Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264290 | XP_013465392.1 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 784 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264290 | sp|P30171|ACT11_SOLTU | 97.347 | 377 | 10 | 0 | 1 | 377 | 1 | 377 | 0.0 | 771 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264290 | A0A072VCE0 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 784 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004180 | Msa0264290 | 0.811939 | 5.447871e-51 | -8.615850e-47 |
| Msa0028410 | Msa0264290 | 0.803524 | 3.346444e-49 | -8.615850e-47 |
| Msa0047660 | Msa0264290 | 0.809462 | 1.869757e-50 | -8.615850e-47 |
| Msa0075080 | Msa0264290 | 0.809687 | 1.673296e-50 | -8.615850e-47 |
| Msa0078160 | Msa0264290 | 0.801193 | 1.010454e-48 | -8.615850e-47 |
| Msa0078170 | Msa0264290 | 0.800175 | 1.629969e-48 | -8.615850e-47 |
| Msa0085470 | Msa0264290 | 0.803080 | 4.135533e-49 | -8.615850e-47 |
| Msa0117650 | Msa0264290 | -0.801486 | 8.800648e-49 | -8.615850e-47 |
| Msa0122930 | Msa0264290 | 0.812353 | 4.424953e-51 | -8.615850e-47 |
| Msa0129820 | Msa0264290 | 0.819786 | 9.672872e-53 | -8.615850e-47 |
| Msa0145990 | Msa0264290 | 0.803606 | 3.217691e-49 | -8.615850e-47 |
| Msa0147070 | Msa0264290 | 0.801474 | 8.854212e-49 | -8.615850e-47 |
| Msa0162170 | Msa0264290 | 0.814134 | 1.797846e-51 | -8.615850e-47 |
| Msa0164310 | Msa0264290 | 0.816737 | 4.739673e-52 | -8.615850e-47 |
| Msa0167570 | Msa0264290 | 0.809912 | 1.496655e-50 | -8.615850e-47 |
| Msa0168470 | Msa0264290 | 0.808489 | 3.020448e-50 | -8.615850e-47 |
| Msa0188670 | Msa0264290 | 0.800711 | 1.267852e-48 | -8.615850e-47 |
| Msa0213590 | Msa0264290 | 0.824540 | 7.637160e-54 | -8.615850e-47 |
| Msa0222850 | Msa0264290 | 0.981650 | 4.149485e-153 | -8.615850e-47 |
| Msa0264290 | Msa0279800 | 0.818063 | 2.382797e-52 | -8.615850e-47 |
| Msa0264290 | Msa0302280 | 0.960979 | 3.575902e-119 | -8.615850e-47 |
| Msa0264290 | Msa0307820 | 0.804486 | 2.111058e-49 | -8.615850e-47 |
| Msa0264290 | Msa0339450 | 0.997905 | 1.084386e-251 | -8.615850e-47 |
| Msa0264290 | Msa0355990 | 0.804615 | 1.984211e-49 | -8.615850e-47 |
| Msa0264290 | Msa0386230 | 0.805517 | 1.285003e-49 | -8.615850e-47 |
| Msa0264290 | Msa0433090 | -0.807904 | 4.024523e-50 | -8.615850e-47 |
| Msa0264290 | Msa0474630 | 0.808214 | 3.457505e-50 | -8.615850e-47 |
| Msa0264290 | Msa0474660 | 0.800029 | 1.745616e-48 | -8.615850e-47 |
| Msa0264290 | Msa0484590 | 0.819029 | 1.438942e-52 | -8.615850e-47 |
| Msa0264290 | Msa0490740 | 0.823709 | 1.196718e-53 | -8.615850e-47 |
| Msa0264290 | Msa0506700 | 0.802533 | 5.362002e-49 | -8.615850e-47 |
| Msa0264290 | Msa0524710 | -0.818744 | 1.670890e-52 | -8.615850e-47 |
| Msa0264290 | Msa0597820 | -0.811995 | 5.296832e-51 | -8.615850e-47 |
| Msa0264290 | Msa0619450 | 0.816990 | 4.159418e-52 | -8.615850e-47 |
| Msa0264290 | Msa0619530 | 0.816024 | 6.842936e-52 | -8.615850e-47 |
| Msa0264290 | Msa0637590 | -0.809183 | 2.146463e-50 | -8.615850e-47 |
| Msa0264290 | Msa0659580 | 0.818542 | 1.856135e-52 | -8.615850e-47 |
| Msa0264290 | Msa0691320 | 0.800197 | 1.613722e-48 | -8.615850e-47 |
| Msa0264290 | Msa0699200 | 0.802262 | 6.099840e-49 | -8.615850e-47 |
| Msa0264290 | Msa0985980 | 0.809909 | 1.498631e-50 | -8.615850e-47 |
| Msa0264290 | Msa1002550 | 0.802023 | 6.829656e-49 | -8.615850e-47 |
| Msa0264290 | Msa1102410 | 0.812590 | 3.927463e-51 | -8.615850e-47 |
| Msa0264290 | Msa1130150 | 0.803810 | 2.918083e-49 | -8.615850e-47 |
| Msa0264290 | Msa1137750 | -0.803564 | 3.283184e-49 | -8.615850e-47 |
| Msa0264290 | Msa1197740 | 0.802034 | 6.792770e-49 | -8.615850e-47 |
| Msa0264290 | Msa1215540 | 0.803709 | 3.063463e-49 | -8.615850e-47 |
| Msa0264290 | Msa1297490 | 0.805316 | 1.415820e-49 | -8.615850e-47 |
| Msa0264290 | Msa1297550 | 0.801699 | 7.961091e-49 | -8.615850e-47 |
| Msa0264290 | Msa1325260 | 0.808231 | 3.427736e-50 | -8.615850e-47 |
| Msa0264290 | Msa1390200 | -0.813278 | 2.775809e-51 | -8.615850e-47 |
| Msa0264290 | Msa1395200 | 0.803532 | 3.333681e-49 | -8.615850e-47 |
| Msa0264290 | Msa1405040 | 0.800769 | 1.233717e-48 | -8.615850e-47 |
| Msa0264290 | Msa1437590 | -0.818287 | 2.121080e-52 | -8.615850e-47 |
| Msa0264290 | Msa1462700 | 0.802929 | 4.442176e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264290 | MtrunA17_Chr2g0328091 | 100.000 | 377 | 0 | 0 | 1 | 377 | 1 | 377 | 0.0 | 784 |
