AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0386800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386800 MtrunA17_Chr4g0035001 84.337 83 13 0 1 83 1 83 2.42e-48 153
Msa0386800 MtrunA17_Chr4g0035051 82.927 82 14 0 2 83 4 85 9.53e-48 150
Msa0386800 MtrunA17_Chr4g0035031 80.723 83 16 0 2 84 4 86 6.62e-45 145
Msa0386800 MtrunA17_Chr2g0278661 60.241 83 33 0 5 87 6 88 8.91e-33 115
Msa0386800 MtrunA17_Chr4g0050781 59.036 83 34 0 3 85 4 86 6.95e-32 112
Msa0386800 MtrunA17_Chr3g0121631 53.165 79 36 1 7 85 37 114 7.66e-25 92.8
Msa0386800 MtrunA17_Chr3g0116631 52.273 88 42 0 3 90 203 290 3.54e-24 94.4
Msa0386800 MtrunA17_Chr3g0116631 41.975 81 47 0 7 87 110 190 1.87e-13 65.5
Msa0386800 MtrunA17_Chr1g0210241 46.739 92 49 0 5 96 6 97 1.35e-23 92.8
Msa0386800 MtrunA17_Chr4g0061451 48.101 79 41 0 7 85 43 121 1.57e-23 92.4
Msa0386800 MtrunA17_Chr7g0219021 44.578 83 46 0 7 89 41 123 3.98e-23 90.9
Msa0386800 MtrunA17_Chr3g0086861 46.835 79 42 0 7 85 45 123 1.43e-22 92.0
Msa0386800 MtrunA17_Chr3g0119311 46.341 82 44 0 7 88 37 118 2.48e-22 85.9
Msa0386800 MtrunA17_Chr4g0058151 51.852 81 39 0 6 86 216 296 5.40e-22 89.0
Msa0386800 MtrunA17_Chr4g0058151 42.857 84 48 0 5 88 121 204 9.03e-16 72.0
Msa0386800 MtrunA17_Chr1g0181111 55.000 80 36 0 7 86 197 276 6.54e-22 88.2
Msa0386800 MtrunA17_Chr1g0181111 35.833 120 65 2 7 122 85 196 1.06e-11 60.8
Msa0386800 MtrunA17_Chr7g0263001 49.367 79 40 0 7 85 36 114 9.14e-20 79.7
Msa0386800 MtrunA17_Chr7g0266751 39.583 96 58 0 4 99 30 125 1.23e-19 79.3
Msa0386800 MtrunA17_Chr4g0017401 44.681 94 44 3 7 94 17 108 3.78e-18 78.2
Msa0386800 MtrunA17_Chr6g0481071 43.750 80 45 0 7 86 96 175 8.91e-18 75.5
Msa0386800 MtrunA17_Chr1g0168601 43.902 82 46 0 2 83 149 230 9.47e-18 76.6
Msa0386800 MtrunA17_Chr4g0042161 43.820 89 50 0 1 89 46 134 3.03e-17 73.2
Msa0386800 MtrunA17_Chr3g0144311 46.053 76 40 1 7 82 30 104 1.30e-16 74.3
Msa0386800 MtrunA17_Chr3g0127751 41.860 86 49 1 7 92 27 111 2.46e-16 72.8
Msa0386800 MtrunA17_Chr2g0327921 39.024 82 50 0 7 88 8 89 4.38e-16 68.6
Msa0386800 MtrunA17_Chr3g0101061 39.241 79 46 1 7 85 41 117 4.85e-16 73.6
Msa0386800 MtrunA17_Chr8g0346011 47.368 76 39 1 7 82 38 112 6.72e-16 72.4
Msa0386800 MtrunA17_Chr7g0219031 42.424 66 38 0 7 72 41 106 1.19e-15 68.2
Msa0386800 MtrunA17_Chr5g0447761 39.241 79 46 2 7 85 7 83 1.43e-14 69.3
Msa0386800 MtrunA17_Chr1g0198431 37.500 88 55 0 7 94 193 280 1.46e-14 68.6
Msa0386800 MtrunA17_Chr3g0110211 30.882 136 91 2 8 140 114 249 1.87e-14 68.9
Msa0386800 MtrunA17_Chr2g0290191 36.709 79 48 1 7 85 5 81 2.28e-14 68.9
Msa0386800 MtrunA17_Chr5g0426311 42.105 76 43 1 7 82 17 91 2.39e-14 68.2
Msa0386800 MtrunA17_Chr1g0186351 35.443 79 49 1 7 85 7 83 2.86e-14 68.6
Msa0386800 MtrunA17_Chr1g0186351 35.294 85 54 1 7 91 113 196 2.72e-13 65.9
Msa0386800 MtrunA17_Chr3g0088511 40.541 74 44 0 7 80 33 106 4.20e-14 64.7
Msa0386800 MtrunA17_Chr3g0120721 33.582 134 79 3 7 133 107 237 5.72e-14 67.4
Msa0386800 MtrunA17_Chr4g0031091 41.096 73 43 0 7 79 34 106 6.49e-14 63.5
Msa0386800 MtrunA17_Chr7g0276531 47.458 59 31 0 7 65 19 77 9.49e-14 66.2
Msa0386800 MtrunA17_Chr6g0449481 29.310 116 72 1 7 122 134 239 3.86e-13 65.1
Msa0386800 MtrunA17_Chr4g0065741 34.444 90 59 0 7 96 72 161 5.38e-13 62.4
Msa0386800 MtrunA17_Chr7g0267571 36.047 86 55 0 6 91 212 297 1.48e-12 63.2
Msa0386800 MtrunA17_Chr4g0062931 33.065 124 82 1 8 131 9 131 6.25e-12 62.0
Msa0386800 MtrunA17_Chr5g0419351 39.535 86 52 0 8 93 12 97 7.00e-12 59.7
Msa0386800 MtrunA17_Chr7g0265341 43.836 73 40 1 9 81 161 232 1.92e-11 60.5
Msa0386800 MtrunA17_Chr4g0044541 42.857 84 44 2 9 89 125 207 2.60e-11 60.1
Msa0386800 MtrunA17_Chr8g0360551 38.554 83 49 2 7 89 74 154 3.85e-11 59.7
Msa0386800 MtrunA17_Chr4g0038111 36.458 96 58 3 9 103 342 435 3.91e-11 59.7
Msa0386800 MtrunA17_Chr8g0344491 38.824 85 51 1 5 89 146 229 4.66e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0386800 AT4G39260.3 74.725 91 23 0 1 91 1 91 1.93e-46 146
Msa0386800 AT2G21660.2 79.012 81 17 0 3 83 5 85 1.73e-43 140
Msa0386800 AT2G21660.1 79.012 81 17 0 3 83 5 85 2.87e-43 140
Msa0386800 AT4G39260.2 72.289 83 23 0 1 83 1 83 4.62e-41 133
Msa0386800 AT4G39260.1 72.289 83 23 0 1 83 1 83 1.66e-40 133
Msa0386800 AT3G26420.1 55.682 88 39 0 3 90 4 91 9.58e-32 113
Msa0386800 AT4G13850.3 54.878 82 37 0 7 88 36 117 4.69e-26 96.3
Msa0386800 AT4G13850.4 55.556 81 36 0 7 87 36 116 4.77e-26 95.9
Msa0386800 AT4G13850.2 54.878 82 37 0 7 88 36 117 5.95e-26 96.3
Msa0386800 AT4G13850.1 54.878 82 37 0 7 88 36 117 6.78e-26 96.3
Msa0386800 AT4G39260.4 55.660 106 24 1 1 106 1 83 1.83e-25 93.6
Msa0386800 AT3G23830.2 55.208 96 40 1 7 102 36 128 8.03e-25 92.8
Msa0386800 AT3G23830.1 55.208 96 40 1 7 102 36 128 8.03e-25 92.8
Msa0386800 AT5G61030.2 50.633 79 39 0 7 85 41 119 2.03e-24 95.9
Msa0386800 AT5G61030.1 50.633 79 39 0 7 85 41 119 2.03e-24 95.9
Msa0386800 AT3G53460.1 51.807 83 40 0 7 89 258 340 1.50e-23 94.0
Msa0386800 AT3G53460.1 42.105 76 44 0 5 80 98 173 5.38e-11 59.3
Msa0386800 AT3G53460.3 51.807 83 40 0 7 89 258 340 1.50e-23 94.0
Msa0386800 AT3G53460.3 42.105 76 44 0 5 80 98 173 5.38e-11 59.3
Msa0386800 AT3G53460.2 51.807 83 40 0 7 89 258 340 1.50e-23 94.0
Msa0386800 AT3G53460.2 42.105 76 44 0 5 80 98 173 5.38e-11 59.3
Msa0386800 AT2G37220.1 50.617 81 40 0 7 87 205 285 1.87e-23 92.8
