AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0386230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386230 MtrunA17_Chr3g0144151 99.335 451 3 0 1 451 1 451 0.0 917
Msa0386230 MtrunA17_Chr7g0252641 74.742 388 90 5 38 422 21 403 0.0 527
Msa0386230 MtrunA17_Chr2g0310421 45.346 419 212 10 1 414 1 407 4.48e-108 326
Msa0386230 MtrunA17_Chr4g0057861 48.680 341 166 7 84 421 4 338 9.07e-101 304
Msa0386230 MtrunA17_Chr6g0458861 47.214 341 171 7 83 420 1 335 4.04e-100 303
Msa0386230 MtrunA17_Chr3g0122971 47.432 331 148 8 85 414 6 311 6.83e-95 288
Msa0386230 MtrunA17_Chr8g0357071 44.314 255 123 8 166 407 59 307 8.14e-57 190
Msa0386230 MtrunA17_Chr8g0360951 44.898 147 70 3 262 407 1 137 1.02e-29 112
Msa0386230 MtrunA17_Chr7g0235831 77.941 68 8 1 167 234 28 88 4.87e-28 106
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386230 AT1G42970.1 84.989 453 60 3 1 451 1 447 0.0 767
Msa0386230 AT1G12900.5 75.325 385 92 3 38 422 59 440 0.0 543
Msa0386230 AT1G12900.1 75.325 385 92 3 38 422 17 398 0.0 541
Msa0386230 AT3G26650.1 75.969 387 85 6 39 422 14 395 0.0 534
Msa0386230 AT1G12900.3 81.395 344 61 3 79 422 9 349 0.0 522
Msa0386230 AT1G12900.4 81.395 344 61 3 79 422 9 349 0.0 522
Msa0386230 AT1G12900.2 85.600 250 33 3 173 422 70 316 9.39e-134 388
Msa0386230 AT1G79530.1 51.603 343 158 6 79 419 80 416 1.21e-111 335
Msa0386230 AT1G16300.1 44.988 409 202 9 28 419 12 414 4.27e-108 326
Msa0386230 AT3G04120.1 48.348 333 163 7 85 414 5 331 1.38e-100 304
Msa0386230 AT1G13440.1 47.447 333 166 7 85 414 5 331 6.57e-100 302
Msa0386230 AT1G13440.2 42.943 333 153 7 85 414 5 303 1.41e-81 254

Find 163 sgRNAs with CRISPR-Local

Find 247 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATTTACAATGAAAATTA+TGG 0.211608 3_1:+90016584 None:intergenic
CAGTCAAAGAGTGGTGGATT+TGG 0.255900 3_1:-90013427 Msa0386230:CDS
TGTGTTTGTGCAGAGGCTTC+TGG 0.276840 3_1:-90014276 Msa0386230:intron
AGAGACTGTTGCTAAGTTAA+AGG 0.296898 3_1:-90015652 Msa0386230:CDS
GTAATTCAAAGGAGGGAAAT+AGG 0.299529 3_1:-90013002 Msa0386230:three_prime_UTR
CTTCCTGCTTGAGGGGTGCC+TGG 0.319194 3_1:+90013381 None:intergenic
GATTGAGAGAAAGAAAATTA+TGG 0.320609 3_1:+90016655 None:intergenic
TTGAAATATGATTCTATGCT+TGG 0.332977 3_1:-90015377 Msa0386230:CDS
TACCAAGTTAAATTTGTCTA+TGG 0.345528 3_1:-90013143 Msa0386230:three_prime_UTR
AGCTGTGATGATAACTTTCT+TGG 0.347115 3_1:+90014999 None:intergenic
GGGATCCTCTTAAGCTTCCT+TGG 0.348148 3_1:-90015274 Msa0386230:CDS
ATGACAATGAATGGGGTTAC+AGG 0.348712 3_1:-90013878 Msa0386230:intron
AATGAGACTATTACAGTTGA+TGG 0.355152 3_1:-90015323 Msa0386230:CDS
GGAATATCAGCGCCCTTTGC+AGG 0.358017 3_1:+90014976 None:intergenic
AGCCTTGGCTGCTCCTGTGC+TGG 0.378441 3_1:+90014196 None:intergenic
AATGTTCAGCGCTGCAGCCC+TGG 0.380674 3_1:+90014226 None:intergenic
TATATTTCCAGGAATTGTTA+AGG 0.381383 3_1:-90014592 Msa0386230:intron
AGAAAGAAAATTATGGTTGC+TGG 0.384862 3_1:+90016662 None:intergenic
TATTGACTCTTCCTTGACTA+TGG 0.388165 3_1:-90013937 Msa0386230:CDS
CTTGGTATGAACTACGGATT+AGG 0.388847 3_1:+90012965 None:intergenic
TTCGACCGTGCCAGCATCTC+AGG 0.393236 3_1:+90015592 None:intergenic
CTACAAGATAAGATAATGTT+TGG 0.397031 3_1:+90016725 None:intergenic
GATCTCCACTTCCTGCTTGA+GGG 0.403676 3_1:+90013373 None:intergenic
TGCTCCCTTTGTGAAGATCC+TGG 0.407466 3_1:-90014721 Msa0386230:CDS
GATATTCCAACTTACGTTGT+TGG 0.408355 3_1:-90014961 Msa0386230:CDS
GATGGAAATCTTGTGCTTGT+AGG 0.410234 3_1:+90016479 None:intergenic
GCAAATTATAATCAGGCCAT+TGG 0.410743 3_1:-90015693 Msa0386230:intron
CTATGGTCAATAATGAGTTT+TGG 0.416744 3_1:-90013126 Msa0386230:three_prime_UTR
TATGGTCATGGGAGATGATA+TGG 0.417158 3_1:-90013919 Msa0386230:CDS
ATATTTCCAGGAATTGTTAA+GGG 0.418720 3_1:-90014591 Msa0386230:intron
CCTTTGAGGCACATTGAGTT+GGG 0.421860 3_1:+90016438 None:intergenic
CTCTTCCTTGACTATGGTCA+TGG 0.425322 3_1:-90013931 Msa0386230:CDS
GGATCCTCTTAAGCTTCCTT+GGG 0.426766 3_1:-90015273 Msa0386230:CDS
TTATGATGTCGGCTACTTCA+TGG 0.429613 3_1:+90014917 None:intergenic
TCAGGGAACTGGAGTGTTTG+TGG 0.437834 3_1:-90015058 Msa0386230:intron
CTTGGCTGCTCCTGTGCTGG+TGG 0.441233 3_1:+90014199 None:intergenic
AATGCAAAGTTTATGAATAG+AGG 0.442277 3_1:-90013311 Msa0386230:exon
AGGTCAACAACTGAAACATT+AGG 0.444204 3_1:+90014110 None:intergenic
AAGCTTCCTTGGGCTGAGCT+TGG 0.444289 3_1:-90015263 Msa0386230:CDS
CCATCCTTGTTGTCTCTAGC+AGG 0.444814 3_1:-90015295 Msa0386230:CDS
ATGAAGTAGCCGACATCATA+AGG 0.446117 3_1:-90014915 Msa0386230:intron