| Msa0264290 | MtrunA17_Chr1g0175391 | 98.674 | 377 | 5 | 0 | 1 | 377 | 1 | 377 | 0.0 | 776 |
| Msa0264290 | MtrunA17_Chr6g0448881 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 768 |
| Msa0264290 | MtrunA17_Chr7g0223901 | 97.082 | 377 | 11 | 0 | 1 | 377 | 1 | 377 | 0.0 | 768 |
| Msa0264290 | MtrunA17_Chr7g0258721 | 96.021 | 377 | 15 | 0 | 1 | 377 | 1 | 377 | 0.0 | 765 |
| Msa0264290 | MtrunA17_Chr3g0129641 | 94.960 | 377 | 19 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0264290 | MtrunA17_Chr2g0278591 | 93.634 | 377 | 24 | 0 | 1 | 377 | 1 | 377 | 0.0 | 752 |
| Msa0264290 | MtrunA17_Chr7g0224401 | 42.480 | 379 | 204 | 3 | 10 | 374 | 7 | 385 | 1.11e-118 | 349 |
| Msa0264290 | MtrunA17_Chr5g0427591 | 37.220 | 446 | 207 | 10 | 1 | 376 | 1 | 443 | 8.46e-94 | 287 |
| Msa0264290 | MtrunA17_Chr8g0361001 | 37.220 | 446 | 207 | 10 | 1 | 376 | 1 | 443 | 1.11e-93 | 287 |
| Msa0264290 | MtrunA17_Chr8g0381261 | 34.550 | 411 | 219 | 8 | 10 | 372 | 10 | 418 | 4.30e-72 | 231 |
| Msa0264290 | MtrunA17_Chr3g0089031 | 37.105 | 380 | 213 | 9 | 7 | 377 | 1 | 363 | 8.35e-68 | 218 |
| Msa0264290 | MtrunA17_Chr2g0305361 | 27.650 | 434 | 248 | 7 | 8 | 377 | 6 | 437 | 2.57e-56 | 190 |
| Msa0264290 | MtrunA17_Chr3g0080021 | 30.303 | 297 | 183 | 9 | 91 | 371 | 179 | 467 | 1.66e-40 | 149 |
| Msa0264290 | MtrunA17_Chr8g0369101 | 31.058 | 293 | 175 | 10 | 91 | 366 | 187 | 469 | 6.18e-36 | 136 |
| Msa0264290 | MtrunA17_Chr3g0111971 | 28.968 | 252 | 160 | 7 | 9 | 245 | 21 | 268 | 7.47e-22 | 97.4 |
| Msa0264290 | MtrunA17_Chr3g0111971 | 33.607 | 122 | 78 | 2 | 250 | 368 | 586 | 707 | 3.60e-16 | 80.1 |
| Msa0264290 | MtrunA17_Chr8g0336071 | 40.000 | 95 | 57 | 0 | 105 | 199 | 1 | 95 | 3.19e-19 | 82.0 |
| Msa0264290 | MtrunA17_Chr8g0336061 | 43.478 | 92 | 39 | 2 | 241 | 319 | 12 | 103 | 4.07e-19 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0264290 | AT3G12110.1 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 765 |
| Msa0264290 | AT3G53750.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0264290 | AT3G53750.2 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0264290 | AT2G37620.1 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0264290 | AT2G37620.3 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0264290 | AT2G37620.2 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0264290 | AT2G37620.4 | 95.756 | 377 | 16 | 0 | 1 | 377 | 1 | 377 | 0.0 | 763 |
| Msa0264290 | AT5G59370.2 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0264290 | AT5G59370.1 | 96.817 | 377 | 12 | 0 | 1 | 377 | 1 | 377 | 0.0 | 762 |
| Msa0264290 | AT3G46520.2 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0264290 | AT3G46520.1 | 96.552 | 377 | 13 | 0 | 1 | 377 | 1 | 377 | 0.0 | 761 |
| Msa0264290 | AT5G09810.1 | 94.960 | 377 | 19 | 0 | 1 | 377 | 1 | 377 | 0.0 | 759 |
| Msa0264290 | AT1G49240.1 | 92.573 | 377 | 28 | 0 | 1 | 377 | 1 | 377 | 0.0 | 745 |
| Msa0264290 | AT3G18780.2 | 92.308 | 377 | 29 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| Msa0264290 | AT3G18780.3 | 92.308 | 377 | 29 | 0 | 1 | 377 | 1 | 377 | 0.0 | 744 |
| Msa0264290 | AT3G18780.1 | 92.201 | 359 | 28 | 0 | 1 | 359 | 1 | 359 | 0.0 | 703 |
| Msa0264290 | AT2G42100.1 | 83.967 | 368 | 59 | 0 | 10 | 377 | 11 | 378 | 0.0 | 673 |
| Msa0264290 | AT2G42090.1 | 70.000 | 370 | 106 | 1 | 7 | 376 | 1 | 365 | 0.0 | 564 |
| Msa0264290 | AT2G42170.1 | 77.108 | 332 | 73 | 1 | 46 | 377 | 1 | 329 | 0.0 | 556 |
| Msa0264290 | AT2G42170.3 | 77.108 | 332 | 73 | 1 | 46 | 377 | 1 | 329 | 0.0 | 556 |
| Msa0264290 | AT2G42170.4 | 76.923 | 312 | 69 | 1 | 46 | 357 | 1 | 309 | 0.0 | 518 |
| Msa0264290 | AT2G42170.2 | 76.923 | 312 | 69 | 1 | 46 | 357 | 1 | 309 | 0.0 | 518 |
| Msa0264290 | AT2G42170.5 | 76.991 | 226 | 49 | 1 | 152 | 377 | 9 | 231 | 2.26e-130 | 373 |
| Msa0264290 | AT3G27000.1 | 43.536 | 379 | 200 | 4 | 10 | 374 | 7 | 385 | 5.07e-121 | 355 |
| Msa0264290 | AT1G18450.1 | 37.472 | 443 | 207 | 9 | 1 | 376 | 1 | 440 | 1.55e-95 | 292 |
| Msa0264290 | AT1G13180.1 | 34.223 | 412 | 219 | 9 | 10 | 372 | 9 | 417 | 2.85e-72 | 232 |
| Msa0264290 | AT3G60830.1 | 37.467 | 379 | 213 | 9 | 7 | 377 | 1 | 363 | 6.00e-67 | 216 |
| Msa0264290 | AT3G33520.1 | 30.166 | 421 | 236 | 7 | 10 | 377 | 5 | 420 | 5.60e-58 | 194 |
