Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461790 | XP_013460002.1 | 84.777 | 381 | 29 | 3 | 1 | 352 | 1 | 381 | 0.0 | 634 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461790 | sp|Q9FGK4|B561J_ARATH | 39.548 | 354 | 180 | 8 | 26 | 348 | 27 | 377 | 2.10e-76 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461790 | A0A072UY52 | 84.777 | 381 | 29 | 3 | 1 | 352 | 1 | 381 | 0.0 | 634 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026450 | Msa0461790 | 0.803441 | 3.480799e-49 | -8.615850e-47 |
| Msa0075470 | Msa0461790 | 0.810175 | 1.313775e-50 | -8.615850e-47 |
| Msa0140500 | Msa0461790 | -0.801849 | 7.415418e-49 | -8.615850e-47 |
| Msa0145260 | Msa0461790 | 0.816288 | 5.975500e-52 | -8.615850e-47 |
| Msa0160960 | Msa0461790 | 0.810111 | 1.356126e-50 | -8.615850e-47 |
| Msa0165520 | Msa0461790 | 0.815374 | 9.552208e-52 | -8.615850e-47 |
| Msa0229590 | Msa0461790 | 0.804263 | 2.349737e-49 | -8.615850e-47 |
| Msa0236510 | Msa0461790 | -0.802094 | 6.603295e-49 | -8.615850e-47 |
| Msa0381610 | Msa0461790 | -0.807770 | 4.298019e-50 | -8.615850e-47 |
| Msa0384890 | Msa0461790 | 0.832638 | 8.432001e-56 | -8.615850e-47 |
| Msa0389390 | Msa0461790 | 0.801791 | 7.622438e-49 | -8.615850e-47 |
| Msa0410860 | Msa0461790 | 0.905238 | 5.298742e-80 | -8.615850e-47 |
| Msa0461790 | Msa0479340 | 0.813895 | 2.030613e-51 | -8.615850e-47 |
| Msa0461790 | Msa0503430 | 0.849173 | 3.832202e-60 | -8.615850e-47 |
| Msa0461790 | Msa0574730 | 0.817943 | 2.537321e-52 | -8.615850e-47 |
| Msa0461790 | Msa0603370 | 0.803983 | 2.686737e-49 | -8.615850e-47 |
| Msa0461790 | Msa0613110 | 0.805929 | 1.052796e-49 | -8.615850e-47 |
| Msa0461790 | Msa0613120 | 0.806324 | 8.693565e-50 | -8.615850e-47 |
| Msa0461790 | Msa0622170 | -0.805850 | 1.094016e-49 | -8.615850e-47 |
| Msa0461790 | Msa0624960 | 0.811604 | 6.441376e-51 | -8.615850e-47 |
| Msa0461790 | Msa0653660 | 0.807209 | 5.651555e-50 | -8.615850e-47 |
| Msa0461790 | Msa0711150 | 0.800004 | 1.766314e-48 | -8.615850e-47 |
| Msa0461790 | Msa0729800 | 0.804682 | 1.921612e-49 | -8.615850e-47 |
| Msa0461790 | Msa0731940 | 0.802817 | 4.686536e-49 | -8.615850e-47 |
| Msa0461790 | Msa0755180 | 0.803956 | 2.721410e-49 | -8.615850e-47 |
| Msa0461790 | Msa0817460 | 0.803011 | 4.271970e-49 | -8.615850e-47 |
| Msa0461790 | Msa0830230 | 0.801460 | 8.912658e-49 | -8.615850e-47 |
| Msa0461790 | Msa0844490 | 0.809535 | 1.803917e-50 | -8.615850e-47 |
| Msa0461790 | Msa0848960 | 0.821582 | 3.739336e-53 | -8.615850e-47 |
| Msa0461790 | Msa0899450 | 0.809501 | 1.834492e-50 | -8.615850e-47 |
| Msa0461790 | Msa0914270 | 0.800368 | 1.489583e-48 | -8.615850e-47 |
| Msa0461790 | Msa0974080 | 0.816643 | 4.974851e-52 | -8.615850e-47 |
| Msa0461790 | Msa1023950 | 0.808980 | 2.371788e-50 | -8.615850e-47 |
| Msa0461790 | Msa1036610 | 0.802410 | 5.683970e-49 | -8.615850e-47 |
| Msa0461790 | Msa1050680 | 0.806129 | 9.557855e-50 | -8.615850e-47 |
| Msa0461790 | Msa1052330 | 0.805213 | 1.487637e-49 | -8.615850e-47 |
| Msa0461790 | Msa1068480 | 0.804764 | 1.846779e-49 | -8.615850e-47 |
| Msa0461790 | Msa1111870 | 0.805650 | 1.204817e-49 | -8.615850e-47 |
| Msa0461790 | Msa1120610 | 0.818571 | 1.829007e-52 | -8.615850e-47 |
| Msa0461790 | Msa1121480 | 0.802453 | 5.571036e-49 | -8.615850e-47 |
| Msa0461790 | Msa1177560 | 0.801857 | 7.386217e-49 | -8.615850e-47 |
| Msa0461790 | Msa1185110 | 0.809664 | 1.691973e-50 | -8.615850e-47 |
| Msa0461790 | Msa1208650 | -0.803062 | 4.170506e-49 | -8.615850e-47 |
| Msa0461790 | Msa1257800 | -0.804905 | 1.725629e-49 | -8.615850e-47 |
| Msa0461790 | Msa1315420 | 0.802166 | 6.381394e-49 | -8.615850e-47 |
| Msa0461790 | Msa1348760 | 0.805511 | 1.288633e-49 | -8.615850e-47 |
| Msa0461790 | Msa1352280 | -0.817742 | 2.816067e-52 | -8.615850e-47 |
| Msa0461790 | Msa1372150 | 0.801111 | 1.050416e-48 | -8.615850e-47 |
| Msa0461790 | Msa1394310 | 0.804396 | 2.204161e-49 | -8.615850e-47 |
| Msa0461790 | Msa1449340 | -0.804134 | 2.499423e-49 | -8.615850e-47 |
| Msa0290870 | Msa0461790 | 0.803359 | 3.620442e-49 | -8.615850e-47 |
| Msa0291280 | Msa0461790 | 0.807161 | 5.787614e-50 | -8.615850e-47 |
| Msa0293910 | Msa0461790 | 0.800738 | 1.251758e-48 | -8.615850e-47 |
| Msa0305190 | Msa0461790 | 0.800653 | 1.302932e-48 | -8.615850e-47 |
| Msa0342750 | Msa0461790 | 0.802606 | 5.181098e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461790 | MtrunA17_Chr3g0101961 | 84.777 | 381 | 29 | 3 | 1 | 352 | 1 | 381 | 0.0 | 634 |
| Msa0461790 | MtrunA17_Chr4g0076051 | 37.958 | 382 | 195 | 10 | 6 | 348 | 3 | 381 | 7.77e-69 | 221 |
| Msa0461790 | MtrunA17_Chr7g0234191 | 35.054 | 368 | 202 | 9 | 1 | 338 | 54 | 414 | 1.82e-62 | 206 |
| Msa0461790 | MtrunA17_Chr2g0290131 | 37.883 | 359 | 184 | 10 | 26 | 348 | 29 | 384 | 2.73e-62 | 204 |
