AlfalfaGEDB | Msa1068480

M. sativa cultivar zhongmu-4 / Msa1068480

KEGG: K11820|K13691|K21374
GO: GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0006979 GO:0007154 GO:0007275 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009636 GO:0009651 GO:0009653 GO:0009696 GO:0009719 GO:0009725 GO:0009737 GO:0009850 GO:0009987 GO:0009991 GO:0010016 GO:0010029 GO:0010030 GO:0010033 GO:0010035 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0031668 GO:0032501 GO:0032502 GO:0032787 GO:0032870 GO:0033554 GO:0033993 GO:0034599 GO:0034614 GO:0034641 GO:0035251 GO:0035690 GO:0042221 GO:0042430 GO:0042445 GO:0042493 GO:0042537 GO:0042538 GO:0042542 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046483 GO:0046527 GO:0046677 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0051716 GO:0052638 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0070301 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071462 GO:0071470 GO:0071472 GO:0071474 GO:0071475 GO:0071495 GO:0071496 GO:0071704 GO:0080002 GO:0080024 GO:0080043 GO:0080044 GO:0080167 GO:0090704 GO:0097237 GO:0097305 GO:0097306 GO:0104004 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:1901700 GO:1901701 GO:2000026
PFAM: PF00201.21

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1068480	ABN08989.1	92.982	114	8	0	19	132	218	331	5.66e-69	226

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1068480	sp\|K7NBW3\|74AC1_SIRGR	43.103	116	63	2	20	132	213	328	5.51e-26	105

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1068480	A2Q5W9	92.982	114	8	0	19	132	218	331	2.70e-69	226

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0015090	Msa1068480	0.812827	3.485244e-51	-8.615850e-47
Msa0023330	Msa1068480	0.813363	2.658161e-51	-8.615850e-47
Msa0032470	Msa1068480	0.805165	1.523078e-49	-8.615850e-47
Msa0042550	Msa1068480	0.834572	2.773615e-56	-8.615850e-47
Msa0043980	Msa1068480	0.807495	4.916645e-50	-8.615850e-47
Msa0045550	Msa1068480	0.814122	1.809592e-51	-8.615850e-47
Msa0049750	Msa1068480	0.811692	6.165858e-51	-8.615850e-47
Msa0058310	Msa1068480	0.806394	8.403338e-50	-8.615850e-47
Msa0071250	Msa1068480	0.805537	1.272383e-49	-8.615850e-47
Msa0079130	Msa1068480	0.802281	6.043287e-49	-8.615850e-47
Msa0092410	Msa1068480	0.803921	2.766913e-49	-8.615850e-47
Msa0098290	Msa1068480	0.812652	3.806924e-51	-8.615850e-47
Msa0102140	Msa1068480	0.809434	1.896219e-50	-8.615850e-47
Msa0104230	Msa1068480	0.810244	1.269516e-50	-8.615850e-47
Msa0104800	Msa1068480	0.808023	3.795827e-50	-8.615850e-47
Msa0117520	Msa1068480	0.809641	1.711040e-50	-8.615850e-47
Msa0610130	Msa1068480	0.807286	5.443571e-50	-8.615850e-47
Msa0610180	Msa1068480	0.805185	1.508280e-49	-8.615850e-47
Msa0667740	Msa1068480	0.822109	2.824541e-53	-8.615850e-47
Msa0673120	Msa1068480	0.817526	3.150737e-52	-8.615850e-47
Msa0696080	Msa1068480	0.800578	1.349617e-48	-8.615850e-47
Msa0698440	Msa1068480	0.823461	1.368042e-53	-8.615850e-47
Msa0705190	Msa1068480	0.806500	7.982805e-50	-8.615850e-47