Msa0386800 AT2G37220.1 43.421 76 43 0 5 80 90 165 4.93e-13 64.7
Msa0386800 AT3G53460.4 51.807 83 40 0 7 89 279 361 2.20e-23 94.0
Msa0386800 AT4G24770.1 50.588 85 42 0 3 87 241 325 9.78e-23 91.7
Msa0386800 AT4G24770.1 45.783 83 45 0 5 87 149 231 6.96e-16 73.2
Msa0386800 AT4G24770.2 50.588 85 42 0 3 87 241 325 9.78e-23 91.7
Msa0386800 AT4G24770.2 45.783 83 45 0 5 87 149 231 6.96e-16 73.2
Msa0386800 AT5G06210.1 44.444 90 50 0 4 93 32 121 2.16e-21 84.3
Msa0386800 AT5G04280.1 46.237 93 49 1 7 98 8 100 3.93e-21 87.0
Msa0386800 AT1G74230.1 52.632 76 35 1 7 82 35 109 5.45e-21 86.3
Msa0386800 AT5G50250.1 50.000 80 40 0 6 85 207 286 5.98e-21 86.3
Msa0386800 AT5G50250.1 44.578 83 46 0 5 87 112 194 1.09e-15 72.0
Msa0386800 AT1G18630.1 50.000 78 39 0 7 84 37 114 9.82e-21 82.8
Msa0386800 AT5G47320.1 49.351 77 39 0 7 83 32 108 1.84e-19 80.9
Msa0386800 AT2G21690.1 47.126 87 41 1 4 85 5 91 2.07e-19 78.2
Msa0386800 AT1G60650.2 40.385 104 60 1 4 107 10 111 3.53e-19 81.6
Msa0386800 AT1G60650.1 40.385 104 60 1 4 107 10 111 3.53e-19 81.6
Msa0386800 AT5G19960.1 34.677 124 80 1 8 131 9 131 1.53e-18 80.5
Msa0386800 AT2G46780.1 43.269 104 51 2 7 103 23 125 1.65e-18 80.5
Msa0386800 AT2G46780.2 43.269 104 51 2 7 103 23 125 1.65e-18 80.5
Msa0386800 AT2G37510.1 51.351 74 36 0 7 80 35 108 3.47e-18 75.9
Msa0386800 AT1G22910.1 44.086 93 46 2 7 94 14 105 3.12e-17 75.9
Msa0386800 AT4G13860.1 45.205 73 40 0 7 79 4 76 3.28e-17 72.0
Msa0386800 AT1G22910.2 44.086 93 46 2 7 94 14 105 3.47e-17 75.5
Msa0386800 AT1G60000.1 45.122 82 45 0 2 83 173 254 5.98e-17 75.1
Msa0386800 AT3G08000.1 44.048 84 47 0 7 90 42 125 6.84e-17 72.4
Msa0386800 AT5G59865.1 45.679 81 44 0 7 87 27 107 7.84e-17 71.6
Msa0386800 AT1G22910.3 44.086 93 46 2 7 94 14 105 1.91e-16 74.7
Msa0386800 AT1G20880.2 46.053 76 40 1 7 82 25 99 2.10e-16 73.9
Msa0386800 AT1G20880.3 46.053 76 40 1 7 82 25 99 2.10e-16 73.9
Msa0386800 AT1G20880.1 46.053 76 40 1 7 82 25 99 2.10e-16 73.9
Msa0386800 AT3G07810.1 40.506 79 45 1 7 85 7 83 2.96e-16 74.7
Msa0386800 AT3G07810.2 40.506 79 45 1 7 85 7 83 3.02e-16 74.7
Msa0386800 AT1G22330.1 41.176 102 50 3 7 99 18 118 4.95e-16 73.2
Msa0386800 AT1G76460.1 46.053 76 40 1 7 82 25 99 8.11e-16 72.4
Msa0386800 AT1G33470.3 46.753 77 38 2 7 82 8 82 9.31e-16 71.6
Msa0386800 AT1G33470.2 46.753 77 38 2 7 82 8 82 1.04e-15 71.6
Msa0386800 AT1G33470.1 46.753 77 38 2 7 82 8 82 1.07e-15 71.6
Msa0386800 AT3G46020.1 38.272 81 50 0 4 84 5 85 1.62e-15 67.8
Msa0386800 AT2G33410.1 37.975 79 47 1 7 85 7 83 3.21e-15 71.6
Msa0386800 AT1G78260.1 43.421 76 42 1 7 82 18 92 5.04e-15 70.1
Msa0386800 AT5G55550.5 39.241 79 46 1 7 85 7 83 5.64e-15 70.9
Msa0386800 AT5G55550.4 39.241 79 46 1 7 85 7 83 5.64e-15 70.9
Msa0386800 AT5G55550.9 39.241 79 46 1 7 85 7 83 5.64e-15 70.9
Msa0386800 AT5G55550.7 39.241 79 46 1 7 85 7 83 5.64e-15 70.9
Msa0386800 AT5G55550.1 39.241 79 46 1 7 85 7 83 5.64e-15 70.9
Msa0386800 AT4G26650.2 37.975 79 47 1 7 85 13 89 6.18e-15 70.9
Msa0386800 AT4G26650.1 37.975 79 47 1 7 85 16 92 6.38e-15 70.9
Msa0386800 AT5G55550.2 39.241 79 46 1 7 85 7 83 7.42e-15 70.5
Msa0386800 AT5G55550.3 39.241 79 46 1 7 85 7 83 7.42e-15 70.5
Msa0386800 AT5G55550.6 39.241 79 46 1 7 85 7 83 7.42e-15 70.5
Msa0386800 AT5G55550.11 39.241 79 46 1 7 85 7 83 7.42e-15 70.5
Msa0386800 AT1G78260.2 43.421 76 42 1 7 82 18 92 8.85e-15 69.3
Msa0386800 AT4G14300.1 37.975 79 47 1 7 85 7 83 1.05e-14 70.1
Msa0386800 AT4G14300.1 32.911 79 52 1 7 85 111 188 6.68e-11 59.3
Msa0386800 AT4G14300.2 37.975 79 47 1 7 85 7 83 1.05e-14 70.1
Msa0386800 AT4G14300.2 32.911 79 52 1 7 85 111 188 6.68e-11 59.3
Msa0386800 AT1G73530.1 36.250 80 51 0 7 86 78 157 3.62e-14 66.2
Msa0386800 AT5G54580.1 44.048 84 47 0 2 85 52 135 4.66e-14 65.5
Msa0386800 AT1G01080.1 41.463 82 45 2 1 81 207 286 6.16e-14 67.4
Msa0386800 AT1G01080.2 41.463 82 45 2 1 81 208 287 6.59e-14 67.4
Msa0386800 AT5G55550.8 40.845 71 40 1 7 77 7 75 9.65e-14 67.4
Msa0386800 AT2G23350.1 48.611 72 36 1 8 79 136 206 1.06e-13 67.4
Msa0386800 AT3G13224.2 32.584 89 60 0 7 95 110 198 1.06e-13 67.0
Msa0386800 AT3G13224.2 34.940 83 52 1 7 89 20 100 3.44e-13 65.5
Msa0386800 AT5G55550.10 40.845 71 40 1 7 77 7 75 1.17e-13 67.0
Msa0386800 AT5G53720.1 43.590 78 43 1 5 82 8 84 1.19e-13 63.2
Msa0386800 AT3G20930.1 37.500 80 50 0 7 86 283 362 1.19e-13 67.0
Msa0386800 AT2G27330.1 29.348 92 65 0 8 99 23 114 1.31e-13 63.5
Msa0386800 AT3G13224.3 32.584 89 60 0 7 95 101 189 1.56e-13 66.6
Msa0386800 AT3G13224.3 34.409 93 55 2 1 89 1 91 1.79e-13 66.2
Msa0386800 AT3G54770.3 42.105 76 43 1 7 82 18 92 3.26e-13 65.1
Msa0386800 AT3G54770.1 42.105 76 43 1 7 82 18 92 3.40e-13 65.1
Msa0386800 AT5G47620.1 35.443 79 49 1 7 85 7 83 4.27e-13 65.5
Msa0386800 AT5G47620.2 35.443 79 49 1 7 85 7 83 4.27e-13 65.5
Msa0386800 AT5G47620.5 35.443 79 49 1 7 85 7 83 4.27e-13 65.5
Msa0386800 AT4G13860.2 47.458 59 31 0 22 80 2 60 4.45e-13 60.8
Msa0386800 AT3G52150.2 44.156 77 43 0 6 82 177 253 6.04e-13 64.3
Msa0386800 AT3G52150.1 44.156 77 43 0 6 82 177 253 6.04e-13 64.3
Msa0386800 AT1G17640.2 38.750 80 47 1 7 86 67 144 7.15e-13 64.7
Msa0386800 AT1G17640.2 32.292 96 65 0 7 102 158 253 8.78e-13 64.7
Msa0386800 AT1G17640.1 38.750 80 47 1 7 86 67 144 7.15e-13 64.7
Msa0386800 AT1G17640.1 32.292 96 65 0 7 102 158 253 8.78e-13 64.7