| Msa0461790 | MtrunA17_Chr2g0278181 | 38.908 | 293 | 147 | 6 | 85 | 347 | 1 | 291 | 3.72e-52 | 175 |
| Msa0461790 | MtrunA17_Chr7g0261921 | 69.027 | 113 | 24 | 1 | 85 | 186 | 1 | 113 | 2.85e-49 | 162 |
| Msa0461790 | MtrunA17_Chr5g0447771 | 26.975 | 367 | 219 | 10 | 26 | 349 | 60 | 420 | 1.01e-37 | 140 |
| Msa0461790 | MtrunA17_Chr5g0444651 | 28.272 | 382 | 231 | 11 | 2 | 342 | 10 | 389 | 2.67e-36 | 135 |
| Msa0461790 | MtrunA17_Chr8g0347591 | 28.136 | 295 | 179 | 8 | 69 | 338 | 91 | 377 | 1.09e-24 | 103 |
| Msa0461790 | MtrunA17_Chr8g0338731 | 30.732 | 205 | 120 | 7 | 1 | 185 | 1 | 203 | 1.88e-21 | 91.7 |
| Msa0461790 | MtrunA17_Chr7g0275621 | 25.623 | 281 | 177 | 7 | 85 | 339 | 104 | 378 | 4.96e-18 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0461790 | AT5G47530.1 | 39.548 | 354 | 180 | 8 | 26 | 348 | 27 | 377 | 2.14e-77 | 243 |
| Msa0461790 | AT3G59070.1 | 36.317 | 391 | 206 | 10 | 1 | 350 | 3 | 391 | 3.68e-75 | 239 |
| Msa0461790 | AT4G17280.1 | 37.701 | 374 | 194 | 8 | 7 | 346 | 15 | 383 | 1.29e-74 | 236 |
| Msa0461790 | AT5G35735.1 | 39.718 | 355 | 173 | 11 | 26 | 348 | 29 | 374 | 1.52e-74 | 236 |
| Msa0461790 | AT3G25290.1 | 35.657 | 373 | 198 | 11 | 17 | 350 | 19 | 388 | 3.38e-63 | 206 |
| Msa0461790 | AT3G25290.2 | 35.657 | 373 | 198 | 11 | 17 | 350 | 19 | 388 | 3.38e-63 | 206 |
| Msa0461790 | AT4G12980.1 | 35.933 | 359 | 188 | 9 | 30 | 349 | 33 | 388 | 1.20e-61 | 202 |
| Msa0461790 | AT5G48750.1 | 35.865 | 237 | 123 | 5 | 7 | 215 | 15 | 250 | 1.79e-43 | 151 |
| Msa0461790 | AT2G04850.1 | 27.933 | 358 | 213 | 9 | 36 | 350 | 33 | 388 | 1.60e-41 | 150 |
| Msa0461790 | AT3G07570.1 | 28.488 | 344 | 194 | 13 | 21 | 335 | 43 | 363 | 3.96e-25 | 104 |
| Msa0461790 | AT3G61750.1 | 25.360 | 347 | 201 | 14 | 19 | 335 | 52 | 370 | 2.45e-17 | 82.8 |
| Msa0461790 | AT3G61750.2 | 25.839 | 298 | 173 | 13 | 71 | 335 | 11 | 293 | 2.69e-16 | 79.0 |
| Msa0461790 | AT3G07390.1 | 31.707 | 164 | 95 | 5 | 26 | 173 | 50 | 212 | 7.47e-16 | 77.0 |
| Msa0461790 | AT3G07390.2 | 34.737 | 95 | 58 | 2 | 26 | 116 | 50 | 144 | 8.05e-11 | 60.5 |
Find 76 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATTCGAATTAGGGTTTA+TGG | 0.103172 | 3_3:-60322554 | None:intergenic |
| CTTGCATATTGAAGATTATT+TGG | 0.126339 | 3_3:-60322412 | None:intergenic |
| CCTATCATGCCATTCGAATT+AGG | 0.133334 | 3_3:-60322562 | None:intergenic |
| ATTATCTATGCTTGTGTAAT+TGG | 0.156616 | 3_3:+60326819 | Msa0461790:CDS |
| GGAGAAAATGTTCAAAGTTT+TGG | 0.201378 | 3_3:+60322841 | Msa0461790:CDS |
| CTATACTTGTGATCTTTCTT+TGG | 0.217638 | 3_3:-60326687 | None:intergenic |
| CTTCCGGTTTATGATATTTC+GGG | 0.219832 | 3_3:+60322688 | Msa0461790:CDS |
| TGGGGAACATTAATGCTAAT+TGG | 0.271890 | 3_3:+60326435 | Msa0461790:CDS |
| TCTTCCGGTTTATGATATTT+CGG | 0.274364 | 3_3:+60322687 | Msa0461790:CDS |
| CTATCATGCCATTCGAATTA+GGG | 0.275913 | 3_3:-60322561 | None:intergenic |
| GTGAGAAGCAAAAGAAGTTT+TGG | 0.277230 | 3_3:-60322331 | None:intergenic |
| CTTCAAAGGCTTTGACATCT+TGG | 0.282677 | 3_3:+60326776 | Msa0461790:CDS |
| TTCAAAGGCTTTGACATCTT+GGG | 0.291829 | 3_3:+60326777 | Msa0461790:CDS |
| AGTAAAGAACTTGGAGTATA+GGG | 0.304729 | 3_3:+60326909 | Msa0461790:CDS |
| CCTAATTCGAATGGCATGAT+AGG | 0.312177 | 3_3:+60322562 | Msa0461790:CDS |
| TGTGGTGTGTTGTGAATTCC+TGG | 0.319593 | 3_3:-60326597 | None:intergenic |
| GAGTAAAGAACTTGGAGTAT+AGG | 0.321962 | 3_3:+60326908 | Msa0461790:CDS |
| TACCCTCTTGTAACATAGTT+TGG | 0.326972 | 3_3:-60322657 | None:intergenic |
| ATCGGTTATCAAAACTTTGA+TGG | 0.331104 | 3_3:+60322598 | Msa0461790:CDS |
| CAACCATTATCTTAGCTATA+TGG | 0.338799 | 3_3:+60326748 | Msa0461790:CDS |
| AATGCTAATTGGAGTAATAA+TGG | 0.352110 | 3_3:+60326446 | Msa0461790:CDS |
| TGCTTGTGTAATTGGATGTC+TGG | 0.362662 | 3_3:+60326827 | Msa0461790:CDS |
| CAATGTATAGCATTATTATT+CGG | 0.371844 | 3_3:+60326534 | Msa0461790:CDS |
| AGAGGGTAACATTAGTCTTC+CGG | 0.375780 | 3_3:+60322672 | Msa0461790:CDS |
| AGGATTCTAGTTGGATTGCT+TGG | 0.376715 | 3_3:+60322530 | Msa0461790:intron |
| AACATCTTTCATTTCTTAGT+TGG | 0.385981 | 3_3:+60326720 | Msa0461790:CDS |
| AAGATCACAAGTATAGAATA+TGG | 0.394642 | 3_3:+60326694 | Msa0461790:CDS |
| TGCATGGTATTGAGGTTGTA+AGG | 0.405558 | 3_3:-60322375 | None:intergenic |
| GGATTCTAGTTGGATTGCTT+GGG | 0.433982 | 3_3:+60322531 | Msa0461790:intron |
| TTAATGTAAAGGATTCTAGT+TGG | 0.435523 | 3_3:+60322521 | Msa0461790:intron |
| AAGAGATTTGAAGGACCAAC+AGG | 0.436784 | 3_3:+60326480 | Msa0461790:CDS |
| TTTGCCACCGGTTTATATAT+GGG | 0.438090 | 3_3:+60326567 | Msa0461790:CDS |
| GTTCCATATAGCTAAGATAA+TGG | 0.440844 | 3_3:-60326751 | None:intergenic |
| ATAAAGAGAGGAATCTAAAA+CGG | 0.445598 | 3_3:-60322449 | None:intergenic |
| TTGCTTGGATTATGTGGCTA+TGG | 0.448234 | 3_3:+60326877 | Msa0461790:CDS |
