msa0222850-mRNA-1:cds;Parent=Msa0222850-mRNA-1 |
| chr2_1 | CDS | 72296431 | 72296824 | 72296431 | ID=Msa0222850-mRNA-1:cds;Parent=Msa0222850-mRNA-1 |
| chr2_1 | CDS | 72297102 | 72297715 | 72297102 | ID=Msa0222850-mRNA-1:cds;Parent=Msa0222850-mRNA-1 |
| chr2_1 | CDS | 72297840 | 72297905 | 72297840 | ID=Msa0222850-mRNA-1:cds;Parent=Msa0222850-mRNA-1 |
| chr2_1 | three_prime_UTR | 72297906 | 72298082 | 72297906 | ID=Msa0222850-mRNA-1:three_prime_utr;Parent=Msa0222850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