Msa0386800 AT1G17640.3 38.750 80 47 1 7 86 67 144 7.15e-13 64.7
Msa0386800 AT1G17640.3 32.292 96 65 0 7 102 158 253 8.78e-13 64.7
Msa0386800 AT2G18510.1 40.964 83 48 1 8 89 114 196 1.51e-12 63.9
Msa0386800 AT2G37510.2 38.384 99 36 1 7 80 35 133 1.63e-12 61.6
Msa0386800 AT5G53680.1 49.254 67 27 2 7 66 14 80 2.26e-12 61.2
Msa0386800 AT3G14100.1 41.026 78 46 0 5 82 143 220 2.53e-12 63.2
Msa0386800 AT5G40490.1 31.522 92 63 0 7 98 131 222 3.71e-12 62.8
Msa0386800 AT5G51300.1 42.308 78 45 0 5 82 479 556 4.37e-12 62.8
Msa0386800 AT5G51300.2 42.308 78 45 0 5 82 479 556 4.37e-12 62.8
Msa0386800 AT5G51300.3 42.308 78 45 0 5 82 479 556 4.37e-12 62.8
Msa0386800 AT1G54080.1 41.026 78 46 0 5 82 147 224 4.69e-12 62.4
Msa0386800 AT5G47620.4 36.111 72 44 1 7 78 7 76 5.52e-12 62.4
Msa0386800 AT3G13224.1 31.633 98 65 1 7 104 20 115 5.92e-12 61.2
Msa0386800 AT5G11412.1 42.105 76 43 1 7 82 53 127 9.36e-12 59.7
Msa0386800 AT5G40490.2 31.522 92 63 0 7 98 114 205 1.07e-11 61.6
Msa0386800 AT2G22100.1 38.272 81 49 1 8 88 165 244 1.43e-11 61.2
Msa0386800 AT3G20930.2 35.294 85 50 1 7 86 283 367 1.64e-11 60.8
Msa0386800 AT2G19380.1 45.614 57 31 0 9 65 411 467 1.95e-11 60.8
Msa0386800 AT2G22090.2 39.080 87 51 2 7 93 105 189 2.28e-11 60.5
Msa0386800 AT2G22090.1 39.080 87 51 2 7 93 105 189 2.78e-11 60.1
Msa0386800 AT1G01080.3 42.857 56 32 0 1 56 207 262 4.48e-11 59.3
Msa0386800 AT3G52380.1 36.250 80 51 0 6 85 219 298 9.65e-11 58.5

Find 99 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTCCGCCATGGAAAT+TGG 0.191164 3_1:+90600640 None:intergenic
TAGCACTTTGGTGCCATTAA+TGG 0.248676 3_1:+90599410 None:intergenic
CATTAATGGTCCAGATTTAA+TGG 0.249367 3_1:-90599440 Msa0386800:three_prime_UTR
ATTCCAAATCTAAACCAATT+TGG 0.260003 3_1:+90599738 None:intergenic
GAAATTGAATGTTCTGAATA+TGG 0.263824 3_1:-90599777 Msa0386800:three_prime_UTR
TAATGGCACGGTGCCATTAA+TGG 0.272692 3_1:-90599423 Msa0386800:three_prime_UTR
TAATGGCACGGTGCCATTAA+TGG 0.272692 3_1:+90599526 None:intergenic
TAGCACTTTGGTGCCATTAA+TGG 0.275309 3_1:-90599539 Msa0386800:three_prime_UTR
AATTGGGGAAAGGGTTAAAA+TGG 0.277694 3_1:+90600657 None:intergenic
AAACACATTGCCATTGCATC+TGG 0.285056 3_1:-90599489 Msa0386800:three_prime_UTR
CATTAAATCTGGACCATTAA+TGG 0.286162 3_1:+90599441 None:intergenic
TATCTGTTATTATGCCAAAT+TGG 0.291052 3_1:-90599752 Msa0386800:three_prime_UTR
ATCTATCTTGATACCATTAA+TGG 0.291250 3_1:-90599454 Msa0386800:three_prime_UTR
ACTGGAAGATCAAGAGGATT+TGG 0.294131 3_1:-90600231 Msa0386800:CDS
ATGCCAAATTGGTTTAGATT+TGG 0.298687 3_1:-90599741 Msa0386800:three_prime_UTR
CGCGGAGGTGGTGGTGGATA+TGG 0.305180 3_1:-90600072 Msa0386800:CDS
CGTCGTGGAGGTGGTGGATA+TGG 0.314693 3_1:-90600036 Msa0386800:CDS
TGGCACCGTGCCATTAAATC+TGG 0.334613 3_1:-90599519 Msa0386800:three_prime_UTR
CAACTTCCGCCATGGAAATT+GGG 0.336480 3_1:+90600641 None:intergenic
AAATAAACAGCATAAAGTTT+TGG 0.339669 3_1:+90599613 None:intergenic
TTTGTGTGACCCAGATTTAA+TGG 0.343430 3_1:+90599509 None:intergenic
GTTATCACCGATCGTGAAAC+TGG 0.362798 3_1:-90600249 Msa0386800:CDS
ATCACCGCCTCTCGAGTATC+TGG 0.373006 3_1:+90599867 None:intergenic
GGCAGTGGCGGAGGCGGTGG+TGG 0.383736 3_1:-90600102 Msa0386800:CDS
CGTGGCAGTGGCGGAGGCGG+TGG 0.400483 3_1:-90600105 Msa0386800:CDS
TGGCACCGTGCCATTAAATC+TGG 0.410759 3_1:+90599430 None:intergenic
GGATACCGCGGAGGTGGTGG+TGG 0.412147 3_1:-90600078 Msa0386800:CDS
AGTGGCGGAGGCGGTGGTGG+TGG 0.416050 3_1:-90600099 Msa0386800:CDS
GGTGGTGGATATGGCGGAGG+TGG 0.417575 3_1:-90600063 Msa0386800:CDS
GGTGGATACCGCGGAGGTGG+TGG 0.418043 3_1:-90600081 Msa0386800:CDS
CGCCATGGAAATTGGGGAAA+GGG 0.422744 3_1:+90600648 None:intergenic
GTGTTTGTGGTTCTGAGTAT+TGG 0.436138 3_1:-90599714 Msa0386800:three_prime_UTR
GGTGGTGAACGTCGTGGAGG+TGG 0.450443 3_1:-90600045 Msa0386800:CDS
TAGATTTGGAATTGTGTTTG+TGG 0.450563 3_1:-90599727 Msa0386800:three_prime_UTR
CAGAGTCGTGGCAGTGGCGG+AGG 0.453358 3_1:-90600111 Msa0386800:CDS
AGTCGTGGCAGTGGCGGAGG+CGG 0.456959 3_1:-90600108 Msa0386800:CDS
GTGGCTCTGACAGTAGAAAC+TGG 0.459380 3_1:-90599840 Msa0386800:CDS
GTTGAATACCGATGCTTTGT+TGG 0.464495 3_1:-90600622 Msa0386800:CDS
CTTTGTTGGTGGACTTGCAT+GGG 0.465470 3_1:-90600608 Msa0386800:CDS
GGATATGGTGGAGGTGGCTA+CGG 0.473053 3_1:-90599901 Msa0386800:intron
GGTGGTGGATACCGCGGAGG+TGG 0.479842 3_1:-90600084 Msa0386800:CDS
AACCCTTTCCCCAATTTCCA+TGG 0.491236 3_1:-90600650 Msa0386800:exon
CTCAAGAGCTTCGTTGTCAG+TGG 0.495714 3_1:+90600585 None:intergenic
GGTGGTGGTGGATATGGCGG+AGG 0.496613 3_1:-90600066 Msa0386800:CDS
GTTCATATGAACAAACAATC+AGG 0.500693 3_1:+90599668 None:intergenic
GCGATGAAAGATGCGATTGA+AGG 0.503882 3_1:-90600183 Msa0386800:CDS
ATGAACGGCCAAGATCTTGA+TGG 0.505893 3_1:-90600159 Msa0386800:CDS
GGTGGAGGTGGCTACGGAGA+TGG 0.509409 3_1:-90599895 Msa0386800:intron
TGTCACATTCTCTACGGAGC+AGG 0.509697 3_1:-90600205 Msa0386800:CDS
TTCACTGACGGGTAGCACTT+TGG 0.509972 3_1:+90599398 None:intergenic
CGTGGAGGTGGTGGATATGG+TGG 0.512534 3_1:-90600033 Msa0386800:CDS
GGTGAACGTCGTGGAGGTGG+TGG 0.516929 3_1:-90600042 Msa0386800:CDS
GCTTTGTTGGTGGACTTGCA+TGG 0.519425 3_1:-90600609 Msa0386800:CDS
TGGATTTGTCACATTCTCTA+CGG 0.520808 3_1:-90600211 Msa0386800:CDS
TGATCTTCCAGTTTCACGAT+CGG 0.521619 3_1:+90600242 None:intergenic
GAGGCTCAGAGTCGTGGCAG+TGG 0.522443 3_1:-90600117 Msa0386800:CDS
TGTTACGTCCATCAAGATCT+TGG 0.527371 3_1:+90600151 None:intergenic