| CGCCACTTGAAGAGATTTGA+AGG | 0.462933 | 3_3:+60326471 | Msa0461790:CDS |
| ATTGAGATCTCATGCTTTGA+CGG | 0.466010 | 3_3:+60322819 | Msa0461790:CDS |
| TCATGCATGGCAAGAAGGAT+TGG | 0.469395 | 3_3:+60322780 | Msa0461790:CDS |
| GCATTATTATTCGGCACTGC+TGG | 0.475145 | 3_3:+60326543 | Msa0461790:CDS |
| GAAGGATTGGTTTCTAGTGA+TGG | 0.477780 | 3_3:+60322793 | Msa0461790:CDS |
| TGGAATCACTCTAATGACTT+TGG | 0.479693 | 3_3:+60326629 | Msa0461790:CDS |
| TGAGCTTAGAAGTTGTTGCT+TGG | 0.480776 | 3_3:+60326862 | Msa0461790:CDS |
| TCAAAGGCTTTGACATCTTG+GGG | 0.482252 | 3_3:+60326778 | Msa0461790:CDS |
| TTGGTTTCCCATATATAAAC+CGG | 0.487033 | 3_3:-60326574 | None:intergenic |
| ATAGGATCACAAGCTCTAAT+CGG | 0.487311 | 3_3:+60322580 | Msa0461790:CDS |
| ATTGTCTCTCATAGTATTGG+TGG | 0.498473 | 3_3:+60322889 | Msa0461790:CDS |
| TTGAGATCTCATGCTTTGAC+GGG | 0.498492 | 3_3:+60322820 | Msa0461790:CDS |
| TAAAGAGAGGAATCTAAAAC+GGG | 0.500061 | 3_3:-60322448 | None:intergenic |
| AAGTTGTTGCTTGGATTATG+TGG | 0.503907 | 3_3:+60326871 | Msa0461790:CDS |
| GGTTGATGAAAGATGTGAAA+AGG | 0.504623 | 3_3:-60322354 | None:intergenic |
| GTTGATGAAAGATGTGAAAA+GGG | 0.508744 | 3_3:-60322353 | None:intergenic |
| GTATGAGTTGCATGGTATTG+AGG | 0.523456 | 3_3:-60322383 | None:intergenic |
| AATATTGTCTCTCATAGTAT+TGG | 0.526250 | 3_3:+60322886 | Msa0461790:CDS |
| GTTCCCGAAATATCATAAAC+CGG | 0.529224 | 3_3:-60322691 | None:intergenic |
| GTTAATCATGCATGGCAAGA+AGG | 0.530329 | 3_3:+60322775 | Msa0461790:CDS |
| AACACACCACATAGATGCGT+TGG | 0.546301 | 3_3:+60326609 | Msa0461790:CDS |
| GTGTGTTGTGAATTCCTGGT+TGG | 0.550062 | 3_3:-60326593 | None:intergenic |
| GTCCTTCAAATCTCTTCAAG+TGG | 0.554301 | 3_3:-60326473 | None:intergenic |
| AACAAGAAGAGTAAAGAACT+TGG | 0.557520 | 3_3:+60326900 | Msa0461790:CDS |
| TCAGTTTGGTTAATCATGCA+TGG | 0.562684 | 3_3:+60322767 | Msa0461790:CDS |
| GCTATATGGAACGTCTTCAA+AGG | 0.568443 | 3_3:+60326762 | Msa0461790:CDS |
| AAAGGCTTTGACATCTTGGG+GGG | 0.588838 | 3_3:+60326780 | Msa0461790:CDS |
| CAAAGGCTTTGACATCTTGG+GGG | 0.589311 | 3_3:+60326779 | Msa0461790:CDS |
| TTACCAAACTATGTTACAAG+AGG | 0.591668 | 3_3:+60322654 | Msa0461790:CDS |
| GCCATAAACCCTAATTCGAA+TGG | 0.593827 | 3_3:+60322553 | Msa0461790:CDS |
| GTTATAGTTCCAATAAAGAG+AGG | 0.595183 | 3_3:-60322461 | None:intergenic |
| TGAAACCATGTTGATCCTGT+TGG | 0.599661 | 3_3:-60326495 | None:intergenic |
| TTATATATGGGAAACCAACC+AGG | 0.605661 | 3_3:+60326579 | Msa0461790:CDS |
| ATATTGAAGATTATTTGGAA+AGG | 0.617584 | 3_3:-60322407 | None:intergenic |
| GAGAGGAATCTAAAACGGGT+AGG | 0.618205 | 3_3:-60322444 | None:intergenic |
| GTGATTCCAACGCATCTATG+TGG | 0.638600 | 3_3:-60326615 | None:intergenic |
| TACCAAACTATGTTACAAGA+GGG | 0.645077 | 3_3:+60322655 | Msa0461790:CDS |
| ATCACAAGTATAGAATATGG+TGG | 0.645971 | 3_3:+60326697 | Msa0461790:CDS |
| GTTTCCCATATATAAACCGG+TGG | 0.648159 | 3_3:-60326571 | None:intergenic |
| GGAAAGGTGTATGAGTTGCA+TGG | 0.649424 | 3_3:-60322391 | None:intergenic |
| AAGGACCAACAGGATCAACA+TGG | 0.677930 | 3_3:+60326490 | Msa0461790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATTTGAATTTGTTT+TGG | + | chr3_3:60323387-60323406 | Msa0461790:intron | 10.0% |
| !!! | TTTATATTTGAATTTGTTTT+GGG | + | chr3_3:60323388-60323407 | Msa0461790:intron | 10.0% |
| !!! | ATTTATTTTTTGAATTAAGA+TGG | - | chr3_3:60324764-60324783 | None:intergenic | 10.0% |
| !! | AAAAAATAAATAAATTTCTC+AGG | + | chr3_3:60324773-60324792 | Msa0461790:intron | 10.0% |
| !!! | TTATTTATTTGATTTGATTT+TGG | - | chr3_3:60324873-60324892 | None:intergenic | 10.0% |
| !!! | ATTTTTTAATGTTATAAGTT+GGG | + | chr3_3:60326416-60326435 | Msa0461790:intron | 10.0% |
| !! | ATTCAAGAAAATTAATGTAA+AGG | + | chr3_3:60322510-60322529 | Msa0461790:intron | 15.0% |
| !! | ATTAAAAAAAAAACTCATCT+AGG | - | chr3_3:60323215-60323234 | None:intergenic | 15.0% |
| !!! | TAGATGAGTTTTTTTTTTAA+TGG | + | chr3_3:60323214-60323233 | Msa0461790:intron | 15.0% |
| !!! | AGTTTTTTTTTTAATGGTTT+TGG | + | chr3_3:60323220-60323239 | Msa0461790:intron | 15.0% |
| !! | TAATTTCATACAAATAAGTT+TGG | + | chr3_3:60323336-60323355 | Msa0461790:intron | 15.0% |
| !! | TTTAACAATATAATGATAGT+TGG | + | chr3_3:60323945-60323964 | Msa0461790:intron | 15.0% |
| !!! | TTACATGTTTTTTTAAAAGA+AGG | - | chr3_3:60324269-60324288 | None:intergenic | 15.0% |
| !!! | GAATTTTTTTTAACAAATGA+CGG | - | chr3_3:60324301-60324320 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAAGTAGATAG+AGG | + | chr3_3:60324547-60324566 | Msa0461790:intron | 15.0% |
| !! | AAAAAAAAAAAGTAGATAGA+GGG | + | chr3_3:60324548-60324567 | Msa0461790:intron | 15.0% |
| !! | TATTAAATTCTATTAACTGT+TGG | + | chr3_3:60325536-60325555 | Msa0461790:intron | 15.0% |
| !!! | TACAACAATTATTTTCATAA+TGG | + | chr3_3:60325830-60325849 | Msa0461790:intron | 15.0% |
