AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0506700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506700 MtrunA17_Chr3g0144151 99.335 451 3 0 1 451 1 451 0.0 917
Msa0506700 MtrunA17_Chr7g0252641 74.742 388 90 5 38 422 21 403 0.0 527
Msa0506700 MtrunA17_Chr2g0310421 45.346 419 212 10 1 414 1 407 4.48e-108 326
Msa0506700 MtrunA17_Chr4g0057861 48.680 341 166 7 84 421 4 338 9.07e-101 304
Msa0506700 MtrunA17_Chr6g0458861 47.214 341 171 7 83 420 1 335 4.04e-100 303
Msa0506700 MtrunA17_Chr3g0122971 47.432 331 148 8 85 414 6 311 6.83e-95 288
Msa0506700 MtrunA17_Chr8g0357071 44.314 255 123 8 166 407 59 307 8.14e-57 190
Msa0506700 MtrunA17_Chr8g0360951 44.898 147 70 3 262 407 1 137 1.02e-29 112
Msa0506700 MtrunA17_Chr7g0235831 77.941 68 8 1 167 234 28 88 4.87e-28 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0506700 AT1G42970.1 84.989 453 60 3 1 451 1 447 0.0 767
Msa0506700 AT1G12900.5 75.325 385 92 3 38 422 59 440 0.0 543
Msa0506700 AT1G12900.1 75.325 385 92 3 38 422 17 398 0.0 541
Msa0506700 AT3G26650.1 75.969 387 85 6 39 422 14 395 0.0 534
Msa0506700 AT1G12900.3 81.395 344 61 3 79 422 9 349 0.0 522
Msa0506700 AT1G12900.4 81.395 344 61 3 79 422 9 349 0.0 522
Msa0506700 AT1G12900.2 85.600 250 33 3 173 422 70 316 9.39e-134 388
Msa0506700 AT1G79530.1 51.603 343 158 6 79 419 80 416 1.21e-111 335
Msa0506700 AT1G16300.1 44.988 409 202 9 28 419 12 414 4.27e-108 326
Msa0506700 AT3G04120.1 48.348 333 163 7 85 414 5 331 1.38e-100 304
Msa0506700 AT1G13440.1 47.447 333 166 7 85 414 5 331 6.57e-100 302
Msa0506700 AT1G13440.2 42.943 333 153 7 85 414 5 303 1.41e-81 254

Find 166 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATTTACAATGAAAATTA+TGG 0.211608 3_4:+53370891 None:intergenic
CAGTCAAAGAGTGGTGGATT+TGG 0.255900 3_4:-53367746 Msa0506700:CDS
TGTGTTTGTGCAGAGGCTTC+TGG 0.276840 3_4:-53368595 Msa0506700:intron
AGAGACTGTTGCTAAGTTAA+AGG 0.296898 3_4:-53369959 Msa0506700:CDS
GTAATTCAAAGGAGGGAAAT+AGG 0.299529 3_4:-53367323 Msa0506700:three_prime_UTR
TGGATGTGCTTTCCGGCTCC+AGG 0.316464 3_4:+53369349 None:intergenic
CTTCCTGCTTGAGGGGTGCC+TGG 0.319194 3_4:+53367700 None:intergenic
GATTGAGAGAAAGAAAATTA+TGG 0.320609 3_4:+53370962 None:intergenic
TTGAAATATGATTCTATGCT+TGG 0.332977 3_4:-53369684 Msa0506700:CDS
ACCTGCTTGGATGTGCTTTC+CGG 0.335594 3_4:+53369342 None:intergenic
TACCAAGTTAAATTTGTCTA+TGG 0.345528 3_4:-53367462 Msa0506700:three_prime_UTR
AGCTGTGATGATAACTTTCT+TGG 0.347115 3_4:+53369318 None:intergenic
GGGATCCTCTTAAGCTTCCT+TGG 0.348148 3_4:-53369581 Msa0506700:CDS
ATGACAATGAATGGGGTTAC+AGG 0.348712 3_4:-53368197 Msa0506700:intron
AATGAGACTATTACAGTTGA+TGG 0.355152 3_4:-53369630 Msa0506700:CDS
GGAATATCAGCGCCCTTTGC+AGG 0.358017 3_4:+53369295 None:intergenic
AGCCTTGGCTGCTCCTGTGC+TGG 0.378441 3_4:+53368515 None:intergenic
AATGTTCAGCGCTGCAGCCC+TGG 0.380674 3_4:+53368545 None:intergenic
TATATTTCCAGGAATTGTTA+AGG 0.381383 3_4:-53368911 Msa0506700:intron
AGAAAGAAAATTATGGTTGC+TGG 0.384862 3_4:+53370969 None:intergenic
TATTGACTCTTCCTTGACTA+TGG 0.388165 3_4:-53368256 Msa0506700:CDS
CTTGGTATGAACTACGGATT+AGG 0.388847 3_4:+53367286 None:intergenic
TTCGACCGTGCCAGCATCTC+AGG 0.393236 3_4:+53369899 None:intergenic
CTACAAGATAAGATAATGTT+TGG 0.397031 3_4:+53371032 None:intergenic
GATCTCCACTTCCTGCTTGA+GGG 0.403676 3_4:+53367692 None:intergenic
TGCTCCCTTTGTGAAGATCC+TGG 0.407466 3_4:-53369040 Msa0506700:CDS
GATATTCCAACTTACGTTGT+TGG 0.408355 3_4:-53369280 Msa0506700:CDS
GATGGAAATCTTGTGCTTGT+AGG 0.410234 3_4:+53370786 None:intergenic
GCAAATTATAATCAGGCCAT+TGG 0.410743 3_4:-53370000 Msa0506700:intron
CTATGGTCAATAATGAGTTT+TGG 0.416744 3_4:-53367445 Msa0506700:three_prime_UTR
TATGGTCATGGGAGATGATA+TGG 0.417158 3_4:-53368238 Msa0506700:CDS
ATATTTCCAGGAATTGTTAA+GGG 0.418720 3_4:-53368910 Msa0506700:intron
CCTTTGAGGCACATTGAGTT+GGG 0.421860 3_4:+53370745 None:intergenic
CTCTTCCTTGACTATGGTCA+TGG 0.425322 3_4:-53368250 Msa0506700:CDS
GGATCCTCTTAAGCTTCCTT+GGG 0.426766 3_4:-53369580 Msa0506700:CDS
TTATGATGTCGGCTACTTCA+TGG 0.429613 3_4:+53369236 None:intergenic
TCAGGGAACTGGAGTGTTTG+TGG 0.437834 3_4:-53369377 Msa0506700:intron
CTTGGCTGCTCCTGTGCTGG+TGG 0.441233 3_4:+53368518 None:intergenic
AATGCAAAGTTTATGAATAG+AGG 0.442277 3_4:-53367630 Msa0506700:exon
AGGTCAACAACTGAAACATT+AGG 0.444204 3_4:+53368429 None:intergenic
AAGCTTCCTTGGGCTGAGCT+TGG 0.444289 3_4:-53369570 Msa0506700:CDS