TCGAGAGGCGGTGATGGCGG+TGG 0.528930 3_1:-90599859 Msa0386800:CDS
AACTTCCGCCATGGAAATTG+GGG 0.531831 3_1:+90600642 None:intergenic
ATTGGGGAAAGGGTTAAAAT+GGG 0.532461 3_1:+90600658 None:intergenic
GGAGGTGGTGGATATGGTGG+AGG 0.534655 3_1:-90600030 Msa0386800:intron
TTTATTCATACTTAGTCAGT+GGG 0.536471 3_1:-90599562 Msa0386800:three_prime_UTR
CCGCCATGGAAATTGGGGAA+AGG 0.539529 3_1:+90600647 None:intergenic
CGATGAAAGATGCGATTGAA+GGG 0.542649 3_1:-90600182 Msa0386800:CDS
TGGTGAAATCGTCGAATCGA+AGG 0.542807 3_1:-90600545 Msa0386800:intron
GCTCAGAGTCGTGGCAGTGG+CGG 0.545233 3_1:-90600114 Msa0386800:CDS
CGATTCGACGATTTCACCAA+AGG 0.547099 3_1:+90600549 None:intergenic
TTAGTCAGTGGGTAGCACTT+TGG 0.553153 3_1:-90599551 Msa0386800:three_prime_UTR
AGATACTCGAGAGGCGGTGA+TGG 0.555850 3_1:-90599865 Msa0386800:CDS
GGAGGTGGCTACGGAGATGG+TGG 0.556120 3_1:-90599892 Msa0386800:intron
AACACATTGCCATTGCATCT+GGG 0.558369 3_1:-90599488 Msa0386800:three_prime_UTR
TTGGTTTCGTGTTCTTCATG+TGG 0.561892 3_1:-90599695 Msa0386800:three_prime_UTR
ATCAAGATAGATGTGTTGTA+TGG 0.562778 3_1:+90599465 None:intergenic
CTTATAGTAGCAATAGAGTA+CGG 0.563266 3_1:+90599585 None:intergenic
CAGTTCATCAAATGAATAGT+CGG 0.565020 3_1:-90599646 Msa0386800:three_prime_UTR
GGCACCGTGCCATTAAATCT+GGG 0.569255 3_1:-90599518 Msa0386800:three_prime_UTR
CGTGAAACTGGAAGATCAAG+AGG 0.575579 3_1:-90600237 Msa0386800:CDS
GAATACCGATGCTTTGTTGG+TGG 0.577401 3_1:-90600619 Msa0386800:CDS
TACTCGAGAGGCGGTGATGG+CGG 0.579779 3_1:-90599862 Msa0386800:CDS
GTTTATTCATACTTAGTCAG+TGG 0.580848 3_1:-90599563 Msa0386800:three_prime_UTR
ACGTAACATCACTGTGAATG+AGG 0.581570 3_1:-90600136 Msa0386800:CDS
TCGGTATTCAACTTCCGCCA+TGG 0.595134 3_1:+90600633 None:intergenic
GGAGGTGGTGGTGGATATGG+CGG 0.597374 3_1:-90600069 Msa0386800:CDS
GGCGGTGGTGGTGGATACCG+CGG 0.616563 3_1:-90600090 Msa0386800:CDS
CTCTGACAGTAGAAACTGGA+GGG 0.619176 3_1:-90599836 Msa0386800:CDS
GATGCGATTGAAGGGATGAA+CGG 0.619661 3_1:-90600174 Msa0386800:CDS
GTGAATGAGGCTCAGAGTCG+TGG 0.619893 3_1:-90600123 Msa0386800:CDS
CAAGTCCACCAACAAAGCAT+CGG 0.636350 3_1:+90600614 None:intergenic
GGCTCCAGATACTCGAGAGG+CGG 0.636811 3_1:-90599871 Msa0386800:CDS
GGAGGTGGTGAACGTCGTGG+AGG 0.637604 3_1:-90600048 Msa0386800:CDS
ATGGTCCAGATTTAATGGCA+CGG 0.642422 3_1:-90599435 Msa0386800:three_prime_UTR
GTTGTATGGCCCAGATGCAA+TGG 0.645093 3_1:+90599479 None:intergenic
GGCGGAGGTGGTGAACGTCG+TGG 0.655000 3_1:-90600051 Msa0386800:CDS
GGTGGTGGTGGATACCGCGG+AGG 0.669154 3_1:-90600087 Msa0386800:CDS
CCTTTCCCCAATTTCCATGG+CGG 0.683414 3_1:-90600647 Msa0386800:exon
GTGACCCAGATTTAATGGCA+CGG 0.695979 3_1:+90599514 None:intergenic
CATATCCACCACCACCTCCG+CGG 0.713479 3_1:+90600073 None:intergenic
GCTCTGACAGTAGAAACTGG+AGG 0.714944 3_1:-90599837 Msa0386800:CDS
GGTGGCTCCAGATACTCGAG+AGG 0.728248 3_1:-90599874 Msa0386800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTAATCACTTCAAAT+CGG - chr3_1:90599735-90599754 Msa0386800:three_prime_UTR 15.0%
!!! TTTTATTAATCACTTCAAAT+CGG - chr3_1:90599735-90599754 Msa0386800:three_prime_UTR 15.0%
!!! AAATAAACAGCATAAAGTTT+TGG + chr3_1:90600509-90600528 None:intergenic 20.0%
!!! AAATAAACAGCATAAAGTTT+TGG + chr3_1:90600509-90600528 None:intergenic 20.0%
!!! ACGATTCTTTGTTTTTGTTT+AGG - chr3_1:90599848-90599867 Msa0386800:CDS 25.0%
!! GAAATTGAATGTTCTGAATA+TGG - chr3_1:90600342-90600361 Msa0386800:intron 25.0%
! TATCTGTTATTATGCCAAAT+TGG - chr3_1:90600367-90600386 Msa0386800:intron 25.0%
! ATTCCAAATCTAAACCAATT+TGG + chr3_1:90600384-90600403 None:intergenic 25.0%
! TTTATTCATACTTAGTCAGT+GGG - chr3_1:90600557-90600576 Msa0386800:CDS 25.0%
! ATCTATCTTGATACCATTAA+TGG - chr3_1:90600665-90600684 Msa0386800:five_prime_UTR 25.0%
!!! ACGATTCTTTGTTTTTGTTT+AGG - chr3_1:90599848-90599867 Msa0386800:CDS 25.0%
!! GAAATTGAATGTTCTGAATA+TGG - chr3_1:90600342-90600361 Msa0386800:intron 25.0%
! TATCTGTTATTATGCCAAAT+TGG - chr3_1:90600367-90600386 Msa0386800:intron 25.0%
! ATTCCAAATCTAAACCAATT+TGG + chr3_1:90600384-90600403 None:intergenic 25.0%
! TTTATTCATACTTAGTCAGT+GGG - chr3_1:90600557-90600576 Msa0386800:CDS 25.0%
! ATCTATCTTGATACCATTAA+TGG - chr3_1:90600665-90600684 Msa0386800:five_prime_UTR 25.0%
TGTGTAAATTGAAGATCGAT+CGG - chr3_1:90599776-90599795 Msa0386800:three_prime_UTR 30.0%
! ATGCCAAATTGGTTTAGATT+TGG - chr3_1:90600378-90600397 Msa0386800:intron 30.0%
! TAGATTTGGAATTGTGTTTG+TGG - chr3_1:90600392-90600411 Msa0386800:intron 30.0%
GTTCATATGAACAAACAATC+AGG + chr3_1:90600454-90600473 None:intergenic 30.0%
CAGTTCATCAAATGAATAGT+CGG - chr3_1:90600473-90600492 Msa0386800:intron 30.0%
CTTATAGTAGCAATAGAGTA+CGG + chr3_1:90600537-90600556 None:intergenic 30.0%
GTTTATTCATACTTAGTCAG+TGG - chr3_1:90600556-90600575 Msa0386800:CDS 30.0%
ATCAAGATAGATGTGTTGTA+TGG + chr3_1:90600657-90600676 None:intergenic 30.0%
CATTAAATCTGGACCATTAA+TGG + chr3_1:90600681-90600700 None:intergenic 30.0%
CATTAATGGTCCAGATTTAA+TGG - chr3_1:90600679-90600698 Msa0386800:five_prime_UTR 30.0%
TGTGTAAATTGAAGATCGAT+CGG - chr3_1:90599776-90599795 Msa0386800:three_prime_UTR 30.0%
! ATGCCAAATTGGTTTAGATT+TGG - chr3_1:90600378-90600397 Msa0386800:intron 30.0%
! TAGATTTGGAATTGTGTTTG+TGG - chr3_1:90600392-90600411 Msa0386800:intron 30.0%
GTTCATATGAACAAACAATC+AGG + chr3_1:90600454-90600473 None:intergenic 30.0%
CAGTTCATCAAATGAATAGT+CGG - chr3_1:90600473-90600492 Msa0386800:intron 30.0%