| !! | AAAAATATATTAGAGAAACA+TGG | + | chr3_3:60325949-60325968 | Msa0461790:intron | 15.0% |
| !!! | CTTTTTTTTCTATTCTTTTA+CGG | - | chr3_3:60326039-60326058 | None:intergenic | 15.0% |
| !! | TTATCTATACCTATTAATAA+AGG | - | chr3_3:60326163-60326182 | None:intergenic | 15.0% |
| !!! | CATTTTTTAATGTTATAAGT+TGG | + | chr3_3:60326415-60326434 | Msa0461790:intron | 15.0% |
| !!! | TTTTTTAATGTTATAAGTTG+GGG | + | chr3_3:60326417-60326436 | Msa0461790:intron | 15.0% |
| !! | ATATTGAAGATTATTTGGAA+AGG | - | chr3_3:60322410-60322429 | None:intergenic | 20.0% |
| !!! | ACAGTTTGTTTTTTTTACAA+TGG | + | chr3_3:60323247-60323266 | Msa0461790:intron | 20.0% |
| !! | ATAAAAAAAAAATCCAGAGA+TGG | - | chr3_3:60323508-60323527 | None:intergenic | 20.0% |
| !! | ATATTCAATCTTATTCTTCA+TGG | - | chr3_3:60323883-60323902 | None:intergenic | 20.0% |
| !! | TAAATTGTATTGAATCTTAC+CGG | + | chr3_3:60324622-60324641 | Msa0461790:intron | 20.0% |
| !! | AAATATATACATGAACCATA+AGG | + | chr3_3:60324728-60324747 | Msa0461790:intron | 20.0% |
| !!! | TATTTTTTGAATTAAGATGG+TGG | - | chr3_3:60324761-60324780 | None:intergenic | 20.0% |
| !! | TGAATTATCTACACAAAATT+TGG | + | chr3_3:60325320-60325339 | Msa0461790:intron | 20.0% |
| !! | GCAAAAATGGTATATAAAAT+AGG | + | chr3_3:60326116-60326135 | Msa0461790:intron | 20.0% |
| !!! | AATGTTTTGCCTTTATTAAT+AGG | + | chr3_3:60326151-60326170 | Msa0461790:intron | 20.0% |
| !! | TAAAAAATGTTAGAGCAAAA+TGG | - | chr3_3:60326303-60326322 | None:intergenic | 20.0% |
| !! | CAATGTATAGCATTATTATT+CGG | + | chr3_3:60326534-60326553 | Msa0461790:CDS | 20.0% |
| ! | CTTGCATATTGAAGATTATT+TGG | - | chr3_3:60322415-60322434 | None:intergenic | 25.0% |
| ! | ATAAAGAGAGGAATCTAAAA+CGG | - | chr3_3:60322452-60322471 | None:intergenic | 25.0% |
| !! | TTTTAGATTCCTCTCTTTAT+TGG | + | chr3_3:60322452-60322471 | Msa0461790:CDS | 25.0% |
| ! | TTAATGTAAAGGATTCTAGT+TGG | + | chr3_3:60322521-60322540 | Msa0461790:intron | 25.0% |
| !! | TTAACCAAACTGACATTTTT+AGG | - | chr3_3:60322760-60322779 | None:intergenic | 25.0% |
| ! | AATATTGTCTCTCATAGTAT+TGG | + | chr3_3:60322886-60322905 | Msa0461790:CDS | 25.0% |
| !! | AGAAGTTACTTACGATTTTT+AGG | - | chr3_3:60322936-60322955 | None:intergenic | 25.0% |
| ! | ATCGTAAGTAACTTCTTATT+TGG | + | chr3_3:60322940-60322959 | Msa0461790:intron | 25.0% |
| ! | ACAATGCATAAAAATATGCA+AGG | + | chr3_3:60323045-60323064 | Msa0461790:intron | 25.0% |
| !!! | CATTGGTTTTTTTTTTGTAG+TGG | - | chr3_3:60323090-60323109 | None:intergenic | 25.0% |
| ! | AAAAAACCAATGCGTTAAAT+TGG | + | chr3_3:60323098-60323117 | Msa0461790:intron | 25.0% |
| ! | TCATACAAATAAGTTTGGAA+CGG | + | chr3_3:60323341-60323360 | Msa0461790:intron | 25.0% |
| !!! | AATATCGATTTCATGCTTTT+AGG | + | chr3_3:60323479-60323498 | Msa0461790:intron | 25.0% |
| !!! | AATTTTGTTGTCTTTCTACA+TGG | - | chr3_3:60323718-60323737 | None:intergenic | 25.0% |
| ! | CTATATTCCTTTATATGTCA+AGG | + | chr3_3:60324069-60324088 | Msa0461790:intron | 25.0% |
| ! | TTAATCACCTTGACATATAA+AGG | - | chr3_3:60324079-60324098 | None:intergenic | 25.0% |
| ! | TAATATATTTGCCCTATAGA+TGG | + | chr3_3:60324132-60324151 | Msa0461790:intron | 25.0% |
| !! | TTACACTAACCATTGATTAT+TGG | + | chr3_3:60324591-60324610 | Msa0461790:intron | 25.0% |
| ! | ACTTATGTTCCAATAATCAA+TGG | - | chr3_3:60324603-60324622 | None:intergenic | 25.0% |
| !! | GAGTTTCTTATTTCTTACTT+TGG | + | chr3_3:60325160-60325179 | Msa0461790:intron | 25.0% |
| ! | ATCTTCTTTGATATGATGTT+GGG | + | chr3_3:60325192-60325211 | Msa0461790:intron | 25.0% |
| !!! | TTTCTTTTTTCCTTTTTCAG+TGG | - | chr3_3:60325277-60325296 | None:intergenic | 25.0% |
| ! | TAGATTGATGTAGAAGAATA+AGG | + | chr3_3:60325396-60325415 | Msa0461790:intron | 25.0% |
| ! | GAACACAAACAAAATGAAAA+TGG | + | chr3_3:60325564-60325583 | Msa0461790:intron | 25.0% |
| ! | TGATGCATATATAAGAAAGA+GGG | - | chr3_3:60325727-60325746 | None:intergenic | 25.0% |
| !! | GTTTCATGATCTGATTTTTA+TGG | + | chr3_3:60325788-60325807 | Msa0461790:intron | 25.0% |
| ! | AATGGTTGAGCAATATTAAA+AGG | + | chr3_3:60325848-60325867 | Msa0461790:intron | 25.0% |
| !!! | TAATCAAATTCTAGTTTGAG+TGG | + | chr3_3:60325891-60325910 | Msa0461790:intron | 25.0% |
| ! | TATATTAGAGAAACATGGAA+AGG | + | chr3_3:60325954-60325973 | Msa0461790:intron | 25.0% |
| !! | TTTTTCCTTAACTGCATTAA+AGG | - | chr3_3:60326015-60326034 | None:intergenic | 25.0% |
| ! | AAGTAATTGAATAGACTGAA+GGG | + | chr3_3:60326094-60326113 | Msa0461790:intron | 25.0% |
| !! | ATAAAGGCAAAACATTGTTT+TGG | - | chr3_3:60326147-60326166 | None:intergenic | 25.0% |
| ! | AATGCTAATTGGAGTAATAA+TGG | + | chr3_3:60326446-60326465 | Msa0461790:CDS | 25.0% |
| ! | AAGATCACAAGTATAGAATA+TGG | + | chr3_3:60326694-60326713 | Msa0461790:CDS | 25.0% |
| ! | AACATCTTTCATTTCTTAGT+TGG | + | chr3_3:60326720-60326739 | Msa0461790:CDS | 25.0% |