CCATCCTTGTTGTCTCTAGC+AGG 0.444814 3_4:-53369602 Msa0506700:CDS
ATGAAGTAGCCGACATCATA+AGG 0.446117 3_4:-53369234 Msa0506700:intron
TCAGCCCAAGGAAGCTTAAG+AGG 0.447395 3_4:+53369576 None:intergenic
TTTACTCCAACAACGTAAGT+TGG 0.460656 3_4:+53369274 None:intergenic
AAGATCCTGGATGAAGAATT+CGG 0.462539 3_4:-53369027 Msa0506700:intron
TTGGCTGCTCCTGTGCTGGT+GGG 0.463193 3_4:+53368519 None:intergenic
AAAGAGTGAGAGGCCTTTGA+TGG 0.466577 3_4:+53370768 None:intergenic
AAGGTAGCAATCAATGGTTT+CGG 0.472649 3_4:-53369940 Msa0506700:CDS
GGATCTCCACTTCCTGCTTG+AGG 0.477471 3_4:+53367691 None:intergenic
ACCTTTGAGGCACATTGAGT+TGG 0.481118 3_4:+53370744 None:intergenic
AAGTTAAAGGTAGCAATCAA+TGG 0.481757 3_4:-53369946 Msa0506700:CDS
CACCAGCACAGGAGCAGCCA+AGG 0.482178 3_4:-53368517 Msa0506700:CDS
CCCAACTCAATGTGCCTCAA+AGG 0.482556 3_4:-53370745 Msa0506700:intron
TCTAGTGCTGCCACAGCTCA+AGG 0.485246 3_4:-53368487 Msa0506700:CDS
ATGGAAATCTTGTGCTTGTA+GGG 0.485305 3_4:+53370787 None:intergenic
TTGCTTGGTATGACAATGAA+TGG 0.485506 3_4:-53368206 Msa0506700:CDS
CATTGGATCAACTGCTGTGA+GGG 0.487373 3_4:-53369983 Msa0506700:CDS
GAAAGAAAATTATGGTTGCT+GGG 0.488781 3_4:+53370970 None:intergenic
GGCACCCCTCAAGCAGGAAG+TGG 0.490466 3_4:-53367697 Msa0506700:CDS
TAACTTTCTTGGCACCTGCT+TGG 0.490883 3_4:+53369329 None:intergenic
ATCAATGGTTTCGGACGCAT+TGG 0.494136 3_4:-53369931 Msa0506700:CDS
CAGAGAGAGTGAAACCTTTG+AGG 0.495920 3_4:+53370731 None:intergenic
GTAGAAATTTCCTGAGATGC+TGG 0.496100 3_4:-53369909 Msa0506700:CDS
AAAGGGAGCAAGACAGTTTG+TGG 0.498610 3_4:+53369053 None:intergenic
CACATCTAGTAGCAAACAAA+TGG 0.498642 3_4:-53367723 Msa0506700:CDS
AGCAGGAAGTGGAGATCCAT+TGG 0.500903 3_4:-53367686 Msa0506700:CDS
TGGAATTGACATTGTCATTG+AGG 0.500940 3_4:-53369550 Msa0506700:intron
TGCTTGGTATGACAATGAAT+GGG 0.502219 3_4:-53368205 Msa0506700:CDS
GACCATAGACAAATTTAACT+TGG 0.506329 3_4:+53367460 None:intergenic
TGGCTGCTCCTGTGCTGGTG+GGG 0.506396 3_4:+53368520 None:intergenic
GCTTACCGAATTCTTCATCC+AGG 0.508541 3_4:+53369022 None:intergenic
TTGACAACAATTACTTCAAG+TGG 0.510208 3_4:+53369868 None:intergenic
TATCATACGTAAATAACAAA+AGG 0.515255 3_4:+53367554 None:intergenic
GGGACCATTGAAAGGTGTAT+TGG 0.515641 3_4:-53368337 Msa0506700:CDS
TCATCCAGGATCTTCACAAA+GGG 0.515849 3_4:+53369036 None:intergenic
GGAGTGTTTGTGGATGGCCC+TGG 0.517318 3_4:-53369367 Msa0506700:CDS
GAGATGCTGGCACGGTCGAA+AGG 0.519276 3_4:-53369896 Msa0506700:CDS
ATCATCACAGCTCCTGCAAA+GGG 0.520327 3_4:-53369307 Msa0506700:CDS
AACATTGTCCCCACCAGCAC+AGG 0.520340 3_4:-53368528 Msa0506700:CDS
GCCGGAAAGCACATCCAAGC+AGG 0.525097 3_4:-53369343 Msa0506700:CDS
ATCTCCACTTCCTGCTTGAG+GGG 0.526358 3_4:+53367693 None:intergenic
GGATGTGCTTTCCGGCTCCA+GGG 0.530672 3_4:+53369350 None:intergenic
TTTGTGGATGGCCCTGGAGC+CGG 0.533936 3_4:-53369361 Msa0506700:CDS
TGTGGTGAATGTTGCGAAGA+AGG 0.537700 3_4:-53368406 Msa0506700:CDS
TTTGCTTGTGCAGAGACTTG+AGG 0.537829 3_4:-53370647 Msa0506700:intron
AGTCCAATGATCAGAATACA+TGG 0.538809 3_4:-53371059 None:intergenic
GTCTCCTGTGTAGGAATGTG+TGG 0.543087 3_4:+53368876 None:intergenic
TTGTAGAAGCTAAAGCTGCA+TGG 0.544120 3_4:+53370814 None:intergenic
ACAGGGACTTGAGAAGAGCC+AGG 0.544310 3_4:-53368563 Msa0506700:CDS
ATAAACTTTGCATTCCTCAT+CGG 0.548279 3_4:+53367639 None:intergenic
CCTCACAGCAGTTGATCCAA+TGG 0.549314 3_4:+53369984 None:intergenic
CTTGGTTGCATCTATAGCTA+TGG 0.550615 3_4:-53370841 Msa0506700:exon
TGGCCAGGCACCCCTCAAGC+AGG 0.555510 3_4:-53367703 Msa0506700:CDS
TGTAGAAGCTAAAGCTGCAT+GGG 0.556274 3_4:+53370815 None:intergenic
CTTTGCATTCCTCATCGGAC+GGG 0.556540 3_4:+53367644 None:intergenic
CAAAATTAGTAATTCAAAGG+AGG 0.559960 3_4:-53367331 Msa0506700:three_prime_UTR
TGTTTCAGTTGTTGACCTTG+TGG 0.563274 3_4:-53368424 Msa0506700:CDS
ACACAAAATTAGTAATTCAA+AGG 0.565649 3_4:-53367334 Msa0506700:three_prime_UTR
AAAGCCTTACCTTATGATGT+CGG 0.566701 3_4:+53369225 None:intergenic
CTCTCTAGCATTACTAGCAT+AGG 0.567423 3_4:+53370585 None:intergenic
TATCATCACAGCTCCTGCAA+AGG 0.567484 3_4:-53369308 Msa0506700:CDS
AACAAATGGCTTGCTTGTAG+AGG 0.570902 3_4:+53367581 None:intergenic
ATATGGTCAAGGTGGTTGCT+TGG 0.572598 3_4:-53368221 Msa0506700:CDS
GTAGGAATGTGTGGTTGTCA+TGG 0.573317 3_4:+53368885 None:intergenic
ACATCCAATACACCTTTCAA+TGG 0.575028 3_4:+53368333 None:intergenic
GTCTCACAGAAGTCCTCCAA+TGG 0.575066 3_4:+53367670 None:intergenic
CCTGCTAGAGACAACAAGGA+TGG 0.575224 3_4:+53369602 None:intergenic
CATCCTTGTTGTCTCTAGCA+GGG 0.575538 3_4:-53369601 Msa0506700:CDS