TCAGCCCAAGGAAGCTTAAG+AGG 0.447395 3_1:+90015269 None:intergenic
TTTACTCCAACAACGTAAGT+TGG 0.460656 3_1:+90014955 None:intergenic
AAGATCCTGGATGAAGAATT+CGG 0.462539 3_1:-90014708 Msa0386230:intron
TTGGCTGCTCCTGTGCTGGT+GGG 0.463193 3_1:+90014200 None:intergenic
AAAGAGTGAGAGGCCTTTGA+TGG 0.466577 3_1:+90016461 None:intergenic
AAGGTAGCAATCAATGGTTT+CGG 0.472649 3_1:-90015633 Msa0386230:CDS
GGATCTCCACTTCCTGCTTG+AGG 0.477471 3_1:+90013372 None:intergenic
ACCTTTGAGGCACATTGAGT+TGG 0.481118 3_1:+90016437 None:intergenic
AAGTTAAAGGTAGCAATCAA+TGG 0.481757 3_1:-90015639 Msa0386230:CDS
CACCAGCACAGGAGCAGCCA+AGG 0.482178 3_1:-90014198 Msa0386230:CDS
CCCAACTCAATGTGCCTCAA+AGG 0.482556 3_1:-90016438 Msa0386230:intron
TCTAGTGCTGCCACAGCTCA+AGG 0.485246 3_1:-90014168 Msa0386230:CDS
ATGGAAATCTTGTGCTTGTA+GGG 0.485305 3_1:+90016480 None:intergenic
TTGCTTGGTATGACAATGAA+TGG 0.485506 3_1:-90013887 Msa0386230:CDS
CATTGGATCAACTGCTGTGA+GGG 0.487373 3_1:-90015676 Msa0386230:CDS
GAAAGAAAATTATGGTTGCT+GGG 0.488781 3_1:+90016663 None:intergenic
GGCACCCCTCAAGCAGGAAG+TGG 0.490466 3_1:-90013378 Msa0386230:CDS
TAACTTTCTTGGCACCTGCT+TGG 0.490883 3_1:+90015010 None:intergenic
ATCAATGGTTTCGGACGCAT+TGG 0.494136 3_1:-90015624 Msa0386230:CDS
CAGAGAGAGTGAAACCTTTG+AGG 0.495920 3_1:+90016424 None:intergenic
GTAGAAATTTCCTGAGATGC+TGG 0.496100 3_1:-90015602 Msa0386230:CDS
AAAGGGAGCAAGACAGTTTG+TGG 0.498610 3_1:+90014734 None:intergenic
CACATCTAGTAGCAAACAAA+TGG 0.498642 3_1:-90013404 Msa0386230:CDS
AGCAGGAAGTGGAGATCCAT+TGG 0.500903 3_1:-90013367 Msa0386230:CDS
TGGAATTGACATTGTCATTG+AGG 0.500940 3_1:-90015243 Msa0386230:intron
TGCTTGGTATGACAATGAAT+GGG 0.502219 3_1:-90013886 Msa0386230:CDS
GACCATAGACAAATTTAACT+TGG 0.506329 3_1:+90013141 None:intergenic
TGGCTGCTCCTGTGCTGGTG+GGG 0.506396 3_1:+90014201 None:intergenic
GCTTACCGAATTCTTCATCC+AGG 0.508541 3_1:+90014703 None:intergenic
TTGACAACAATTACTTCAAG+TGG 0.510208 3_1:+90015561 None:intergenic
TATCATACGTAAATAACAAA+AGG 0.515255 3_1:+90013235 None:intergenic
GGGACCATTGAAAGGTGTAT+TGG 0.515641 3_1:-90014018 Msa0386230:CDS
TCATCCAGGATCTTCACAAA+GGG 0.515849 3_1:+90014717 None:intergenic
GGAGTGTTTGTGGATGGCCC+TGG 0.517318 3_1:-90015048 Msa0386230:CDS
GAGATGCTGGCACGGTCGAA+AGG 0.519276 3_1:-90015589 Msa0386230:CDS
ATCATCACAGCTCCTGCAAA+GGG 0.520327 3_1:-90014988 Msa0386230:CDS
AACATTGTCCCCACCAGCAC+AGG 0.520340 3_1:-90014209 Msa0386230:CDS
ATCTCCACTTCCTGCTTGAG+GGG 0.526358 3_1:+90013374 None:intergenic
TTTGTGGATGGCCCTGGAGC+CGG 0.533936 3_1:-90015042 Msa0386230:CDS
TGTGGTGAATGTTGCGAAGA+AGG 0.537700 3_1:-90014087 Msa0386230:CDS
TTTGCTTGTGCAGAGACTTG+AGG 0.537829 3_1:-90016340 Msa0386230:intron
GTCTCCTGTGTAGGAATGTG+TGG 0.543087 3_1:+90014557 None:intergenic
TTGTAGAAGCTAAAGCTGCA+TGG 0.544120 3_1:+90016507 None:intergenic
ACAGGGACTTGAGAAGAGCC+AGG 0.544310 3_1:-90014244 Msa0386230:CDS
GCCGGAAAACACATCCAAGC+AGG 0.544506 3_1:-90015024 Msa0386230:CDS
ATAAACTTTGCATTCCTCAT+CGG 0.548279 3_1:+90013320 None:intergenic
CCTCACAGCAGTTGATCCAA+TGG 0.549314 3_1:+90015677 None:intergenic
CTTGGTTGCATCTATAGCTA+TGG 0.550615 3_1:-90016534 Msa0386230:exon
AGTTCAATGATCAGAATACA+TGG 0.552685 3_1:-90016752 None:intergenic
TGGCCAGGCACCCCTCAAGC+AGG 0.555510 3_1:-90013384 Msa0386230:CDS
TGTAGAAGCTAAAGCTGCAT+GGG 0.556274 3_1:+90016508 None:intergenic
CTTTGCATTCCTCATCGGAC+GGG 0.556540 3_1:+90013325 None:intergenic
CAAAATTAGTAATTCAAAGG+AGG 0.559960 3_1:-90013010 Msa0386230:three_prime_UTR
TGTTTCAGTTGTTGACCTTG+TGG 0.563274 3_1:-90014105 Msa0386230:CDS
ACACAAAATTAGTAATTCAA+AGG 0.565649 3_1:-90013013 Msa0386230:three_prime_UTR
AAAGCCTTACCTTATGATGT+CGG 0.566701 3_1:+90014906 None:intergenic
CTCTCTAGCATTACTAGCAT+AGG 0.567423 3_1:+90016278 None:intergenic
TATCATCACAGCTCCTGCAA+AGG 0.567484 3_1:-90014989 Msa0386230:CDS
AACAAATGGCTTGCTTGTAG+AGG 0.570902 3_1:+90013262 None:intergenic
ATATGGTCAAGGTGGTTGCT+TGG 0.572598 3_1:-90013902 Msa0386230:CDS
GTAGGAATGTGTGGTTGTCA+TGG 0.573317 3_1:+90014566 None:intergenic
ACATCCAATACACCTTTCAA+TGG 0.575028 3_1:+90014014 None:intergenic
GTCTCACAGAAGTCCTCCAA+TGG 0.575066 3_1:+90013351 None:intergenic
CCTGCTAGAGACAACAAGGA+TGG 0.575224 3_1:+90015295 None:intergenic
CATCCTTGTTGTCTCTAGCA+GGG 0.575538 3_1:-90015294 Msa0386230:CDS
TTGAGCTTTCCCTTGAGCTG+TGG 0.576142 3_1:+90014158 None:intergenic
AAAACACTTGGTATGAACTA+CGG 0.577010 3_1:+90012959 None:intergenic
GCTTGTGCAGAGACTTGAGG+TGG 0.577189 3_1:-90016337 Msa0386230:intron