| ! | ATTATCTATGCTTGTGTAAT+TGG | + | chr3_3:60326819-60326838 | Msa0461790:CDS | 25.0% |
| ! | GTTGATGAAAGATGTGAAAA+GGG | - | chr3_3:60322356-60322375 | None:intergenic | 30.0% |
| ! | TAAAGAGAGGAATCTAAAAC+GGG | - | chr3_3:60322451-60322470 | None:intergenic | 30.0% |
| GTTATAGTTCCAATAAAGAG+AGG | - | chr3_3:60322464-60322483 | None:intergenic | 30.0% | |
| ATCGGTTATCAAAACTTTGA+TGG | + | chr3_3:60322598-60322617 | Msa0461790:CDS | 30.0% | |
| TTACCAAACTATGTTACAAG+AGG | + | chr3_3:60322654-60322673 | Msa0461790:CDS | 30.0% | |
| TACCAAACTATGTTACAAGA+GGG | + | chr3_3:60322655-60322674 | Msa0461790:CDS | 30.0% | |
| TCTTCCGGTTTATGATATTT+CGG | + | chr3_3:60322687-60322706 | Msa0461790:CDS | 30.0% | |
| ACTTCCTAAAAATGTCAGTT+TGG | + | chr3_3:60322753-60322772 | Msa0461790:CDS | 30.0% | |
| ! | GGAGAAAATGTTCAAAGTTT+TGG | + | chr3_3:60322841-60322860 | Msa0461790:CDS | 30.0% |
| !!! | TGTTCAAAGTTTTGGAACTT+TGG | + | chr3_3:60322849-60322868 | Msa0461790:CDS | 30.0% |
| CTCATCTAGGAAAATCAATT+TGG | - | chr3_3:60323202-60323221 | None:intergenic | 30.0% | |
| !! | AAATAAGTTTGGAACGGTTT+TGG | + | chr3_3:60323347-60323366 | Msa0461790:intron | 30.0% |
| GTAGAAAGACAACAAAATTG+AGG | + | chr3_3:60323719-60323738 | Msa0461790:intron | 30.0% | |
| ! | TTGATGTTTGCACGATTTTT+CGG | - | chr3_3:60323795-60323814 | None:intergenic | 30.0% |
| !!! | TGCTTTTTTCAAGAATGTGA+TGG | - | chr3_3:60323851-60323870 | None:intergenic | 30.0% |
| GAATGAGTGTTAGAAAAATG+AGG | - | chr3_3:60323974-60323993 | None:intergenic | 30.0% | |
| GAATCGTATGATACTATGAT+AGG | - | chr3_3:60324048-60324067 | None:intergenic | 30.0% | |
| GAAAATATTCGAAGAAGAGA+AGG | + | chr3_3:60324186-60324205 | Msa0461790:intron | 30.0% | |
| TGCAAAAAGAATGTTGAAGA+CGG | - | chr3_3:60324481-60324500 | None:intergenic | 30.0% | |
| TGACTGAAGAAGAAAAATGA+AGG | + | chr3_3:60324689-60324708 | Msa0461790:intron | 30.0% | |
| GAAAAATGAAGGAATGCAAT+AGG | + | chr3_3:60324700-60324719 | Msa0461790:intron | 30.0% | |
| CATCTTCTTTGATATGATGT+TGG | + | chr3_3:60325191-60325210 | Msa0461790:intron | 30.0% | |
| TCTGTTTATGGTAAATAGGA+GGG | - | chr3_3:60325253-60325272 | None:intergenic | 30.0% | |
| TAGAGATAAAGTGAAAGGAT+AGG | + | chr3_3:60325364-60325383 | Msa0461790:intron | 30.0% | |
| TAGAAGAATAAGGAAGAAAG+TGG | + | chr3_3:60325406-60325425 | Msa0461790:intron | 30.0% | |
| AAGAAAAGGAAGGAAACAAA+AGG | - | chr3_3:60325497-60325516 | None:intergenic | 30.0% | |
| ! | TTTGTTTCCTTCCTTTTCTT+TGG | + | chr3_3:60325497-60325516 | Msa0461790:intron | 30.0% |
| GGTTAAAAGTAAATTGCAAC+AGG | + | chr3_3:60325585-60325604 | Msa0461790:intron | 30.0% | |
| !! | CAAAAATTTGTTGCTACACT+AGG | - | chr3_3:60325678-60325697 | None:intergenic | 30.0% |
| GATGCATATATAAGAAAGAG+GGG | - | chr3_3:60325726-60325745 | None:intergenic | 30.0% | |
| CTGATGCATATATAAGAAAG+AGG | - | chr3_3:60325728-60325747 | None:intergenic | 30.0% | |
| !!! | AGTGGTTGGTAAGATATTTT+TGG | + | chr3_3:60325909-60325928 | Msa0461790:intron | 30.0% |
| !! | TTTTGCCCTAAAGTTAGTTT+TGG | + | chr3_3:60326063-60326082 | Msa0461790:intron | 30.0% |
| CATGTCCAAAACTAACTTTA+GGG | - | chr3_3:60326071-60326090 | None:intergenic | 30.0% | |
| TCATGTCCAAAACTAACTTT+AGG | - | chr3_3:60326072-60326091 | None:intergenic | 30.0% | |
| CAAGTAATTGAATAGACTGA+AGG | + | chr3_3:60326093-60326112 | Msa0461790:intron | 30.0% | |
| !!! | CTGTAAGAGCAAATCTTTTT+TGG | - | chr3_3:60326210-60326229 | None:intergenic | 30.0% |
| TTGGTTTCCCATATATAAAC+CGG | - | chr3_3:60326577-60326596 | None:intergenic | 30.0% | |
| !!! | TTTGTGTTGCCATTTTTCTT+AGG | + | chr3_3:60326664-60326683 | Msa0461790:CDS | 30.0% |
| TTTCTTTGGCCTAAGAAAAA+TGG | - | chr3_3:60326676-60326695 | None:intergenic | 30.0% | |
| CTATACTTGTGATCTTTCTT+TGG | - | chr3_3:60326690-60326709 | None:intergenic | 30.0% | |
| ATCACAAGTATAGAATATGG+TGG | + | chr3_3:60326697-60326716 | Msa0461790:CDS | 30.0% | |
| CAACCATTATCTTAGCTATA+TGG | + | chr3_3:60326748-60326767 | Msa0461790:CDS | 30.0% | |
| GTTCCATATAGCTAAGATAA+TGG | - | chr3_3:60326754-60326773 | None:intergenic | 30.0% | |
| !!! | ATTGGATGTCTGGTTTTAAT+TGG | + | chr3_3:60326837-60326856 | Msa0461790:CDS | 30.0% |
| AACAAGAAGAGTAAAGAACT+TGG | + | chr3_3:60326900-60326919 | Msa0461790:CDS | 30.0% | |
| ! | GTGAGAAGCAAAAGAAGTTT+TGG | - | chr3_3:60322334-60322353 | None:intergenic | 35.0% |
| !! | GGTTGATGAAAGATGTGAAA+AGG | - | chr3_3:60322357-60322376 | None:intergenic | 35.0% |
| !!! | CATCGACAATGCTAGTTTTT+AGG | - | chr3_3:60322486-60322505 | None:intergenic | 35.0% |
| CTATCATGCCATTCGAATTA+GGG | - | chr3_3:60322564-60322583 | None:intergenic | 35.0% | |
| ! | ATAGGATCACAAGCTCTAAT+CGG | + | chr3_3:60322580-60322599 | Msa0461790:CDS | 35.0% |
| TACCCTCTTGTAACATAGTT+TGG | - | chr3_3:60322660-60322679 | None:intergenic | 35.0% | |