Msa0705990	Msa1068480	0.826069	3.321192e-54	-8.615850e-47
Msa0711830	Msa1068480	0.801735	7.824051e-49	-8.615850e-47
Msa0713380	Msa1068480	0.803015	4.265329e-49	-8.615850e-47
Msa0721340	Msa1068480	0.806214	9.172504e-50	-8.615850e-47
Msa0724170	Msa1068480	0.805601	1.233752e-49	-8.615850e-47
Msa0727720	Msa1068480	0.814116	1.814594e-51	-8.615850e-47
Msa0750850	Msa1068480	0.814480	1.507904e-51	-8.615850e-47
Msa0751850	Msa1068480	0.826796	2.228587e-54	-8.615850e-47
Msa0760350	Msa1068480	0.800495	1.403430e-48	-8.615850e-47
Msa0763890	Msa1068480	0.832685	8.209754e-56	-8.615850e-47
Msa0763920	Msa1068480	0.836511	8.967272e-57	-8.615850e-47
Msa0795340	Msa1068480	0.802285	6.033570e-49	-8.615850e-47
Msa0797770	Msa1068480	0.800289	1.545852e-48	-8.615850e-47
Msa0801730	Msa1068480	0.818258	2.153444e-52	-8.615850e-47
Msa0808100	Msa1068480	0.807172	5.754814e-50	-8.615850e-47
Msa0817460	Msa1068480	0.809916	1.493595e-50	-8.615850e-47
Msa0831850	Msa1068480	0.823790	1.146006e-53	-8.615850e-47
Msa0835230	Msa1068480	0.806405	8.358810e-50	-8.615850e-47
Msa0138020	Msa1068480	0.826596	2.487904e-54	-8.615850e-47
Msa0144530	Msa1068480	0.814553	1.453199e-51	-8.615850e-47
Msa0160960	Msa1068480	0.834448	2.979758e-56	-8.615850e-47
Msa0178510	Msa1068480	0.827422	1.578675e-54	-8.615850e-47
Msa0186950	Msa1068480	0.811449	6.963448e-51	-8.615850e-47
Msa0187830	Msa1068480	0.823034	1.721139e-53	-8.615850e-47
Msa0187950	Msa1068480	0.803409	3.534793e-49	-8.615850e-47
Msa0190530	Msa1068480	0.809822	1.564771e-50	-8.615850e-47
Msa0206010	Msa1068480	0.805717	1.166808e-49	-8.615850e-47
Msa0206830	Msa1068480	0.810166	1.319522e-50	-8.615850e-47
Msa0218370	Msa1068480	0.808091	3.671309e-50	-8.615850e-47
Msa0222980	Msa1068480	0.818376	2.024294e-52	-8.615850e-47
Msa0226180	Msa1068480	0.803700	3.075833e-49	-8.615850e-47
Msa0232020	Msa1068480	0.804565	2.032309e-49	-8.615850e-47
Msa0236420	Msa1068480	0.809586	1.758283e-50	-8.615850e-47
Msa0366210	Msa1068480	0.801683	8.020976e-49	-8.615850e-47
Msa0371950	Msa1068480	0.804711	1.894648e-49	-8.615850e-47
Msa0376910	Msa1068480	0.806109	9.647903e-50	-8.615850e-47
Msa0387280	Msa1068480	0.810261	1.258860e-50	-8.615850e-47
Msa0389910	Msa1068480	0.807953	3.929159e-50	-8.615850e-47
Msa0392270	Msa1068480	0.807661	4.532708e-50	-8.615850e-47
Msa0393620	Msa1068480	0.801619	8.265897e-49	-8.615850e-47
Msa0394140	Msa1068480	0.801708	7.924887e-49	-8.615850e-47
Msa0394260	Msa1068480	0.804993	1.654073e-49	-8.615850e-47
Msa0394470	Msa1068480	0.811926	5.482174e-51	-8.615850e-47
Msa0395750	Msa1068480	0.813373	2.644501e-51	-8.615850e-47
Msa0397270	Msa1068480	0.807397	5.157972e-50	-8.615850e-47
Msa0398200	Msa1068480	0.813593	2.365803e-51	-8.615850e-47
Msa0401560	Msa1068480	0.802197	6.290513e-49	-8.615850e-47
Msa0403490	Msa1068480	0.816583	5.132157e-52	-8.615850e-47
Msa0411390	Msa1068480	0.802817	4.685692e-49	-8.615850e-47
Msa0414140	Msa1068480	0.826068	3.321807e-54	-8.615850e-47
