AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0279800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279800 MtrunA17_Chr2g0293441 95.502 289 13 0 283 571 25 313 0.0 574
Msa0279800 MtrunA17_Chr2g0293451 95.098 204 7 2 17 218 11 213 6.19e-126 371
Msa0279800 MtrunA17_Chr8g0352621 46.795 312 162 1 264 571 1 312 7.36e-100 305
Msa0279800 MtrunA17_Chr3g0083901 47.751 289 151 0 281 569 23 311 2.77e-99 304
Msa0279800 MtrunA17_Chr5g0425971 47.945 292 152 0 279 570 22 313 1.04e-97 300
Msa0279800 MtrunA17_Chr3g0083921 47.059 289 153 0 283 571 25 313 2.69e-92 286
Msa0279800 MtrunA17_Chr8g0352611 44.932 296 162 1 276 571 18 312 4.30e-87 272
Msa0279800 MtrunA17_Chr8g0352591 45.704 291 147 1 279 569 21 300 2.19e-86 270
Msa0279800 MtrunA17_Chr8g0382281 43.643 291 164 0 281 571 24 314 9.01e-81 256
Msa0279800 MtrunA17_Chr8g0352571 37.329 292 180 1 281 569 24 315 1.59e-60 203
Msa0279800 MtrunA17_Chr8g0393281 35.616 292 186 2 279 569 22 312 9.80e-60 201
Msa0279800 MtrunA17_Chr6g0479411 35.135 296 190 2 275 569 45 339 3.52e-59 200
Msa0279800 MtrunA17_Chr6g0479421 35.473 296 189 2 275 569 18 312 2.24e-57 194
Msa0279800 MtrunA17_Chr8g0352581 37.618 319 174 6 268 569 1 311 1.11e-55 190
Msa0279800 MtrunA17_Chr1g0210981 34.122 296 193 2 275 569 18 312 2.98e-54 186
Msa0279800 MtrunA17_Chr1g0162071 33.333 294 194 2 279 571 22 314 1.10e-53 185
Msa0279800 MtrunA17_Chr6g0479391 33.784 296 194 2 275 569 18 312 1.30e-51 179
Msa0279800 MtrunA17_Chr6g0461141 26.277 274 194 4 302 567 34 307 8.21e-25 105
Msa0279800 MtrunA17_Chr3g0084021 44.118 68 38 0 402 469 5 72 9.73e-15 69.3
Msa0279800 MtrunA17_Chr3g0084011 55.102 49 22 0 283 331 25 73 3.19e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0279800 AT5G12380.1 59.028 288 118 0 283 570 25 312 2.21e-120 358
Msa0279800 AT5G10230.1 46.441 295 158 0 277 571 20 314 1.40e-92 287
Msa0279800 AT5G10220.1 47.458 295 153 1 279 571 22 316 7.00e-92 285
Msa0279800 AT1G35720.1 45.205 292 159 1 281 571 24 315 3.10e-89 278
Msa0279800 AT5G65020.1 43.345 293 165 1 279 570 22 314 1.90e-84 266
Msa0279800 AT4G20760.1 75.740 169 41 0 50 218 44 212 2.49e-83 262
Msa0279800 AT5G65020.2 43.253 289 163 1 283 570 11 299 3.36e-83 262
Msa0279800 AT4G20760.2 75.740 169 41 0 50 218 64 232 6.34e-83 262
Msa0279800 AT2G38760.1 41.017 295 168 2 283 571 26 320 8.92e-70 228
Msa0279800 AT1G68090.1 32.154 311 207 2 263 569 3 313 1.25e-54 187
Msa0279800 AT2G38750.1 34.713 314 180 6 273 568 9 315 1.48e-50 177
Msa0279800 AT2G38750.2 35.082 305 173 6 282 568 1 298 2.45e-50 176
Msa0279800 AT1G68090.2 31.452 248 166 2 263 506 3 250 1.93e-40 147

Find 110 sgRNAs with CRISPR-Local

Find 328 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGACTTTCAATATCTTTA+AGG 0.055725 2_3:-13927421 Msa0279800:CDS
GTATTTCTGTCTTTGTTTCT+TGG 0.183447 2_3:-13932965 Msa0279800:five_prime_UTR
AAGTCATCTTACCTTATTAA+TGG 0.196321 2_3:+13927383 None:intergenic
TTCAATCAATTGATGAAGTA+TGG 0.245555 2_3:+13927509 None:intergenic
CATTGTTTCTCTTCAGAAAA+TGG 0.270523 2_3:+13926932 None:intergenic
TAATGATGTGCAACAACTTT+TGG 0.278163 2_3:+13930010 None:intergenic
TTACCTTGGCTAAATATCTT+TGG 0.286851 2_3:+13927157 None:intergenic
AGAAACCACATTGAACAAAT+TGG 0.288395 2_3:-13930877 Msa0279800:CDS
ATCTCACGCCTTGAATGATT+TGG 0.303941 2_3:-13927025 Msa0279800:CDS
TTACCTGGTTGCAGCACTTC+AGG 0.309608 2_3:+13931184 None:intergenic
CAGCTCAAAACTGAACTTTC+AGG 0.310428 2_3:-13928082 Msa0279800:CDS
TCGTGCAGAGAAGGACTTAA+AGG 0.320396 2_3:-13926965 Msa0279800:CDS
TTTCAATTGTAGGGATTATC+AGG 0.320601 2_3:-13927240 Msa0279800:intron
TAGAAATACTGAAGAGCTTC+TGG 0.326830 2_3:-13927806 Msa0279800:CDS
CATTTGATGCATTAGGATTA+CGG 0.334106 2_3:+13932446 None:intergenic
AGAAGCCCATTTGATGCATT+AGG 0.345666 2_3:+13932439 None:intergenic
ATCTTTAATGCTTTCTTATG+AGG 0.347301 2_3:-13930847 Msa0279800:CDS
GTATGGCACAACCATTAATA+AGG 0.354944 2_3:-13927394 Msa0279800:intron
TGAAGAAGAGAATGCTCTTC+TGG 0.356280 2_3:+13932819 None:intergenic
TCAATAATCACTTTGTAATC+TGG 0.360081 2_3:+13927841 None:intergenic
AATATCTTTAAGGACTTGTA+TGG 0.373979 2_3:-13927411 Msa0279800:CDS
AGTGCAAGGGTTGCATCTAT+TGG 0.379178 2_3:-13930554 Msa0279800:CDS
CATTAATGAGAAGGTTTAGA+TGG 0.381244 2_3:+13931227 None:intergenic
CGTAATCCTAATGCATCAAA+TGG 0.385558 2_3:-13932445 Msa0279800:CDS
CTTAAAGCTGGAGGTGGCAT+TGG 0.391361 2_3:-13930611 Msa0279800:CDS
TTCATTTGCCAAATCATTCA+AGG 0.394711 2_3:+13927017 None:intergenic
GCTCCAATGTATTCATCAAT+TGG 0.396159 2_3:+13927213 None:intergenic
ATTCATTTCCCAACAATTCA+AGG 0.397289 2_3:+13926854 None:intergenic
AACCTTCTCATTAATGCATC+TGG 0.398628 2_3:-13931220 Msa0279800:CDS
AAATGGGCTTCTTCATTTGA+AGG 0.405028 2_3:-13932428 Msa0279800:CDS
GAGAGGCAACATCTTCTTCA+AGG 0.414127 2_3:+13927746 None:intergenic
TCATCATCTTCTCAAGCTAA+TGG 0.425069 2_3:-13932796 Msa0279800:CDS
ATCCATTGTCCAATGACTAA+TGG 0.425161 2_3:+13927915 None:intergenic
TGCAATAGAATACATATGAT+TGG 0.426249 2_3:+13930117 None:intergenic
TAATGCCGTCGGTCCTATCT+TGG 0.436507 2_3:-13930823 Msa0279800:CDS