| Msa0264290 | AT5G56180.3 | 31.338 | 284 | 170 | 9 | 91 | 358 | 50 | 324 | 1.99e-35 | 132 |
| Msa0264290 | AT5G56180.1 | 31.338 | 284 | 170 | 9 | 91 | 358 | 182 | 456 | 1.21e-34 | 133 |
| Msa0264290 | AT3G12380.2 | 29.183 | 257 | 159 | 6 | 9 | 245 | 21 | 274 | 1.23e-24 | 106 |
| Msa0264290 | AT3G12380.2 | 32.738 | 168 | 106 | 4 | 207 | 368 | 550 | 716 | 3.91e-17 | 83.6 |
| Msa0264290 | AT3G12380.1 | 29.020 | 255 | 156 | 6 | 9 | 245 | 21 | 268 | 4.92e-24 | 104 |
| Msa0264290 | AT3G12380.1 | 32.738 | 168 | 106 | 4 | 207 | 368 | 544 | 710 | 3.79e-17 | 83.6 |
| Msa0264290 | AT1G73910.1 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.11e-23 | 95.1 |
| Msa0264290 | AT1G73910.2 | 35.862 | 145 | 74 | 3 | 1 | 129 | 1 | 142 | 2.11e-23 | 95.1 |
| Msa0264290 | AT5G56180.2 | 32.178 | 202 | 114 | 8 | 91 | 281 | 182 | 371 | 2.11e-19 | 89.4 |
| Msa0264290 | AT1G73910.3 | 29.268 | 123 | 71 | 2 | 1 | 107 | 1 | 123 | 3.02e-12 | 64.7 |
Find 109 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGATCTTCATGCTGCTT+GGG | 0.250595 | 2_2:-64227219 | None:intergenic |
| AGCAAAACCGGGTGCTCCTC+TGG | 0.272892 | 2_2:-64226271 | None:intergenic |
| CAACCACTGGTCTGTGATAA+TGG | 0.278942 | 2_2:+64225661 | Msa0264290:CDS |
| AACATTTAGGCTGGATTTGC+TGG | 0.289528 | 2_2:+64226025 | Msa0264290:intron |
| TGCTATGTATGTTGCTATTC+AGG | 0.305017 | 2_2:+64226369 | Msa0264290:CDS |
| GGGATGACATGGAGAAAATT+TGG | 0.308086 | 2_2:+64226215 | Msa0264290:CDS |
| AGGGCATATCCTTCATAAAT+AGG | 0.317673 | 2_2:-64226746 | None:intergenic |
| CACACGGAGTTCATTGTAAA+AGG | 0.330285 | 2_2:-64226245 | None:intergenic |
| ACCTTGATCTTCATGCTGCT+TGG | 0.336588 | 2_2:-64227220 | None:intergenic |
| AGCATGGTATTGTGAGTAAC+TGG | 0.340011 | 2_2:+64226194 | Msa0264290:CDS |
| TCAACGGTTGCAGCTGAGAT+AGG | 0.377020 | 2_2:+64225139 | Msa0264290:five_prime_UTR |
| GGTGCTTCAGTGAGCAAAAC+CGG | 0.396077 | 2_2:-64226283 | None:intergenic |
| CTCACAATACCATGCTCAAT+TGG | 0.397001 | 2_2:-64226187 | None:intergenic |
| CAAGCTCTTGCTCAAAATCA+AGG | 0.399460 | 2_2:-64226916 | None:intergenic |
| CTCATTCTGTCAGCAATGCC+AGG | 0.400398 | 2_2:-64227175 | None:intergenic |
| ATCCTTCGTCTTGATTTAGC+AGG | 0.412905 | 2_2:+64226779 | Msa0264290:CDS |
| GATGGCCAGATCATCACTAT+TGG | 0.420978 | 2_2:+64226986 | Msa0264290:CDS |
| AAGAACGACATTAACGTTGT+TGG | 0.421667 | 2_2:-64224996 | None:intergenic |
| CCGAGAGAAAATACAGTGTC+TGG | 0.425088 | 2_2:+64227254 | Msa0264290:CDS |
| GCAAAACCGGGTGCTCCTCT+GGG | 0.429592 | 2_2:-64226270 | None:intergenic |
| TACAATTTCACGCTCGGCTG+TGG | 0.436320 | 2_2:-64226861 | None:intergenic |
| TATGGAAATATTGTCCTTAG+TGG | 0.444109 | 2_2:+64227136 | Msa0264290:CDS |
| CACTGGTGTGATGGTTGGCA+TGG | 0.449957 | 2_2:+64226099 | Msa0264290:CDS |
| GATATCAGAAAGGACTTGTA+TGG | 0.450042 | 2_2:+64227118 | Msa0264290:CDS |
| TAGAATGCTGCAGAATGGTT+TGG | 0.453399 | 2_2:+64227506 | Msa0264290:exon |
| AGTGCTAAGAGAAGCTAAGA+TGG | 0.454030 | 2_2:-64227287 | None:intergenic |
| CTTGATCTTCATGCTGCTTG+GGG | 0.455780 | 2_2:-64227218 | None:intergenic |
| TATGCTAGTGGTCGAACAAC+CGG | 0.457727 | 2_2:+64226406 | Msa0264290:CDS |
| CAGCTCCAATAGTGATGATC+TGG | 0.458059 | 2_2:-64226991 | None:intergenic |
| ATCTCTTACAATTTCACGCT+CGG | 0.471407 | 2_2:-64226867 | None:intergenic |
| GCTGTGTTTCCTAGCATTGT+TGG | 0.477335 | 2_2:+64226064 | Msa0264290:CDS |
| TAATGGAACAGGAATGGTTA+AGG | 0.478719 | 2_2:+64225678 | Msa0264290:CDS |
| CTGGTCTGTGATAATGGAAC+AGG | 0.481376 | 2_2:+64225667 | Msa0264290:CDS |
| AAATACAGTGTCTGGATTGG+TGG | 0.485676 | 2_2:+64227262 | Msa0264290:CDS |
| CCAGCCTTCCATGGTTGGAA+TGG | 0.489084 | 2_2:+64227042 | Msa0264290:CDS |
| ATAGTGATGATCTGGCCATC+AGG | 0.494142 | 2_2:-64226983 | None:intergenic |
| AAGGCCGAGTACGATGAATC+TGG | 0.498285 | 2_2:+64227455 | Msa0264290:CDS |
| AAGAATAACCACGCTCGGTA+AGG | 0.505013 | 2_2:-64226832 | None:intergenic |
| ATGAAAATCCTTACCGAGCG+TGG | 0.509930 | 2_2:+64226824 | Msa0264290:CDS |
| AGAAAATACAGTGTCTGGAT+TGG | 0.510090 | 2_2:+64227259 | Msa0264290:CDS |
| CCATTCCAACCATGGAAGGC+TGG | 0.515654 | 2_2:-64227042 | None:intergenic |
| TAGAGTCAATATACCACGCT+TGG | 0.516667 | 2_2:-64226158 | None:intergenic |
| CACACTGTGCCTATTTATGA+AGG | 0.522782 | 2_2:+64226737 | Msa0264290:CDS |
| ATGCTAGGAAACACAGCCCT+TGG | 0.526579 | 2_2:-64226058 | None:intergenic |
| TGCTGGAGATGATGCTCCAA+GGG | 0.531721 | 2_2:+64226042 | Msa0264290:CDS |