Msa0422180	Msa1068480	0.821830	3.276835e-53	-8.615850e-47
Msa0427580	Msa1068480	0.821053	4.953665e-53	-8.615850e-47
Msa0455760	Msa1068480	0.806059	9.883943e-50	-8.615850e-47
Msa0457990	Msa1068480	0.817047	4.037576e-52	-8.615850e-47
Msa0461790	Msa1068480	0.804764	1.846779e-49	-8.615850e-47
Msa0471900	Msa1068480	0.821203	4.574855e-53	-8.615850e-47
Msa0481280	Msa1068480	0.810779	9.726025e-51	-8.615850e-47
Msa0992580	Msa1068480	0.820223	7.685386e-53	-8.615850e-47
Msa0992600	Msa1068480	0.824946	6.127554e-54	-8.615850e-47
Msa0994370	Msa1068480	0.801492	8.778174e-49	-8.615850e-47
Msa1003990	Msa1068480	0.806584	7.664173e-50	-8.615850e-47
Msa1008750	Msa1068480	0.818733	1.680302e-52	-8.615850e-47
Msa1011090	Msa1068480	0.807371	5.222491e-50	-8.615850e-47
Msa1024680	Msa1068480	0.804575	2.022787e-49	-8.615850e-47
Msa1026640	Msa1068480	0.809589	1.755923e-50	-8.615850e-47
Msa1029620	Msa1068480	0.860966	1.428444e-63	-8.615850e-47
Msa1039710	Msa1068480	-0.806512	7.934525e-50	-8.615850e-47
Msa1048900	Msa1068480	0.813875	2.051232e-51	-8.615850e-47
Msa1063420	Msa1068480	0.843022	1.808604e-58	-8.615850e-47
Msa1068480	Msa1074350	0.820362	7.138500e-53	-8.615850e-47
Msa1068480	Msa1076960	0.800649	1.305463e-48	-8.615850e-47
Msa1068480	Msa1096060	0.807188	5.711157e-50	-8.615850e-47
Msa1068480	Msa1098250	0.811293	7.526178e-51	-8.615850e-47
Msa1068480	Msa1137780	0.816170	6.348408e-52	-8.615850e-47
Msa1068480	Msa1143020	0.825967	3.511491e-54	-8.615850e-47
Msa1068480	Msa1144040	0.817581	3.061011e-52	-8.615850e-47
Msa1068480	Msa1162060	0.827040	1.948820e-54	-8.615850e-47
Msa1068480	Msa1177560	0.810006	1.428741e-50	-8.615850e-47
Msa1068480	Msa1185110	0.804312	2.295025e-49	-8.615850e-47
Msa1068480	Msa1207310	0.814275	1.673781e-51	-8.615850e-47
Msa1068480	Msa1209190	0.806040	9.978672e-50	-8.615850e-47
Msa1068480	Msa1221330	0.813723	2.215510e-51	-8.615850e-47
Msa1068480	Msa1224200	0.802584	5.234457e-49	-8.615850e-47
Msa1068480	Msa1224580	-0.822650	2.115026e-53	-8.615850e-47
Msa1068480	Msa1231810	0.809303	2.022482e-50	-8.615850e-47
Msa1068480	Msa1236440	0.815735	7.939471e-52	-8.615850e-47
Msa1068480	Msa1246360	0.812223	4.724162e-51	-8.615850e-47
Msa1068480	Msa1270660	0.843829	1.101636e-58	-8.615850e-47
Msa1068480	Msa1270730	0.853731	1.968762e-61	-8.615850e-47
Msa1068480	Msa1277670	0.811957	5.397654e-51	-8.615850e-47
Msa1068480	Msa1291450	0.803615	3.203121e-49	-8.615850e-47
Msa1068480	Msa1295330	0.820743	5.836598e-53	-8.615850e-47
Msa1068480	Msa1312500	0.814729	1.328457e-51	-8.615850e-47
Msa1068480	Msa1316440	0.801597	8.351133e-49	-8.615850e-47
Msa1068480	Msa1332050	0.833458	5.272613e-56	-8.615850e-47
Msa1068480	Msa1335230	0.843851	1.086317e-58	-8.615850e-47
Msa1068480	Msa1343250	0.817156	3.816510e-52	-8.615850e-47
Msa1068480	Msa1352280	-0.808953	2.403839e-50	-8.615850e-47
Msa1068480	Msa1369920	-0.805996	1.019092e-49	-8.615850e-47
Msa1068480	Msa1372150	0.833365	5.559708e-56	-8.615850e-47
Msa1068480	Msa1374710	0.804382	2.218529e-49	-8.615850e-47