CTTATAGTAGCAATAGAGTA+CGG + chr3_1:90600537-90600556 None:intergenic 30.0%
GTTTATTCATACTTAGTCAG+TGG - chr3_1:90600556-90600575 Msa0386800:CDS 30.0%
ATCAAGATAGATGTGTTGTA+TGG + chr3_1:90600657-90600676 None:intergenic 30.0%
CATTAAATCTGGACCATTAA+TGG + chr3_1:90600681-90600700 None:intergenic 30.0%
CATTAATGGTCCAGATTTAA+TGG - chr3_1:90600679-90600698 Msa0386800:five_prime_UTR 30.0%
ATTGGGGAAAGGGTTAAAAT+GGG + chr3_1:90599464-90599483 None:intergenic 35.0%
AATTGGGGAAAGGGTTAAAA+TGG + chr3_1:90599465-90599484 None:intergenic 35.0%
TGGATTTGTCACATTCTCTA+CGG - chr3_1:90599908-90599927 Msa0386800:intron 35.0%
TTTGTGTGACCCAGATTTAA+TGG + chr3_1:90600613-90600632 None:intergenic 35.0%
ATTGGGGAAAGGGTTAAAAT+GGG + chr3_1:90599464-90599483 None:intergenic 35.0%
AATTGGGGAAAGGGTTAAAA+TGG + chr3_1:90599465-90599484 None:intergenic 35.0%
TGGATTTGTCACATTCTCTA+CGG - chr3_1:90599908-90599927 Msa0386800:intron 35.0%
TTTGTGTGACCCAGATTTAA+TGG + chr3_1:90600613-90600632 None:intergenic 35.0%
GTTGAATACCGATGCTTTGT+TGG - chr3_1:90599497-90599516 Msa0386800:three_prime_UTR 40.0%
!!! GAGAAAGCGTTTTCTTCCTT+TGG - chr3_1:90599554-90599573 Msa0386800:three_prime_UTR 40.0%
TTTCCGATCTCAGCAACAAA+CGG + chr3_1:90599601-90599620 None:intergenic 40.0%
ATCGGAAATCTGACACGATT+CGG - chr3_1:90599613-90599632 Msa0386800:three_prime_UTR 40.0%
! AATCTGACACGATTCGGATT+TGG - chr3_1:90599619-90599638 Msa0386800:three_prime_UTR 40.0%
ACAACACAGAACAGAACAGA+AGG + chr3_1:90599658-90599677 None:intergenic 40.0%
TGATCTTCCAGTTTCACGAT+CGG + chr3_1:90599880-90599899 None:intergenic 40.0%
ACTGGAAGATCAAGAGGATT+TGG - chr3_1:90599888-90599907 Msa0386800:CDS 40.0%
CGATGAAAGATGCGATTGAA+GGG - chr3_1:90599937-90599956 Msa0386800:intron 40.0%
TGTTACGTCCATCAAGATCT+TGG + chr3_1:90599971-90599990 None:intergenic 40.0%
ACGTAACATCACTGTGAATG+AGG - chr3_1:90599983-90600002 Msa0386800:intron 40.0%
!! GTGTTTGTGGTTCTGAGTAT+TGG - chr3_1:90600405-90600424 Msa0386800:intron 40.0%
TTGGTTTCGTGTTCTTCATG+TGG - chr3_1:90600424-90600443 Msa0386800:intron 40.0%
!! TAGCACTTTGGTGCCATTAA+TGG - chr3_1:90600580-90600599 Msa0386800:CDS 40.0%
AAACACATTGCCATTGCATC+TGG - chr3_1:90600630-90600649 Msa0386800:CDS 40.0%
AACACATTGCCATTGCATCT+GGG - chr3_1:90600631-90600650 Msa0386800:CDS 40.0%
ATGGTCCAGATTTAATGGCA+CGG - chr3_1:90600684-90600703 Msa0386800:five_prime_UTR 40.0%
GTTGAATACCGATGCTTTGT+TGG - chr3_1:90599497-90599516 Msa0386800:three_prime_UTR 40.0%
!!! GAGAAAGCGTTTTCTTCCTT+TGG - chr3_1:90599554-90599573 Msa0386800:three_prime_UTR 40.0%
TTTCCGATCTCAGCAACAAA+CGG + chr3_1:90599601-90599620 None:intergenic 40.0%
ATCGGAAATCTGACACGATT+CGG - chr3_1:90599613-90599632 Msa0386800:three_prime_UTR 40.0%
! AATCTGACACGATTCGGATT+TGG - chr3_1:90599619-90599638 Msa0386800:three_prime_UTR 40.0%
ACAACACAGAACAGAACAGA+AGG + chr3_1:90599658-90599677 None:intergenic 40.0%
TGATCTTCCAGTTTCACGAT+CGG + chr3_1:90599880-90599899 None:intergenic 40.0%
ACTGGAAGATCAAGAGGATT+TGG - chr3_1:90599888-90599907 Msa0386800:CDS 40.0%
CGATGAAAGATGCGATTGAA+GGG - chr3_1:90599937-90599956 Msa0386800:intron 40.0%
TGTTACGTCCATCAAGATCT+TGG + chr3_1:90599971-90599990 None:intergenic 40.0%
ACGTAACATCACTGTGAATG+AGG - chr3_1:90599983-90600002 Msa0386800:intron 40.0%
!! GTGTTTGTGGTTCTGAGTAT+TGG - chr3_1:90600405-90600424 Msa0386800:intron 40.0%
TTGGTTTCGTGTTCTTCATG+TGG - chr3_1:90600424-90600443 Msa0386800:intron 40.0%
!! TAGCACTTTGGTGCCATTAA+TGG - chr3_1:90600580-90600599 Msa0386800:CDS 40.0%
AAACACATTGCCATTGCATC+TGG - chr3_1:90600630-90600649 Msa0386800:CDS 40.0%
AACACATTGCCATTGCATCT+GGG - chr3_1:90600631-90600650 Msa0386800:CDS 40.0%
ATGGTCCAGATTTAATGGCA+CGG - chr3_1:90600684-90600703 Msa0386800:five_prime_UTR 40.0%
AACCCTTTCCCCAATTTCCA+TGG - chr3_1:90599469-90599488 Msa0386800:three_prime_UTR 45.0%
AACTTCCGCCATGGAAATTG+GGG + chr3_1:90599480-90599499 None:intergenic 45.0%
CAACTTCCGCCATGGAAATT+GGG + chr3_1:90599481-90599500 None:intergenic 45.0%
TCAACTTCCGCCATGGAAAT+TGG + chr3_1:90599482-90599501 None:intergenic 45.0%
! GAATACCGATGCTTTGTTGG+TGG - chr3_1:90599500-90599519 Msa0386800:three_prime_UTR 45.0%
CAAGTCCACCAACAAAGCAT+CGG + chr3_1:90599508-90599527 None:intergenic 45.0%
!! CTTTGTTGGTGGACTTGCAT+GGG - chr3_1:90599511-90599530 Msa0386800:three_prime_UTR 45.0%
CGATTCGACGATTTCACCAA+AGG + chr3_1:90599573-90599592 None:intergenic 45.0%
TGGTGAAATCGTCGAATCGA+AGG - chr3_1:90599574-90599593 Msa0386800:three_prime_UTR 45.0%
GTTATCACCGATCGTGAAAC+TGG - chr3_1:90599870-90599889 Msa0386800:CDS 45.0%
CGTGAAACTGGAAGATCAAG+AGG - chr3_1:90599882-90599901 Msa0386800:CDS 45.0%
GCGATGAAAGATGCGATTGA+AGG - chr3_1:90599936-90599955 Msa0386800:intron 45.0%
GATGCGATTGAAGGGATGAA+CGG - chr3_1:90599945-90599964 Msa0386800:intron 45.0%
ATGAACGGCCAAGATCTTGA+TGG - chr3_1:90599960-90599979 Msa0386800:intron 45.0%
CTCTGACAGTAGAAACTGGA+GGG - chr3_1:90600283-90600302 Msa0386800:intron 45.0%
TTAGTCAGTGGGTAGCACTT+TGG - chr3_1:90600568-90600587 Msa0386800:CDS 45.0%
!! TAATGGCACGGTGCCATTAA+TGG + chr3_1:90600696-90600715 None:intergenic 45.0%
GTGACCCAGATTTAATGGCA+CGG + chr3_1:90600608-90600627 None:intergenic 45.0%
!! TAATGGCACGGTGCCATTAA+TGG - chr3_1:90600696-90600715 Msa0386800:five_prime_UTR 45.0%
AACCCTTTCCCCAATTTCCA+TGG - chr3_1:90599469-90599488 Msa0386800:three_prime_UTR 45.0%
AACTTCCGCCATGGAAATTG+GGG + chr3_1:90599480-90599499 None:intergenic 45.0%