GGAGTAAATGAGCAAGACTA+CGG 0.579497 3_1:-90014940 Msa0386230:CDS
GGCTTCTGGATGCTTCACAC+AGG 0.580102 3_1:-90014262 Msa0386230:CDS
ATATACCTGGTCTCCTGTGT+AGG 0.580151 3_1:+90014548 None:intergenic
CTAGTAGCAAACAAATGGCC+AGG 0.581197 3_1:-90013399 Msa0386230:CDS
AGCATTCAGAAAGGCAGCTG+AGG 0.582409 3_1:-90014039 Msa0386230:CDS
TGATTTCAGTCAAAGAGTGG+TGG 0.586479 3_1:-90013433 Msa0386230:intron
CTTGAGGTGGCTGAATTCAG+TGG 0.586722 3_1:-90016324 Msa0386230:CDS
AAAATTAGTAATTCAAAGGA+GGG 0.587504 3_1:-90013009 Msa0386230:three_prime_UTR
ACATTCCTACACAGGAGACC+AGG 0.591972 3_1:-90014553 Msa0386230:intron
CTGCTAGAGACAACAAGGAT+GGG 0.592139 3_1:+90015296 None:intergenic
AAAGAAAATTATGGTTGCTG+GGG 0.594470 3_1:+90016664 None:intergenic
TTCATCCAGGATCTTCACAA+AGG 0.595211 3_1:+90014716 None:intergenic
GCAGCTGAGGGACCATTGAA+AGG 0.596252 3_1:-90014026 Msa0386230:CDS
GTCAATAGTTGAAGAAACAT+CGG 0.596396 3_1:+90013953 None:intergenic
GGAACTGGAGTGTTTGTGGA+TGG 0.597007 3_1:-90015054 Msa0386230:CDS
ACTTTGCATTCCTCATCGGA+CGG 0.598687 3_1:+90013324 None:intergenic
GCATTCAGAAAGGCAGCTGA+GGG 0.599413 3_1:-90014038 Msa0386230:CDS
TGTCAATGCAGCATTCAGAA+AGG 0.602285 3_1:-90014048 Msa0386230:CDS
TCTTCCTTGACTATGGTCAT+GGG 0.605006 3_1:-90013930 Msa0386230:CDS
CTAGTGCTGCCACAGCTCAA+GGG 0.606922 3_1:-90014167 Msa0386230:CDS
AGGAAGTGGAGATCCATTGG+AGG 0.613281 3_1:-90013364 Msa0386230:CDS
GTGGTGAATGTTGCGAAGAA+GGG 0.613677 3_1:-90014086 Msa0386230:CDS
CAGCTCAAGGGAAAGCTCAA+CGG 0.614061 3_1:-90014155 Msa0386230:CDS
ATCTCCCATGACCATAGTCA+AGG 0.618363 3_1:+90013926 None:intergenic
ACAACTGAAACATTAGGTGT+TGG 0.619133 3_1:+90014116 None:intergenic
TTGAAGAAACATCGGTGCAG+CGG 0.621950 3_1:+90013961 None:intergenic
AATTTCCTGAGATGCTGGCA+CGG 0.622607 3_1:-90015597 Msa0386230:CDS
CAGCACTAGAGAGACAGCCT+TGG 0.622925 3_1:+90014181 None:intergenic
CGGAAGTCAACAGACACAAG+TGG 0.626646 3_1:+90013981 None:intergenic
TCAATTCCAAGCTCAGCCCA+AGG 0.629195 3_1:+90015257 None:intergenic
GGTATCCGAGTCAAAACACT+TGG 0.631713 3_1:+90012947 None:intergenic
ATTAGGTGTTGGCACACGAA+GGG 0.632209 3_1:+90014127 None:intergenic
AAGCACAAGATTTCCATCAA+AGG 0.632662 3_1:-90016474 Msa0386230:CDS
AATTATGGTTGATGAATGAG+TGG 0.632974 3_1:+90016599 None:intergenic
TTGAGTTGGGAAAGAGTGAG+AGG 0.635785 3_1:+90016451 None:intergenic
AGCTGCTCAACTCGCAACCA+AGG 0.637355 3_1:-90016235 Msa0386230:intron
CATGGGAGATGATATGGTCA+AGG 0.639283 3_1:-90013913 Msa0386230:CDS
GCTTCTGGATGCTTCACACA+GGG 0.640300 3_1:-90014261 Msa0386230:CDS
CATTAGGTGTTGGCACACGA+AGG 0.643390 3_1:+90014126 None:intergenic
AGAAGCTAAAGCTGCATGGG+TGG 0.646501 3_1:+90016511 None:intergenic
ACAACCACACATTCCTACAC+AGG 0.647760 3_1:-90014561 Msa0386230:CDS
ATTGGATCAACTGCTGTGAG+GGG 0.655692 3_1:-90015675 Msa0386230:CDS
TGAGACAAACCCGTCCGATG+AGG 0.658525 3_1:-90013334 Msa0386230:CDS
CAGGGACTTGAGAAGAGCCA+GGG 0.658771 3_1:-90014243 Msa0386230:CDS
AAGAAAATTATGGTTGCTGG+GGG 0.660776 3_1:+90016665 None:intergenic
GATCCCTGCTAGAGACAACA+AGG 0.660973 3_1:+90015291 None:intergenic
CCATTGGATCAACTGCTGTG+AGG 0.662223 3_1:-90015677 Msa0386230:CDS
TCTTCGCAACATTCACCACA+AGG 0.675251 3_1:+90014090 None:intergenic
TCGTATATCAGATATCAGAA+CGG 0.698894 3_1:+90013053 None:intergenic
TGGTGATTTCAGTCAAAGAG+TGG 0.700344 3_1:-90013436 Msa0386230:intron
GCTTGGTATGACAATGAATG+GGG 0.708873 3_1:-90013885 Msa0386230:CDS
GTAATTGTTGTCAATGACAG+TGG 0.716762 3_1:-90015552 Msa0386230:CDS
GGGAGATGATATGGTCAAGG+TGG 0.737175 3_1:-90013910 Msa0386230:CDS
ATTGTTGTCAATGACAGTGG+TGG 0.737380 3_1:-90015549 Msa0386230:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTTACAATGAAAATTA+TGG + chr3_1:90013117-90013136 None:intergenic 10.0%
!!! ACATATTTTATATATCTCAT+TGG - chr3_1:90013499-90013518 Msa0386230:intron 15.0%
!!! AAATAAATTCAATTTGCTTA+TGG - chr3_1:90013979-90013998 Msa0386230:CDS 15.0%
!! AATAATCTAAAAAGAACTTA+TGG - chr3_1:90016059-90016078 Msa0386230:intron 15.0%
!! ATCACTTTAATGATCTTTAA+GGG + chr3_1:90013919-90013938 None:intergenic 20.0%
!! TATCACTTTAATGATCTTTA+AGG + chr3_1:90013920-90013939 None:intergenic 20.0%
!! TTACAATTAAGTAACATCTT+TGG - chr3_1:90013940-90013959 Msa0386230:CDS 20.0%
!!! AAGTTAATGAATTTTTGTTC+AGG - chr3_1:90014622-90014641 Msa0386230:intron 20.0%
!!! AGTTAATGAATTTTTGTTCA+GGG - chr3_1:90014623-90014642 Msa0386230:intron 20.0%
!! AAGCTATTGGAAATAAATAA+TGG + chr3_1:90015230-90015249 None:intergenic 20.0%
!! TAACAAAAGGAAAAAACAAA+TGG + chr3_1:90016453-90016472 None:intergenic 20.0%