TTGAGCTTTCCCTTGAGCTG+TGG 0.576142 3_4:+53368477 None:intergenic
AAAACACTTGGTATGAACTA+CGG 0.577010 3_4:+53367280 None:intergenic
GCTTGTGCAGAGACTTGAGG+TGG 0.577189 3_4:-53370644 Msa0506700:intron
GGAGTAAATGAGCAAGACTA+CGG 0.579497 3_4:-53369259 Msa0506700:CDS
GGCTTCTGGATGCTTCACAC+AGG 0.580102 3_4:-53368581 Msa0506700:CDS
ATATACCTGGTCTCCTGTGT+AGG 0.580151 3_4:+53368867 None:intergenic
CTAGTAGCAAACAAATGGCC+AGG 0.581197 3_4:-53367718 Msa0506700:CDS
AGCATTCAGAAAGGCAGCTG+AGG 0.582409 3_4:-53368358 Msa0506700:CDS
TGATTTCAGTCAAAGAGTGG+TGG 0.586479 3_4:-53367752 Msa0506700:intron
CTTGAGGTGGCTGAATTCAG+TGG 0.586722 3_4:-53370631 Msa0506700:CDS
AAAATTAGTAATTCAAAGGA+GGG 0.587504 3_4:-53367330 Msa0506700:three_prime_UTR
ACATTCCTACACAGGAGACC+AGG 0.591972 3_4:-53368872 Msa0506700:intron
CTGCTAGAGACAACAAGGAT+GGG 0.592139 3_4:+53369603 None:intergenic
AAAGAAAATTATGGTTGCTG+GGG 0.594470 3_4:+53370971 None:intergenic
TTCATCCAGGATCTTCACAA+AGG 0.595211 3_4:+53369035 None:intergenic
GCAGCTGAGGGACCATTGAA+AGG 0.596252 3_4:-53368345 Msa0506700:CDS
GTCAATAGTTGAAGAAACAT+CGG 0.596396 3_4:+53368272 None:intergenic
GGAACTGGAGTGTTTGTGGA+TGG 0.597007 3_4:-53369373 Msa0506700:CDS
ACTTTGCATTCCTCATCGGA+CGG 0.598687 3_4:+53367643 None:intergenic
GCATTCAGAAAGGCAGCTGA+GGG 0.599413 3_4:-53368357 Msa0506700:CDS
TGTCAATGCAGCATTCAGAA+AGG 0.602285 3_4:-53368367 Msa0506700:CDS
TCTTCCTTGACTATGGTCAT+GGG 0.605006 3_4:-53368249 Msa0506700:CDS
CTAGTGCTGCCACAGCTCAA+GGG 0.606922 3_4:-53368486 Msa0506700:CDS
AGGAAGTGGAGATCCATTGG+AGG 0.613281 3_4:-53367683 Msa0506700:CDS
GTGGTGAATGTTGCGAAGAA+GGG 0.613677 3_4:-53368405 Msa0506700:CDS
CAGCTCAAGGGAAAGCTCAA+CGG 0.614061 3_4:-53368474 Msa0506700:CDS
ATCTCCCATGACCATAGTCA+AGG 0.618363 3_4:+53368245 None:intergenic
ACAACTGAAACATTAGGTGT+TGG 0.619133 3_4:+53368435 None:intergenic
TTGAAGAAACATCGGTGCAG+CGG 0.621950 3_4:+53368280 None:intergenic
AATTTCCTGAGATGCTGGCA+CGG 0.622607 3_4:-53369904 Msa0506700:CDS
CAGCACTAGAGAGACAGCCT+TGG 0.622925 3_4:+53368500 None:intergenic
CGGAAGTCAACAGACACAAG+TGG 0.626646 3_4:+53368300 None:intergenic
TCAATTCCAAGCTCAGCCCA+AGG 0.629195 3_4:+53369564 None:intergenic
GGTATCCGAGTCAAAACACT+TGG 0.631713 3_4:+53367268 None:intergenic
ATTAGGTGTTGGCACACGAA+GGG 0.632209 3_4:+53368446 None:intergenic
AAGCACAAGATTTCCATCAA+AGG 0.632662 3_4:-53370781 Msa0506700:CDS
AATTATGGTTGATGAATGAG+TGG 0.632974 3_4:+53370906 None:intergenic
TTGAGTTGGGAAAGAGTGAG+AGG 0.635785 3_4:+53370758 None:intergenic
AGCTGCTCAACTCGCAACCA+AGG 0.637355 3_4:-53370542 Msa0506700:intron
CATGGGAGATGATATGGTCA+AGG 0.639283 3_4:-53368232 Msa0506700:CDS
GCTTCTGGATGCTTCACACA+GGG 0.640300 3_4:-53368580 Msa0506700:CDS
CATTAGGTGTTGGCACACGA+AGG 0.643390 3_4:+53368445 None:intergenic
AGAAGCTAAAGCTGCATGGG+TGG 0.646501 3_4:+53370818 None:intergenic
ACAACCACACATTCCTACAC+AGG 0.647760 3_4:-53368880 Msa0506700:CDS
ATTGGATCAACTGCTGTGAG+GGG 0.655692 3_4:-53369982 Msa0506700:CDS
TGAGACAAACCCGTCCGATG+AGG 0.658525 3_4:-53367653 Msa0506700:CDS
CAGGGACTTGAGAAGAGCCA+GGG 0.658771 3_4:-53368562 Msa0506700:CDS
AAGAAAATTATGGTTGCTGG+GGG 0.660776 3_4:+53370972 None:intergenic
GATCCCTGCTAGAGACAACA+AGG 0.660973 3_4:+53369598 None:intergenic
CCATTGGATCAACTGCTGTG+AGG 0.662223 3_4:-53369984 Msa0506700:CDS
TCTTCGCAACATTCACCACA+AGG 0.675251 3_4:+53368409 None:intergenic
TCATATATCAGATATCAGAA+CGG 0.695479 3_4:+53367374 None:intergenic
TGGTGATTTCAGTCAAAGAG+TGG 0.700344 3_4:-53367755 Msa0506700:intron
GCTTGGTATGACAATGAATG+GGG 0.708873 3_4:-53368204 Msa0506700:CDS
GTAATTGTTGTCAATGACAG+TGG 0.716762 3_4:-53369859 Msa0506700:CDS
GGGAGATGATATGGTCAAGG+TGG 0.737175 3_4:-53368229 Msa0506700:CDS
ATTGTTGTCAATGACAGTGG+TGG 0.737380 3_4:-53369856 Msa0506700:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTTACAATGAAAATTA+TGG + chr3_4:53367438-53367457 None:intergenic 10.0%
!!! ACATATTTTATATATCTCAT+TGG - chr3_4:53367820-53367839 Msa0506700:intron 15.0%
!!! AAATAAATTCAATTTGCTTA+TGG - chr3_4:53368300-53368319 Msa0506700:CDS 15.0%
!! AATAATCTAAAAAGAACTTA+TGG - chr3_4:53370368-53370387 Msa0506700:intron 15.0%
!! ATCACTTTAATGATCTTTAA+GGG + chr3_4:53368240-53368259 None:intergenic 20.0%
!! TATCACTTTAATGATCTTTA+AGG + chr3_4:53368241-53368260 None:intergenic 20.0%
!! TTACAATTAAGTAACATCTT+TGG - chr3_4:53368261-53368280 Msa0506700:CDS 20.0%
!!! AAGTTAATGAATTTTTGTTC+AGG - chr3_4:53368931-53368950 Msa0506700:intron 20.0%
!!! AGTTAATGAATTTTTGTTCA+GGG - chr3_4:53368932-53368951 Msa0506700:intron 20.0%