CAACTTCCGCCATGGAAATT+GGG + chr3_1:90599481-90599500 None:intergenic 45.0%
TCAACTTCCGCCATGGAAAT+TGG + chr3_1:90599482-90599501 None:intergenic 45.0%
! GAATACCGATGCTTTGTTGG+TGG - chr3_1:90599500-90599519 Msa0386800:three_prime_UTR 45.0%
CAAGTCCACCAACAAAGCAT+CGG + chr3_1:90599508-90599527 None:intergenic 45.0%
!! CTTTGTTGGTGGACTTGCAT+GGG - chr3_1:90599511-90599530 Msa0386800:three_prime_UTR 45.0%
CGATTCGACGATTTCACCAA+AGG + chr3_1:90599573-90599592 None:intergenic 45.0%
TGGTGAAATCGTCGAATCGA+AGG - chr3_1:90599574-90599593 Msa0386800:three_prime_UTR 45.0%
GTTATCACCGATCGTGAAAC+TGG - chr3_1:90599870-90599889 Msa0386800:CDS 45.0%
CGTGAAACTGGAAGATCAAG+AGG - chr3_1:90599882-90599901 Msa0386800:CDS 45.0%
GCGATGAAAGATGCGATTGA+AGG - chr3_1:90599936-90599955 Msa0386800:intron 45.0%
GATGCGATTGAAGGGATGAA+CGG - chr3_1:90599945-90599964 Msa0386800:intron 45.0%
ATGAACGGCCAAGATCTTGA+TGG - chr3_1:90599960-90599979 Msa0386800:intron 45.0%
CTCTGACAGTAGAAACTGGA+GGG - chr3_1:90600283-90600302 Msa0386800:intron 45.0%
TTAGTCAGTGGGTAGCACTT+TGG - chr3_1:90600568-90600587 Msa0386800:CDS 45.0%
!! TAATGGCACGGTGCCATTAA+TGG + chr3_1:90600696-90600715 None:intergenic 45.0%
GTGACCCAGATTTAATGGCA+CGG + chr3_1:90600608-90600627 None:intergenic 45.0%
!! TAATGGCACGGTGCCATTAA+TGG - chr3_1:90600696-90600715 Msa0386800:five_prime_UTR 45.0%
CGCCATGGAAATTGGGGAAA+GGG + chr3_1:90599474-90599493 None:intergenic 50.0%
CCTTTCCCCAATTTCCATGG+CGG - chr3_1:90599472-90599491 Msa0386800:three_prime_UTR 50.0%
TCGGTATTCAACTTCCGCCA+TGG + chr3_1:90599489-90599508 None:intergenic 50.0%
!! GCTTTGTTGGTGGACTTGCA+TGG - chr3_1:90599510-90599529 Msa0386800:three_prime_UTR 50.0%
CTCAAGAGCTTCGTTGTCAG+TGG + chr3_1:90599537-90599556 None:intergenic 50.0%
! GGTCCGTTTGTTGCTGAGAT+CGG - chr3_1:90599595-90599614 Msa0386800:three_prime_UTR 50.0%
TGTCACATTCTCTACGGAGC+AGG - chr3_1:90599914-90599933 Msa0386800:intron 50.0%
!! GTGGCTCTGACAGTAGAAAC+TGG - chr3_1:90600279-90600298 Msa0386800:intron 50.0%
GCTCTGACAGTAGAAACTGG+AGG - chr3_1:90600282-90600301 Msa0386800:intron 50.0%
! TGGCACCGTGCCATTAAATC+TGG - chr3_1:90600600-90600619 Msa0386800:CDS 50.0%
! GGCACCGTGCCATTAAATCT+GGG - chr3_1:90600601-90600620 Msa0386800:CDS 50.0%
GTTGTATGGCCCAGATGCAA+TGG + chr3_1:90600643-90600662 None:intergenic 50.0%
! TGGCACCGTGCCATTAAATC+TGG + chr3_1:90600600-90600619 None:intergenic 50.0%
CGCCATGGAAATTGGGGAAA+GGG + chr3_1:90599474-90599493 None:intergenic 50.0%
CCTTTCCCCAATTTCCATGG+CGG - chr3_1:90599472-90599491 Msa0386800:three_prime_UTR 50.0%
TCGGTATTCAACTTCCGCCA+TGG + chr3_1:90599489-90599508 None:intergenic 50.0%
!! GCTTTGTTGGTGGACTTGCA+TGG - chr3_1:90599510-90599529 Msa0386800:three_prime_UTR 50.0%
CTCAAGAGCTTCGTTGTCAG+TGG + chr3_1:90599537-90599556 None:intergenic 50.0%
! GGTCCGTTTGTTGCTGAGAT+CGG - chr3_1:90599595-90599614 Msa0386800:three_prime_UTR 50.0%
TGTCACATTCTCTACGGAGC+AGG - chr3_1:90599914-90599933 Msa0386800:intron 50.0%
!! GTGGCTCTGACAGTAGAAAC+TGG - chr3_1:90600279-90600298 Msa0386800:intron 50.0%
GCTCTGACAGTAGAAACTGG+AGG - chr3_1:90600282-90600301 Msa0386800:intron 50.0%
! TGGCACCGTGCCATTAAATC+TGG - chr3_1:90600600-90600619 Msa0386800:CDS 50.0%
! GGCACCGTGCCATTAAATCT+GGG - chr3_1:90600601-90600620 Msa0386800:CDS 50.0%
GTTGTATGGCCCAGATGCAA+TGG + chr3_1:90600643-90600662 None:intergenic 50.0%
! TGGCACCGTGCCATTAAATC+TGG + chr3_1:90600600-90600619 None:intergenic 50.0%
CCGCCATGGAAATTGGGGAA+AGG + chr3_1:90599475-90599494 None:intergenic 55.0%
GTGAATGAGGCTCAGAGTCG+TGG - chr3_1:90599996-90600015 Msa0386800:intron 55.0%
!! CGTGATGGTGGTGGTGGATA+TGG - chr3_1:90600203-90600222 Msa0386800:CDS 55.0%
!! GATGGTGGTGGTGGATATGG+TGG - chr3_1:90600206-90600225 Msa0386800:CDS 55.0%
! GGATATGGTGGAGGTGGCTA+CGG - chr3_1:90600218-90600237 Msa0386800:CDS 55.0%
ATCACCGCCTCTCGAGTATC+TGG + chr3_1:90600255-90600274 None:intergenic 55.0%
AGATACTCGAGAGGCGGTGA+TGG - chr3_1:90600254-90600273 Msa0386800:intron 55.0%
CCGCCATGGAAATTGGGGAA+AGG + chr3_1:90599475-90599494 None:intergenic 55.0%
GTGAATGAGGCTCAGAGTCG+TGG - chr3_1:90599996-90600015 Msa0386800:intron 55.0%
!! CGTGATGGTGGTGGTGGATA+TGG - chr3_1:90600203-90600222 Msa0386800:CDS 55.0%
!! GATGGTGGTGGTGGATATGG+TGG - chr3_1:90600206-90600225 Msa0386800:CDS 55.0%
! GGATATGGTGGAGGTGGCTA+CGG - chr3_1:90600218-90600237 Msa0386800:CDS 55.0%
ATCACCGCCTCTCGAGTATC+TGG + chr3_1:90600255-90600274 None:intergenic 55.0%
AGATACTCGAGAGGCGGTGA+TGG - chr3_1:90600254-90600273 Msa0386800:intron 55.0%
CATATCCACCACCACCTCCG+CGG + chr3_1:90600049-90600068 None:intergenic 60.0%
!! GGAGGTGGTGGTGGATATGG+CGG - chr3_1:90600050-90600069 Msa0386800:CDS 60.0%
!! CGTCGTGGAGGTGGTGGATA+TGG - chr3_1:90600083-90600102 Msa0386800:CDS 60.0%
!! CGTGGAGGTGGTGGATATGG+TGG - chr3_1:90600086-90600105 Msa0386800:CDS 60.0%
!! GGAGGTGGTGGATATGGTGG+AGG - chr3_1:90600089-90600108 Msa0386800:CDS 60.0%
!! GGTGGTGGATATGGTGGAGG+TGG - chr3_1:90600092-90600111 Msa0386800:CDS 60.0%
! GGTGGATATGGTGGAGGTGG+CGG - chr3_1:90600095-90600114 Msa0386800:CDS 60.0%
! GTGGATATGGTGGAGGTGGC+GGG - chr3_1:90600096-90600115 Msa0386800:CDS 60.0%
! TGGATATGGTGGAGGTGGCG+GGG - chr3_1:90600097-90600116 Msa0386800:CDS 60.0%
TATGGAGGTGGTGACCGTCG+TGG - chr3_1:90600122-90600141 Msa0386800:CDS 60.0%
ATCCACCACCTCCTCCACGA+CGG + chr3_1:90600139-90600158 None:intergenic 60.0%