| GGTGGTACTACTATGTTCCC+TGG | 0.534257 | 2_2:+64227157 | Msa0264290:CDS |
| GCAGGTATTGTACTGGACTC+TGG | 0.536986 | 2_2:+64226701 | Msa0264290:intron |
| CGATTAGCCTTTGGATTGAG+CGG | 0.541575 | 2_2:-64226304 | None:intergenic |
| GACCAGTGGTTGAATATCCT+CGG | 0.542292 | 2_2:-64225650 | None:intergenic |
| CGCCGAGGATATTCAACCAC+TGG | 0.542623 | 2_2:+64225648 | Msa0264290:CDS |
| AGTATTTATGTAATGTTAGA+CGG | 0.543570 | 2_2:+64227600 | Msa0264290:three_prime_UTR |
| CCCAAGCAGCATGAAGATCA+AGG | 0.543751 | 2_2:+64227219 | Msa0264290:CDS |
| AATATGTGCAGGTATTGTAC+TGG | 0.544002 | 2_2:+64226694 | Msa0264290:intron |
| TCGTTCTTAGAACTTAGAAT+CGG | 0.545558 | 2_2:+64225011 | Msa0264290:five_prime_UTR |
| TCCTTCGTCTTGATTTAGCA+GGG | 0.546953 | 2_2:+64226780 | Msa0264290:CDS |
| GAAGGCTGGAAAAGAACCTC+AGG | 0.547727 | 2_2:-64227028 | None:intergenic |
| TGAAATTGTAAGAGATGTGA+AGG | 0.550481 | 2_2:+64226874 | Msa0264290:CDS |
| CGTGGTCGACCAACAATGCT+AGG | 0.552232 | 2_2:-64226073 | None:intergenic |
| ACATAGTAGTACCACCACTA+AGG | 0.559599 | 2_2:-64227150 | None:intergenic |
| TTGCTGGAGATGATGCTCCA+AGG | 0.560432 | 2_2:+64226041 | Msa0264290:CDS |
| GACGAAGGATAGCATGTGGA+AGG | 0.560879 | 2_2:-64226766 | None:intergenic |
| AAGCTCTTGCTCAAAATCAA+GGG | 0.566750 | 2_2:-64226915 | None:intergenic |
| ACCACGCCACACTGGTGTGA+TGG | 0.574183 | 2_2:+64226090 | Msa0264290:CDS |
| CTAAAATATCCAATTGAGCA+TGG | 0.574515 | 2_2:+64226178 | Msa0264290:CDS |
| TGTGGCCCCAGAGGAGCACC+CGG | 0.576326 | 2_2:+64226264 | Msa0264290:CDS |
| TGAATAGCAACATACATAGC+AGG | 0.576757 | 2_2:-64226367 | None:intergenic |
| CGCCACACTGGTGTGATGGT+TGG | 0.577341 | 2_2:+64226094 | Msa0264290:CDS |
| GTGCTTCAGTGAGCAAAACC+GGG | 0.578129 | 2_2:-64226282 | None:intergenic |
| GCTTCCATTCCAACCATGGA+AGG | 0.580286 | 2_2:-64227046 | None:intergenic |
| GGTGCTCCTCTGGGGCCACA+CGG | 0.580962 | 2_2:-64226261 | None:intergenic |
| AACAGCTTCCATTCCAACCA+TGG | 0.591828 | 2_2:-64227050 | None:intergenic |
| GAGCAAGGAAATTACCGCGT+TGG | 0.592403 | 2_2:+64227195 | Msa0264290:CDS |
| GGAAATATTGTCCTTAGTGG+TGG | 0.594437 | 2_2:+64227139 | Msa0264290:CDS |
| AGTGAAAGAATAACCACGCT+CGG | 0.601145 | 2_2:-64226837 | None:intergenic |
| AGGACCAGATTCATCGTACT+CGG | 0.601521 | 2_2:-64227459 | None:intergenic |
| TGTGAGTAACTGGGATGACA+TGG | 0.601686 | 2_2:+64226204 | Msa0264290:CDS |
| TGAGCGTTTCCGTTGTCCTG+AGG | 0.602279 | 2_2:+64227012 | Msa0264290:CDS |
| ATTGTACTGGACTCTGGAGA+TGG | 0.605459 | 2_2:+64226707 | Msa0264290:CDS |
| TCAATAGCGACTTGCAACGA+TGG | 0.608358 | 2_2:+64227557 | Msa0264290:three_prime_UTR |
| GTTGGTCGACCACGCCACAC+TGG | 0.610992 | 2_2:+64226082 | Msa0264290:CDS |
| ATGGTTGGAATGGAAGCTGT+TGG | 0.612805 | 2_2:+64227052 | Msa0264290:CDS |
| TGAAGCACCGCTCAATCCAA+AGG | 0.625231 | 2_2:+64226297 | Msa0264290:CDS |
| CATGCTGCTTGGGGCCAACG+CGG | 0.625414 | 2_2:-64227209 | None:intergenic |
| CATTGCTGACAGAATGAGCA+AGG | 0.625589 | 2_2:+64227180 | Msa0264290:CDS |
| ACCATCACACCAGTGTGGCG+TGG | 0.628231 | 2_2:-64226091 | None:intergenic |
| CTGTGATAATGGAACAGGAA+TGG | 0.632340 | 2_2:+64225672 | Msa0264290:CDS |
| TTGAAAGATAGTCGTGAACG+TGG | 0.634011 | 2_2:+64225040 | Msa0264290:five_prime_UTR |
| ACTAGCATAGAGCGATAGAA+CGG | 0.636987 | 2_2:-64226392 | None:intergenic |
| CAAAACCGGGTGCTCCTCTG+GGG | 0.638105 | 2_2:-64226269 | None:intergenic |
| GTTCTATCGCTCTATGCTAG+TGG | 0.639915 | 2_2:+64226394 | Msa0264290:CDS |
| TCAAGACGAAGGATAGCATG+TGG | 0.640472 | 2_2:-64226770 | None:intergenic |
| AAGAGTTATGAACTTCCTGA+TGG | 0.641331 | 2_2:+64226968 | Msa0264290:CDS |
| TCATTCTGTCAGCAATGCCA+GGG | 0.641800 | 2_2:-64227174 | None:intergenic |
| ACTGGTGTGATGGTTGGCAT+GGG | 0.642331 | 2_2:+64226100 | Msa0264290:CDS |
| TGAACTCCGTGTGGCCCCAG+AGG | 0.648993 | 2_2:+64226255 | Msa0264290:CDS |
| GCTGCAGAATGGTTTGGTGT+AGG | 0.651370 | 2_2:+64227512 | Msa0264290:three_prime_UTR |
| AAAGACAATGGCAGACGCCG+AGG | 0.653794 | 2_2:+64225633 | Msa0264290:exon |
| GGAAAAGAACCTCAGGACAA+CGG | 0.659232 | 2_2:-64227021 | None:intergenic |
| ACGAAGGATAGCATGTGGAA+GGG | 0.659324 | 2_2:-64226765 | None:intergenic |
| GATGAAGCTCAGTCCAAGCG+TGG | 0.663966 | 2_2:+64226145 | Msa0264290:CDS |
| AATGCAGATGTGGATTGCAA+AGG | 0.664746 | 2_2:+64227436 | Msa0264290:intron |
| GTGTGATGTTGATATCAGAA+AGG | 0.677167 | 2_2:+64227108 | Msa0264290:CDS |
| TTAGACGGTGAAGTCAGCGA+AGG | 0.681518 | 2_2:+64227615 | Msa0264290:three_prime_UTR |