!! AAGCTATTGGAAATAAATAA+TGG + chr3_4:53369539-53369558 None:intergenic 20.0%
!! TAACAAAAGGAAAAAACAAA+TGG + chr3_4:53370762-53370781 None:intergenic 20.0%
!! TATCATACGTAAATAACAAA+AGG + chr3_4:53370775-53370794 None:intergenic 20.0%
!! ACACAAAATTAGTAATTCAA+AGG - chr3_4:53370992-53371011 Msa0506700:five_prime_UTR 20.0%
!! AAAATTAGTAATTCAAAGGA+GGG - chr3_4:53370996-53371015 Msa0506700:five_prime_UTR 20.0%
! CTACAAGATAAGATAATGTT+TGG + chr3_4:53367297-53367316 None:intergenic 25.0%
! GATTGAGAGAAAGAAAATTA+TGG + chr3_4:53367367-53367386 None:intergenic 25.0%
! ATGTAACTAGAAAATAACCT+TGG + chr3_4:53367804-53367823 None:intergenic 25.0%
! TTTATGCGACATATAAAAGA+AGG + chr3_4:53367863-53367882 None:intergenic 25.0%
!!! TTTAAGAGAATGGCTTTAAA+AGG + chr3_4:53368216-53368235 None:intergenic 25.0%
!! ATGGTTTGCAAATTATAATC+AGG - chr3_4:53368319-53368338 Msa0506700:CDS 25.0%
!! ATTAGTTTCACTGAATTGAA+TGG - chr3_4:53368569-53368588 Msa0506700:CDS 25.0%
! TTGAAATATGATTCTATGCT+TGG - chr3_4:53368642-53368661 Msa0506700:intron 25.0%
! ATTCAAACATCATCAATTGT+AGG - chr3_4:53368802-53368821 Msa0506700:intron 25.0%
!! ATGCTTGTATTTTCATTTTG+TGG + chr3_4:53368828-53368847 None:intergenic 25.0%
! ATAGATCAAAGATGATTAAG+TGG + chr3_4:53369398-53369417 None:intergenic 25.0%
! TATATTTCCAGGAATTGTTA+AGG - chr3_4:53369415-53369434 Msa0506700:intron 25.0%
! ATATTTCCAGGAATTGTTAA+GGG - chr3_4:53369416-53369435 Msa0506700:intron 25.0%
!! ATGATGTTTGATAATATACC+TGG + chr3_4:53369475-53369494 None:intergenic 25.0%
! ATCAAACATCATATGTTTGT+TGG - chr3_4:53369483-53369502 Msa0506700:intron 25.0%
! ATGGATAAGAAGTTACAATA+AGG - chr3_4:53369582-53369601 Msa0506700:CDS 25.0%
! TCTATTTGTATATACTGGAA+TGG + chr3_4:53370215-53370234 None:intergenic 25.0%
! GATGTTCTATTTGTATATAC+TGG + chr3_4:53370220-53370239 None:intergenic 25.0%
!! GTTATTGATAGTTACAATGT+TGG - chr3_4:53370551-53370570 Msa0506700:CDS 25.0%
! AATGCAAAGTTTATGAATAG+AGG - chr3_4:53370696-53370715 Msa0506700:intron 25.0%
! TACCAAGTTAAATTTGTCTA+TGG - chr3_4:53370864-53370883 Msa0506700:five_prime_UTR 25.0%
! TCATATATCAGATATCAGAA+CGG + chr3_4:53370955-53370974 None:intergenic 25.0%
! CAAAATTAGTAATTCAAAGG+AGG - chr3_4:53370995-53371014 Msa0506700:five_prime_UTR 25.0%
AAAGAAAATTATGGTTGCTG+GGG + chr3_4:53367358-53367377 None:intergenic 30.0%
GAAAGAAAATTATGGTTGCT+GGG + chr3_4:53367359-53367378 None:intergenic 30.0%
AGAAAGAAAATTATGGTTGC+TGG + chr3_4:53367360-53367379 None:intergenic 30.0%
!! AATTATGGTTGATGAATGAG+TGG + chr3_4:53367423-53367442 None:intergenic 30.0%
ATGAAACAAAGCAATCATGA+AGG + chr3_4:53367630-53367649 None:intergenic 30.0%
TTGAATGTAATCACATGTGT+CGG - chr3_4:53367969-53367988 Msa0506700:intron 30.0%
! TCCAACATTTTATGGATGAA+GGG + chr3_4:53368143-53368162 None:intergenic 30.0%
! TTCCAACATTTTATGGATGA+AGG + chr3_4:53368144-53368163 None:intergenic 30.0%
! GTTATGGTTCCAACATTTTA+TGG + chr3_4:53368151-53368170 None:intergenic 30.0%
! CTTTAAGGGATTTAAGAGAA+TGG + chr3_4:53368226-53368245 None:intergenic 30.0%
TAAGTAACATCTTTGGTTAC+TGG - chr3_4:53368268-53368287 Msa0506700:CDS 30.0%
AAGTTAAAGGTAGCAATCAA+TGG - chr3_4:53368380-53368399 Msa0506700:CDS 30.0%
TTGACAACAATTACTTCAAG+TGG + chr3_4:53368461-53368480 None:intergenic 30.0%
AATGAGACTATTACAGTTGA+TGG - chr3_4:53368696-53368715 Msa0506700:intron 30.0%
TGAAAATACAAGCATGTGAT+TGG - chr3_4:53368833-53368852 Msa0506700:intron 30.0%
CATCTTTGATCTATATTTCC+AGG - chr3_4:53369404-53369423 Msa0506700:intron 30.0%
! ACTTCTTATCCATTTTCAGT+TGG + chr3_4:53369575-53369594 None:intergenic 30.0%
!! TTGTTAGGCTTGATTTGTTT+CGG + chr3_4:53369700-53369719 None:intergenic 30.0%
! CACAACTTTTAGACTTTGTT+AGG + chr3_4:53369715-53369734 None:intergenic 30.0%
GTCAATAGTTGAAGAAACAT+CGG + chr3_4:53370057-53370076 None:intergenic 30.0%
TGACACGAAACTTCATTATA+TGG + chr3_4:53370167-53370186 None:intergenic 30.0%
GTTTATCCTAAAAAGATGCA+TGG + chr3_4:53370242-53370261 None:intergenic 30.0%
ATAAACTTTGCATTCCTCAT+CGG + chr3_4:53370690-53370709 None:intergenic 30.0%
! AATGTGTTTTGTAATGTCTG+AGG - chr3_4:53370835-53370854 Msa0506700:exon 30.0%
! ATGTGTTTTGTAATGTCTGA+GGG - chr3_4:53370836-53370855 Msa0506700:exon 30.0%
GACCATAGACAAATTTAACT+TGG + chr3_4:53370869-53370888 None:intergenic 30.0%
! CTATGGTCAATAATGAGTTT+TGG - chr3_4:53370881-53370900 Msa0506700:five_prime_UTR 30.0%
AAAACACTTGGTATGAACTA+CGG + chr3_4:53371049-53371068 None:intergenic 30.0%