| CTTCCGGTTTATGATATTTC+GGG | + | chr3_3:60322688-60322707 | Msa0461790:CDS | 35.0% | |
| GTTCCCGAAATATCATAAAC+CGG | - | chr3_3:60322694-60322713 | None:intergenic | 35.0% | |
| AAATCATCATGCTTCCATCT+AGG | - | chr3_3:60322720-60322739 | None:intergenic | 35.0% | |
| TCAGTTTGGTTAATCATGCA+TGG | + | chr3_3:60322767-60322786 | Msa0461790:CDS | 35.0% | |
| ATTGAGATCTCATGCTTTGA+CGG | + | chr3_3:60322819-60322838 | Msa0461790:CDS | 35.0% | |
| ! | GGAACTTTGGATTTTCAATC+TGG | + | chr3_3:60322862-60322881 | Msa0461790:CDS | 35.0% |
| ! | ATTGTCTCTCATAGTATTGG+TGG | + | chr3_3:60322889-60322908 | Msa0461790:CDS | 35.0% |
| GCATAAAAATATGCAAGGTC+CGG | + | chr3_3:60323050-60323069 | Msa0461790:intron | 35.0% | |
| CATAAAAATATGCAAGGTCC+GGG | + | chr3_3:60323051-60323070 | Msa0461790:intron | 35.0% | |
| ATAAAAATATGCAAGGTCCG+GGG | + | chr3_3:60323052-60323071 | Msa0461790:intron | 35.0% | |
| !!! | GGTTTTTTTTTTGTAGTGGC+CGG | - | chr3_3:60323086-60323105 | None:intergenic | 35.0% |
| CAACATCCAATTTAACGCAT+TGG | - | chr3_3:60323107-60323126 | None:intergenic | 35.0% | |
| GATTAGAGTGTATGAAGACT+TGG | - | chr3_3:60323824-60323843 | None:intergenic | 35.0% | |
| TGCGATGAAAATAGAGACAA+AGG | - | chr3_3:60324018-60324037 | None:intergenic | 35.0% | |
| ATATTCGAAGAAGAGAAGGA+AGG | + | chr3_3:60324190-60324209 | Msa0461790:intron | 35.0% | |
| ATATCATCCCATAGTTGCTA+AGG | - | chr3_3:60324233-60324252 | None:intergenic | 35.0% | |
| ATGATGCCAAATCATTCCAT+TGG | + | chr3_3:60324421-60324440 | Msa0461790:intron | 35.0% | |
| TTGACTCCAATGGAATGATT+TGG | - | chr3_3:60324430-60324449 | None:intergenic | 35.0% | |
| AAATCATTCCATTGGAGTCA+AGG | + | chr3_3:60324429-60324448 | Msa0461790:intron | 35.0% | |
| ATAAATCTCCTTGACTCCAA+TGG | - | chr3_3:60324440-60324459 | None:intergenic | 35.0% | |
| CCGTCTATCTACTTATCAAA+GGG | - | chr3_3:60324517-60324536 | None:intergenic | 35.0% | |
| CCCTTTGATAAGTAGATAGA+CGG | + | chr3_3:60324514-60324533 | Msa0461790:intron | 35.0% | |
| TCCGTCTATCTACTTATCAA+AGG | - | chr3_3:60324518-60324537 | None:intergenic | 35.0% | |
| GATAAGTAGATAGACGGAAT+TGG | + | chr3_3:60324520-60324539 | Msa0461790:intron | 35.0% | |
| ! | CTGCATTATCAAAAGCATAG+AGG | - | chr3_3:60324651-60324670 | None:intergenic | 35.0% |
| !!! | CTCTATGCTTTTGATAATGC+AGG | + | chr3_3:60324649-60324668 | Msa0461790:intron | 35.0% |
| ! | GATGGTGGTAATTAACCTTA+TGG | - | chr3_3:60324746-60324765 | None:intergenic | 35.0% |
| !!! | TTCTTCCCATAGTTTTAACG+CGG | + | chr3_3:60324935-60324954 | Msa0461790:intron | 35.0% |
| ! | TTTTGTGTTCCCACTACAAA+GGG | + | chr3_3:60325009-60325028 | Msa0461790:intron | 35.0% |
| GGATGAAGAATAGAAGACTA+AGG | - | chr3_3:60325069-60325088 | None:intergenic | 35.0% | |
| ATAACGGTGATATTATGCGA+GGG | - | chr3_3:60325222-60325241 | None:intergenic | 35.0% | |
| TCGCATAATATCACCGTTAT+CGG | + | chr3_3:60325222-60325241 | Msa0461790:intron | 35.0% | |
| CTCTGTTTATGGTAAATAGG+AGG | - | chr3_3:60325254-60325273 | None:intergenic | 35.0% | |
| ! | TGGCTCTGTTTATGGTAAAT+AGG | - | chr3_3:60325257-60325276 | None:intergenic | 35.0% |
| !! | TTTTTCAGTGGCTCTGTTTA+TGG | - | chr3_3:60325265-60325284 | None:intergenic | 35.0% |
| ATAAACAGAGCCACTGAAAA+AGG | + | chr3_3:60325264-60325283 | Msa0461790:intron | 35.0% | |
| CGAAGTAGAGATAAAGTGAA+AGG | + | chr3_3:60325359-60325378 | Msa0461790:intron | 35.0% | |
| TTGAAGTGAATATGCATGCA+TGG | + | chr3_3:60325432-60325451 | Msa0461790:intron | 35.0% | |
| ACAATGTGGACAAACATATC+AGG | - | chr3_3:60325473-60325492 | None:intergenic | 35.0% | |
| CACATTTCCAAAGAAAAGGA+AGG | - | chr3_3:60325507-60325526 | None:intergenic | 35.0% | |
| GCTTCACATTTCCAAAGAAA+AGG | - | chr3_3:60325511-60325530 | None:intergenic | 35.0% | |
| GGAAAGTGGAAGGTTAAATA+TGG | - | chr3_3:60325705-60325724 | None:intergenic | 35.0% | |
| ATATAAGAAAGAGGGGAAAG+TGG | - | chr3_3:60325719-60325738 | None:intergenic | 35.0% | |
| TATGGCATCAATTGCTATCT+TGG | + | chr3_3:60325806-60325825 | Msa0461790:intron | 35.0% | |
| !! | CAAATTCTAGTTTGAGTGGT+TGG | + | chr3_3:60325895-60325914 | Msa0461790:intron | 35.0% |
| AACCTCCTTTAATGCAGTTA+AGG | + | chr3_3:60326007-60326026 | Msa0461790:intron | 35.0% | |
| TTCCTTAACTGCATTAAAGG+AGG | - | chr3_3:60326012-60326031 | None:intergenic | 35.0% | |
| AATAGACTGAAGGGCAAAAA+TGG | + | chr3_3:60326103-60326122 | Msa0461790:intron | 35.0% | |
| ! | TGCATGTACCTTTAGAAAGA+CGG | - | chr3_3:60326397-60326416 | None:intergenic | 35.0% |
| TGGGGAACATTAATGCTAAT+TGG | + | chr3_3:60326435-60326454 | Msa0461790:CDS | 35.0% | |
| !!! | TTTTGCCACCGGTTTATATA+TGG | + | chr3_3:60326566-60326585 | Msa0461790:CDS | 35.0% |
| !! | TTTGCCACCGGTTTATATAT+GGG | + | chr3_3:60326567-60326586 | Msa0461790:CDS | 35.0% |
| TTATATATGGGAAACCAACC+AGG | + | chr3_3:60326579-60326598 | Msa0461790:CDS | 35.0% | |