| GTTCCATTATCACAGACCAG+TGG | 0.693343 | 2_2:-64225664 | None:intergenic |
| TGCCAACCATCACACCAGTG+TGG | 0.706399 | 2_2:-64226096 | None:intergenic |
| GCATGGTATTGTGAGTAACT+GGG | 0.709006 | 2_2:+64226195 | Msa0264290:CDS |
| GCCCTGCTAAATCAAGACGA+AGG | 0.714666 | 2_2:-64226781 | None:intergenic |
| CTTCATAAATAGGCACAGTG+TGG | 0.723850 | 2_2:-64226736 | None:intergenic |
| AAGCAGCATGAAGATCAAGG+TGG | 0.767710 | 2_2:+64227222 | Msa0264290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTCTTTAAATTGTTT+TGG | + | chr2_2:64225548-64225567 | Msa0264290:intron | 15.0% |
| !! | TTTGTTGATATTCATGTATA+TGG | + | chr2_2:64225225-64225244 | Msa0264290:intron | 20.0% |
| !!! | CATTCTAAGTTTTTTTATAC+TGG | + | chr2_2:64226480-64226499 | Msa0264290:intron | 20.0% |
| !! | AAAGAATTGTTCTATATCTA+TGG | + | chr2_2:64226633-64226652 | Msa0264290:intron | 20.0% |
| !! | ATGTCAAAAAAAGAATTCTA+AGG | - | chr2_2:64227367-64227386 | None:intergenic | 20.0% |
| !!! | TTTGACATGTTTGATTTATT+TGG | + | chr2_2:64227379-64227398 | Msa0264290:intron | 20.0% |
| !!! | TTGACATGTTTGATTTATTT+GGG | + | chr2_2:64227380-64227399 | Msa0264290:intron | 20.0% |
| !! | AGTATTTATGTAATGTTAGA+CGG | + | chr2_2:64227600-64227619 | Msa0264290:three_prime_UTR | 20.0% |
| !!! | ACATTTTTTGTTGCTTTCAA+CGG | + | chr2_2:64225123-64225142 | Msa0264290:five_prime_UTR | 25.0% |
| !!! | ACGAGTTTTATTTGATATGT+TGG | + | chr2_2:64225320-64225339 | Msa0264290:intron | 25.0% |
| ! | TTATACACGCTATATACATA+CGG | - | chr2_2:64225379-64225398 | None:intergenic | 25.0% |
| ! | TTAGATTACCATAACATGTT+TGG | - | chr2_2:64225455-64225474 | None:intergenic | 25.0% |
| !! | TATCTTTTCTGTTTTCTCTT+CGG | + | chr2_2:64225759-64225778 | Msa0264290:intron | 25.0% |
| !! | AGTACTAAATGTTGTTGTTA+AGG | + | chr2_2:64225854-64225873 | Msa0264290:intron | 25.0% |
| !! | ACACATTAGTTTCTTAAATC+GGG | - | chr2_2:64226442-64226461 | None:intergenic | 25.0% |
| !! | GACACATTAGTTTCTTAAAT+CGG | - | chr2_2:64226443-64226462 | None:intergenic | 25.0% |
| !!! | TCAGTTTGTTAATGGATATA+TGG | + | chr2_2:64226532-64226551 | Msa0264290:intron | 25.0% |
| !!! | TATTTTTGAAAATGCAGATG+TGG | + | chr2_2:64227426-64227445 | Msa0264290:intron | 25.0% |
| TCGTTCTTAGAACTTAGAAT+CGG | + | chr2_2:64225011-64225030 | Msa0264290:five_prime_UTR | 30.0% | |
| ACGGATAAATGAAAACTTGT+GGG | - | chr2_2:64225360-64225379 | None:intergenic | 30.0% | |
| TACGGATAAATGAAAACTTG+TGG | - | chr2_2:64225361-64225380 | None:intergenic | 30.0% | |
| AAGTGTAAGAATAACTAGTG+AGG | + | chr2_2:64225483-64225502 | Msa0264290:intron | 30.0% | |
| !!! | AATTGTTTTGGAATAGCACT+TGG | + | chr2_2:64225560-64225579 | Msa0264290:intron | 30.0% |
| ATGTACTAAGAAGGAGTTTA+TGG | + | chr2_2:64225595-64225614 | Msa0264290:intron | 30.0% | |
| TCACAGCAAATTAGTAGAAA+GGG | - | chr2_2:64225984-64226003 | None:intergenic | 30.0% | |
| TTCACAGCAAATTAGTAGAA+AGG | - | chr2_2:64225985-64226004 | None:intergenic | 30.0% | |
| ! | CATTGTGATTTGCAACATTT+AGG | + | chr2_2:64226012-64226031 | Msa0264290:intron | 30.0% |
| CTAAAATATCCAATTGAGCA+TGG | + | chr2_2:64226178-64226197 | Msa0264290:CDS | 30.0% | |
| AAAAATAAGAATGCGTTGCA+AGG | + | chr2_2:64226508-64226527 | Msa0264290:intron | 30.0% | |
| ATGAAGTCTAGTTAAGTTCA+TGG | + | chr2_2:64226576-64226595 | Msa0264290:intron | 30.0% | |
| TGAAGTCTAGTTAAGTTCAT+GGG | + | chr2_2:64226577-64226596 | Msa0264290:intron | 30.0% | |
| TAGTTAAGTTCATGGGAAAA+AGG | + | chr2_2:64226584-64226603 | Msa0264290:intron | 30.0% | |
| AGTTAAGTTCATGGGAAAAA+GGG | + | chr2_2:64226585-64226604 | Msa0264290:intron | 30.0% | |
| AAGGGGAAAATAGACAAAAA+TGG | + | chr2_2:64226603-64226622 | Msa0264290:intron | 30.0% | |
| AACTCTATATGAATATGTGC+AGG | + | chr2_2:64226683-64226702 | Msa0264290:intron | 30.0% | |
| TGAAATTGTAAGAGATGTGA+AGG | + | chr2_2:64226874-64226893 | Msa0264290:CDS | 30.0% | |
| TATGGAAATATTGTCCTTAG+TGG | + | chr2_2:64227136-64227155 | Msa0264290:CDS | 30.0% | |
| ! | CATTTTCTGTGTACAATTGA+AGG | - | chr2_2:64227482-64227501 | None:intergenic | 30.0% |
| AAGAACGACATTAACGTTGT+TGG | - | chr2_2:64224999-64225018 | None:intergenic | 35.0% | |
| ACGTACGTAAAAACCTGAAA+TGG | - | chr2_2:64225190-64225209 | None:intergenic | 35.0% | |
| GTATTGTGCCAAACATGTTA+TGG | + | chr2_2:64225444-64225463 | Msa0264290:intron | 35.0% | |
| CGTCTTTCAATGTACTAAGA+AGG | + | chr2_2:64225586-64225605 | Msa0264290:intron | 35.0% | |