CAATGGCAAGTTCTTTGCTT+GGG 0.439897 2_3:-13929968 Msa0279800:CDS
AATGGTGTTTCCTTAGTTCA+AGG 0.447999 2_3:-13932778 Msa0279800:CDS
TTAAAGCTGGAGGTGGCATT+GGG 0.448490 2_3:-13930610 Msa0279800:CDS
TTCATTTCGGTGTGCTAGTA+CGG 0.451418 2_3:+13928165 None:intergenic
TTGTGGCTAGTTTGAGTGCA+AGG 0.455555 2_3:-13930568 Msa0279800:CDS
TCTGGAAGCTCCTTGAACTA+AGG 0.459833 2_3:+13932768 None:intergenic
TTATCAAGAAATTTATCATC+AGG 0.460775 2_3:-13928116 Msa0279800:CDS
TGAACTTTCAGGAAACTTTG+AGG 0.461813 2_3:-13928071 Msa0279800:intron
CTATTGGCGATAATCGTCTC+GGG 0.464427 2_3:-13930538 Msa0279800:CDS
GGCAAGTTCTTTGCTTGGGA+TGG 0.471669 2_3:-13929964 Msa0279800:CDS
TCAAAGAAAACTTGTGAGGC+TGG 0.474305 2_3:-13928140 Msa0279800:CDS
GTTACCTTGATAACCAAGAT+AGG 0.479512 2_3:+13930810 None:intergenic
CGGTCCTATCTTGGTTATCA+AGG 0.479719 2_3:-13930814 Msa0279800:intron
CAAGGAGCTTCCAGAGGAAT+CGG 0.479788 2_3:-13932760 Msa0279800:CDS
ACAATGGCAAGTTCTTTGCT+TGG 0.481131 2_3:-13929969 Msa0279800:CDS
GACTGTTGAAAGTTCTATTG+AGG 0.482023 2_3:-13932365 Msa0279800:intron
ATCAGAGAGCCATTAGTCAT+TGG 0.483585 2_3:-13927924 Msa0279800:intron
ATGTGGCCTCTTCTTAAAGC+TGG 0.492856 2_3:-13930623 Msa0279800:CDS
GAATTCAAGACCGATTCCTC+TGG 0.498734 2_3:+13932750 None:intergenic
AGTGTAGCATCTCTTTCAGC+TGG 0.500813 2_3:+13927892 None:intergenic
TATTAATGAGGCACTAAAGA+AGG 0.504365 2_3:-13927869 Msa0279800:CDS
CCATGGCTTCACGTTCCCCT+CGG 0.507270 2_3:-13932855 Msa0279800:CDS
GGGATGGTCAAGAAATTCCT+TGG 0.508072 2_3:-13929948 Msa0279800:intron
AGATCTGTGTCAACTGTACC+AGG 0.510748 2_3:+13930093 None:intergenic
GGCAATGCTTGTAAAGAGAA+TGG 0.512438 2_3:+13927767 None:intergenic
CCCCACTCTTAACACTTCCA+TGG 0.516534 2_3:-13932872 Msa0279800:CDS
TTGTCAATAAAAGAGACATA+TGG 0.523455 2_3:-13931250 Msa0279800:CDS
CTTCTCCAATTTGTTCAATG+TGG 0.532375 2_3:+13930872 None:intergenic
CCATTCATGATTCTGTTGCT+AGG 0.535196 2_3:-13926906 Msa0279800:CDS
GATGTTGCCTCTCAAACTAC+TGG 0.536143 2_3:-13927736 Msa0279800:CDS
GCCATGGAAGTGTTAAGAGT+GGG 0.537228 2_3:+13932871 None:intergenic
GGAAAGAAGTGGTGCAGTTG+TGG 0.541874 2_3:-13930585 Msa0279800:CDS
CCGAGGGGAACGTGAAGCCA+TGG 0.545507 2_3:+13932855 None:intergenic
ATTCTGTTGCTAGGAAGACA+TGG 0.545887 2_3:-13926897 Msa0279800:CDS
TCTATTGGCGATAATCGTCT+CGG 0.545892 2_3:-13930539 Msa0279800:CDS
TGCCAGATGCATTAATGAGA+AGG 0.549104 2_3:+13931218 None:intergenic
TGTGGCTAGTTTGAGTGCAA+GGG 0.561568 2_3:-13930567 Msa0279800:CDS
CCTCTTCTTAAAGCTGGAGG+TGG 0.561667 2_3:-13930617 Msa0279800:CDS
CCTAGCAACAGAATCATGAA+TGG 0.562607 2_3:+13926906 None:intergenic
GTAATCCTAATGCATCAAAT+GGG 0.565802 2_3:-13932444 Msa0279800:CDS
AGTCCAATTGATGAATACAT+TGG 0.565821 2_3:-13927216 Msa0279800:CDS
TCTTATGAGGTTAATGCCGT+CGG 0.566525 2_3:-13930834 Msa0279800:CDS
CCACCTCCAGCTTTAAGAAG+AGG 0.569003 2_3:+13930617 None:intergenic
TATCGTCACTCGTGCAGAGA+AGG 0.572532 2_3:-13926974 Msa0279800:CDS
AGCTGGAGGTGGCATTGGGA+CGG 0.573880 2_3:-13930606 Msa0279800:CDS
ATATGTATTCTATTGCATCC+TGG 0.575422 2_3:-13930111 Msa0279800:CDS
TGGCCTCTTCTTAAAGCTGG+AGG 0.586099 2_3:-13930620 Msa0279800:CDS
TGGCTAGTGATAGAAGCCGA+GGG 0.589776 2_3:+13932839 None:intergenic
CAAAGAACTTGCCATTGTCA+TGG 0.596876 2_3:+13929974 None:intergenic
AGATGCTACACTTATTAATG+AGG 0.597858 2_3:-13927881 Msa0279800:CDS
CTGGCTAGTGATAGAAGCCG+AGG 0.605793 2_3:+13932838 None:intergenic
GCTGTCATCGATGCAACGAA+CGG 0.606760 2_3:+13927179 None:intergenic
ATACCTGAAGTGCTGCAACC+AGG 0.607063 2_3:-13931187 Msa0279800:intron
CATGGAAGTGTTAAGAGTGG+GGG 0.614383 2_3:+13932873 None:intergenic
TATTGGCGATAATCGTCTCG+GGG 0.615665 2_3:-13930537 Msa0279800:CDS
TTCTGTTGCTAGGAAGACAT+GGG 0.615900 2_3:-13926896 Msa0279800:CDS
AATTTCTAAATCAGCACATG+TGG 0.616873 2_3:-13930640 Msa0279800:intron
AATATCACCAGTAGTTTGAG+AGG 0.620279 2_3:+13927729 None:intergenic
GGCATTGGGACGGAAAGAAG+TGG 0.627744 2_3:-13930596 Msa0279800:CDS
CTTTCAACAGTCAAATCCAA+AGG 0.633353 2_3:+13932376 None:intergenic
CCATGGAAGTGTTAAGAGTG+GGG 0.635074 2_3:+13932872 None:intergenic
TTAGTTCAAGGAGCTTCCAG+AGG 0.637415 2_3:-13932766 Msa0279800:CDS
AAGCTCAAAGAAAACTTGTG+AGG 0.650998 2_3:-13928144 Msa0279800:CDS
CAGCCAAAGATATTTAGCCA+AGG 0.651781 2_3:-13927160 Msa0279800:intron
AGCCATTAGTCATTGGACAA+TGG 0.653584 2_3:-13927917 Msa0279800:CDS
AGCCATGGAAGTGTTAAGAG+TGG 0.666238 2_3:+13932870 None:intergenic
AATGTCAAGAGCCATGACAA+TGG 0.667426 2_3:-13929985 Msa0279800:CDS
AGAGAAAAGAACATGAAGCG+TGG 0.679057 2_3:+13932931 None:intergenic
GATAACCAAGATAGGACCGA+CGG 0.679582 2_3:+13930818 None:intergenic
AGATGAGTTTGATGAGAATG+TGG 0.686942 2_3:-13927547 Msa0279800:CDS
ATGGAAGTGTTAAGAGTGGG+GGG 0.687072 2_3:+13932874 None:intergenic
ATAAGCACTTACAAGTACGA+TGG 0.694159 2_3:-13927570 Msa0279800:CDS
ATTGGCGATAATCGTCTCGG+GGG 0.707865 2_3:-13930536 Msa0279800:CDS
TCTGTTGCTAGGAAGACATG+GGG 0.714554 2_3:-13926895 Msa0279800:CDS
GGCTAGTGATAGAAGCCGAG+GGG 0.717127 2_3:+13932840 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAAATGAAAAAAATATTT+TGG + chr2_3:13927932-13927951 None:intergenic 10.0%
!! TGTATTTATTATAATATTTC+AGG - chr2_3:13928547-13928566 Msa0279800:intron 10.0%