!! TATCATACGTAAATAACAAA+AGG + chr3_1:90016466-90016485 None:intergenic 20.0%
!! ACACAAAATTAGTAATTCAA+AGG - chr3_1:90016685-90016704 Msa0386230:five_prime_UTR 20.0%
!! AAAATTAGTAATTCAAAGGA+GGG - chr3_1:90016689-90016708 Msa0386230:five_prime_UTR 20.0%
! CTACAAGATAAGATAATGTT+TGG + chr3_1:90012976-90012995 None:intergenic 25.0%
! GATTGAGAGAAAGAAAATTA+TGG + chr3_1:90013046-90013065 None:intergenic 25.0%
! ATGTAACTAGAAAATAACCT+TGG + chr3_1:90013483-90013502 None:intergenic 25.0%
! TTTATGCGACATATAAAAGA+AGG + chr3_1:90013542-90013561 None:intergenic 25.0%
!! ATATTTAGAGCTAATCTATG+TGG + chr3_1:90013744-90013763 None:intergenic 25.0%
!!! TTTAAGAGAATGGCTTTAAA+AGG + chr3_1:90013895-90013914 None:intergenic 25.0%
!! ATGGTTTGCAAATTATAATC+AGG - chr3_1:90013998-90014017 Msa0386230:CDS 25.0%
! AACTAAGTCAACACAATTAA+AGG + chr3_1:90014208-90014227 None:intergenic 25.0%
!! ATTAGTTTCACTGAATTGAA+TGG - chr3_1:90014248-90014267 Msa0386230:CDS 25.0%
! TTGAAATATGATTCTATGCT+TGG - chr3_1:90014321-90014340 Msa0386230:intron 25.0%
! ATTCAAACATCATCAATTGT+AGG - chr3_1:90014481-90014500 Msa0386230:intron 25.0%
!! ATGCTTGTATTTTCATTTTG+TGG + chr3_1:90014507-90014526 None:intergenic 25.0%
! ATAGATCAAAGATGATTAAG+TGG + chr3_1:90015089-90015108 None:intergenic 25.0%
! TATATTTCCAGGAATTGTTA+AGG - chr3_1:90015106-90015125 Msa0386230:intron 25.0%
! ATATTTCCAGGAATTGTTAA+GGG - chr3_1:90015107-90015126 Msa0386230:intron 25.0%
!! ATGATGTTTGATAATATACC+TGG + chr3_1:90015166-90015185 None:intergenic 25.0%
! ATCAAACATCATATGTTTGT+TGG - chr3_1:90015174-90015193 Msa0386230:intron 25.0%
! ATGGATAAGAAGTTACAATA+AGG - chr3_1:90015273-90015292 Msa0386230:CDS 25.0%
! TCTATTTGTATATACTGGAA+TGG + chr3_1:90015906-90015925 None:intergenic 25.0%
! GATGTTCTATTTGTATATAC+TGG + chr3_1:90015911-90015930 None:intergenic 25.0%
!! GTTATTGATAGTTACAATGT+TGG - chr3_1:90016242-90016261 Msa0386230:CDS 25.0%
! AATGCAAAGTTTATGAATAG+AGG - chr3_1:90016387-90016406 Msa0386230:intron 25.0%
! TACCAAGTTAAATTTGTCTA+TGG - chr3_1:90016555-90016574 Msa0386230:five_prime_UTR 25.0%
! CAAAATTAGTAATTCAAAGG+AGG - chr3_1:90016688-90016707 Msa0386230:five_prime_UTR 25.0%
AAAGAAAATTATGGTTGCTG+GGG + chr3_1:90013037-90013056 None:intergenic 30.0%
GAAAGAAAATTATGGTTGCT+GGG + chr3_1:90013038-90013057 None:intergenic 30.0%
AGAAAGAAAATTATGGTTGC+TGG + chr3_1:90013039-90013058 None:intergenic 30.0%
!! AATTATGGTTGATGAATGAG+TGG + chr3_1:90013102-90013121 None:intergenic 30.0%
ATGAAACAAAGCAATCATGA+AGG + chr3_1:90013309-90013328 None:intergenic 30.0%
TTGAATGTAATCACATGTGT+CGG - chr3_1:90013648-90013667 Msa0386230:intron 30.0%
! TCCAACATTTTATGGATGAA+GGG + chr3_1:90013822-90013841 None:intergenic 30.0%
! TTCCAACATTTTATGGATGA+AGG + chr3_1:90013823-90013842 None:intergenic 30.0%
! GTTATGGTTCCAACATTTTA+TGG + chr3_1:90013830-90013849 None:intergenic 30.0%
! CTTTAAGGGATTTAAGAGAA+TGG + chr3_1:90013905-90013924 None:intergenic 30.0%
TAAGTAACATCTTTGGTTAC+TGG - chr3_1:90013947-90013966 Msa0386230:CDS 30.0%
AAGTTAAAGGTAGCAATCAA+TGG - chr3_1:90014059-90014078 Msa0386230:CDS 30.0%
TTGACAACAATTACTTCAAG+TGG + chr3_1:90014140-90014159 None:intergenic 30.0%
AATGAGACTATTACAGTTGA+TGG - chr3_1:90014375-90014394 Msa0386230:intron 30.0%
TGAAAATACAAGCATGTGAT+TGG - chr3_1:90014512-90014531 Msa0386230:intron 30.0%
CATCTTTGATCTATATTTCC+AGG - chr3_1:90015095-90015114 Msa0386230:intron 30.0%
! ACTTCTTATCCATTTTCAGT+TGG + chr3_1:90015266-90015285 None:intergenic 30.0%
!!! TTGTTAGGCTTGATTTGTTT+TGG + chr3_1:90015391-90015410 None:intergenic 30.0%
! CACAACTTTTAGACTTTGTT+AGG + chr3_1:90015406-90015425 None:intergenic 30.0%
GTCAATAGTTGAAGAAACAT+CGG + chr3_1:90015748-90015767 None:intergenic 30.0%
TGACACGAAACTTCATTATA+TGG + chr3_1:90015858-90015877 None:intergenic 30.0%
GTTTATCCTAAAAAGATGCA+TGG + chr3_1:90015933-90015952 None:intergenic 30.0%
ATAAACTTTGCATTCCTCAT+CGG + chr3_1:90016381-90016400 None:intergenic 30.0%
! AATGTGTTTTGTAATGTCTG+AGG - chr3_1:90016526-90016545 Msa0386230:exon 30.0%
! ATGTGTTTTGTAATGTCTGA+GGG - chr3_1:90016527-90016546 Msa0386230:exon 30.0%
GACCATAGACAAATTTAACT+TGG + chr3_1:90016560-90016579 None:intergenic 30.0%
! CTATGGTCAATAATGAGTTT+TGG - chr3_1:90016572-90016591 Msa0386230:five_prime_UTR 30.0%
TCGTATATCAGATATCAGAA+CGG + chr3_1:90016648-90016667 None:intergenic 30.0%
AAAACACTTGGTATGAACTA+CGG + chr3_1:90016742-90016761 None:intergenic 30.0%
AAGAAAATTATGGTTGCTGG+GGG + chr3_1:90013036-90013055 None:intergenic 35.0%