Msa1068480	Msa1394310	0.819925	8.992076e-53	-8.615850e-47
Msa1068480	Msa1397120	0.808913	2.452201e-50	-8.615850e-47
Msa1068480	Msa1400930	0.817880	2.621915e-52	-8.615850e-47
Msa1068480	Msa1401460	0.809961	1.460476e-50	-8.615850e-47
Msa1068480	Msa1403890	0.802343	5.869421e-49	-8.615850e-47
Msa1068480	Msa1423820	0.847303	1.259586e-59	-8.615850e-47
Msa1068480	Msa1424630	0.812194	4.793963e-51	-8.615850e-47
Msa1068480	Msa1425260	0.825601	4.289255e-54	-8.615850e-47
Msa1068480	Msa1428780	0.830117	3.518209e-55	-8.615850e-47
Msa1068480	Msa1430130	0.803190	3.923748e-49	-8.615850e-47
Msa1068480	Msa1430550	0.806483	8.047841e-50	-8.615850e-47
Msa1068480	Msa1460750	0.800360	1.494706e-48	-8.615850e-47
Msa1068480	Msa1462360	0.811551	6.615312e-51	-8.615850e-47
Msa1068480	Msa1463900	0.800318	1.524844e-48	-8.615850e-47
Msa0240270	Msa1068480	0.835618	1.510846e-56	-8.615850e-47
Msa0241140	Msa1068480	0.824274	8.822515e-54	-8.615850e-47
Msa0262370	Msa1068480	0.811358	7.285040e-51	-8.615850e-47
Msa0264310	Msa1068480	0.815095	1.102032e-51	-8.615850e-47
Msa0265150	Msa1068480	0.802721	4.904431e-49	-8.615850e-47
Msa0269560	Msa1068480	0.820865	5.472856e-53	-8.615850e-47
Msa0270960	Msa1068480	0.804264	2.348626e-49	-8.615850e-47
Msa0288120	Msa1068480	0.816339	5.818280e-52	-8.615850e-47
Msa0290870	Msa1068480	0.804613	1.986524e-49	-8.615850e-47
Msa0300150	Msa1068480	0.802282	6.041342e-49	-8.615850e-47
Msa0305410	Msa1068480	0.803687	3.095857e-49	-8.615850e-47
Msa0319170	Msa1068480	0.800359	1.495778e-48	-8.615850e-47
Msa0326110	Msa1068480	0.807403	5.141754e-50	-8.615850e-47
Msa0326750	Msa1068480	0.821476	3.957157e-53	-8.615850e-47
Msa0337590	Msa1068480	0.820218	7.704680e-53	-8.615850e-47
Msa0347950	Msa1068480	0.805473	1.312209e-49	-8.615850e-47
Msa0485490	Msa1068480	0.820643	6.155308e-53	-8.615850e-47
Msa0518170	Msa1068480	0.836485	9.103920e-57	-8.615850e-47
Msa0521270	Msa1068480	0.817287	3.566354e-52	-8.615850e-47
Msa0521670	Msa1068480	0.803154	3.992269e-49	-8.615850e-47
Msa0521740	Msa1068480	0.802149	6.432476e-49	-8.615850e-47
Msa0530290	Msa1068480	0.830421	2.965441e-55	-8.615850e-47
Msa0562570	Msa1068480	0.802530	5.370679e-49	-8.615850e-47
Msa0566350	Msa1068480	0.817630	2.985365e-52	-8.615850e-47
Msa0566750	Msa1068480	0.825461	4.628718e-54	-8.615850e-47
Msa0573890	Msa1068480	0.805641	1.210036e-49	-8.615850e-47
Msa0581400	Msa1068480	0.804698	1.906433e-49	-8.615850e-47
Msa0844110	Msa1068480	0.829958	3.845632e-55	-8.615850e-47
Msa0879600	Msa1068480	0.807269	5.490451e-50	-8.615850e-47
Msa0894710	Msa1068480	0.819077	1.403677e-52	-8.615850e-47
Msa0902830	Msa1068480	0.815462	9.132148e-52	-8.615850e-47
Msa0921420	Msa1068480	0.815108	1.094697e-51	-8.615850e-47
Msa0936390	Msa1068480	0.822523	2.262977e-53	-8.615850e-47
Msa0960390	Msa1068480	0.832772	7.811325e-56	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1068480	MtrunA17_Chr7g0249931	92.982	114	8	0	19	132	246	359	7.35e-73	226
Msa1068480	MtrunA17_Chr7g0250021	77.064	109	25	0	19	127	218	326	7.38e-60	188