!!! ATAATTTTAGAAGTAAAATT+GGG - chr2_3:13929091-13929110 Msa0279800:intron 10.0%
!! ATATTTATTTATTAGTGATA+TGG - chr2_3:13930294-13930313 Msa0279800:intron 10.0%
!! TTCCAAAAAAAAAAAAAAAA+TGG + chr2_3:13930985-13931004 None:intergenic 10.0%
!!! TTTTTTTTTTTTTGGAAATT+AGG - chr2_3:13930988-13931007 Msa0279800:intron 10.0%
!! AGTTATTATTATATTGAAAA+GGG - chr2_3:13931155-13931174 Msa0279800:intron 10.0%
!!! AAAGAAAAACATTGTTTTTA+AGG + chr2_3:13927119-13927138 None:intergenic 15.0%
!!! ATGAAGAAAAGTAATTTTTT+TGG + chr2_3:13927165-13927184 None:intergenic 15.0%
!!! AAAAAAATTACTTTTCTTCA+TGG - chr2_3:13927164-13927183 Msa0279800:CDS 15.0%
!!! AAAAAATTACTTTTCTTCAT+GGG - chr2_3:13927165-13927184 Msa0279800:CDS 15.0%
!!! TTTAGCTAATATTTAACTTT+AGG - chr2_3:13927673-13927692 Msa0279800:intron 15.0%
!! TTTATTTGTTTATCTATTTG+TGG - chr2_3:13929068-13929087 Msa0279800:intron 15.0%
!!! GATAATTTTAGAAGTAAAAT+TGG - chr2_3:13929090-13929109 Msa0279800:intron 15.0%
!! AAAACAACTTATAGATTATA+TGG - chr2_3:13929546-13929565 Msa0279800:intron 15.0%
!!! TTAGCAATATTTTTTTGAAA+TGG + chr2_3:13929768-13929787 None:intergenic 15.0%
!!! TAAAAACATTGATTATTAGT+CGG - chr2_3:13930381-13930400 Msa0279800:intron 15.0%
!!! GTCCATTTTTTTTTTTTTTT+TGG - chr2_3:13930980-13930999 Msa0279800:intron 15.0%
!! CAGTTATTATTATATTGAAA+AGG - chr2_3:13931154-13931173 Msa0279800:intron 15.0%
!! AAAAAACGTATTTAGTTATT+AGG - chr2_3:13931255-13931274 Msa0279800:CDS 15.0%
!!! TTAGTTATTAGGAATATTTT+AGG - chr2_3:13931266-13931285 Msa0279800:intron 15.0%
!!! AAAAATTACTTTTCTTCATG+GGG - chr2_3:13927166-13927185 Msa0279800:CDS 20.0%
!!! TTGTGTTTTGTATTGTATAT+AGG - chr2_3:13927310-13927329 Msa0279800:intron 20.0%
!! AAGAAAGAAAAACAATGAAT+GGG + chr2_3:13927502-13927521 None:intergenic 20.0%
!! AAAGAAAGAAAAACAATGAA+TGG + chr2_3:13927503-13927522 None:intergenic 20.0%
!! TCTTTATCCATATTAACTTT+AGG + chr2_3:13927617-13927636 None:intergenic 20.0%
!! TTATATCCTCAAATAATCTT+TGG - chr2_3:13927795-13927814 Msa0279800:CDS 20.0%
!!! ATGAAAAAAATATTTTGGCA+AGG + chr2_3:13927927-13927946 None:intergenic 20.0%
!! ATTCTTAGTTGTATCAAAAT+GGG - chr2_3:13928063-13928082 Msa0279800:intron 20.0%
!!! TTAACAAATGAATAGGTTTT+TGG + chr2_3:13928521-13928540 None:intergenic 20.0%
!!! TAAAGATTTGTTTCATTCTT+TGG - chr2_3:13928664-13928683 Msa0279800:intron 20.0%
!! CTAAAAACAGAATAATCAAA+AGG - chr2_3:13928745-13928764 Msa0279800:intron 20.0%
!! CTTATCATATTGAATATAAC+AGG + chr2_3:13929386-13929405 None:intergenic 20.0%
!! ATATGATAAACTGTTTGAAA+TGG - chr2_3:13929607-13929626 Msa0279800:intron 20.0%
!!! ATATTTGTTGTTGAAGATAA+AGG - chr2_3:13930025-13930044 Msa0279800:CDS 20.0%
!!! AAAAACATTGATTATTAGTC+GGG - chr2_3:13930382-13930401 Msa0279800:intron 20.0%
!! AAAGAATATAGTGATGATAA+GGG - chr2_3:13930419-13930438 Msa0279800:intron 20.0%
!! TTATCATATTTCTTTATCGT+TGG + chr2_3:13930694-13930713 None:intergenic 20.0%
!! TCCTCAAAAAATAAAAATGT+AGG - chr2_3:13930889-13930908 Msa0279800:intron 20.0%
!!! TCCTACATTTTTATTTTTTG+AGG + chr2_3:13930893-13930912 None:intergenic 20.0%
!! TATATCCATGCAATAATATA+TGG + chr2_3:13931028-13931047 None:intergenic 20.0%
!!! GAAAATGTTTTATGTAAAAG+TGG + chr2_3:13931100-13931119 None:intergenic 20.0%
!!! GTTTTTTTTCTTCTTCTTTT+AGG - chr2_3:13931200-13931219 Msa0279800:CDS 20.0%
!! ATATTCATGTCTAATAACAA+AGG - chr2_3:13931550-13931569 Msa0279800:intron 20.0%
!! TATTCATGTCTAATAACAAA+GGG - chr2_3:13931551-13931570 Msa0279800:intron 20.0%
!! TTATCAAGAAATTTATCATC+AGG - chr2_3:13931712-13931731 Msa0279800:intron 20.0%
!!! ATTTCCATGGTATAAATTTT+TGG + chr2_3:13931886-13931905 None:intergenic 20.0%
!! TATTTCATGCAATAAAATCA+AGG - chr2_3:13932540-13932559 Msa0279800:intron 20.0%
!!! AATTTGTTGTTTTCAATTGT+AGG - chr2_3:13932578-13932597 Msa0279800:intron 20.0%
!!! ATTTGTTGTTTTCAATTGTA+GGG - chr2_3:13932579-13932598 Msa0279800:intron 20.0%
!!! CAATAATAATTTTGTGATGT+TGG + chr2_3:13932697-13932716 None:intergenic 20.0%
!! AGAAATTATCAAATAGAGAA+TGG + chr2_3:13932726-13932745 None:intergenic 20.0%
!!! ATTTTTATCCTTGAATTGTT+GGG - chr2_3:13932966-13932985 Msa0279800:five_prime_UTR 20.0%
!!! TTTTCTCTGTTTTTTAGTCT+AGG - chr2_3:13927197-13927216 Msa0279800:CDS 25.0%
! ATACAATACAAAACACAACA+CGG + chr2_3:13927308-13927327 None:intergenic 25.0%
!!! TTCTAGTCTTGTAACTAAAA+GGG + chr2_3:13927580-13927599 None:intergenic 25.0%
!!! TGTTTTTTATCTTAACCTTC+CGG + chr2_3:13927879-13927898 None:intergenic 25.0%
!!! CATTTTGATACAACTAAGAA+TGG + chr2_3:13928064-13928083 None:intergenic 25.0%
! CATTCTTAGTTGTATCAAAA+TGG - chr2_3:13928062-13928081 Msa0279800:intron 25.0%
! TTCTTAGTTGTATCAAAATG+GGG - chr2_3:13928064-13928083 Msa0279800:intron 25.0%
! AATTTAATGTGATCAGCTAT+AGG - chr2_3:13928451-13928470 Msa0279800:intron 25.0%
! ACAAAGCTTAACAAATGAAT+AGG + chr2_3:13928528-13928547 None:intergenic 25.0%
! TTGTCAATAAAAGAGACATA+TGG - chr2_3:13928578-13928597 Msa0279800:intron 25.0%
! TTTGTTTCATTCTTTGGTAA+TGG - chr2_3:13928670-13928689 Msa0279800:intron 25.0%
! GAATACATGAAGAAAAACTT+GGG + chr2_3:13928708-13928727 None:intergenic 25.0%