!!! CAAAGAGTTGTTTTTCAGCT+TGG - chr3_1:90013146-90013165 Msa0386230:three_prime_UTR 35.0%
ATGGAAATCTTGTGCTTGTA+GGG + chr3_1:90013221-90013240 None:intergenic 35.0%
AAGCACAAGATTTCCATCAA+AGG - chr3_1:90013224-90013243 Msa0386230:three_prime_UTR 35.0%
TGCGACATATAAAAGAAGGA+AGG + chr3_1:90013538-90013557 None:intergenic 35.0%
TGTCGACAATGGTAATAGTT+TGG - chr3_1:90013613-90013632 Msa0386230:intron 35.0%
ACCCTTCATCCATAAAATGT+TGG - chr3_1:90013818-90013837 Msa0386230:intron 35.0%
GGAACCATAACATATTTGCA+TGG - chr3_1:90013839-90013858 Msa0386230:intron 35.0%
GCTTCCATGCAAATATGTTA+TGG + chr3_1:90013846-90013865 None:intergenic 35.0%
GCAAATTATAATCAGGCCAT+TGG - chr3_1:90014005-90014024 Msa0386230:CDS 35.0%
AGAGACTGTTGCTAAGTTAA+AGG - chr3_1:90014046-90014065 Msa0386230:CDS 35.0%
AAGGTAGCAATCAATGGTTT+CGG - chr3_1:90014065-90014084 Msa0386230:CDS 35.0%
GTAATTGTTGTCAATGACAG+TGG - chr3_1:90014146-90014165 Msa0386230:CDS 35.0%
!! TGTGTTGACTTAGTTTGCTT+TGG - chr3_1:90014213-90014232 Msa0386230:CDS 35.0%
! TCCTCTTGTTTCACATATTC+AGG - chr3_1:90014287-90014306 Msa0386230:intron 35.0%
TGGAATTGACATTGTCATTG+AGG - chr3_1:90014455-90014474 Msa0386230:intron 35.0%
! TGAATTTTTGTTCAGGGAAC+TGG - chr3_1:90014629-90014648 Msa0386230:intron 35.0%
AGCTGTGATGATAACTTTCT+TGG + chr3_1:90014702-90014721 None:intergenic 35.0%
GATATTCCAACTTACGTTGT+TGG - chr3_1:90014737-90014756 Msa0386230:CDS 35.0%
TTTACTCCAACAACGTAAGT+TGG + chr3_1:90014746-90014765 None:intergenic 35.0%
AAAGCCTTACCTTATGATGT+CGG + chr3_1:90014795-90014814 None:intergenic 35.0%
TTAAACTGTTTACCTCGTTG+CGG - chr3_1:90014820-90014839 Msa0386230:intron 35.0%
ATGTCAATGCAAGATAGTGT+TGG - chr3_1:90014879-90014898 Msa0386230:intron 35.0%
AAGATCCTGGATGAAGAATT+CGG - chr3_1:90014990-90015009 Msa0386230:CDS 35.0%
!!! AAGCTTGTTTTACTTATGCG+TGG - chr3_1:90015203-90015222 Msa0386230:intron 35.0%
AAGATTGACTAGGAAGCTAT+TGG + chr3_1:90015243-90015262 None:intergenic 35.0%
TTTCAGTTGGAAGATTGACT+AGG + chr3_1:90015253-90015272 None:intergenic 35.0%
GTCAATCTTCCAACTGAAAA+TGG - chr3_1:90015254-90015273 Msa0386230:CDS 35.0%
TAAAAGTTGTGTTTGTGCAG+AGG - chr3_1:90015415-90015434 Msa0386230:intron 35.0%
ACAACTGAAACATTAGGTGT+TGG + chr3_1:90015585-90015604 None:intergenic 35.0%
AGGTCAACAACTGAAACATT+AGG + chr3_1:90015591-90015610 None:intergenic 35.0%
ACATCCAATACACCTTTCAA+TGG + chr3_1:90015687-90015706 None:intergenic 35.0%
!! TATTGACTCTTCCTTGACTA+TGG - chr3_1:90015761-90015780 Msa0386230:intron 35.0%
TTGCTTGGTATGACAATGAA+TGG - chr3_1:90015811-90015830 Msa0386230:intron 35.0%
TGCTTGGTATGACAATGAAT+GGG - chr3_1:90015812-90015831 Msa0386230:intron 35.0%
! GAACATCCATGCATCTTTTT+AGG - chr3_1:90015924-90015943 Msa0386230:intron 35.0%
CACATCTAGTAGCAAACAAA+TGG - chr3_1:90016294-90016313 Msa0386230:CDS 35.0%
GTAATTCAAAGGAGGGAAAT+AGG - chr3_1:90016696-90016715 Msa0386230:five_prime_UTR 35.0%
CTTGGTTGCATCTATAGCTA+TGG - chr3_1:90013164-90013183 Msa0386230:three_prime_UTR 40.0%
TGTAGAAGCTAAAGCTGCAT+GGG + chr3_1:90013193-90013212 None:intergenic 40.0%
TTGTAGAAGCTAAAGCTGCA+TGG + chr3_1:90013194-90013213 None:intergenic 40.0%
GATGGAAATCTTGTGCTTGT+AGG + chr3_1:90013222-90013241 None:intergenic 40.0%
CTCTCTAGCATTACTAGCAT+AGG + chr3_1:90013423-90013442 None:intergenic 40.0%
!! GTGGTATTTGGTGTTTGTGT+CGG + chr3_1:90013586-90013605 None:intergenic 40.0%
CGACAAATCAGTGTGGTATT+TGG + chr3_1:90013598-90013617 None:intergenic 40.0%
! TGTCAAACACCGACATGTTT+TGG - chr3_1:90013671-90013690 Msa0386230:intron 40.0%
GTCTAGTGTCCAAAACATGT+CGG + chr3_1:90013683-90013702 None:intergenic 40.0%
ACACCTGTAATCTGAATCGT+CGG - chr3_1:90013703-90013722 Msa0386230:intron 40.0%
ATACCGACGATTCAGATTAC+AGG + chr3_1:90013709-90013728 None:intergenic 40.0%
AACATCTTTGGTTACTGGAC+TGG - chr3_1:90013952-90013971 Msa0386230:CDS 40.0%
GTAGAAATTTCCTGAGATGC+TGG - chr3_1:90014096-90014115 Msa0386230:CDS 40.0%
ATTGTTGTCAATGACAGTGG+TGG - chr3_1:90014149-90014168 Msa0386230:CDS 40.0%
GCCTGAATATGTGAAACAAG+AGG + chr3_1:90014291-90014310 None:intergenic 40.0%
GGAGTAAATGAGCAAGACTA+CGG - chr3_1:90014758-90014777 Msa0386230:intron 40.0%
! TTATGATGTCGGCTACTTCA+TGG + chr3_1:90014784-90014803 None:intergenic 40.0%
ATGAAGTAGCCGACATCATA+AGG - chr3_1:90014783-90014802 Msa0386230:intron 40.0%
GATGTTGAGGTTGAGAACAA+GGG - chr3_1:90014842-90014861 Msa0386230:intron 40.0%
TCATCCAGGATCTTCACAAA+GGG + chr3_1:90014984-90015003 None:intergenic 40.0%
TTCATCCAGGATCTTCACAA+AGG + chr3_1:90014985-90015004 None:intergenic 40.0%