| TGGAATCACTCTAATGACTT+TGG | + | chr3_3:60326629-60326648 | Msa0461790:CDS | 35.0% | |
| ! | TTCAAAGGCTTTGACATCTT+GGG | + | chr3_3:60326777-60326796 | Msa0461790:CDS | 35.0% |
| ! | AAGTTGTTGCTTGGATTATG+TGG | + | chr3_3:60326871-60326890 | Msa0461790:CDS | 35.0% |
| ! | TGCATGGTATTGAGGTTGTA+AGG | - | chr3_3:60322378-60322397 | None:intergenic | 40.0% |
| GTATGAGTTGCATGGTATTG+AGG | - | chr3_3:60322386-60322405 | None:intergenic | 40.0% | |
| ! | AGGATTCTAGTTGGATTGCT+TGG | + | chr3_3:60322530-60322549 | Msa0461790:intron | 40.0% |
| ! | GGATTCTAGTTGGATTGCTT+GGG | + | chr3_3:60322531-60322550 | Msa0461790:intron | 40.0% |
| GCCATAAACCCTAATTCGAA+TGG | + | chr3_3:60322553-60322572 | Msa0461790:CDS | 40.0% | |
| GCCATTCGAATTAGGGTTTA+TGG | - | chr3_3:60322557-60322576 | None:intergenic | 40.0% | |
| CCTATCATGCCATTCGAATT+AGG | - | chr3_3:60322565-60322584 | None:intergenic | 40.0% | |
| CCTAATTCGAATGGCATGAT+AGG | + | chr3_3:60322562-60322581 | Msa0461790:CDS | 40.0% | |
| !! | AGAGGGTAACATTAGTCTTC+CGG | + | chr3_3:60322672-60322691 | Msa0461790:CDS | 40.0% |
| GTTAATCATGCATGGCAAGA+AGG | + | chr3_3:60322775-60322794 | Msa0461790:CDS | 40.0% | |
| !! | GAAGGATTGGTTTCTAGTGA+TGG | + | chr3_3:60322793-60322812 | Msa0461790:CDS | 40.0% |
| TTGAGATCTCATGCTTTGAC+GGG | + | chr3_3:60322820-60322839 | Msa0461790:CDS | 40.0% | |
| !! | TGCTTTTAGGAAACCATCTC+TGG | + | chr3_3:60323492-60323511 | Msa0461790:intron | 40.0% |
| GATCACGTCTACCATCTATA+GGG | - | chr3_3:60324146-60324165 | None:intergenic | 40.0% | |
| TGATCACGTCTACCATCTAT+AGG | - | chr3_3:60324147-60324166 | None:intergenic | 40.0% | |
| TGCACTAACCTTAGCAACTA+TGG | + | chr3_3:60324222-60324241 | Msa0461790:intron | 40.0% | |
| GCACTAACCTTAGCAACTAT+GGG | + | chr3_3:60324223-60324242 | Msa0461790:intron | 40.0% | |
| AAAAGAATGTTGAAGACGGC+AGG | - | chr3_3:60324477-60324496 | None:intergenic | 40.0% | |
| AAGTAGATAGAGGGAAAGAG+TGG | + | chr3_3:60324557-60324576 | Msa0461790:intron | 40.0% | |
| ! | ATCAAAAGCATAGAGGTCTC+CGG | - | chr3_3:60324644-60324663 | None:intergenic | 40.0% |
| GATCTCCGCGTTAAAACTAT+GGG | - | chr3_3:60324943-60324962 | None:intergenic | 40.0% | |
| TGATCTCCGCGTTAAAACTA+TGG | - | chr3_3:60324944-60324963 | None:intergenic | 40.0% | |
| !! | AGTTTTAACGCGGAGATCAT+TGG | + | chr3_3:60324945-60324964 | Msa0461790:intron | 40.0% |
| ! | GTTTTGTGTTCCCACTACAA+AGG | + | chr3_3:60325008-60325027 | Msa0461790:intron | 40.0% |
| AGATAGTCACCCTTTGTAGT+GGG | - | chr3_3:60325021-60325040 | None:intergenic | 40.0% | |
| AAGATAGTCACCCTTTGTAG+TGG | - | chr3_3:60325022-60325041 | None:intergenic | 40.0% | |
| ACAAAGGGTGACTATCTTCT+AGG | + | chr3_3:60325024-60325043 | Msa0461790:intron | 40.0% | |
| AGAATAGAAGACTAAGGCGT+TGG | - | chr3_3:60325063-60325082 | None:intergenic | 40.0% | |
| AACCCATATGAAAGAGAGAG+GGG | - | chr3_3:60325140-60325159 | None:intergenic | 40.0% | |
| CAACCCATATGAAAGAGAGA+GGG | - | chr3_3:60325141-60325160 | None:intergenic | 40.0% | |
| TCAACCCATATGAAAGAGAG+AGG | - | chr3_3:60325142-60325161 | None:intergenic | 40.0% | |
| ! | GATAACGGTGATATTATGCG+AGG | - | chr3_3:60325223-60325242 | None:intergenic | 40.0% |
| AAGTGAATATGCATGCATGG+TGG | + | chr3_3:60325435-60325454 | Msa0461790:intron | 40.0% | |
| ! | AGGAAACAAAAGGCACAATG+TGG | - | chr3_3:60325487-60325506 | None:intergenic | 40.0% |
| CTAACACTCCGTCTTTCTAA+AGG | + | chr3_3:60326386-60326405 | Msa0461790:intron | 40.0% | |
| GTCCTTCAAATCTCTTCAAG+TGG | - | chr3_3:60326476-60326495 | None:intergenic | 40.0% | |
| AAGAGATTTGAAGGACCAAC+AGG | + | chr3_3:60326480-60326499 | Msa0461790:CDS | 40.0% | |
| TGAAACCATGTTGATCCTGT+TGG | - | chr3_3:60326498-60326517 | None:intergenic | 40.0% | |
| GTTTCCCATATATAAACCGG+TGG | - | chr3_3:60326574-60326593 | None:intergenic | 40.0% | |
| GCTATATGGAACGTCTTCAA+AGG | + | chr3_3:60326762-60326781 | Msa0461790:CDS | 40.0% | |
| ! | CTTCAAAGGCTTTGACATCT+TGG | + | chr3_3:60326776-60326795 | Msa0461790:CDS | 40.0% |
| ! | TCAAAGGCTTTGACATCTTG+GGG | + | chr3_3:60326778-60326797 | Msa0461790:CDS | 40.0% |
| TGCTTGTGTAATTGGATGTC+TGG | + | chr3_3:60326827-60326846 | Msa0461790:CDS | 40.0% | |
| TGAGCTTAGAAGTTGTTGCT+TGG | + | chr3_3:60326862-60326881 | Msa0461790:CDS | 40.0% | |
| TTGCTTGGATTATGTGGCTA+TGG | + | chr3_3:60326877-60326896 | Msa0461790:CDS | 40.0% | |
| ! | GGAAAGGTGTATGAGTTGCA+TGG | - | chr3_3:60322394-60322413 | None:intergenic | 45.0% |
| ! | GAGAGGAATCTAAAACGGGT+AGG | - | chr3_3:60322447-60322466 | None:intergenic | 45.0% |
| ATTTCGGGAACGTACCTAGA+TGG | + | chr3_3:60322703-60322722 | Msa0461790:intron | 45.0% | |
| TCATGCATGGCAAGAAGGAT+TGG | + | chr3_3:60322780-60322799 | Msa0461790:CDS | 45.0% | |
| ! | GTGAGTTTAGCTCAGTTGGT+TGG | + | chr3_3:60323022-60323041 | Msa0461790:intron | 45.0% |