! AAAAAGTAATGAGTGTGTAA+TGG - chr2_3:13928827-13928846 Msa0279800:intron 25.0%
! ATCTTTAATGCTTTCTTATG+AGG - chr2_3:13928981-13929000 Msa0279800:intron 25.0%
! AAGCACTTGTAGAATTATTT+GGG - chr2_3:13929454-13929473 Msa0279800:intron 25.0%
!! ATGTTATAAGCTATTTCCAT+AGG + chr2_3:13929484-13929503 None:intergenic 25.0%
! TGCAATAGAATACATATGAT+TGG + chr2_3:13929714-13929733 None:intergenic 25.0%
! TATCATACATGCTATGTTAT+TGG + chr2_3:13929925-13929944 None:intergenic 25.0%
! AAAAGTAGTTAAATCAACCA+CGG + chr2_3:13930257-13930276 None:intergenic 25.0%
! GAAAGAATATAGTGATGATA+AGG - chr2_3:13930418-13930437 Msa0279800:intron 25.0%
!! AACAAAACTATTTTCGTAGT+TGG - chr2_3:13930752-13930771 Msa0279800:intron 25.0%
! AAATATGGAGGAAAATATGT+AGG - chr2_3:13930855-13930874 Msa0279800:CDS 25.0%
!!! CGTAATTGATTGCTTTTTTT+AGG - chr2_3:13931064-13931083 Msa0279800:intron 25.0%
!!! TATTAGGAATATTTTAGGAC+TGG - chr2_3:13931271-13931290 Msa0279800:intron 25.0%
! GCTTGAAGAAAGAAAAAAAA+TGG - chr2_3:13931394-13931413 Msa0279800:intron 25.0%
!! AAGGGAATAAATTTTATTCG+AGG - chr2_3:13931569-13931588 Msa0279800:intron 25.0%
!! ATGTGATTTTTATCATGTAC+AGG - chr2_3:13931611-13931630 Msa0279800:intron 25.0%
!! TTTTTATCATGTACAGGATT+CGG - chr2_3:13931617-13931636 Msa0279800:intron 25.0%
! ATTGCCAAAAATTTATACCA+TGG - chr2_3:13931879-13931898 Msa0279800:intron 25.0%
! TCAATAATCACTTTGTAATC+TGG + chr2_3:13931990-13932009 None:intergenic 25.0%
!!! AACAGTTTTGTTATGTTACA+TGG - chr2_3:13932168-13932187 Msa0279800:intron 25.0%
! TTCAATCAATTGATGAAGTA+TGG + chr2_3:13932322-13932341 None:intergenic 25.0%
! TGTGACTTTCAATATCTTTA+AGG - chr2_3:13932407-13932426 Msa0279800:CDS 25.0%
!! AATATCTTTAAGGACTTGTA+TGG - chr2_3:13932417-13932436 Msa0279800:CDS 25.0%
! AAGTCATCTTACCTTATTAA+TGG + chr2_3:13932448-13932467 None:intergenic 25.0%
!!! TTCTTTGAGAAATCTTTTGA+AGG + chr2_3:13932505-13932524 None:intergenic 25.0%
! CAATAAAATCAAGGATATCA+TGG - chr2_3:13932549-13932568 Msa0279800:intron 25.0%
!! TGTGTATGTTAACTTGATTT+AGG - chr2_3:13932776-13932795 Msa0279800:CDS 25.0%
!! GATTTTTATCCTTGAATTGT+TGG - chr2_3:13932965-13932984 Msa0279800:five_prime_UTR 25.0%
! GTATTTCTGTCTTTGTTTCT+TGG - chr2_3:13926863-13926882 Msa0279800:CDS 30.0%
!!! TTTTTTGGCAATGTAGTGAA+TGG + chr2_3:13927150-13927169 None:intergenic 30.0%
AACTAAAAACTCTATACCAC+CGG + chr2_3:13927284-13927303 None:intergenic 30.0%
CATTTGATGCATTAGGATTA+CGG + chr2_3:13927385-13927404 None:intergenic 30.0%
GTAATCCTAATGCATCAAAT+GGG - chr2_3:13927384-13927403 Msa0279800:intron 30.0%
!! CTTCTAGTCTTGTAACTAAA+AGG + chr2_3:13927581-13927600 None:intergenic 30.0%
!! CTTTTAGTTACAAGACTAGA+AGG - chr2_3:13927579-13927598 Msa0279800:CDS 30.0%
GCTAAAGCCTAAAGTTAATA+TGG - chr2_3:13927607-13927626 Msa0279800:intron 30.0%
TAGATATGAGATTTGTGACA+AGG - chr2_3:13927637-13927656 Msa0279800:intron 30.0%
ATTGAGTCTAACAACATAGA+AGG + chr2_3:13927733-13927752 None:intergenic 30.0%
TCTATGTTGTTAGACTCAAT+TGG - chr2_3:13927733-13927752 Msa0279800:CDS 30.0%
ACATTTCAACAATGCTACAT+TGG - chr2_3:13927971-13927990 Msa0279800:intron 30.0%
TCTTAGTTGTATCAAAATGG+GGG - chr2_3:13928065-13928084 Msa0279800:intron 30.0%
! TGCAATATCTTTTATGCTCA+AGG + chr2_3:13928109-13928128 None:intergenic 30.0%
CTTATCAGCGTAGTAAATAA+TGG + chr2_3:13928140-13928159 None:intergenic 30.0%
GTGATTTCAATTGTATATCG+CGG - chr2_3:13928159-13928178 Msa0279800:CDS 30.0%
GTTCAAATTCTACTATGCTA+TGG - chr2_3:13928195-13928214 Msa0279800:CDS 30.0%
CTATAGCGAATTTGAACAAA+TGG + chr2_3:13928289-13928308 None:intergenic 30.0%
GGAAGGATTAACAAATATAG+CGG - chr2_3:13928378-13928397 Msa0279800:intron 30.0%
TTTCTATCAAGACTGGTATT+AGG - chr2_3:13928404-13928423 Msa0279800:intron 30.0%
CATTAATGAGAAGGTTTAGA+TGG + chr2_3:13928604-13928623 None:intergenic 30.0%
GAATGAAACAAATCTTTACC+TGG + chr2_3:13928662-13928681 None:intergenic 30.0%
ATGAAGAAAAACTTGGGAAA+TGG + chr2_3:13928702-13928721 None:intergenic 30.0%
GGAATACATGAAGAAAAACT+TGG + chr2_3:13928709-13928728 None:intergenic 30.0%
AGAAACCACATTGAACAAAT+TGG - chr2_3:13928951-13928970 Msa0279800:intron 30.0%
AATTTCTAAATCAGCACATG+TGG - chr2_3:13929188-13929207 Msa0279800:intron 30.0%
CAATATGATAAGTGCATCAT+TGG - chr2_3:13929394-13929413 Msa0279800:intron 30.0%
! GAAGCACTTGTAGAATTATT+TGG - chr2_3:13929453-13929472 Msa0279800:intron 30.0%
TGACACTGTTTGAATATAAG+CGG + chr2_3:13929655-13929674 None:intergenic 30.0%
ATATGTATTCTATTGCATCC+TGG - chr2_3:13929717-13929736 Msa0279800:intron 30.0%
! TAATGATGTGCAACAACTTT+TGG + chr2_3:13929821-13929840 None:intergenic 30.0%
ACAAATATGACAGATTACCA+AGG + chr2_3:13929900-13929919 None:intergenic 30.0%
TTTACCATCATTTCCTGTTA+AGG - chr2_3:13930086-13930105 Msa0279800:CDS 30.0%
ATCATTTCCTGTTAAGGAAA+CGG - chr2_3:13930092-13930111 Msa0279800:CDS 30.0%
CAATGTTGTCAAAATGGAAT+TGG - chr2_3:13930123-13930142 Msa0279800:CDS 30.0%
! TTTTCAAATTCTCGGTTGAA+TGG + chr2_3:13930155-13930174 None:intergenic 30.0%
! TTGATCGACTCTAAAAGTAA+AGG + chr2_3:13930210-13930229 None:intergenic 30.0%
ATTAGTGATATGGTTCATTG+TGG - chr2_3:13930304-13930323 Msa0279800:intron 30.0%