| !! | GTGCAGATTTTGAAAGACAA+TGG | + | chr2_2:64225621-64225640 | Msa0264290:intron | 35.0% |
| TAATGGAACAGGAATGGTTA+AGG | + | chr2_2:64225678-64225697 | Msa0264290:CDS | 35.0% | |
| ! | TTTTTCCTGAAGAAGCGATT+TGG | + | chr2_2:64225731-64225750 | Msa0264290:intron | 35.0% |
| GGACAAAAAGATGCATATGT+TGG | + | chr2_2:64226121-64226140 | Msa0264290:CDS | 35.0% | |
| !!! | ATTTTCTCACGATTAGCCTT+TGG | - | chr2_2:64226316-64226335 | None:intergenic | 35.0% |
| TGAATAGCAACATACATAGC+AGG | - | chr2_2:64226370-64226389 | None:intergenic | 35.0% | |
| ! | TGCTATGTATGTTGCTATTC+AGG | + | chr2_2:64226369-64226388 | Msa0264290:CDS | 35.0% |
| TAAATCGGGAAATGACTAAC+CGG | - | chr2_2:64226428-64226447 | None:intergenic | 35.0% | |
| !! | TGCAAGGTTCAGTTTGTTAA+TGG | + | chr2_2:64226524-64226543 | Msa0264290:intron | 35.0% |
| GTTAAGTTCATGGGAAAAAG+GGG | + | chr2_2:64226586-64226605 | Msa0264290:intron | 35.0% | |
| ! | AATATGTGCAGGTATTGTAC+TGG | + | chr2_2:64226694-64226713 | Msa0264290:intron | 35.0% |
| AGGGCATATCCTTCATAAAT+AGG | - | chr2_2:64226749-64226768 | None:intergenic | 35.0% | |
| ATCTCTTACAATTTCACGCT+CGG | - | chr2_2:64226870-64226889 | None:intergenic | 35.0% | |
| AAGCTCTTGCTCAAAATCAA+GGG | - | chr2_2:64226918-64226937 | None:intergenic | 35.0% | |
| AAGAGTTATGAACTTCCTGA+TGG | + | chr2_2:64226968-64226987 | Msa0264290:CDS | 35.0% | |
| GTGTGATGTTGATATCAGAA+AGG | + | chr2_2:64227108-64227127 | Msa0264290:CDS | 35.0% | |
| GATATCAGAAAGGACTTGTA+TGG | + | chr2_2:64227118-64227137 | Msa0264290:CDS | 35.0% | |
| AGAAAATACAGTGTCTGGAT+TGG | + | chr2_2:64227259-64227278 | Msa0264290:CDS | 35.0% | |
| ! | TTCTCTTAGCACTTTTCAAC+AGG | + | chr2_2:64227297-64227316 | Msa0264290:CDS | 35.0% |
| TTGAAAGATAGTCGTGAACG+TGG | + | chr2_2:64225040-64225059 | Msa0264290:five_prime_UTR | 40.0% | |
| !! | CTGTGATAATGGAACAGGAA+TGG | + | chr2_2:64225672-64225691 | Msa0264290:CDS | 40.0% |
| ! | TCTTTTCTACGATCTGCGAT+TGG | + | chr2_2:64225928-64225947 | Msa0264290:intron | 40.0% |
| ! | GTGATTTGCAACATTTAGGC+TGG | + | chr2_2:64226016-64226035 | Msa0264290:intron | 40.0% |
| AACATTTAGGCTGGATTTGC+TGG | + | chr2_2:64226025-64226044 | Msa0264290:intron | 40.0% | |
| TAGAGTCAATATACCACGCT+TGG | - | chr2_2:64226161-64226180 | None:intergenic | 40.0% | |
| CTCACAATACCATGCTCAAT+TGG | - | chr2_2:64226190-64226209 | None:intergenic | 40.0% | |
| AGCATGGTATTGTGAGTAAC+TGG | + | chr2_2:64226194-64226213 | Msa0264290:CDS | 40.0% | |
| GCATGGTATTGTGAGTAACT+GGG | + | chr2_2:64226195-64226214 | Msa0264290:CDS | 40.0% | |
| GGGATGACATGGAGAAAATT+TGG | + | chr2_2:64226215-64226234 | Msa0264290:CDS | 40.0% | |
| CACACGGAGTTCATTGTAAA+AGG | - | chr2_2:64226248-64226267 | None:intergenic | 40.0% | |
| ! | CTTTTACAATGAACTCCGTG+TGG | + | chr2_2:64226246-64226265 | Msa0264290:CDS | 40.0% |
| ACTAGCATAGAGCGATAGAA+CGG | - | chr2_2:64226395-64226414 | None:intergenic | 40.0% | |
| CTTCATAAATAGGCACAGTG+TGG | - | chr2_2:64226739-64226758 | None:intergenic | 40.0% | |
| CACACTGTGCCTATTTATGA+AGG | + | chr2_2:64226737-64226756 | Msa0264290:CDS | 40.0% | |
| ATCCTTCGTCTTGATTTAGC+AGG | + | chr2_2:64226779-64226798 | Msa0264290:CDS | 40.0% | |
| TCCTTCGTCTTGATTTAGCA+GGG | + | chr2_2:64226780-64226799 | Msa0264290:CDS | 40.0% | |
| !! | TTTTCATCAAGGCATCAGTG+AGG | - | chr2_2:64226811-64226830 | None:intergenic | 40.0% |
| ! | CTCGGTAAGGATTTTCATCA+AGG | - | chr2_2:64226822-64226841 | None:intergenic | 40.0% |
| AGTGAAAGAATAACCACGCT+CGG | - | chr2_2:64226840-64226859 | None:intergenic | 40.0% | |
| CAAGCTCTTGCTCAAAATCA+AGG | - | chr2_2:64226919-64226938 | None:intergenic | 40.0% | |
| GGAAATATTGTCCTTAGTGG+TGG | + | chr2_2:64227139-64227158 | Msa0264290:CDS | 40.0% | |
| ACATAGTAGTACCACCACTA+AGG | - | chr2_2:64227153-64227172 | None:intergenic | 40.0% | |
| ! | CAGACACTGTATTTTCTCTC+GGG | - | chr2_2:64227256-64227275 | None:intergenic | 40.0% |
| ! | CCAGACACTGTATTTTCTCT+CGG | - | chr2_2:64227257-64227276 | None:intergenic | 40.0% |
| ! | AAATACAGTGTCTGGATTGG+TGG | + | chr2_2:64227262-64227281 | Msa0264290:CDS | 40.0% |
| AGTGCTAAGAGAAGCTAAGA+TGG | - | chr2_2:64227290-64227309 | None:intergenic | 40.0% | |
| AAGGCATGCATAAATACACG+CGG | - | chr2_2:64227348-64227367 | None:intergenic | 40.0% | |
| ! | AATGCAGATGTGGATTGCAA+AGG | + | chr2_2:64227436-64227455 | Msa0264290:intron | 40.0% |