AAGAAAATTATGGTTGCTGG+GGG + chr3_4:53367357-53367376 None:intergenic 35.0%
!!! CAAAGAGTTGTTTTTCAGCT+TGG - chr3_4:53367467-53367486 Msa0506700:three_prime_UTR 35.0%
ATGGAAATCTTGTGCTTGTA+GGG + chr3_4:53367542-53367561 None:intergenic 35.0%
AAGCACAAGATTTCCATCAA+AGG - chr3_4:53367545-53367564 Msa0506700:three_prime_UTR 35.0%
TGCGACATATAAAAGAAGGA+TGG + chr3_4:53367859-53367878 None:intergenic 35.0%
TGTCGACAATGGTAATAGTT+TGG - chr3_4:53367934-53367953 Msa0506700:intron 35.0%
ACCCTTCATCCATAAAATGT+TGG - chr3_4:53368139-53368158 Msa0506700:intron 35.0%
GGAACCATAACATATTTGCA+TGG - chr3_4:53368160-53368179 Msa0506700:intron 35.0%
GCTTCCATGCAAATATGTTA+TGG + chr3_4:53368167-53368186 None:intergenic 35.0%
GCAAATTATAATCAGGCCAT+TGG - chr3_4:53368326-53368345 Msa0506700:CDS 35.0%
AGAGACTGTTGCTAAGTTAA+AGG - chr3_4:53368367-53368386 Msa0506700:CDS 35.0%
AAGGTAGCAATCAATGGTTT+CGG - chr3_4:53368386-53368405 Msa0506700:CDS 35.0%
GTAATTGTTGTCAATGACAG+TGG - chr3_4:53368467-53368486 Msa0506700:CDS 35.0%
!! TGTGTTGACTTAGTTTGCTT+TGG - chr3_4:53368534-53368553 Msa0506700:CDS 35.0%
! TCCTCTTGTTTCACATATTC+AGG - chr3_4:53368608-53368627 Msa0506700:intron 35.0%
TGGAATTGACATTGTCATTG+AGG - chr3_4:53368776-53368795 Msa0506700:intron 35.0%
! TGAATTTTTGTTCAGGGAAC+TGG - chr3_4:53368938-53368957 Msa0506700:intron 35.0%
AGCTGTGATGATAACTTTCT+TGG + chr3_4:53369011-53369030 None:intergenic 35.0%
GATATTCCAACTTACGTTGT+TGG - chr3_4:53369046-53369065 Msa0506700:CDS 35.0%
TTTACTCCAACAACGTAAGT+TGG + chr3_4:53369055-53369074 None:intergenic 35.0%
AAAGCCTTACCTTATGATGT+CGG + chr3_4:53369104-53369123 None:intergenic 35.0%
TTAAACTGTTTACCTCGTTG+TGG - chr3_4:53369129-53369148 Msa0506700:intron 35.0%
AAGATCCTGGATGAAGAATT+CGG - chr3_4:53369299-53369318 Msa0506700:CDS 35.0%
!!! AAGCTTGTTTTACTTATGCG+TGG - chr3_4:53369512-53369531 Msa0506700:intron 35.0%
AAGATTGACTAGGAAGCTAT+TGG + chr3_4:53369552-53369571 None:intergenic 35.0%
TTTCAGTTGGAAGATTGACT+AGG + chr3_4:53369562-53369581 None:intergenic 35.0%
GTCAATCTTCCAACTGAAAA+TGG - chr3_4:53369563-53369582 Msa0506700:CDS 35.0%
TAAAAGTTGTGTTTGTGCAG+AGG - chr3_4:53369724-53369743 Msa0506700:intron 35.0%
ACAACTGAAACATTAGGTGT+TGG + chr3_4:53369894-53369913 None:intergenic 35.0%
AGGTCAACAACTGAAACATT+AGG + chr3_4:53369900-53369919 None:intergenic 35.0%
ACATCCAATACACCTTTCAA+TGG + chr3_4:53369996-53370015 None:intergenic 35.0%
!! TATTGACTCTTCCTTGACTA+TGG - chr3_4:53370070-53370089 Msa0506700:intron 35.0%
TTGCTTGGTATGACAATGAA+TGG - chr3_4:53370120-53370139 Msa0506700:intron 35.0%
TGCTTGGTATGACAATGAAT+GGG - chr3_4:53370121-53370140 Msa0506700:intron 35.0%
! GAACATCCATGCATCTTTTT+AGG - chr3_4:53370233-53370252 Msa0506700:intron 35.0%
CACATCTAGTAGCAAACAAA+TGG - chr3_4:53370603-53370622 Msa0506700:CDS 35.0%
GTAATTCAAAGGAGGGAAAT+AGG - chr3_4:53371003-53371022 Msa0506700:five_prime_UTR 35.0%
CTTGGTTGCATCTATAGCTA+TGG - chr3_4:53367485-53367504 Msa0506700:three_prime_UTR 40.0%
TGTAGAAGCTAAAGCTGCAT+GGG + chr3_4:53367514-53367533 None:intergenic 40.0%
TTGTAGAAGCTAAAGCTGCA+TGG + chr3_4:53367515-53367534 None:intergenic 40.0%
GATGGAAATCTTGTGCTTGT+AGG + chr3_4:53367543-53367562 None:intergenic 40.0%
CTCTCTAGCATTACTAGCAT+AGG + chr3_4:53367744-53367763 None:intergenic 40.0%
!! GTCGTATTTGGTGTTTGTGT+CGG + chr3_4:53367907-53367926 None:intergenic 40.0%
CGACAAATCAGTGTCGTATT+TGG + chr3_4:53367919-53367938 None:intergenic 40.0%
! TGTCAAACACCGACATGTTT+TGG - chr3_4:53367992-53368011 Msa0506700:intron 40.0%
GTCTAGTGTCCAAAACATGT+CGG + chr3_4:53368004-53368023 None:intergenic 40.0%
ACACCTGTAATCTGAATCGT+CGG - chr3_4:53368024-53368043 Msa0506700:intron 40.0%
ATACCGACGATTCAGATTAC+AGG + chr3_4:53368030-53368049 None:intergenic 40.0%
AACATCTTTGGTTACTGGAC+TGG - chr3_4:53368273-53368292 Msa0506700:CDS 40.0%
GTAGAAATTTCCTGAGATGC+TGG - chr3_4:53368417-53368436 Msa0506700:CDS 40.0%
ATTGTTGTCAATGACAGTGG+TGG - chr3_4:53368470-53368489 Msa0506700:CDS 40.0%
GCCTGAATATGTGAAACAAG+AGG + chr3_4:53368612-53368631 None:intergenic 40.0%
GGAGTAAATGAGCAAGACTA+CGG - chr3_4:53369067-53369086 Msa0506700:CDS 40.0%
! TTATGATGTCGGCTACTTCA+TGG + chr3_4:53369093-53369112 None:intergenic 40.0%
ATGAAGTAGCCGACATCATA+AGG - chr3_4:53369092-53369111 Msa0506700:intron 40.0%
GATGTTGAGGTTGAGAACAA+GGG - chr3_4:53369151-53369170 Msa0506700:intron 40.0%
TCATCCAGGATCTTCACAAA+GGG + chr3_4:53369293-53369312 None:intergenic 40.0%
TTCATCCAGGATCTTCACAA+AGG + chr3_4:53369294-53369313 None:intergenic 40.0%