!! AATCTTGTTGGTTTGATCTT+CGG - chr2_3:13930350-13930369 Msa0279800:intron 30.0%
TTATTAGTCGGGTATGAATA+TGG - chr2_3:13930393-13930412 Msa0279800:intron 30.0%
TATTAGTCGGGTATGAATAT+GGG - chr2_3:13930394-13930413 Msa0279800:intron 30.0%
!! CAATTTGATTGGTAACGAAT+TGG + chr2_3:13930513-13930532 None:intergenic 30.0%
TATTTCCGTGACAATTTGAT+TGG + chr2_3:13930524-13930543 None:intergenic 30.0%
TAATGCATTTATCAAACACG+TGG - chr2_3:13930807-13930826 Msa0279800:intron 30.0%
ACTGTTCAGACGTATAAATA+TGG - chr2_3:13930840-13930859 Msa0279800:CDS 30.0%
ACGTATTCGACTTTATAGTT+AGG - chr2_3:13930956-13930975 Msa0279800:intron 30.0%
ACTTGCCATATATTATTGCA+TGG - chr2_3:13931020-13931039 Msa0279800:intron 30.0%
!!! TAGGACTGGAAGTTTTTTTT+AGG - chr2_3:13931285-13931304 Msa0279800:intron 30.0%
!!! AGGACTGGAAGTTTTTTTTA+GGG - chr2_3:13931286-13931305 Msa0279800:intron 30.0%
ATAGTTTCAGCATCTTCAAT+TGG + chr2_3:13931449-13931468 None:intergenic 30.0%
!!! AATTTTATTCGAGGCATTGT+CGG - chr2_3:13931578-13931597 Msa0279800:intron 30.0%
! TTTTATCATGTACAGGATTC+GGG - chr2_3:13931618-13931637 Msa0279800:intron 30.0%
! GTTTTCTTTGAGCTTCATTT+CGG + chr2_3:13931679-13931698 None:intergenic 30.0%
AGATGCTACACTTATTAATG+AGG - chr2_3:13931947-13931966 Msa0279800:intron 30.0%
! TATTAATGAGGCACTAAAGA+AGG - chr2_3:13931959-13931978 Msa0279800:intron 30.0%
TTTGAACAAGTGCAACAAAA+TGG - chr2_3:13932198-13932217 Msa0279800:intron 30.0%
! AGCTTTTAACGATGATGAAA+TGG - chr2_3:13932347-13932366 Msa0279800:intron 30.0%
TTTCAATTGTAGGGATTATC+AGG - chr2_3:13932588-13932607 Msa0279800:intron 30.0%
AGTCCAATTGATGAATACAT+TGG - chr2_3:13932612-13932631 Msa0279800:intron 30.0%
TTACCTTGGCTAAATATCTT+TGG + chr2_3:13932674-13932693 None:intergenic 30.0%
TTCATTTGCCAAATCATTCA+AGG + chr2_3:13932814-13932833 None:intergenic 30.0%
! CATTGTTTCTCTTCAGAAAA+TGG + chr2_3:13932899-13932918 None:intergenic 30.0%
ATTCATTTCCCAACAATTCA+AGG + chr2_3:13932977-13932996 None:intergenic 30.0%
TCATCATCTTCTCAAGCTAA+TGG - chr2_3:13927032-13927051 Msa0279800:CDS 35.0%
AATGGTGTTTCCTTAGTTCA+AGG - chr2_3:13927050-13927069 Msa0279800:intron 35.0%
CGTAATCCTAATGCATCAAA+TGG - chr2_3:13927383-13927402 Msa0279800:intron 35.0%
! AAATGGGCTTCTTCATTTGA+AGG - chr2_3:13927400-13927419 Msa0279800:CDS 35.0%
! TCGACTTCAAATTTTGCCTT+TGG - chr2_3:13927436-13927455 Msa0279800:CDS 35.0%
CTTTCAACAGTCAAATCCAA+AGG + chr2_3:13927455-13927474 None:intergenic 35.0%
GACTGTTGAAAGTTCTATTG+AGG - chr2_3:13927463-13927482 Msa0279800:CDS 35.0%
! TTAGACACCAAGTTGAGATT+TGG - chr2_3:13927551-13927570 Msa0279800:CDS 35.0%
GTCTGACCAAAGATTATTTG+AGG + chr2_3:13927804-13927823 None:intergenic 35.0%
AATGCTACATTGGATAAGTG+AGG - chr2_3:13927981-13928000 Msa0279800:intron 35.0%
GATACAACTAAGAATGGCAA+TGG + chr2_3:13928058-13928077 None:intergenic 35.0%
ATCAGCGTAGTAAATAATGG+TGG + chr2_3:13928137-13928156 None:intergenic 35.0%
!! CAAGTGGGTTAACTTAATCA+GGG + chr2_3:13928332-13928351 None:intergenic 35.0%
!! ACAAGTGGGTTAACTTAATC+AGG + chr2_3:13928333-13928352 None:intergenic 35.0%
!! ATCAGCTATAGGCTTTGTTT+AGG - chr2_3:13928462-13928481 Msa0279800:intron 35.0%
! CTCTTTTATTGACAATGCAG+AGG + chr2_3:13928573-13928592 None:intergenic 35.0%
AACCTTCTCATTAATGCATC+TGG - chr2_3:13928608-13928627 Msa0279800:intron 35.0%
AAGTAATGAGTGTGTAATGG+AGG - chr2_3:13928830-13928849 Msa0279800:intron 35.0%
! CTTCTCCAATTTGTTCAATG+TGG + chr2_3:13928959-13928978 None:intergenic 35.0%
! GTTACCTTGATAACCAAGAT+AGG + chr2_3:13929021-13929040 None:intergenic 35.0%
TGGGTTTCTTTATGTGTATG+AGG - chr2_3:13929110-13929129 Msa0279800:intron 35.0%
TATGAGGTTATAGAAGCCTT+AGG - chr2_3:13929126-13929145 Msa0279800:intron 35.0%
ATGAGGTTATAGAAGCCTTA+GGG - chr2_3:13929127-13929146 Msa0279800:intron 35.0%
GAATTATTTGGGAGAACCTA+TGG - chr2_3:13929465-13929484 Msa0279800:intron 35.0%
GTTTCCTTAACAGGAAATGA+TGG + chr2_3:13930093-13930112 None:intergenic 35.0%
ACCTAGCAATGTTGTCAAAA+TGG - chr2_3:13930117-13930136 Msa0279800:CDS 35.0%
!! TCCATTTTGACAACATTGCT+AGG + chr2_3:13930121-13930140 None:intergenic 35.0%
! CCGGAAGATTTTCAAATTCT+CGG + chr2_3:13930163-13930182 None:intergenic 35.0%
CCGAGAATTTGAAAATCTTC+CGG - chr2_3:13930160-13930179 Msa0279800:intron 35.0%
GAATTTGAAAATCTTCCGGT+TGG - chr2_3:13930164-13930183 Msa0279800:intron 35.0%
AGTAAAGGATGGATCAAATG+CGG + chr2_3:13930195-13930214 None:intergenic 35.0%
! TCGACTCTAAAAGTAAAGGA+TGG + chr2_3:13930206-13930225 None:intergenic 35.0%
! AAACCAACAAGATTTTCAGC+TGG + chr2_3:13930344-13930363 None:intergenic 35.0%
CGTTACCAATCAAATTGTCA+CGG - chr2_3:13930516-13930535 Msa0279800:intron 35.0%
GTTCAGACGTATAAATATGG+AGG - chr2_3:13930843-13930862 Msa0279800:CDS 35.0%
ACTATCAAGAATGCATGCAA+AGG - chr2_3:13931464-13931483 Msa0279800:intron 35.0%
AAGCTCAAAGAAAACTTGTG+AGG - chr2_3:13931684-13931703 Msa0279800:intron 35.0%
TGAACTTTCAGGAAACTTTG+AGG - chr2_3:13931757-13931776 Msa0279800:intron 35.0%
ATCCATTGTCCAATGACTAA+TGG + chr2_3:13931916-13931935 None:intergenic 35.0%
TAGAAATACTGAAGAGCTTC+TGG - chr2_3:13932022-13932041 Msa0279800:intron 35.0%