| !!! | GCTTTTAGAATGCTGCAGAA+TGG | + | chr2_2:64227501-64227520 | Msa0264290:exon | 40.0% |
| TAGAATGCTGCAGAATGGTT+TGG | + | chr2_2:64227506-64227525 | Msa0264290:exon | 40.0% | |
| ! | CTCTTTTGACGCACCATTTC+AGG | + | chr2_2:64225174-64225193 | Msa0264290:five_prime_UTR | 45.0% |
| TGATATGTTGGAGCTCGCAT+TGG | + | chr2_2:64225332-64225351 | Msa0264290:intron | 45.0% | |
| GACCAGTGGTTGAATATCCT+CGG | - | chr2_2:64225653-64225672 | None:intergenic | 45.0% | |
| ! | CAACCACTGGTCTGTGATAA+TGG | + | chr2_2:64225661-64225680 | Msa0264290:CDS | 45.0% |
| GTTCCATTATCACAGACCAG+TGG | - | chr2_2:64225667-64225686 | None:intergenic | 45.0% | |
| !! | CTGGTCTGTGATAATGGAAC+AGG | + | chr2_2:64225667-64225686 | Msa0264290:CDS | 45.0% |
| CATAGCCAAATCGCTTCTTC+AGG | - | chr2_2:64225739-64225758 | None:intergenic | 45.0% | |
| GCTGTGTTTCCTAGCATTGT+TGG | + | chr2_2:64226064-64226083 | Msa0264290:CDS | 45.0% | |
| TGTGAGTAACTGGGATGACA+TGG | + | chr2_2:64226204-64226223 | Msa0264290:CDS | 45.0% | |
| !! | CGATTAGCCTTTGGATTGAG+CGG | - | chr2_2:64226307-64226326 | None:intergenic | 45.0% |
| GTTCTATCGCTCTATGCTAG+TGG | + | chr2_2:64226394-64226413 | Msa0264290:CDS | 45.0% | |
| TATGCTAGTGGTCGAACAAC+CGG | + | chr2_2:64226406-64226425 | Msa0264290:CDS | 45.0% | |
| ! | ATTGTACTGGACTCTGGAGA+TGG | + | chr2_2:64226707-64226726 | Msa0264290:CDS | 45.0% |
| ACGAAGGATAGCATGTGGAA+GGG | - | chr2_2:64226768-64226787 | None:intergenic | 45.0% | |
| TCAAGACGAAGGATAGCATG+TGG | - | chr2_2:64226773-64226792 | None:intergenic | 45.0% | |
| ATGAAAATCCTTACCGAGCG+TGG | + | chr2_2:64226824-64226843 | Msa0264290:CDS | 45.0% | |
| AAGAATAACCACGCTCGGTA+AGG | - | chr2_2:64226835-64226854 | None:intergenic | 45.0% | |
| ATAGTGATGATCTGGCCATC+AGG | - | chr2_2:64226986-64227005 | None:intergenic | 45.0% | |
| GATGGCCAGATCATCACTAT+TGG | + | chr2_2:64226986-64227005 | Msa0264290:CDS | 45.0% | |
| CAGCTCCAATAGTGATGATC+TGG | - | chr2_2:64226994-64227013 | None:intergenic | 45.0% | |
| GGAAAAGAACCTCAGGACAA+CGG | - | chr2_2:64227024-64227043 | None:intergenic | 45.0% | |
| AACAGCTTCCATTCCAACCA+TGG | - | chr2_2:64227053-64227072 | None:intergenic | 45.0% | |
| ATGGTTGGAATGGAAGCTGT+TGG | + | chr2_2:64227052-64227071 | Msa0264290:CDS | 45.0% | |
| TCATTCTGTCAGCAATGCCA+GGG | - | chr2_2:64227177-64227196 | None:intergenic | 45.0% | |
| CATTGCTGACAGAATGAGCA+AGG | + | chr2_2:64227180-64227199 | Msa0264290:CDS | 45.0% | |
| ! | CTTGATCTTCATGCTGCTTG+GGG | - | chr2_2:64227221-64227240 | None:intergenic | 45.0% |
| ! | CCTTGATCTTCATGCTGCTT+GGG | - | chr2_2:64227222-64227241 | None:intergenic | 45.0% |
| ACCTTGATCTTCATGCTGCT+TGG | - | chr2_2:64227223-64227242 | None:intergenic | 45.0% | |
| AAGCAGCATGAAGATCAAGG+TGG | + | chr2_2:64227222-64227241 | Msa0264290:CDS | 45.0% | |
| ! | ACACTGTATTTTCTCTCGGG+TGG | - | chr2_2:64227253-64227272 | None:intergenic | 45.0% |
| CCGAGAGAAAATACAGTGTC+TGG | + | chr2_2:64227254-64227273 | Msa0264290:CDS | 45.0% | |
| CGCGGACAATGTGAGTATAT+CGG | - | chr2_2:64227330-64227349 | None:intergenic | 45.0% | |
| AGGACCAGATTCATCGTACT+CGG | - | chr2_2:64227462-64227481 | None:intergenic | 45.0% | |
| TCAATAGCGACTTGCAACGA+TGG | + | chr2_2:64227557-64227576 | Msa0264290:three_prime_UTR | 45.0% | |
| TCAACGGTTGCAGCTGAGAT+AGG | + | chr2_2:64225139-64225158 | Msa0264290:five_prime_UTR | 50.0% | |
| TTGCTGGAGATGATGCTCCA+AGG | + | chr2_2:64226041-64226060 | Msa0264290:CDS | 50.0% | |
| TGCTGGAGATGATGCTCCAA+GGG | + | chr2_2:64226042-64226061 | Msa0264290:CDS | 50.0% | |
| ATGCTAGGAAACACAGCCCT+TGG | - | chr2_2:64226061-64226080 | None:intergenic | 50.0% | |
| ACTGGTGTGATGGTTGGCAT+GGG | + | chr2_2:64226100-64226119 | Msa0264290:CDS | 50.0% | |
| GTGCTTCAGTGAGCAAAACC+GGG | - | chr2_2:64226285-64226304 | None:intergenic | 50.0% | |
| GGTGCTTCAGTGAGCAAAAC+CGG | - | chr2_2:64226286-64226305 | None:intergenic | 50.0% | |
| !! | TGAAGCACCGCTCAATCCAA+AGG | + | chr2_2:64226297-64226316 | Msa0264290:CDS | 50.0% |
| ! | GCAGGTATTGTACTGGACTC+TGG | + | chr2_2:64226701-64226720 | Msa0264290:intron | 50.0% |
| GACGAAGGATAGCATGTGGA+AGG | - | chr2_2:64226769-64226788 | None:intergenic | 50.0% | |
| GCCCTGCTAAATCAAGACGA+AGG | - | chr2_2:64226784-64226803 | None:intergenic | 50.0% | |
| TACAATTTCACGCTCGGCTG+TGG | - | chr2_2:64226864-64226883 | None:intergenic | 50.0% | |
| GAAGGCTGGAAAAGAACCTC+AGG | - | chr2_2:64227031-64227050 | None:intergenic | 50.0% | |