!! CGTGGAGGAGGTGGTGGATA+TGG - chr3_1:90600140-90600159 Msa0386800:CDS 60.0%
!! GGAGGAGGTGGTGGATATGG+TGG - chr3_1:90600143-90600162 Msa0386800:CDS 60.0%
!! GGAGGTGGTGGATATGGTGG+AGG - chr3_1:90600089-90600108 Msa0386800:CDS 60.0%
!! GGTGGTGGATATGGTGGAGG+AGG - chr3_1:90600092-90600111 Msa0386800:CDS 60.0%
! GGTGGATATGGTGGAGGAGG+CGG - chr3_1:90600152-90600171 Msa0386800:CDS 60.0%
! GTGGATATGGTGGAGGAGGC+GGG - chr3_1:90600153-90600172 Msa0386800:CDS 60.0%
! TGGATATGGTGGAGGAGGCG+GGG - chr3_1:90600154-90600173 Msa0386800:CDS 60.0%
!! GGTGGTGGTGGATATGGTGG+AGG - chr3_1:90600209-90600228 Msa0386800:CDS 60.0%
!! GGTGGTGGATATGGTGGAGG+TGG - chr3_1:90600092-90600111 Msa0386800:CDS 60.0%
GGTGGCTCCAGATACTCGAG+AGG - chr3_1:90600245-90600264 Msa0386800:CDS 60.0%
GGCTCCAGATACTCGAGAGG+CGG - chr3_1:90600248-90600267 Msa0386800:CDS 60.0%
! TACTCGAGAGGCGGTGATGG+CGG - chr3_1:90600257-90600276 Msa0386800:intron 60.0%
CATATCCACCACCACCTCCG+CGG + chr3_1:90600049-90600068 None:intergenic 60.0%
!! GGAGGTGGTGGTGGATATGG+CGG - chr3_1:90600050-90600069 Msa0386800:CDS 60.0%
!! CGTCGTGGAGGTGGTGGATA+TGG - chr3_1:90600083-90600102 Msa0386800:CDS 60.0%
!! CGTGGAGGTGGTGGATATGG+TGG - chr3_1:90600086-90600105 Msa0386800:CDS 60.0%
!! GGAGGTGGTGGATATGGTGG+AGG - chr3_1:90600089-90600108 Msa0386800:CDS 60.0%
!! GGTGGTGGATATGGTGGAGG+TGG - chr3_1:90600092-90600111 Msa0386800:CDS 60.0%
! GGTGGATATGGTGGAGGTGG+CGG - chr3_1:90600095-90600114 Msa0386800:CDS 60.0%
! GTGGATATGGTGGAGGTGGC+GGG - chr3_1:90600096-90600115 Msa0386800:CDS 60.0%
! TGGATATGGTGGAGGTGGCG+GGG - chr3_1:90600097-90600116 Msa0386800:CDS 60.0%
TATGGAGGTGGTGACCGTCG+TGG - chr3_1:90600122-90600141 Msa0386800:CDS 60.0%
ATCCACCACCTCCTCCACGA+CGG + chr3_1:90600139-90600158 None:intergenic 60.0%
!! CGTGGAGGAGGTGGTGGATA+TGG - chr3_1:90600140-90600159 Msa0386800:CDS 60.0%
!! GGAGGAGGTGGTGGATATGG+TGG - chr3_1:90600143-90600162 Msa0386800:CDS 60.0%
!! GGAGGTGGTGGATATGGTGG+AGG - chr3_1:90600089-90600108 Msa0386800:CDS 60.0%
!! GGTGGTGGATATGGTGGAGG+AGG - chr3_1:90600092-90600111 Msa0386800:CDS 60.0%
! GGTGGATATGGTGGAGGAGG+CGG - chr3_1:90600152-90600171 Msa0386800:CDS 60.0%
! GTGGATATGGTGGAGGAGGC+GGG - chr3_1:90600153-90600172 Msa0386800:CDS 60.0%
! TGGATATGGTGGAGGAGGCG+GGG - chr3_1:90600154-90600173 Msa0386800:CDS 60.0%
!! GGTGGTGGTGGATATGGTGG+AGG - chr3_1:90600209-90600228 Msa0386800:CDS 60.0%
!! GGTGGTGGATATGGTGGAGG+TGG - chr3_1:90600092-90600111 Msa0386800:CDS 60.0%
GGTGGCTCCAGATACTCGAG+AGG - chr3_1:90600245-90600264 Msa0386800:CDS 60.0%
GGCTCCAGATACTCGAGAGG+CGG - chr3_1:90600248-90600267 Msa0386800:CDS 60.0%
! TACTCGAGAGGCGGTGATGG+CGG - chr3_1:90600257-90600276 Msa0386800:intron 60.0%
GAGGCTCAGAGTCGTGGCAG+TGG - chr3_1:90600002-90600021 Msa0386800:intron 65.0%
GCTCAGAGTCGTGGCAGTGG+CGG - chr3_1:90600005-90600024 Msa0386800:intron 65.0%
!! CGCGGAGGTGGTGGTGGATA+TGG - chr3_1:90600047-90600066 Msa0386800:CDS 65.0%
!! GGTGGTGGTGGATATGGCGG+AGG - chr3_1:90600053-90600072 Msa0386800:CDS 65.0%
!! GGTGGTGGATATGGCGGAGG+TGG - chr3_1:90600056-90600075 Msa0386800:CDS 65.0%
GGAGGTGGTGAACGTCGTGG+AGG - chr3_1:90600071-90600090 Msa0386800:CDS 65.0%
GGTGGTGAACGTCGTGGAGG+TGG - chr3_1:90600074-90600093 Msa0386800:CDS 65.0%
GGTGAACGTCGTGGAGGTGG+TGG - chr3_1:90600077-90600096 Msa0386800:CDS 65.0%
! GGATATGGTGGAGGTGGCGG+GGG - chr3_1:90600098-90600117 Msa0386800:CDS 65.0%
! GGATATGGTGGAGGAGGCGG+GGG - chr3_1:90600155-90600174 Msa0386800:CDS 65.0%
!! GGTTACGGAGGTGGTGGTGG+CGG - chr3_1:90600176-90600195 Msa0386800:CDS 65.0%
!! GGACGTCGTGATGGTGGTGG+TGG - chr3_1:90600197-90600216 Msa0386800:CDS 65.0%
GGTGGAGGTGGCTACGGAGA+TGG - chr3_1:90600224-90600243 Msa0386800:CDS 65.0%
GGAGGTGGCTACGGAGATGG+TGG - chr3_1:90600227-90600246 Msa0386800:CDS 65.0%
GAGGCTCAGAGTCGTGGCAG+TGG - chr3_1:90600002-90600021 Msa0386800:intron 65.0%
GCTCAGAGTCGTGGCAGTGG+CGG - chr3_1:90600005-90600024 Msa0386800:intron 65.0%
!! CGCGGAGGTGGTGGTGGATA+TGG - chr3_1:90600047-90600066 Msa0386800:CDS 65.0%
!! GGTGGTGGTGGATATGGCGG+AGG - chr3_1:90600053-90600072 Msa0386800:CDS 65.0%
!! GGTGGTGGATATGGCGGAGG+TGG - chr3_1:90600056-90600075 Msa0386800:CDS 65.0%
GGAGGTGGTGAACGTCGTGG+AGG - chr3_1:90600071-90600090 Msa0386800:CDS 65.0%
GGTGGTGAACGTCGTGGAGG+TGG - chr3_1:90600074-90600093 Msa0386800:CDS 65.0%
GGTGAACGTCGTGGAGGTGG+TGG - chr3_1:90600077-90600096 Msa0386800:CDS 65.0%
! GGATATGGTGGAGGTGGCGG+GGG - chr3_1:90600098-90600117 Msa0386800:CDS 65.0%
! GGATATGGTGGAGGAGGCGG+GGG - chr3_1:90600155-90600174 Msa0386800:CDS 65.0%
!! GGTTACGGAGGTGGTGGTGG+CGG - chr3_1:90600176-90600195 Msa0386800:CDS 65.0%
!! GGACGTCGTGATGGTGGTGG+TGG - chr3_1:90600197-90600216 Msa0386800:CDS 65.0%
GGTGGAGGTGGCTACGGAGA+TGG - chr3_1:90600224-90600243 Msa0386800:CDS 65.0%
GGAGGTGGCTACGGAGATGG+TGG - chr3_1:90600227-90600246 Msa0386800:CDS 65.0%
CAGAGTCGTGGCAGTGGCGG+AGG - chr3_1:90600008-90600027 Msa0386800:intron 70.0%
! AGTCGTGGCAGTGGCGGAGG+CGG - chr3_1:90600011-90600030 Msa0386800:intron 70.0%
!! GGCGGTGGTGGTGGATACCG+CGG - chr3_1:90600029-90600048 Msa0386800:intron 70.0%
!! GGTGGTGGTGGATACCGCGG+AGG - chr3_1:90600032-90600051 Msa0386800:CDS 70.0%
!! GGTGGTGGATACCGCGGAGG+TGG - chr3_1:90600035-90600054 Msa0386800:CDS 70.0%
GGTGGATACCGCGGAGGTGG+TGG - chr3_1:90600038-90600057 Msa0386800:CDS 70.0%
! GGATACCGCGGAGGTGGTGG+TGG - chr3_1:90600041-90600060 Msa0386800:CDS 70.0%