!! TGATTAAGTGGCTTTGAGCT+AGG + chr3_1:90015077-90015096 None:intergenic 40.0%
ATGGTTCCCTTAACAATTCC+TGG + chr3_1:90015116-90015135 None:intergenic 40.0%
TGTTTCAGTTGTTGACCTTG+TGG - chr3_1:90015593-90015612 Msa0386230:CDS 40.0%
TGTCAATGCAGCATTCAGAA+AGG - chr3_1:90015650-90015669 Msa0386230:CDS 40.0%
TCTTCCTTGACTATGGTCAT+GGG - chr3_1:90015768-90015787 Msa0386230:intron 40.0%
TATGGTCATGGGAGATGATA+TGG - chr3_1:90015779-90015798 Msa0386230:intron 40.0%
GCTTGGTATGACAATGAATG+GGG - chr3_1:90015813-90015832 Msa0386230:intron 40.0%
ATGACAATGAATGGGGTTAC+AGG - chr3_1:90015820-90015839 Msa0386230:intron 40.0%
! TCATCGTTTGAGGTCTGTTT+GGG + chr3_1:90016166-90016185 None:intergenic 40.0%
! TTCATCGTTTGAGGTCTGTT+TGG + chr3_1:90016167-90016186 None:intergenic 40.0%
TGGTGATTTCAGTCAAAGAG+TGG - chr3_1:90016262-90016281 Msa0386230:CDS 40.0%
TGATTTCAGTCAAAGAGTGG+TGG - chr3_1:90016265-90016284 Msa0386230:CDS 40.0%
!! AACAAATGGCTTGCTTGTAG+AGG + chr3_1:90016439-90016458 None:intergenic 40.0%
CTTGGTATGAACTACGGATT+AGG + chr3_1:90016736-90016755 None:intergenic 40.0%
AAAGAGTGAGAGGCCTTTGA+TGG + chr3_1:90013240-90013259 None:intergenic 45.0%
!! TTGAGTTGGGAAAGAGTGAG+AGG + chr3_1:90013250-90013269 None:intergenic 45.0%
!! CCTTTGAGGCACATTGAGTT+GGG + chr3_1:90013263-90013282 None:intergenic 45.0%
!! ACCTTTGAGGCACATTGAGT+TGG + chr3_1:90013264-90013283 None:intergenic 45.0%
CAGAGAGAGTGAAACCTTTG+AGG + chr3_1:90013277-90013296 None:intergenic 45.0%
CAAAGGTTTCACTCTCTCTG+TGG - chr3_1:90013277-90013296 Msa0386230:three_prime_UTR 45.0%
TTTGCTTGTGCAGAGACTTG+AGG - chr3_1:90013358-90013377 Msa0386230:CDS 45.0%
CCATTGTCGACAAATCAGTG+TGG + chr3_1:90013605-90013624 None:intergenic 45.0%
!! CCACACTGATTTGTCGACAA+TGG - chr3_1:90013602-90013621 Msa0386230:intron 45.0%
CATTGGATCAACTGCTGTGA+GGG - chr3_1:90014022-90014041 Msa0386230:CDS 45.0%
ATTGGATCAACTGCTGTGAG+GGG - chr3_1:90014023-90014042 Msa0386230:CDS 45.0%
ATCAATGGTTTCGGACGCAT+TGG - chr3_1:90014074-90014093 Msa0386230:CDS 45.0%
AATTTCCTGAGATGCTGGCA+CGG - chr3_1:90014101-90014120 Msa0386230:CDS 45.0%
CTGCTAGAGACAACAAGGAT+GGG + chr3_1:90014405-90014424 None:intergenic 45.0%
! CATCCTTGTTGTCTCTAGCA+GGG - chr3_1:90014404-90014423 Msa0386230:intron 45.0%
GGATCCTCTTAAGCTTCCTT+GGG - chr3_1:90014425-90014444 Msa0386230:intron 45.0%
! ACCTGCTTGGATGTGTTTTC+CGG + chr3_1:90014678-90014697 None:intergenic 45.0%
TAACTTTCTTGGCACCTGCT+TGG + chr3_1:90014691-90014710 None:intergenic 45.0%
TATCATCACAGCTCCTGCAA+AGG - chr3_1:90014709-90014728 Msa0386230:CDS 45.0%
ATCATCACAGCTCCTGCAAA+GGG - chr3_1:90014710-90014729 Msa0386230:CDS 45.0%
GTAGCCGACATCATAAGGTA+AGG - chr3_1:90014788-90014807 Msa0386230:intron 45.0%
GGATGTTGAGGTTGAGAACA+AGG - chr3_1:90014841-90014860 Msa0386230:intron 45.0%
AAAGGGAGCAAGACAGTTTG+TGG + chr3_1:90014967-90014986 None:intergenic 45.0%
GCTTACCGAATTCTTCATCC+AGG + chr3_1:90014998-90015017 None:intergenic 45.0%
GTAGGAATGTGTGGTTGTCA+TGG + chr3_1:90015135-90015154 None:intergenic 45.0%
ACAACCACACATTCCTACAC+AGG - chr3_1:90015137-90015156 Msa0386230:intron 45.0%
ATATACCTGGTCTCCTGTGT+AGG + chr3_1:90015153-90015172 None:intergenic 45.0%
!! ATTAGGTGTTGGCACACGAA+GGG + chr3_1:90015574-90015593 None:intergenic 45.0%
TCTTCGCAACATTCACCACA+AGG + chr3_1:90015611-90015630 None:intergenic 45.0%
TGTGGTGAATGTTGCGAAGA+AGG - chr3_1:90015611-90015630 Msa0386230:CDS 45.0%
GTGGTGAATGTTGCGAAGAA+GGG - chr3_1:90015612-90015631 Msa0386230:CDS 45.0%
! GGGACCATTGAAAGGTGTAT+TGG - chr3_1:90015680-90015699 Msa0386230:CDS 45.0%
TTGAAGAAACATCGGTGCAG+CGG + chr3_1:90015740-90015759 None:intergenic 45.0%
CTCTTCCTTGACTATGGTCA+TGG - chr3_1:90015767-90015786 Msa0386230:intron 45.0%
ATCTCCCATGACCATAGTCA+AGG + chr3_1:90015775-90015794 None:intergenic 45.0%
CATGGGAGATGATATGGTCA+AGG - chr3_1:90015785-90015804 Msa0386230:intron 45.0%
ATATGGTCAAGGTGGTTGCT+TGG - chr3_1:90015796-90015815 Msa0386230:intron 45.0%
GCAGCAACTTTCATCGTTTG+AGG + chr3_1:90016176-90016195 None:intergenic 45.0%
CAAACGATGAAAGTTGCTGC+TGG - chr3_1:90016176-90016195 Msa0386230:intron 45.0%
!! CAGTCAAAGAGTGGTGGATT+TGG - chr3_1:90016271-90016290 Msa0386230:CDS 45.0%
CTAGTAGCAAACAAATGGCC+AGG - chr3_1:90016299-90016318 Msa0386230:CDS 45.0%
ACTTTGCATTCCTCATCGGA+CGG + chr3_1:90016377-90016396 None:intergenic 45.0%
! TGGGGGAGTAATGGAATGAG+TGG + chr3_1:90013019-90013038 None:intergenic 50.0%
TATGGTTGCTGGGGGAGTAA+TGG + chr3_1:90013028-90013047 None:intergenic 50.0%