| ! | GGTTCTTTTCCAGCCTTCCA+TGG | + | chr2_2:64227033-64227052 | Msa0264290:CDS | 50.0% |
| ! | CTTTTCCAGCCTTCCATGGT+TGG | + | chr2_2:64227037-64227056 | Msa0264290:CDS | 50.0% |
| GCTTCCATTCCAACCATGGA+AGG | - | chr2_2:64227049-64227068 | None:intergenic | 50.0% | |
| GGTGGTACTACTATGTTCCC+TGG | + | chr2_2:64227157-64227176 | Msa0264290:CDS | 50.0% | |
| CTCATTCTGTCAGCAATGCC+AGG | - | chr2_2:64227178-64227197 | None:intergenic | 50.0% | |
| GAGCAAGGAAATTACCGCGT+TGG | + | chr2_2:64227195-64227214 | Msa0264290:CDS | 50.0% | |
| CCCAAGCAGCATGAAGATCA+AGG | + | chr2_2:64227219-64227238 | Msa0264290:CDS | 50.0% | |
| AAGGCCGAGTACGATGAATC+TGG | + | chr2_2:64227455-64227474 | Msa0264290:CDS | 50.0% | |
| !! | GCTGCAGAATGGTTTGGTGT+AGG | + | chr2_2:64227512-64227531 | Msa0264290:three_prime_UTR | 50.0% |
| TTAGACGGTGAAGTCAGCGA+AGG | + | chr2_2:64227615-64227634 | Msa0264290:three_prime_UTR | 50.0% | |
| AAAGACAATGGCAGACGCCG+AGG | + | chr2_2:64225633-64225652 | Msa0264290:exon | 55.0% | |
| CGCCGAGGATATTCAACCAC+TGG | + | chr2_2:64225648-64225667 | Msa0264290:CDS | 55.0% | |
| CGTGGTCGACCAACAATGCT+AGG | - | chr2_2:64226076-64226095 | None:intergenic | 55.0% | |
| TGCCAACCATCACACCAGTG+TGG | - | chr2_2:64226099-64226118 | None:intergenic | 55.0% | |
| CACTGGTGTGATGGTTGGCA+TGG | + | chr2_2:64226099-64226118 | Msa0264290:CDS | 55.0% | |
| GATGAAGCTCAGTCCAAGCG+TGG | + | chr2_2:64226145-64226164 | Msa0264290:CDS | 55.0% | |
| TGAGCGTTTCCGTTGTCCTG+AGG | + | chr2_2:64227012-64227031 | Msa0264290:CDS | 55.0% | |
| CCATTCCAACCATGGAAGGC+TGG | - | chr2_2:64227045-64227064 | None:intergenic | 55.0% | |
| CCAGCCTTCCATGGTTGGAA+TGG | + | chr2_2:64227042-64227061 | Msa0264290:CDS | 55.0% | |
| ACCACGCCACACTGGTGTGA+TGG | + | chr2_2:64226090-64226109 | Msa0264290:CDS | 60.0% | |
| ACCATCACACCAGTGTGGCG+TGG | - | chr2_2:64226094-64226113 | None:intergenic | 60.0% | |
| CGCCACACTGGTGTGATGGT+TGG | + | chr2_2:64226094-64226113 | Msa0264290:CDS | 60.0% | |
| CAAAACCGGGTGCTCCTCTG+GGG | - | chr2_2:64226272-64226291 | None:intergenic | 60.0% | |
| GCAAAACCGGGTGCTCCTCT+GGG | - | chr2_2:64226273-64226292 | None:intergenic | 60.0% | |
| AGCAAAACCGGGTGCTCCTC+TGG | - | chr2_2:64226274-64226293 | None:intergenic | 60.0% | |
| GTTGGTCGACCACGCCACAC+TGG | + | chr2_2:64226082-64226101 | Msa0264290:CDS | 65.0% | |
| TGAACTCCGTGTGGCCCCAG+AGG | + | chr2_2:64226255-64226274 | Msa0264290:CDS | 65.0% | |
| ! | CATGCTGCTTGGGGCCAACG+CGG | - | chr2_2:64227212-64227231 | None:intergenic | 65.0% |
| !! | GGTGCTCCTCTGGGGCCACA+CGG | - | chr2_2:64226264-64226283 | None:intergenic | 70.0% |
| !! | TGTGGCCCCAGAGGAGCACC+CGG | + | chr2_2:64226264-64226283 | Msa0264290:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 64224979 | 64227685 | 64224979 | ID=Msa0264290;Name=Msa0264290 |
| chr2_2 | mRNA | 64224979 | 64227685 | 64224979 | ID=Msa0264290-mRNA-1;Parent=Msa0264290;Name=Msa0264290-mRNA-1;_AED=0.06;_eAED=0.06;_QI=230|1|1|1|0.75|0.6|5|177|377 |
| chr2_2 | exon | 64224979 | 64225195 | 64224979 | ID=Msa0264290-mRNA-1:exon:19988;Parent=Msa0264290-mRNA-1 |
| chr2_2 | exon | 64225627 | 64225699 | 64225627 | ID=Msa0264290-mRNA-1:exon:19989;Parent=Msa0264290-mRNA-1 |
| chr2_2 | exon | 64226034 | 64226427 | 64226034 | ID=Msa0264290-mRNA-1:exon:19990;Parent=Msa0264290-mRNA-1 |
| chr2_2 | exon | 64226705 | 64227318 | 64226705 | ID=Msa0264290-mRNA-1:exon:19991;Parent=Msa0264290-mRNA-1 |
| chr2_2 | exon | 64227443 | 64227685 | 64227443 | ID=Msa0264290-mRNA-1:exon:19992;Parent=Msa0264290-mRNA-1 |
| chr2_2 | five_prime_UTR | 64224979 | 64225195 | 64224979 | ID=Msa0264290-mRNA-1:five_prime_utr;Parent=Msa0264290-mRNA-1 |
| chr2_2 | five_prime_UTR | 64225627 | 64225639 | 64225627 | ID=Msa0264290-mRNA-1:five_prime_utr;Parent=Msa0264290-mRNA-1 |
| chr2_2 | CDS | 64225640 | 64225699 | 64225640 | ID=Msa0264290-mRNA-1:cds;Parent=Msa0264290-mRNA-1 |
| chr2_2 | CDS | 64226034 | 64226427 | 64226034 | ID=Msa0264290-mRNA-1:cds;Parent=Msa0264290-mRNA-1 |
| chr2_2 | CDS | 64226705 | 64227318 | 64226705 | ID=Msa0264290-mRNA-1:cds;Parent=Msa0264290-mRNA-1 |
| chr2_2 | CDS | 64227443 | 64227508 | 64227443 | ID=Msa0264290-mRNA-1:cds;Parent=Msa0264290-mRNA-1 |
| chr2_2 | three_prime_UTR | 64227509 | 64227685 | 64227509 | ID=Msa0264290-mRNA-1:three_prime_utr;Parent=Msa0264290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