GGCGGAGGTGGTGAACGTCG+TGG - chr3_1:90600068-90600087 Msa0386800:CDS 70.0%
!! GGTGGAGGTGGCGGGGGTTA+TGG - chr3_1:90600104-90600123 Msa0386800:CDS 70.0%
!! GGAGGTGGCGGGGGTTATGG+AGG - chr3_1:90600107-90600126 Msa0386800:CDS 70.0%
!! GGTGGCGGGGGTTATGGAGG+TGG - chr3_1:90600110-90600129 Msa0386800:CDS 70.0%
GGAGGTGGTGACCGTCGTGG+AGG - chr3_1:90600125-90600144 Msa0386800:CDS 70.0%
GGTGGTGACCGTCGTGGAGG+AGG - chr3_1:90600128-90600147 Msa0386800:CDS 70.0%
GGTGACCGTCGTGGAGGAGG+TGG - chr3_1:90600131-90600150 Msa0386800:CDS 70.0%
GACCGTCGTGGAGGAGGTGG+TGG - chr3_1:90600134-90600153 Msa0386800:CDS 70.0%
GGTGGAGGAGGCGGGGGTTA+CGG - chr3_1:90600161-90600180 Msa0386800:CDS 70.0%
! GGGGGTTACGGAGGTGGTGG+TGG - chr3_1:90600173-90600192 Msa0386800:CDS 70.0%
!! GGTGGTGGCGGACGTCGTGA+TGG - chr3_1:90600188-90600207 Msa0386800:CDS 70.0%
!! GGTGGCGGACGTCGTGATGG+TGG - chr3_1:90600191-90600210 Msa0386800:CDS 70.0%
!! GGCGGACGTCGTGATGGTGG+TGG - chr3_1:90600194-90600213 Msa0386800:CDS 70.0%
!! TCGAGAGGCGGTGATGGCGG+TGG - chr3_1:90600260-90600279 Msa0386800:intron 70.0%
CAGAGTCGTGGCAGTGGCGG+AGG - chr3_1:90600008-90600027 Msa0386800:intron 70.0%
! AGTCGTGGCAGTGGCGGAGG+CGG - chr3_1:90600011-90600030 Msa0386800:intron 70.0%
!! GGCGGTGGTGGTGGATACCG+CGG - chr3_1:90600029-90600048 Msa0386800:intron 70.0%
!! GGTGGTGGTGGATACCGCGG+AGG - chr3_1:90600032-90600051 Msa0386800:CDS 70.0%
!! GGTGGTGGATACCGCGGAGG+TGG - chr3_1:90600035-90600054 Msa0386800:CDS 70.0%
GGTGGATACCGCGGAGGTGG+TGG - chr3_1:90600038-90600057 Msa0386800:CDS 70.0%
! GGATACCGCGGAGGTGGTGG+TGG - chr3_1:90600041-90600060 Msa0386800:CDS 70.0%
GGCGGAGGTGGTGAACGTCG+TGG - chr3_1:90600068-90600087 Msa0386800:CDS 70.0%
!! GGTGGAGGTGGCGGGGGTTA+TGG - chr3_1:90600104-90600123 Msa0386800:CDS 70.0%
!! GGAGGTGGCGGGGGTTATGG+AGG - chr3_1:90600107-90600126 Msa0386800:CDS 70.0%
!! GGTGGCGGGGGTTATGGAGG+TGG - chr3_1:90600110-90600129 Msa0386800:CDS 70.0%
GGAGGTGGTGACCGTCGTGG+AGG - chr3_1:90600125-90600144 Msa0386800:CDS 70.0%
GGTGGTGACCGTCGTGGAGG+AGG - chr3_1:90600128-90600147 Msa0386800:CDS 70.0%
GGTGACCGTCGTGGAGGAGG+TGG - chr3_1:90600131-90600150 Msa0386800:CDS 70.0%
GACCGTCGTGGAGGAGGTGG+TGG - chr3_1:90600134-90600153 Msa0386800:CDS 70.0%
GGTGGAGGAGGCGGGGGTTA+CGG - chr3_1:90600161-90600180 Msa0386800:CDS 70.0%
! GGGGGTTACGGAGGTGGTGG+TGG - chr3_1:90600173-90600192 Msa0386800:CDS 70.0%
!! GGTGGTGGCGGACGTCGTGA+TGG - chr3_1:90600188-90600207 Msa0386800:CDS 70.0%
!! GGTGGCGGACGTCGTGATGG+TGG - chr3_1:90600191-90600210 Msa0386800:CDS 70.0%
!! GGCGGACGTCGTGATGGTGG+TGG - chr3_1:90600194-90600213 Msa0386800:CDS 70.0%
!! TCGAGAGGCGGTGATGGCGG+TGG - chr3_1:90600260-90600279 Msa0386800:intron 70.0%
! AGTGGCGGAGGCGGTGGTGG+TGG - chr3_1:90600020-90600039 Msa0386800:intron 75.0%
GGAGGAGGCGGGGGTTACGG+AGG - chr3_1:90600164-90600183 Msa0386800:CDS 75.0%
GGAGGCGGGGGTTACGGAGG+TGG - chr3_1:90600167-90600186 Msa0386800:CDS 75.0%
GGCGGGGGTTACGGAGGTGG+TGG - chr3_1:90600170-90600189 Msa0386800:CDS 75.0%
! AGTGGCGGAGGCGGTGGTGG+TGG - chr3_1:90600020-90600039 Msa0386800:intron 75.0%
GGAGGAGGCGGGGGTTACGG+AGG - chr3_1:90600164-90600183 Msa0386800:CDS 75.0%
GGAGGCGGGGGTTACGGAGG+TGG - chr3_1:90600167-90600186 Msa0386800:CDS 75.0%
GGCGGGGGTTACGGAGGTGG+TGG - chr3_1:90600170-90600189 Msa0386800:CDS 75.0%
!! CGTGGCAGTGGCGGAGGCGG+TGG - chr3_1:90600014-90600033 Msa0386800:intron 80.0%
!! GGCAGTGGCGGAGGCGGTGG+TGG - chr3_1:90600017-90600036 Msa0386800:intron 80.0%
!! CGTGGCAGTGGCGGAGGCGG+TGG - chr3_1:90600014-90600033 Msa0386800:intron 80.0%
!! GGCAGTGGCGGAGGCGGTGG+TGG - chr3_1:90600017-90600036 Msa0386800:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 90599412 90600729 90599412 ID=Msa0386800;Name=Msa0386800
chr3_1 mRNA 90599412 90600729 90599412 ID=Msa0386800-mRNA-1;Parent=Msa0386800;Name=Msa0386800-mRNA-1;_AED=0.12;_eAED=0.12;_QI=76|1|1|1|0.5|0.33|3|419|142
chr3_1 exon 90599412 90599910 90599412 ID=Msa0386800-mRNA-1:exon:25091;Parent=Msa0386800-mRNA-1
chr3_1 exon 90600031 90600271 90600031 ID=Msa0386800-mRNA-1:exon:25090;Parent=Msa0386800-mRNA-1
chr3_1 exon 90600546 90600729 90600546 ID=Msa0386800-mRNA-1:exon:25089;Parent=Msa0386800-mRNA-1
chr3_1 five_prime_UTR 90600654 90600729 90600654 ID=Msa0386800-mRNA-1:five_prime_utr;Parent=Msa0386800-mRNA-1
chr3_1 CDS 90600546 90600653 90600546 ID=Msa0386800-mRNA-1:cds;Parent=Msa0386800-mRNA-1
chr3_1 CDS 90600031 90600271 90600031 ID=Msa0386800-mRNA-1:cds;Parent=Msa0386800-mRNA-1
chr3_1 CDS 90599831 90599910 90599831 ID=Msa0386800-mRNA-1:cds;Parent=Msa0386800-mRNA-1
chr3_1 three_prime_UTR 90599412 90599830 90599412 ID=Msa0386800-mRNA-1:three_prime_utr;Parent=Msa0386800-mRNA-1
Gene Sequence

>Msa0386800

ATGGCGGAAGTTGAATACCGATGCTTTGTTGGTGGACTTGCATGGGCCACTGACAACGAAGCTCTTGAGAAAGCGTTTTCTTCCTTTGGTGAAATCGTCGAATCGAAGGTTATCACCGATCGTGAAACTGGAAGATCAAGAGGATTTGGATTTGTCACATTCTCTACGGAGCAGGCGATGAAAGATGCGATTGAAGGGATGAACGGCCAAGATCTTGATGGACGTAACATCACTGTGAATGAGGCTCAGAGTCGTGGCAGTGGCGGAGGCGGTGGTGGTGGATACCGCGGAGGTGGTGGTGGATATGGCGGAGGTGGTGAACGTCGTGGAGGTGGTGGATATGGTGGAGGTGGCTACGGAGATGGTGGCTCCAGATACTCGAGAGGCGGTGATGGCGGTGGCTCTGACAGTAGAAACTGGAGGGAATAA
Protein sequence

>Msa0386800

MAEVEYRCFVGGLAWATDNEALEKAFSSFGEIVESKVITDRETGRSRGFGFVTFSTEQAMKDAIEGMNGQDLDGRNITVNEAQSRGSGGGGGGGYRGGGGGYGGGGERRGGGGYGGGGYGDGGSRYSRGGDGGGSDSRNWRE*