!! TGATTAAGTGGCTTTGAGCT+AGG + chr3_4:53369386-53369405 None:intergenic 40.0%
ATGGTTCCCTTAACAATTCC+TGG + chr3_4:53369425-53369444 None:intergenic 40.0%
TGTTTCAGTTGTTGACCTTG+TGG - chr3_4:53369902-53369921 Msa0506700:CDS 40.0%
TGTCAATGCAGCATTCAGAA+AGG - chr3_4:53369959-53369978 Msa0506700:CDS 40.0%
TCTTCCTTGACTATGGTCAT+GGG - chr3_4:53370077-53370096 Msa0506700:intron 40.0%
TATGGTCATGGGAGATGATA+TGG - chr3_4:53370088-53370107 Msa0506700:intron 40.0%
GCTTGGTATGACAATGAATG+GGG - chr3_4:53370122-53370141 Msa0506700:intron 40.0%
ATGACAATGAATGGGGTTAC+AGG - chr3_4:53370129-53370148 Msa0506700:intron 40.0%
! TCATCGTTTGAGGTCTGTTT+GGG + chr3_4:53370475-53370494 None:intergenic 40.0%
! TTCATCGTTTGAGGTCTGTT+TGG + chr3_4:53370476-53370495 None:intergenic 40.0%
TGGTGATTTCAGTCAAAGAG+TGG - chr3_4:53370571-53370590 Msa0506700:CDS 40.0%
TGATTTCAGTCAAAGAGTGG+TGG - chr3_4:53370574-53370593 Msa0506700:CDS 40.0%
!! AACAAATGGCTTGCTTGTAG+AGG + chr3_4:53370748-53370767 None:intergenic 40.0%
CTTGGTATGAACTACGGATT+AGG + chr3_4:53371043-53371062 None:intergenic 40.0%
AAAGAGTGAGAGGCCTTTGA+TGG + chr3_4:53367561-53367580 None:intergenic 45.0%
!! TTGAGTTGGGAAAGAGTGAG+AGG + chr3_4:53367571-53367590 None:intergenic 45.0%
!! CCTTTGAGGCACATTGAGTT+GGG + chr3_4:53367584-53367603 None:intergenic 45.0%
!! ACCTTTGAGGCACATTGAGT+TGG + chr3_4:53367585-53367604 None:intergenic 45.0%
CAGAGAGAGTGAAACCTTTG+AGG + chr3_4:53367598-53367617 None:intergenic 45.0%
CAAAGGTTTCACTCTCTCTG+TGG - chr3_4:53367598-53367617 Msa0506700:three_prime_UTR 45.0%
TTTGCTTGTGCAGAGACTTG+AGG - chr3_4:53367679-53367698 Msa0506700:CDS 45.0%
!! CGACACTGATTTGTCGACAA+TGG - chr3_4:53367923-53367942 Msa0506700:intron 45.0%
CATTGGATCAACTGCTGTGA+GGG - chr3_4:53368343-53368362 Msa0506700:CDS 45.0%
ATTGGATCAACTGCTGTGAG+GGG - chr3_4:53368344-53368363 Msa0506700:CDS 45.0%
ATCAATGGTTTCGGACGCAT+TGG - chr3_4:53368395-53368414 Msa0506700:CDS 45.0%
AATTTCCTGAGATGCTGGCA+CGG - chr3_4:53368422-53368441 Msa0506700:CDS 45.0%
CTGCTAGAGACAACAAGGAT+GGG + chr3_4:53368726-53368745 None:intergenic 45.0%
! CATCCTTGTTGTCTCTAGCA+GGG - chr3_4:53368725-53368744 Msa0506700:intron 45.0%
GGATCCTCTTAAGCTTCCTT+GGG - chr3_4:53368746-53368765 Msa0506700:intron 45.0%
TAACTTTCTTGGCACCTGCT+TGG + chr3_4:53369000-53369019 None:intergenic 45.0%
TATCATCACAGCTCCTGCAA+AGG - chr3_4:53369018-53369037 Msa0506700:intron 45.0%
ATCATCACAGCTCCTGCAAA+GGG - chr3_4:53369019-53369038 Msa0506700:intron 45.0%
GTAGCCGACATCATAAGGTA+AGG - chr3_4:53369097-53369116 Msa0506700:intron 45.0%
TTACCTCGTTGTGGATGTTG+AGG - chr3_4:53369138-53369157 Msa0506700:intron 45.0%
GGATGTTGAGGTTGAGAACA+AGG - chr3_4:53369150-53369169 Msa0506700:intron 45.0%
AAAGGGAGCAAGACAGTTTG+TGG + chr3_4:53369276-53369295 None:intergenic 45.0%
GCTTACCGAATTCTTCATCC+AGG + chr3_4:53369307-53369326 None:intergenic 45.0%
GTAGGAATGTGTGGTTGTCA+TGG + chr3_4:53369444-53369463 None:intergenic 45.0%
ACAACCACACATTCCTACAC+AGG - chr3_4:53369446-53369465 Msa0506700:intron 45.0%
ATATACCTGGTCTCCTGTGT+AGG + chr3_4:53369462-53369481 None:intergenic 45.0%
!! ATTAGGTGTTGGCACACGAA+GGG + chr3_4:53369883-53369902 None:intergenic 45.0%
TCTTCGCAACATTCACCACA+AGG + chr3_4:53369920-53369939 None:intergenic 45.0%
TGTGGTGAATGTTGCGAAGA+AGG - chr3_4:53369920-53369939 Msa0506700:CDS 45.0%
GTGGTGAATGTTGCGAAGAA+GGG - chr3_4:53369921-53369940 Msa0506700:CDS 45.0%
! GGGACCATTGAAAGGTGTAT+TGG - chr3_4:53369989-53370008 Msa0506700:intron 45.0%
TTGAAGAAACATCGGTGCAG+CGG + chr3_4:53370049-53370068 None:intergenic 45.0%
CTCTTCCTTGACTATGGTCA+TGG - chr3_4:53370076-53370095 Msa0506700:intron 45.0%
ATCTCCCATGACCATAGTCA+AGG + chr3_4:53370084-53370103 None:intergenic 45.0%
CATGGGAGATGATATGGTCA+AGG - chr3_4:53370094-53370113 Msa0506700:intron 45.0%
ATATGGTCAAGGTGGTTGCT+TGG - chr3_4:53370105-53370124 Msa0506700:intron 45.0%
GCAGCAACTTTCATCGTTTG+AGG + chr3_4:53370485-53370504 None:intergenic 45.0%
CAAACGATGAAAGTTGCTGC+TGG - chr3_4:53370485-53370504 Msa0506700:intron 45.0%
!! CAGTCAAAGAGTGGTGGATT+TGG - chr3_4:53370580-53370599 Msa0506700:CDS 45.0%
CTAGTAGCAAACAAATGGCC+AGG - chr3_4:53370608-53370627 Msa0506700:CDS 45.0%
ACTTTGCATTCCTCATCGGA+CGG + chr3_4:53370686-53370705 None:intergenic 45.0%
! TGGGGGAGTAATGGAATGAG+TGG + chr3_4:53367340-53367359 None:intergenic 50.0%
TATGGTTGCTGGGGGAGTAA+TGG + chr3_4:53367349-53367368 None:intergenic 50.0%