AATATCACCAGTAGTTTGAG+AGG + chr2_3:13932102-13932121 None:intergenic 35.0%
! ACTATTTCTCATGCAGTTGT+TGG - chr2_3:13932227-13932246 Msa0279800:intron 35.0%
ATAAGCACTTACAAGTACGA+TGG - chr2_3:13932258-13932277 Msa0279800:intron 35.0%
AGATGAGTTTGATGAGAATG+TGG - chr2_3:13932281-13932300 Msa0279800:intron 35.0%
GTATGGCACAACCATTAATA+AGG - chr2_3:13932434-13932453 Msa0279800:CDS 35.0%
GCTCCAATGTATTCATCAAT+TGG + chr2_3:13932618-13932637 None:intergenic 35.0%
!! TTTTGTGATGTTGGTTACCT+TGG + chr2_3:13932688-13932707 None:intergenic 35.0%
AGAGAAAAGAACATGAAGCG+TGG + chr2_3:13926900-13926919 None:intergenic 40.0%
TGAAGAAGAGAATGCTCTTC+TGG + chr2_3:13927012-13927031 None:intergenic 40.0%
GACATTGGACACAATTGTTG+CGG - chr2_3:13927245-13927264 Msa0279800:intron 40.0%
AGAAGCCCATTTGATGCATT+AGG + chr2_3:13927392-13927411 None:intergenic 40.0%
! CAGTAATCTGGAATTCGTCT+GGG + chr2_3:13927838-13927857 None:intergenic 40.0%
ATATGTCAGCTACTAGTTGG+AGG + chr2_3:13928015-13928034 None:intergenic 40.0%
TCCAACTAGTAGCTGACATA+TGG - chr2_3:13928014-13928033 Msa0279800:intron 40.0%
TCCATATGTCAGCTACTAGT+TGG + chr2_3:13928018-13928037 None:intergenic 40.0%
GAATGGCAATGGTTATAGTG+TGG + chr2_3:13928047-13928066 None:intergenic 40.0%
TTGTACCAAATAGCACATCG+CGG - chr2_3:13928255-13928274 Msa0279800:intron 40.0%
CCATTTCGAAACTGACAAGT+GGG + chr2_3:13928347-13928366 None:intergenic 40.0%
CCACTTGTCAGTTTCGAAAT+GGG - chr2_3:13928345-13928364 Msa0279800:intron 40.0%
TGCCAGATGCATTAATGAGA+AGG + chr2_3:13928613-13928632 None:intergenic 40.0%
TCTTATGAGGTTAATGCCGT+CGG - chr2_3:13928994-13929013 Msa0279800:intron 40.0%
TCTATTGGCGATAATCGTCT+CGG - chr2_3:13929289-13929308 Msa0279800:intron 40.0%
! CTTTTGGACTGAGTACTCTT+TGG + chr2_3:13929805-13929824 None:intergenic 40.0%
AATGTCAAGAGCCATGACAA+TGG - chr2_3:13929843-13929862 Msa0279800:intron 40.0%
CAAAGAACTTGCCATTGTCA+TGG + chr2_3:13929857-13929876 None:intergenic 40.0%
ACAATGGCAAGTTCTTTGCT+TGG - chr2_3:13929859-13929878 Msa0279800:intron 40.0%
CAATGGCAAGTTCTTTGCTT+GGG - chr2_3:13929860-13929879 Msa0279800:intron 40.0%
TAGGTAACCGTTTCCTTAAC+AGG + chr2_3:13930102-13930121 None:intergenic 40.0%
!!! CTTTTAGAGTCGATCAAACC+CGG - chr2_3:13930213-13930232 Msa0279800:intron 40.0%
GAACCAGCTGAAAATCTTGT+TGG - chr2_3:13930338-13930357 Msa0279800:intron 40.0%
CATTCATCTTGTAAGCTGTG+AGG + chr2_3:13930578-13930597 None:intergenic 40.0%
AAGCTAGCCATATTTGTACG+AGG - chr2_3:13930665-13930684 Msa0279800:intron 40.0%
AGATCGTAGGCTCTATCAAT+CGG + chr2_3:13930916-13930935 None:intergenic 40.0%
! TTCATTTCGGTGTGCTAGTA+CGG + chr2_3:13931666-13931685 None:intergenic 40.0%
TCAAAGAAAACTTGTGAGGC+TGG - chr2_3:13931688-13931707 Msa0279800:intron 40.0%
CAGCTCAAAACTGAACTTTC+AGG - chr2_3:13931746-13931765 Msa0279800:intron 40.0%
TAATGGCTCTCTGATTTCCA+TGG + chr2_3:13931899-13931918 None:intergenic 40.0%
ATCAGAGAGCCATTAGTCAT+TGG - chr2_3:13931904-13931923 Msa0279800:intron 40.0%
AGCCATTAGTCATTGGACAA+TGG - chr2_3:13931911-13931930 Msa0279800:intron 40.0%
GGCAATGCTTGTAAAGAGAA+TGG + chr2_3:13932064-13932083 None:intergenic 40.0%
CAGCCAAAGATATTTAGCCA+AGG - chr2_3:13932668-13932687 Msa0279800:intron 40.0%
ATCTCACGCCTTGAATGATT+TGG - chr2_3:13932803-13932822 Msa0279800:CDS 40.0%
CCTAGCAACAGAATCATGAA+TGG + chr2_3:13932925-13932944 None:intergenic 40.0%
CCATTCATGATTCTGTTGCT+AGG - chr2_3:13932922-13932941 Msa0279800:CDS 40.0%
ATTCTGTTGCTAGGAAGACA+TGG - chr2_3:13932931-13932950 Msa0279800:exon 40.0%
TTCTGTTGCTAGGAAGACAT+GGG - chr2_3:13932932-13932951 Msa0279800:exon 40.0%
!! ATGGAAGTGTTAAGAGTGGG+GGG + chr2_3:13926957-13926976 None:intergenic 45.0%
!! CATGGAAGTGTTAAGAGTGG+GGG + chr2_3:13926958-13926977 None:intergenic 45.0%
!! CCATGGAAGTGTTAAGAGTG+GGG + chr2_3:13926959-13926978 None:intergenic 45.0%
!! GCCATGGAAGTGTTAAGAGT+GGG + chr2_3:13926960-13926979 None:intergenic 45.0%
!! AGCCATGGAAGTGTTAAGAG+TGG + chr2_3:13926961-13926980 None:intergenic 45.0%
TCTGGAAGCTCCTTGAACTA+AGG + chr2_3:13927063-13927082 None:intergenic 45.0%
TTAGTTCAAGGAGCTTCCAG+AGG - chr2_3:13927062-13927081 Msa0279800:intron 45.0%
! GAATTCAAGACCGATTCCTC+TGG + chr2_3:13927081-13927100 None:intergenic 45.0%
CACTGACACAGACATAGACA+CGG - chr2_3:13927223-13927242 Msa0279800:CDS 45.0%
ACAGACATAGACACGGACAT+TGG - chr2_3:13927230-13927249 Msa0279800:CDS 45.0%
AGGGTCACCAAATCTCAACT+TGG + chr2_3:13927561-13927580 None:intergenic 45.0%
! GCAGTAATCTGGAATTCGTC+TGG + chr2_3:13927839-13927858 None:intergenic 45.0%
! TTGTTCCGCGATGTGCTATT+TGG + chr2_3:13928263-13928282 None:intergenic 45.0%
CCCACTTGTCAGTTTCGAAA+TGG - chr2_3:13928344-13928363 Msa0279800:intron 45.0%
CCCATTTCGAAACTGACAAG+TGG + chr2_3:13928348-13928367 None:intergenic 45.0%
TTCGAAATGGGAACGTGTCT+AGG - chr2_3:13928357-13928376 Msa0279800:intron 45.0%
AAATGGGAACGTGTCTAGGA+AGG - chr2_3:13928361-13928380 Msa0279800:intron 45.0%
!! GCGGCTTTTTCTATCAAGAC+TGG - chr2_3:13928397-13928416 Msa0279800:intron 45.0%
!!! TGTTTTTAGTGCGTGCAAGC+GGG + chr2_3:13928734-13928753 None:intergenic 45.0%