AGAAGCTAAAGCTGCATGGG+TGG + chr3_1:90013190-90013209 None:intergenic 50.0%
CCCAACTCAATGTGCCTCAA+AGG - chr3_1:90013260-90013279 Msa0386230:three_prime_UTR 50.0%
CTTGAGGTGGCTGAATTCAG+TGG - chr3_1:90013374-90013393 Msa0386230:CDS 50.0%
CCTCACAGCAGTTGATCCAA+TGG + chr3_1:90014024-90014043 None:intergenic 50.0%
CCATTGGATCAACTGCTGTG+AGG - chr3_1:90014021-90014040 Msa0386230:CDS 50.0%
CCTGCTAGAGACAACAAGGA+TGG + chr3_1:90014406-90014425 None:intergenic 50.0%
! CCATCCTTGTTGTCTCTAGC+AGG - chr3_1:90014403-90014422 Msa0386230:intron 50.0%
GATCCCTGCTAGAGACAACA+AGG + chr3_1:90014410-90014429 None:intergenic 50.0%
GGGATCCTCTTAAGCTTCCT+TGG - chr3_1:90014424-90014443 Msa0386230:intron 50.0%
TCAGCCCAAGGAAGCTTAAG+AGG + chr3_1:90014432-90014451 None:intergenic 50.0%
TCAATTCCAAGCTCAGCCCA+AGG + chr3_1:90014444-90014463 None:intergenic 50.0%
! TCAGGGAACTGGAGTGTTTG+TGG - chr3_1:90014640-90014659 Msa0386230:intron 50.0%
! GGAACTGGAGTGTTTGTGGA+TGG - chr3_1:90014644-90014663 Msa0386230:intron 50.0%
TTACCTCGTTGCGGATGTTG+AGG - chr3_1:90014829-90014848 Msa0386230:intron 50.0%
TGCTCCCTTTGTGAAGATCC+TGG - chr3_1:90014977-90014996 Msa0386230:CDS 50.0%
GTCTCCTGTGTAGGAATGTG+TGG + chr3_1:90015144-90015163 None:intergenic 50.0%
ACATTCCTACACAGGAGACC+AGG - chr3_1:90015145-90015164 Msa0386230:intron 50.0%
TGTGTTTGTGCAGAGGCTTC+TGG - chr3_1:90015422-90015441 Msa0386230:intron 50.0%
GCTTCTGGATGCTTCACACA+GGG - chr3_1:90015437-90015456 Msa0386230:intron 50.0%
TTGAGCTTTCCCTTGAGCTG+TGG + chr3_1:90015543-90015562 None:intergenic 50.0%
CAGCTCAAGGGAAAGCTCAA+CGG - chr3_1:90015543-90015562 Msa0386230:CDS 50.0%
!! CATTAGGTGTTGGCACACGA+AGG + chr3_1:90015575-90015594 None:intergenic 50.0%
AGCATTCAGAAAGGCAGCTG+AGG - chr3_1:90015659-90015678 Msa0386230:CDS 50.0%
GCATTCAGAAAGGCAGCTGA+GGG - chr3_1:90015660-90015679 Msa0386230:CDS 50.0%
CGGAAGTCAACAGACACAAG+TGG + chr3_1:90015720-90015739 None:intergenic 50.0%
GGGAGATGATATGGTCAAGG+TGG - chr3_1:90015788-90015807 Msa0386230:intron 50.0%
ATCTCCACTTCCTGCTTGAG+GGG + chr3_1:90016327-90016346 None:intergenic 50.0%
GATCTCCACTTCCTGCTTGA+GGG + chr3_1:90016328-90016347 None:intergenic 50.0%
AGCAGGAAGTGGAGATCCAT+TGG - chr3_1:90016331-90016350 Msa0386230:intron 50.0%
AGGAAGTGGAGATCCATTGG+AGG - chr3_1:90016334-90016353 Msa0386230:intron 50.0%
GTCTCACAGAAGTCCTCCAA+TGG + chr3_1:90016350-90016369 None:intergenic 50.0%
CTTTGCATTCCTCATCGGAC+GGG + chr3_1:90016376-90016395 None:intergenic 50.0%
GCTTGTGCAGAGACTTGAGG+TGG - chr3_1:90013361-90013380 Msa0386230:CDS 55.0%
AGCTGCTCAACTCGCAACCA+AGG - chr3_1:90013463-90013482 Msa0386230:intron 55.0%
AAGCTTCCTTGGGCTGAGCT+TGG - chr3_1:90014435-90014454 Msa0386230:intron 55.0%
! GGATGTGTTTTCCGGCTCCA+GGG + chr3_1:90014670-90014689 None:intergenic 55.0%
! TGGATGTGTTTTCCGGCTCC+AGG + chr3_1:90014671-90014690 None:intergenic 55.0%
GCCGGAAAACACATCCAAGC+AGG - chr3_1:90014674-90014693 Msa0386230:intron 55.0%
GGAATATCAGCGCCCTTTGC+AGG + chr3_1:90014725-90014744 None:intergenic 55.0%
CAACCTCAACATCCGCAACG+AGG + chr3_1:90014835-90014854 None:intergenic 55.0%
GGCTTCTGGATGCTTCACAC+AGG - chr3_1:90015436-90015455 Msa0386230:intron 55.0%
ACAGGGACTTGAGAAGAGCC+AGG - chr3_1:90015454-90015473 Msa0386230:intron 55.0%
CAGGGACTTGAGAAGAGCCA+GGG - chr3_1:90015455-90015474 Msa0386230:intron 55.0%
AACATTGTCCCCACCAGCAC+AGG - chr3_1:90015489-90015508 Msa0386230:intron 55.0%
CAGCACTAGAGAGACAGCCT+TGG + chr3_1:90015520-90015539 None:intergenic 55.0%
TCTAGTGCTGCCACAGCTCA+AGG - chr3_1:90015530-90015549 Msa0386230:intron 55.0%
CTAGTGCTGCCACAGCTCAA+GGG - chr3_1:90015531-90015550 Msa0386230:intron 55.0%
GCAGCTGAGGGACCATTGAA+AGG - chr3_1:90015672-90015691 Msa0386230:CDS 55.0%
GGATCTCCACTTCCTGCTTG+AGG + chr3_1:90016329-90016348 None:intergenic 55.0%
TGAGACAAACCCGTCCGATG+AGG - chr3_1:90016364-90016383 Msa0386230:intron 55.0%
TTCGACCGTGCCAGCATCTC+AGG + chr3_1:90014109-90014128 None:intergenic 60.0%
GAGATGCTGGCACGGTCGAA+AGG - chr3_1:90014109-90014128 Msa0386230:CDS 60.0%
! GGAGTGTTTGTGGATGGCCC+TGG - chr3_1:90014650-90014669 Msa0386230:intron 60.0%
TTTGTGGATGGCCCTGGAGC+CGG - chr3_1:90014656-90014675 Msa0386230:intron 60.0%
AATGTTCAGCGCTGCAGCCC+TGG + chr3_1:90015475-90015494 None:intergenic 60.0%
! TTGGCTGCTCCTGTGCTGGT+GGG + chr3_1:90015501-90015520 None:intergenic 60.0%
! TGGCTGCTCCTGTGCTGGTG+GGG + chr3_1:90015500-90015519 None:intergenic 65.0%
CTTGGCTGCTCCTGTGCTGG+TGG + chr3_1:90015502-90015521 None:intergenic 65.0%