AGAAGCTAAAGCTGCATGGG+TGG + chr3_4:53367511-53367530 None:intergenic 50.0%
CCCAACTCAATGTGCCTCAA+AGG - chr3_4:53367581-53367600 Msa0506700:three_prime_UTR 50.0%
CTTGAGGTGGCTGAATTCAG+TGG - chr3_4:53367695-53367714 Msa0506700:CDS 50.0%
CCTCACAGCAGTTGATCCAA+TGG + chr3_4:53368345-53368364 None:intergenic 50.0%
CCATTGGATCAACTGCTGTG+AGG - chr3_4:53368342-53368361 Msa0506700:CDS 50.0%
CCTGCTAGAGACAACAAGGA+TGG + chr3_4:53368727-53368746 None:intergenic 50.0%
! CCATCCTTGTTGTCTCTAGC+AGG - chr3_4:53368724-53368743 Msa0506700:intron 50.0%
GATCCCTGCTAGAGACAACA+AGG + chr3_4:53368731-53368750 None:intergenic 50.0%
GGGATCCTCTTAAGCTTCCT+TGG - chr3_4:53368745-53368764 Msa0506700:intron 50.0%
TCAGCCCAAGGAAGCTTAAG+AGG + chr3_4:53368753-53368772 None:intergenic 50.0%
TCAATTCCAAGCTCAGCCCA+AGG + chr3_4:53368765-53368784 None:intergenic 50.0%
! TCAGGGAACTGGAGTGTTTG+TGG - chr3_4:53368949-53368968 Msa0506700:intron 50.0%
! GGAACTGGAGTGTTTGTGGA+TGG - chr3_4:53368953-53368972 Msa0506700:intron 50.0%
ACCTGCTTGGATGTGCTTTC+CGG + chr3_4:53368987-53369006 None:intergenic 50.0%
CAACCTCAACATCCACAACG+AGG + chr3_4:53369144-53369163 None:intergenic 50.0%
TGCTCCCTTTGTGAAGATCC+TGG - chr3_4:53369286-53369305 Msa0506700:CDS 50.0%
GTCTCCTGTGTAGGAATGTG+TGG + chr3_4:53369453-53369472 None:intergenic 50.0%
ACATTCCTACACAGGAGACC+AGG - chr3_4:53369454-53369473 Msa0506700:intron 50.0%
TGTGTTTGTGCAGAGGCTTC+TGG - chr3_4:53369731-53369750 Msa0506700:intron 50.0%
GCTTCTGGATGCTTCACACA+GGG - chr3_4:53369746-53369765 Msa0506700:intron 50.0%
TTGAGCTTTCCCTTGAGCTG+TGG + chr3_4:53369852-53369871 None:intergenic 50.0%
CAGCTCAAGGGAAAGCTCAA+CGG - chr3_4:53369852-53369871 Msa0506700:CDS 50.0%
!! CATTAGGTGTTGGCACACGA+AGG + chr3_4:53369884-53369903 None:intergenic 50.0%
AGCATTCAGAAAGGCAGCTG+AGG - chr3_4:53369968-53369987 Msa0506700:CDS 50.0%
GCATTCAGAAAGGCAGCTGA+GGG - chr3_4:53369969-53369988 Msa0506700:CDS 50.0%
CGGAAGTCAACAGACACAAG+TGG + chr3_4:53370029-53370048 None:intergenic 50.0%
GGGAGATGATATGGTCAAGG+TGG - chr3_4:53370097-53370116 Msa0506700:intron 50.0%
ATCTCCACTTCCTGCTTGAG+GGG + chr3_4:53370636-53370655 None:intergenic 50.0%
GATCTCCACTTCCTGCTTGA+GGG + chr3_4:53370637-53370656 None:intergenic 50.0%
AGCAGGAAGTGGAGATCCAT+TGG - chr3_4:53370640-53370659 Msa0506700:intron 50.0%
AGGAAGTGGAGATCCATTGG+AGG - chr3_4:53370643-53370662 Msa0506700:intron 50.0%
GTCTCACAGAAGTCCTCCAA+TGG + chr3_4:53370659-53370678 None:intergenic 50.0%
CTTTGCATTCCTCATCGGAC+GGG + chr3_4:53370685-53370704 None:intergenic 50.0%
GCTTGTGCAGAGACTTGAGG+TGG - chr3_4:53367682-53367701 Msa0506700:CDS 55.0%
AGCTGCTCAACTCGCAACCA+AGG - chr3_4:53367784-53367803 Msa0506700:intron 55.0%
AAGCTTCCTTGGGCTGAGCT+TGG - chr3_4:53368756-53368775 Msa0506700:intron 55.0%
GGAATATCAGCGCCCTTTGC+AGG + chr3_4:53369034-53369053 None:intergenic 55.0%
GGCTTCTGGATGCTTCACAC+AGG - chr3_4:53369745-53369764 Msa0506700:intron 55.0%
ACAGGGACTTGAGAAGAGCC+AGG - chr3_4:53369763-53369782 Msa0506700:intron 55.0%
CAGGGACTTGAGAAGAGCCA+GGG - chr3_4:53369764-53369783 Msa0506700:intron 55.0%
AACATTGTCCCCACCAGCAC+AGG - chr3_4:53369798-53369817 Msa0506700:intron 55.0%
CAGCACTAGAGAGACAGCCT+TGG + chr3_4:53369829-53369848 None:intergenic 55.0%
TCTAGTGCTGCCACAGCTCA+AGG - chr3_4:53369839-53369858 Msa0506700:intron 55.0%
CTAGTGCTGCCACAGCTCAA+GGG - chr3_4:53369840-53369859 Msa0506700:intron 55.0%
GCAGCTGAGGGACCATTGAA+AGG - chr3_4:53369981-53370000 Msa0506700:CDS 55.0%
GGATCTCCACTTCCTGCTTG+AGG + chr3_4:53370638-53370657 None:intergenic 55.0%
TGAGACAAACCCGTCCGATG+AGG - chr3_4:53370673-53370692 Msa0506700:intron 55.0%
TTCGACCGTGCCAGCATCTC+AGG + chr3_4:53368430-53368449 None:intergenic 60.0%
GAGATGCTGGCACGGTCGAA+AGG - chr3_4:53368430-53368449 Msa0506700:CDS 60.0%
! GGAGTGTTTGTGGATGGCCC+TGG - chr3_4:53368959-53368978 Msa0506700:intron 60.0%
TTTGTGGATGGCCCTGGAGC+CGG - chr3_4:53368965-53368984 Msa0506700:intron 60.0%
GGATGTGCTTTCCGGCTCCA+GGG + chr3_4:53368979-53368998 None:intergenic 60.0%
TGGATGTGCTTTCCGGCTCC+AGG + chr3_4:53368980-53368999 None:intergenic 60.0%
! GCCGGAAAGCACATCCAAGC+AGG - chr3_4:53368983-53369002 Msa0506700:intron 60.0%
AATGTTCAGCGCTGCAGCCC+TGG + chr3_4:53369784-53369803 None:intergenic 60.0%
! TTGGCTGCTCCTGTGCTGGT+GGG + chr3_4:53369810-53369829 None:intergenic 60.0%
! TGGCTGCTCCTGTGCTGGTG+GGG + chr3_4:53369809-53369828 None:intergenic 65.0%
CTTGGCTGCTCCTGTGCTGG+TGG + chr3_4:53369811-53369830 None:intergenic 65.0%