!!! CTGTTTTTAGTGCGTGCAAG+CGG + chr2_3:13928735-13928754 None:intergenic 45.0%
GCAGCAGATTTGTGAGAACA+CGG - chr2_3:13928803-13928822 Msa0279800:intron 45.0%
GATAACCAAGATAGGACCGA+CGG + chr2_3:13929013-13929032 None:intergenic 45.0%
CGGTCCTATCTTGGTTATCA+AGG - chr2_3:13929014-13929033 Msa0279800:intron 45.0%
GACTCAAACTACATGCCCTA+AGG + chr2_3:13929145-13929164 None:intergenic 45.0%
ATGTGGCCTCTTCTTAAAGC+TGG - chr2_3:13929205-13929224 Msa0279800:intron 45.0%
TTAAAGCTGGAGGTGGCATT+GGG - chr2_3:13929218-13929237 Msa0279800:intron 45.0%
!! TTGTGGCTAGTTTGAGTGCA+AGG - chr2_3:13929260-13929279 Msa0279800:intron 45.0%
!! TGTGGCTAGTTTGAGTGCAA+GGG - chr2_3:13929261-13929280 Msa0279800:intron 45.0%
AGTGCAAGGGTTGCATCTAT+TGG - chr2_3:13929274-13929293 Msa0279800:intron 45.0%
CTATTGGCGATAATCGTCTC+GGG - chr2_3:13929290-13929309 Msa0279800:intron 45.0%
TATTGGCGATAATCGTCTCG+GGG - chr2_3:13929291-13929310 Msa0279800:intron 45.0%
AGTGTCAAAGACGATCTCGT+TGG - chr2_3:13929668-13929687 Msa0279800:intron 45.0%
AGATCTGTGTCAACTGTACC+AGG + chr2_3:13929738-13929757 None:intergenic 45.0%
GGGATGGTCAAGAAATTCCT+TGG - chr2_3:13929880-13929899 Msa0279800:intron 45.0%
TCAAATGCGGTTGAACCAAC+CGG + chr2_3:13930182-13930201 None:intergenic 45.0%
TTCAAACTGATTGTCCCACC+GGG + chr2_3:13930234-13930253 None:intergenic 45.0%
GTTCAAACTGATTGTCCCAC+CGG + chr2_3:13930235-13930254 None:intergenic 45.0%
CTAGCCATATTTGTACGAGG+AGG - chr2_3:13930668-13930687 Msa0279800:intron 45.0%
TTGGCCTCCTCGTACAAATA+TGG + chr2_3:13930675-13930694 None:intergenic 45.0%
GTGTGATACGACTAGATCGT+AGG + chr2_3:13930929-13930948 None:intergenic 45.0%
AGTGTAGCATCTCTTTCAGC+TGG + chr2_3:13931939-13931958 None:intergenic 45.0%
GAGAGGCAACATCTTCTTCA+AGG + chr2_3:13932085-13932104 None:intergenic 45.0%
GATGTTGCCTCTCAAACTAC+TGG - chr2_3:13932092-13932111 Msa0279800:intron 45.0%
TCGTGCAGAGAAGGACTTAA+AGG - chr2_3:13932863-13932882 Msa0279800:CDS 45.0%
TCTGTTGCTAGGAAGACATG+GGG - chr2_3:13932933-13932952 Msa0279800:exon 45.0%
CCCCACTCTTAACACTTCCA+TGG - chr2_3:13926956-13926975 Msa0279800:CDS 50.0%
TGGCTAGTGATAGAAGCCGA+GGG + chr2_3:13926992-13927011 None:intergenic 50.0%
CAAGGAGCTTCCAGAGGAAT+CGG - chr2_3:13927068-13927087 Msa0279800:intron 50.0%
GACACAATTGTTGCGGACAC+CGG - chr2_3:13927252-13927271 Msa0279800:intron 50.0%
ATTACTGCTGCCCTCTTCCT+TGG - chr2_3:13927851-13927870 Msa0279800:CDS 50.0%
ATCTTAACCTTCCGGCACCA+AGG + chr2_3:13927871-13927890 None:intergenic 50.0%
!! ATACCTGAAGTGCTGCAACC+AGG - chr2_3:13928641-13928660 Msa0279800:intron 50.0%
TTACCTGGTTGCAGCACTTC+AGG + chr2_3:13928647-13928666 None:intergenic 50.0%
!!! GTTTTTAGTGCGTGCAAGCG+GGG + chr2_3:13928733-13928752 None:intergenic 50.0%
TAATGCCGTCGGTCCTATCT+TGG - chr2_3:13929005-13929024 Msa0279800:intron 50.0%
TGGCCTCTTCTTAAAGCTGG+AGG - chr2_3:13929208-13929227 Msa0279800:intron 50.0%
!! CCACCTCCAGCTTTAAGAAG+AGG + chr2_3:13929214-13929233 None:intergenic 50.0%
CCTCTTCTTAAAGCTGGAGG+TGG - chr2_3:13929211-13929230 Msa0279800:intron 50.0%
CTTAAAGCTGGAGGTGGCAT+TGG - chr2_3:13929217-13929236 Msa0279800:intron 50.0%
GGAAAGAAGTGGTGCAGTTG+TGG - chr2_3:13929243-13929262 Msa0279800:intron 50.0%
ATTGGCGATAATCGTCTCGG+GGG - chr2_3:13929292-13929311 Msa0279800:intron 50.0%
! TCGGGGGTTGGCATTCATAT+CGG - chr2_3:13929308-13929327 Msa0279800:intron 50.0%
GTTGGAGTTTGCGAGGAAGA+AGG - chr2_3:13929686-13929705 Msa0279800:intron 50.0%
GGCAAGTTCTTTGCTTGGGA+TGG - chr2_3:13929864-13929883 Msa0279800:intron 50.0%
TTAGAGTCGATCAAACCCGG+TGG - chr2_3:13930216-13930235 Msa0279800:intron 50.0%
TAGAGTCGATCAAACCCGGT+GGG - chr2_3:13930217-13930236 Msa0279800:intron 50.0%
GGGACAATCAGTTTGAACCG+TGG - chr2_3:13930237-13930256 Msa0279800:intron 50.0%
GCTGTCATCGATGCAACGAA+CGG + chr2_3:13932652-13932671 None:intergenic 50.0%
TATCGTCACTCGTGCAGAGA+AGG - chr2_3:13932854-13932873 Msa0279800:CDS 50.0%
! GAAGTGTTAAGAGTGGGGGG+TGG + chr2_3:13926954-13926973 None:intergenic 55.0%
GGCTAGTGATAGAAGCCGAG+GGG + chr2_3:13926991-13927010 None:intergenic 55.0%
CTGGCTAGTGATAGAAGCCG+AGG + chr2_3:13926993-13927012 None:intergenic 55.0%
GGAAGAGGGCAGCAGTAATC+TGG + chr2_3:13927850-13927869 None:intergenic 55.0%
! GGCATTGGGACGGAAAGAAG+TGG - chr2_3:13929232-13929251 Msa0279800:intron 55.0%
CGATCTCGTTGGAGTTTGCG+AGG - chr2_3:13929679-13929698 Msa0279800:intron 55.0%
CCATGGCTTCACGTTCCCCT+CGG - chr2_3:13926973-13926992 Msa0279800:CDS 60.0%
TCTATACCACCGGCACGTGC+CGG + chr2_3:13927274-13927293 None:intergenic 60.0%
CCTTCCGGCACCAAGGAAGA+GGG + chr2_3:13927864-13927883 None:intergenic 60.0%
ACCTTCCGGCACCAAGGAAG+AGG + chr2_3:13927865-13927884 None:intergenic 60.0%
TTTAGTGCGTGCAAGCGGGG+TGG + chr2_3:13928730-13928749 None:intergenic 60.0%
! AGCTGGAGGTGGCATTGGGA+CGG - chr2_3:13929222-13929241 Msa0279800:intron 60.0%
GCGATAATCGTCTCGGGGGT+TGG - chr2_3:13929296-13929315 Msa0279800:intron 60.0%
CCGAGGGGAACGTGAAGCCA+TGG + chr2_3:13926976-13926995 None:intergenic 65.0%
! GCTGCCCTCTTCCTTGGTGC+CGG - chr2_3:13927857-13927876 Msa0279800:CDS 65.0%