CACCAGCACAGGAGCAGCCA+AGG - chr3_1:90015500-90015519 Msa0386230:intron 65.0%
AGCCTTGGCTGCTCCTGTGC+TGG + chr3_1:90015505-90015524 None:intergenic 65.0%
!! CTTCCTGCTTGAGGGGTGCC+TGG + chr3_1:90016320-90016339 None:intergenic 65.0%
GGCACCCCTCAAGCAGGAAG+TGG - chr3_1:90016320-90016339 Msa0386230:CDS 65.0%
TGGCCAGGCACCCCTCAAGC+AGG - chr3_1:90016314-90016333 Msa0386230:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 90012957 90016763 90012957 ID=Msa0386230;Name=Msa0386230
chr3_1 mRNA 90012957 90016763 90012957 ID=Msa0386230-mRNA-1;Parent=Msa0386230;Name=Msa0386230-mRNA-1;_AED=0.05;_eAED=0.05;_QI=226|1|1|1|1|1|9|357|451
chr3_1 exon 90012957 90013446 90012957 ID=Msa0386230-mRNA-1:exon:24777;Parent=Msa0386230-mRNA-1
chr3_1 exon 90013879 90014285 90013879 ID=Msa0386230-mRNA-1:exon:24776;Parent=Msa0386230-mRNA-1
chr3_1 exon 90014554 90014603 90014554 ID=Msa0386230-mRNA-1:exon:24775;Parent=Msa0386230-mRNA-1
chr3_1 exon 90014709 90014770 90014709 ID=Msa0386230-mRNA-1:exon:24774;Parent=Msa0386230-mRNA-1
chr3_1 exon 90014916 90015076 90014916 ID=Msa0386230-mRNA-1:exon:24773;Parent=Msa0386230-mRNA-1
chr3_1 exon 90015244 90015411 90015244 ID=Msa0386230-mRNA-1:exon:24772;Parent=Msa0386230-mRNA-1
chr3_1 exon 90015539 90015700 90015539 ID=Msa0386230-mRNA-1:exon:24771;Parent=Msa0386230-mRNA-1
chr3_1 exon 90016236 90016349 90016236 ID=Msa0386230-mRNA-1:exon:24770;Parent=Msa0386230-mRNA-1
chr3_1 exon 90016439 90016763 90016439 ID=Msa0386230-mRNA-1:exon:24769;Parent=Msa0386230-mRNA-1
chr3_1 five_prime_UTR 90016538 90016763 90016538 ID=Msa0386230-mRNA-1:five_prime_utr;Parent=Msa0386230-mRNA-1
chr3_1 CDS 90016439 90016537 90016439 ID=Msa0386230-mRNA-1:cds;Parent=Msa0386230-mRNA-1
chr3_1 CDS 90016236 90016349 90016236 ID=Msa0386230-mRNA-1:cds;Parent=Msa0386230-mRNA-1
chr3_1 CDS 90015539 90015700 90015539 ID=Msa0386230-mRNA-1:cds;Parent=Msa0386230-mRNA-1
chr3_1 CDS 90015244 90015411 90015244 ID=Msa0386230-mRNA-1:cds;Parent=Msa0386230-mRNA-1
chr3_1 CDS 90014916 90015076 90014916 ID=Msa0386230-mRNA-1:cds;Parent=Msa0386230-mRNA-1
chr3_1 CDS 90014709 90014770 90014709 ID=Msa0386230-mRNA-1:cds;Parent=Msa0386230-mRNA-1
chr3_1 CDS 90014554 90014603 90014554 ID=Msa0386230-mRNA-1:cds;Parent=Msa0386230-mRNA-1
chr3_1 CDS 90013879 90014285 90013879 ID=Msa0386230-mRNA-1:cds;Parent=Msa0386230-mRNA-1
chr3_1 CDS 90013314 90013446 90013314 ID=Msa0386230-mRNA-1:cds;Parent=Msa0386230-mRNA-1
chr3_1 three_prime_UTR 90012957 90013313 90012957 ID=Msa0386230-mRNA-1:three_prime_utr;Parent=Msa0386230-mRNA-1
Gene Sequence

>Msa0386230

ATGGCCACCCATGCAGCTTTAGCTTCTACAAGAATCCCTACAAGCACAAGATTTCCATCAAAGGCCTCTCACTCTTTCCCAACTCAATGTGCCTCAAAGAGACTTGAGGTGGCTGAATTCAGTGGACTAAAATCTACTTCATGCATTACCTATGCTAGTAATGCTAGAGAGTCTTCTTTTTCTGATGTTGTAGCTGCTCAACTCGCAACCAAGGCCATTGGATCAACTGCTGTGAGGGGAGAGACTGTTGCTAAGTTAAAGGTAGCAATCAATGGTTTCGGACGCATTGGTAGAAATTTCCTGAGATGCTGGCACGGTCGAAAGGACTCGCCACTTGAAGTAATTGTTGTCAATGACAGTGGTGGTGTCAAGAATGCTTCACACTTGTTGAAATATGATTCTATGCTTGGAACATTTAAAGCAGATGTGAAAATACTAAACAATGAGACTATTACAGTTGATGGTAAGCCCATCCTTGTTGTCTCTAGCAGGGATCCTCTTAAGCTTCCTTGGGCTGAGCTTGGAATTGACATTGTCATTGAGGGAACTGGAGTGTTTGTGGATGGCCCTGGAGCCGGAAAACACATCCAAGCAGGTGCCAAGAAAGTTATCATCACAGCTCCTGCAAAGGGCGCTGATATTCCAACTTACGTTGTTGGAGTAAATGAGCAAGACTACGGCCATGAAGTAGCCGACATCATAAGCAATGCTTCTTGCACCACAAACTGTCTTGCTCCCTTTGTGAAGATCCTGGATGAAGAATTCGGAATTGTTAAGGGAACCATGACAACCACACATTCCTACACAGGAGACCAGAGGCTTCTGGATGCTTCACACAGGGACTTGAGAAGAGCCAGGGCTGCAGCGCTGAACATTGTCCCCACCAGCACAGGAGCAGCCAAGGCTGTCTCTCTAGTGCTGCCACAGCTCAAGGGAAAGCTCAACGGAATCGCCCTTCGTGTGCCAACACCTAATGTTTCAGTTGTTGACCTTGTGGTGAATGTTGCGAAGAAGGGTATTTCAGCTGAAGATGTCAATGCAGCATTCAGAAAGGCAGCTGAGGGACCATTGAAAGGTGTATTGGATGTCTGTGATGTTCCACTTGTGTCTGTTGACTTCCGCTGCACCGATGTTTCTTCAACTATTGACTCTTCCTTGACTATGGTCATGGGAGATGATATGGTCAAGGTGGTTGCTTGGTATGACAATGAATGGGGTTACAGTCAAAGAGTGGTGGATTTGGCACATCTAGTAGCAAACAAATGGCCAGGCACCCCTCAAGCAGGAAGTGGAGATCCATTGGAGGACTTCTGTGAGACAAACCCGTCCGATGAGGAATGCAAAGTTTATGAATAG

Protein sequence

>Msa0386230

MATHAALASTRIPTSTRFPSKASHSFPTQCASKRLEVAEFSGLKSTSCITYASNARESSFSDVVAAQLATKAIGSTAVRGETVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSGGVKNASHLLKYDSMLGTFKADVKILNNETITVDGKPILVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEQDYGHEVADIISNASCTTNCLAPFVKILDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRKAAEGPLKGVLDVCDVPLVSVDFRCTDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKWPGTPQAGSGDPLEDFCETNPSDEECKVYE*