| ATCAATCACTAGCGTCCAGA+CGG | + | chr3_3:60323568-60323587 | Msa0461790:intron | 45.0% | |
| AGTAGAAAAAGCGGACAGAC+GGG | - | chr3_3:60323605-60323624 | None:intergenic | 45.0% | |
| CAGTAGAAAAAGCGGACAGA+CGG | - | chr3_3:60323606-60323625 | None:intergenic | 45.0% | |
| CGTCAGTGCAGTAGAAAAAG+CGG | - | chr3_3:60323614-60323633 | None:intergenic | 45.0% | |
| ATTGTCCAACTTTCGCGTTC+TGG | - | chr3_3:60324977-60324996 | None:intergenic | 45.0% | |
| ACCCCCTCTCTCTTTCATAT+GGG | + | chr3_3:60325135-60325154 | Msa0461790:intron | 45.0% | |
| ACCCATATGAAAGAGAGAGG+GGG | - | chr3_3:60325139-60325158 | None:intergenic | 45.0% | |
| AAGAAAGAGGGGAAAGTGGA+AGG | - | chr3_3:60325715-60325734 | None:intergenic | 45.0% | |
| CGCCACTTGAAGAGATTTGA+AGG | + | chr3_3:60326471-60326490 | Msa0461790:CDS | 45.0% | |
| AAGGACCAACAGGATCAACA+TGG | + | chr3_3:60326490-60326509 | Msa0461790:CDS | 45.0% | |
| GCATTATTATTCGGCACTGC+TGG | + | chr3_3:60326543-60326562 | Msa0461790:CDS | 45.0% | |
| GTGTGTTGTGAATTCCTGGT+TGG | - | chr3_3:60326596-60326615 | None:intergenic | 45.0% | |
| TGTGGTGTGTTGTGAATTCC+TGG | - | chr3_3:60326600-60326619 | None:intergenic | 45.0% | |
| AACACACCACATAGATGCGT+TGG | + | chr3_3:60326609-60326628 | Msa0461790:CDS | 45.0% | |
| GTGATTCCAACGCATCTATG+TGG | - | chr3_3:60326618-60326637 | None:intergenic | 45.0% | |
| ! | CAAAGGCTTTGACATCTTGG+GGG | + | chr3_3:60326779-60326798 | Msa0461790:CDS | 45.0% |
| ! | AAAGGCTTTGACATCTTGGG+GGG | + | chr3_3:60326780-60326799 | Msa0461790:CDS | 45.0% |
| !!! | TTTTATTATTATTTTGTTTT+TGG | - | chr3_3:60324395-60324414 | None:intergenic | 5.0% |
| !! | TATTATTATTATTATTTGTT+TGG | + | chr3_3:60326333-60326352 | Msa0461790:intron | 5.0% |
| CCAACTGAGCTAAACTCACG+AGG | - | chr3_3:60323021-60323040 | None:intergenic | 50.0% | |
| ! | CCTCGTGAGTTTAGCTCAGT+TGG | + | chr3_3:60323018-60323037 | Msa0461790:intron | 50.0% |
| TCAATCACTAGCGTCCAGAC+GGG | + | chr3_3:60323569-60323588 | Msa0461790:intron | 50.0% | |
| TCCACCTTCTCTCTCGCATA+TGG | + | chr3_3:60325086-60325105 | Msa0461790:intron | 50.0% | |
| ACCATATGCGAGAGAGAAGG+TGG | - | chr3_3:60325090-60325109 | None:intergenic | 50.0% | |
| CCAACCATATGCGAGAGAGA+AGG | - | chr3_3:60325093-60325112 | None:intergenic | 50.0% | |
| CCTTCTCTCTCGCATATGGT+TGG | + | chr3_3:60325090-60325109 | Msa0461790:intron | 50.0% | |
| CACCCCCTCTCTCTTTCATA+TGG | + | chr3_3:60325134-60325153 | Msa0461790:intron | 50.0% | |
| TAGGAGGGCTATGCCGATAA+CGG | - | chr3_3:60325238-60325257 | None:intergenic | 50.0% | |
| AAGGTCCGGGGTTCAAACTC+CGG | + | chr3_3:60323064-60323083 | Msa0461790:intron | 55.0% | |
| AAAAAGCGGACAGACGGGCA+CGG | - | chr3_3:60323600-60323619 | None:intergenic | 55.0% | |
| CGCAACCAGAACGCGAAAGT+TGG | + | chr3_3:60324969-60324988 | Msa0461790:intron | 55.0% | |
| ! | GAGGGGGTGCGTTAAGGAAA+AGG | - | chr3_3:60325123-60325142 | None:intergenic | 55.0% |
| ! | AAGAGAGAGGGGGTGCGTTA+AGG | - | chr3_3:60325129-60325148 | None:intergenic | 55.0% |
| AAGTTCACCGCAGCAGTCAC+TGG | - | chr3_3:60325632-60325651 | None:intergenic | 55.0% | |
| AGTGGCCGGAGTTTGAACCC+CGG | - | chr3_3:60323072-60323091 | None:intergenic | 60.0% | |
| AAAAGCGGACAGACGGGCAC+GGG | - | chr3_3:60323599-60323618 | None:intergenic | 60.0% | |
| GACTCCACCAGTGACTGCTG+CGG | + | chr3_3:60325622-60325641 | Msa0461790:intron | 60.0% | |
| TTCACCGCAGCAGTCACTGG+TGG | - | chr3_3:60325629-60325648 | None:intergenic | 60.0% | |
| !!! | GGCACTGCTGGTTTTGCCAC+CGG | + | chr3_3:60326555-60326574 | Msa0461790:CDS | 60.0% |
| !!! | CGGGCACGGGAGTGCCCGTC+TGG | - | chr3_3:60323586-60323605 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 60322319 | 60326929 | 60322319 | ID=Msa0461790;Name=Msa0461790 |
| chr3_3 | mRNA | 60322319 | 60326929 | 60322319 | ID=Msa0461790-mRNA-1;Parent=Msa0461790;Name=Msa0461790-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|0|0|4|0|352 |
| chr3_3 | exon | 60322319 | 60322525 | 60322319 | ID=Msa0461790-mRNA-1:exon:12597;Parent=Msa0461790-mRNA-1 |
| chr3_3 | exon | 60322532 | 60322713 | 60322532 | ID=Msa0461790-mRNA-1:exon:12598;Parent=Msa0461790-mRNA-1 |
| chr3_3 | exon | 60322747 | 60322920 | 60322747 | ID=Msa0461790-mRNA-1:exon:12599;Parent=Msa0461790-mRNA-1 |
| chr3_3 | exon | 60326434 | 60326929 | 60326434 | ID=Msa0461790-mRNA-1:exon:12600;Parent=Msa0461790-mRNA-1 |
| chr3_3 | CDS | 60322319 | 60322525 | 60322319 | ID=Msa0461790-mRNA-1:cds;Parent=Msa0461790-mRNA-1 |
| chr3_3 | CDS | 60322532 | 60322713 | 60322532 | ID=Msa0461790-mRNA-1:cds;Parent=Msa0461790-mRNA-1 |
| chr3_3 | CDS | 60322747 | 60322920 | 60322747 | ID=Msa0461790-mRNA-1:cds;Parent=Msa0461790-mRNA-1 |
| chr3_3 | CDS | 60326434 | 60326929 | 60326434 | ID=Msa0461790-mRNA-1:cds;Parent=Msa0461790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