!! CCCTCTTCCTTGGTGCCGGA+AGG - chr2_3:13927861-13927880 Msa0279800:CDS 65.0%
TTGCGGACACCGGCACGTGC+CGG - chr2_3:13927262-13927281 Msa0279800:intron 70.0%
! CGGACACCGGCACGTGCCGG+TGG - chr2_3:13927265-13927284 Msa0279800:intron 80.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 13926852 13932998 13926852 ID=Msa0279800;Name=Msa0279800
chr2_3 mRNA 13926852 13932998 13926852 ID=Msa0279800-mRNA-1;Parent=Msa0279800;Name=Msa0279800-mRNA-1;_AED=0.25;_eAED=0.25;_QI=54|0.5|0.36|1|0.8|0.81|11|0|571
chr2_3 exon 13926852 13927052 13926852 ID=Msa0279800-mRNA-1:exon:5916;Parent=Msa0279800-mRNA-1
chr2_3 exon 13927161 13927250 13927161 ID=Msa0279800-mRNA-1:exon:5915;Parent=Msa0279800-mRNA-1
chr2_3 exon 13927395 13927607 13927395 ID=Msa0279800-mRNA-1:exon:5914;Parent=Msa0279800-mRNA-1
chr2_3 exon 13927723 13927941 13927723 ID=Msa0279800-mRNA-1:exon:5913;Parent=Msa0279800-mRNA-1
chr2_3 exon 13928072 13928217 13928072 ID=Msa0279800-mRNA-1:exon:5912;Parent=Msa0279800-mRNA-1
chr2_3 exon 13929949 13930142 13929949 ID=Msa0279800-mRNA-1:exon:5911;Parent=Msa0279800-mRNA-1
chr2_3 exon 13930521 13930648 13930521 ID=Msa0279800-mRNA-1:exon:5910;Parent=Msa0279800-mRNA-1
chr2_3 exon 13930815 13930897 13930815 ID=Msa0279800-mRNA-1:exon:5909;Parent=Msa0279800-mRNA-1
chr2_3 exon 13931188 13931281 13931188 ID=Msa0279800-mRNA-1:exon:5908;Parent=Msa0279800-mRNA-1
chr2_3 exon 13932366 13932518 13932366 ID=Msa0279800-mRNA-1:exon:5907;Parent=Msa0279800-mRNA-1
chr2_3 exon 13932750 13932998 13932750 ID=Msa0279800-mRNA-1:exon:5906;Parent=Msa0279800-mRNA-1
chr2_3 five_prime_UTR 13932945 13932998 13932945 ID=Msa0279800-mRNA-1:five_prime_utr;Parent=Msa0279800-mRNA-1
chr2_3 CDS 13932750 13932944 13932750 ID=Msa0279800-mRNA-1:cds;Parent=Msa0279800-mRNA-1
chr2_3 CDS 13932366 13932518 13932366 ID=Msa0279800-mRNA-1:cds;Parent=Msa0279800-mRNA-1
chr2_3 CDS 13931188 13931281 13931188 ID=Msa0279800-mRNA-1:cds;Parent=Msa0279800-mRNA-1
chr2_3 CDS 13930815 13930897 13930815 ID=Msa0279800-mRNA-1:cds;Parent=Msa0279800-mRNA-1
chr2_3 CDS 13930521 13930648 13930521 ID=Msa0279800-mRNA-1:cds;Parent=Msa0279800-mRNA-1
chr2_3 CDS 13929949 13930142 13929949 ID=Msa0279800-mRNA-1:cds;Parent=Msa0279800-mRNA-1
chr2_3 CDS 13928072 13928217 13928072 ID=Msa0279800-mRNA-1:cds;Parent=Msa0279800-mRNA-1
chr2_3 CDS 13927723 13927941 13927723 ID=Msa0279800-mRNA-1:cds;Parent=Msa0279800-mRNA-1
chr2_3 CDS 13927395 13927607 13927395 ID=Msa0279800-mRNA-1:cds;Parent=Msa0279800-mRNA-1
chr2_3 CDS 13927161 13927250 13927161 ID=Msa0279800-mRNA-1:cds;Parent=Msa0279800-mRNA-1
chr2_3 CDS 13926852 13927052 13926852 ID=Msa0279800-mRNA-1:cds;Parent=Msa0279800-mRNA-1
Gene Sequence

>Msa0279800

ATGTTCTTTTCTCTTTCATATGATTCTCTATTGCTATCGTTATTGCCACCCCCCACTCTTAACACTTCCATGGCTTCACGTTCCCCTCGGCTTCTATCACTAGCCAGAAGAGCATTCTCTTCTTCATCATCATCTTCTCAAGCTAATGGTGTTTCCTTAGTTCAAGGAGCTTCCAGAGGAATCGGTCTTGAATTCGTGAAACAATTGTTAGAGAAGAATGATAAAGAGCATGTTGTTGCTACTTGCCGTAATCCTAATGCATCAAATGGGCTTCTTCATTTGAAGGATAGATTTGATGATCGACTTCAAATTTTGCCTTTGGATTTGACTGTTGAAAGTTCTATTGAGGCCTCTGCATTGTCAATAAAAGAGACATATGGCCATCTAAACCTTCTCATTAATGCATCTGGCATTCTTTCAATACCTGAAGTGCTGCAACCAGAAACCACATTGAACAAATTGGAGAAGTCATCTTTAATGCTTTCTTATGAGGTTAATGCCGTCGGTCCTATCTTGGTTATCAAGCACATGTGGCCTCTTCTTAAAGCTGGAGGTGGCATTGGGACGGAAAGAAGTGGTGCAGTTGTGGCTAGTTTGAGTGCAAGGGTTGCATCTATTGGCGATAATCGTCTCGGGGGTTGGCATTCATATCGGATCCAATCATATGTATTCTATTGCATCCTGGTACAGTTGACACAGATCTTTCTAAGCCATTTCAAAAAAATATTGCTAAAGAAAAGCTCTTCACCAAAGAGTACTCAGTCCAAAAGTTGTTGCACATCATTAACAATGTCAAGAGCCATGACAATGGCAAGTTCTTTGCTTGGGATGGTCAAGAAATTCCTTGGATTCGGGACAAATGAGACTGCGATTATATCCGTACTAGCACACCGAAATGAAGCTCAAAGAAAACTTGTGAGGCTGGCTTATCAAGAAATTTATCATCAGGATCTTATAGAACAGCTCAAAACTGAACTTTCAGGAAACTTTGAGAGAGCCATTAGTCATTGGACAATGGATCCAGCTGAAAGAGATGCTACACTTATTAATGAGGCACTAAAGAAGGCAACACCAGATTACAAAGTGATTATTGAGATTGTTTGCACTAGAAATACTGAAGAGCTTCTGGCTTTAAAGCGTTCATACCATTCTCTTTACAAGCATTGCCTTGAAGAAGATGTTGCCTCTCAAACTACTGGTGATATTCGCAAATTGTTGGTTGCAGTTATAAGCACTTACAAGTACGATGGAGATGAGTTTGATGAGAATGTGGCTCATTCTGAAGCAACCATACTTCATCAATTGATTGAAAAGAAAGCTTTTAACGATGATGAAATGGTTAGAATTTTAAGCACAAGAAGTAAGAAGCAGCTATGTGTGACTTTCAATATCTTTAAGGACTTGTATGGCACAACCATTAATAAGGGATTATCAGGTAGTCCAATTGATGAATACATTGGAGCACTGCGTACTACCGTTCGTTGCATCGATGACAGCCAAAGATATTTAGCCAAGGTGTTATCTCACGCCTTGAATGATTTGGCAAATGAAGAAAATGCTTTGAGTCGTGTTATCGTCACTCGTGCAGAGAAGGACTTAAAGGAAATCAATGACCATTTTCTGAAGAGAAACAATGTCACCATTCATGATTCTGTTGCTAGGAAGACATGGGGAAATTACAAGATTTTTATCCTTGAATTGTTGGGAAATGAATAA

Protein sequence

>Msa0279800

MFFSLSYDSLLLSLLPPPTLNTSMASRSPRLLSLARRAFSSSSSSSQANGVSLVQGASRGIGLEFVKQLLEKNDKEHVVATCRNPNASNGLLHLKDRFDDRLQILPLDLTVESSIEASALSIKETYGHLNLLINASGILSIPEVLQPETTLNKLEKSSLMLSYEVNAVGPILVIKHMWPLLKAGGGIGTERSGAVVASLSARVASIGDNRLGGWHSYRIQSYVFYCILVQLTQIFLSHFKKILLKKSSSPKSTQSKSCCTSLTMSRAMTMASSLLGMVKKFLGFGTNETAIISVLAHRNEAQRKLVRLAYQEIYHQDLIEQLKTELSGNFERAISHWTMDPAERDATLINEALKKATPDYKVIIEIVCTRNTEELLALKRSYHSLYKHCLEEDVASQTTGDIRKLLVAVISTYKYDGDEFDENVAHSEATILHQLIEKKAFNDDEMVRILSTRSKKQLCVTFNIFKDLYGTTINKGLSGSPIDEYIGALRTTVRCIDDSQRYLAKVLSHALNDLANEENALSRVIVTRAEKDLKEINDHFLKRNNVTIHDSVARKTWGNYKIFILELLGNE*