CACCAGCACAGGAGCAGCCA+AGG - chr3_4:53369809-53369828 Msa0506700:intron 65.0%
AGCCTTGGCTGCTCCTGTGC+TGG + chr3_4:53369814-53369833 None:intergenic 65.0%
!! CTTCCTGCTTGAGGGGTGCC+TGG + chr3_4:53370629-53370648 None:intergenic 65.0%
GGCACCCCTCAAGCAGGAAG+TGG - chr3_4:53370629-53370648 Msa0506700:CDS 65.0%
TGGCCAGGCACCCCTCAAGC+AGG - chr3_4:53370623-53370642 Msa0506700:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 53367278 53371070 53367278 ID=Msa0506700;Name=Msa0506700
chr3_4 mRNA 53367278 53371070 53367278 ID=Msa0506700-mRNA-1;Parent=Msa0506700;Name=Msa0506700-mRNA-1;_AED=0.06;_eAED=0.06;_QI=226|1|1|1|1|1|9|355|451
chr3_4 exon 53367278 53367765 53367278 ID=Msa0506700-mRNA-1:exon:11816;Parent=Msa0506700-mRNA-1
chr3_4 exon 53368198 53368604 53368198 ID=Msa0506700-mRNA-1:exon:11815;Parent=Msa0506700-mRNA-1
chr3_4 exon 53368873 53368922 53368873 ID=Msa0506700-mRNA-1:exon:11814;Parent=Msa0506700-mRNA-1
chr3_4 exon 53369028 53369089 53369028 ID=Msa0506700-mRNA-1:exon:11813;Parent=Msa0506700-mRNA-1
chr3_4 exon 53369235 53369395 53369235 ID=Msa0506700-mRNA-1:exon:11812;Parent=Msa0506700-mRNA-1
chr3_4 exon 53369551 53369718 53369551 ID=Msa0506700-mRNA-1:exon:11811;Parent=Msa0506700-mRNA-1
chr3_4 exon 53369846 53370007 53369846 ID=Msa0506700-mRNA-1:exon:11810;Parent=Msa0506700-mRNA-1
chr3_4 exon 53370543 53370656 53370543 ID=Msa0506700-mRNA-1:exon:11809;Parent=Msa0506700-mRNA-1
chr3_4 exon 53370746 53371070 53370746 ID=Msa0506700-mRNA-1:exon:11808;Parent=Msa0506700-mRNA-1
chr3_4 five_prime_UTR 53370845 53371070 53370845 ID=Msa0506700-mRNA-1:five_prime_utr;Parent=Msa0506700-mRNA-1
chr3_4 CDS 53370746 53370844 53370746 ID=Msa0506700-mRNA-1:cds;Parent=Msa0506700-mRNA-1
chr3_4 CDS 53370543 53370656 53370543 ID=Msa0506700-mRNA-1:cds;Parent=Msa0506700-mRNA-1
chr3_4 CDS 53369846 53370007 53369846 ID=Msa0506700-mRNA-1:cds;Parent=Msa0506700-mRNA-1
chr3_4 CDS 53369551 53369718 53369551 ID=Msa0506700-mRNA-1:cds;Parent=Msa0506700-mRNA-1
chr3_4 CDS 53369235 53369395 53369235 ID=Msa0506700-mRNA-1:cds;Parent=Msa0506700-mRNA-1
chr3_4 CDS 53369028 53369089 53369028 ID=Msa0506700-mRNA-1:cds;Parent=Msa0506700-mRNA-1
chr3_4 CDS 53368873 53368922 53368873 ID=Msa0506700-mRNA-1:cds;Parent=Msa0506700-mRNA-1
chr3_4 CDS 53368198 53368604 53368198 ID=Msa0506700-mRNA-1:cds;Parent=Msa0506700-mRNA-1
chr3_4 CDS 53367633 53367765 53367633 ID=Msa0506700-mRNA-1:cds;Parent=Msa0506700-mRNA-1
chr3_4 three_prime_UTR 53367278 53367632 53367278 ID=Msa0506700-mRNA-1:three_prime_utr;Parent=Msa0506700-mRNA-1
Gene Sequence

>Msa0506700

ATGGCCACCCATGCAGCTTTAGCTTCTACAAGAATCCCTACAAGCACAAGATTTCCATCAAAGGCCTCTCACTCTTTCCCAACTCAATGTGCCTCAAAGAGACTTGAGGTGGCTGAATTCAGTGGACTAAAATCAACTTCATGCATTACCTATGCTAGTAATGCTAGAGAGTCTTCTTTTTCTGATGTTGTAGCTGCTCAACTCGCAACCAAGGCCATTGGATCAACTGCTGTGAGGGGAGAGACTGTTGCTAAGTTAAAGGTAGCAATCAATGGTTTCGGACGCATTGGTAGAAATTTCCTGAGATGCTGGCACGGTCGAAAGGACTCGCCACTTGAAGTAATTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACTTGTTGAAATATGATTCTATGCTTGGAACATTTAAAGCAGATGTGAAAATACTAAACAATGAGACTATTACAGTTGATGGTAAGCCCATCCTTGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCTTGGGCTGAGCTTGGAATTGACATTGTCATTGAGGGAACTGGAGTGTTTGTGGATGGCCCTGGAGCCGGAAAGCACATCCAAGCAGGTGCCAAGAAAGTTATCATCACAGCTCCTGCAAAGGGCGCTGATATTCCAACTTACGTTGTTGGAGTAAATGAGCAAGACTACGGCCATGAAGTAGCCGACATCATAAGCAATGCTTCTTGCACCACAAACTGTCTTGCTCCCTTTGTGAAGATCCTGGATGAAGAATTCGGAATTGTTAAGGGAACCATGACAACCACACATTCCTACACAGGAGACCAGAGGCTTCTGGATGCTTCACACAGGGACTTGAGAAGAGCCAGGGCTGCAGCGCTGAACATTGTCCCCACCAGCACAGGAGCAGCCAAGGCTGTCTCTCTAGTGCTGCCACAGCTCAAGGGAAAGCTCAACGGAATCGCCCTTCGTGTGCCAACACCTAATGTTTCAGTTGTTGACCTTGTGGTGAATGTTGCGAAGAAGGGTATTTCAGCTGAAGATGTCAATGCAGCATTCAGAAAGGCAGCTGAGGGACCATTGAAAGGTGTATTGGATGTCTGTGATGTTCCACTTGTGTCTGTTGACTTCCGCTGCACCGATGTTTCTTCAACTATTGACTCTTCCTTGACTATGGTCATGGGAGATGATATGGTCAAGGTGGTTGCTTGGTATGACAATGAATGGGGTTACAGTCAAAGAGTGGTGGATTTGGCACATCTAGTAGCAAACAAATGGCCAGGCACCCCTCAAGCAGGAAGTGGAGATCCATTGGAGGACTTCTGTGAGACAAACCCGTCCGATGAGGAATGCAAAGTTTATGAATAG

Protein sequence

>Msa0506700

MATHAALASTRIPTSTRFPSKASHSFPTQCASKRLEVAEFSGLKSTSCITYASNARESSFSDVVAAQLATKAIGSTAVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKADVKILNNETITVDGKPILVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEQDYGHEVADIISNASCTTNCLAPFVKILDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGVLDVCDVPLVSVDFRCTDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKWPGTPQAGSGDPLEDFCETNPSDEECKVYE*