Msa1068480	MtrunA17_Chr7g0249961	63.934	122	43	1	18	138	21	142	1.64e-49	160
Msa1068480	MtrunA17_Chr7g0249981	63.636	121	43	1	19	138	229	349	1.73e-48	163
Msa1068480	MtrunA17_Chr7g0250001	63.636	121	43	1	19	138	210	330	2.15e-47	159
Msa1068480	MtrunA17_Chr6g0464871	57.391	115	46	2	20	132	230	343	8.37e-38	134
Msa1068480	MtrunA17_Chr6g0464841	54.472	123	53	2	19	139	217	338	3.15e-37	132
Msa1068480	MtrunA17_Chr6g0464881	53.913	115	50	2	20	132	218	331	4.34e-37	132
Msa1068480	MtrunA17_Chr6g0464921	54.310	116	49	3	20	132	218	332	7.06e-36	129
Msa1068480	MtrunA17_Chr6g0464861	51.639	122	56	2	20	139	217	337	4.15e-34	124
Msa1068480	MtrunA17_Chr5g0414331	47.573	103	51	2	33	132	228	330	3.29e-23	94.4
Msa1068480	MtrunA17_Chr5g0414321	46.602	103	52	2	33	132	226	328	6.39e-22	90.9
Msa1068480	MtrunA17_Chr8g0380531	40.678	118	65	3	19	132	218	334	1.03e-17	79.0
Msa1068480	MtrunA17_Chr8g0377921	40.594	101	56	1	31	127	229	329	3.05e-17	77.8
Msa1068480	MtrunA17_Chr3g0122001	43.750	80	42	1	35	111	717	796	2.01e-16	75.5
Msa1068480	MtrunA17_Chr3g0122001	42.500	80	43	1	35	111	237	316	2.32e-15	72.4
Msa1068480	MtrunA17_Chr3g0121991	42.500	80	43	1	35	111	310	389	1.69e-15	72.8
Msa1068480	MtrunA17_Chr1g0207981	39.806	103	56	3	35	132	248	349	5.03e-15	71.2
Msa1068480	MtrunA17_Chr8g0377941	42.708	96	42	3	35	127	248	333	3.34e-14	68.9
Msa1068480	MtrunA17_Chr1g0161351	38.655	119	60	4	23	132	258	372	5.62e-14	68.2
Msa1068480	MtrunA17_Chr1g0207861	42.202	109	50	5	33	132	239	343	1.85e-13	67.0
Msa1068480	MtrunA17_Chr7g0243611	35.537	121	67	3	26	139	101	217	2.91e-13	65.9
Msa1068480	MtrunA17_Chr3g0098111	40.367	109	52	4	33	132	240	344	3.84e-13	65.9
Msa1068480	MtrunA17_Chr7g0243801	41.379	87	42	3	26	111	236	314	5.78e-13	65.5
Msa1068480	MtrunA17_Chr7g0243771	41.379	87	42	3	26	111	235	313	6.07e-13	65.5
Msa1068480	MtrunA17_Chr5g0401721	33.019	106	64	2	34	132	242	347	7.96e-13	65.1
Msa1068480	MtrunA17_Chr7g0243631	37.113	97	57	1	26	122	242	334	7.98e-13	65.1
Msa1068480	MtrunA17_Chr1g0207931	40.367	109	52	4	33	132	268	372	1.41e-12	64.3
Msa1068480	MtrunA17_Chr7g0243681	37.190	121	60	4	26	139	240	351	1.64e-12	63.9
Msa1068480	MtrunA17_Chr8g0365811	38.318	107	52	4	18	122	713	807	1.76e-12	64.3
Msa1068480	MtrunA17_Chr8g0365811	34.653	101	56	3	18	116	231	323	4.22e-12	63.2
Msa1068480	MtrunA17_Chr1g0207951	40.777	103	52	4	33	132	887	983	2.67e-12	63.5
Msa1068480	MtrunA17_Chr1g0207951	46.377	69	33	2	65	132	382	447	8.97e-11	59.3
Msa1068480	MtrunA17_Chr5g0442601	42.308	52	30	0	60	111	657	708	2.90e-12	63.5
Msa1068480	MtrunA17_Chr7g0235051	37.143	105	59	2	35	132	215	319	3.48e-12	63.2
Msa1068480	MtrunA17_Chr5g0393591	51.852	54	26	0	62	115	252	305	3.77e-12	63.2
Msa1068480	MtrunA17_Chr7g0243781	39.535	86	40	3	26	111	238	311	3.80e-12	63.2
Msa1068480	MtrunA17_Chr4g0044481	41.026	78	42	2	59	132	259	336	3.98e-12	62.8
Msa1068480	MtrunA17_Chr8g0361371	39.130	92	38	2	63	136	254	345	4.20e-12	62.8
Msa1068480	MtrunA17_Chr7g0243811	39.535	86	40	3	26	111	213	286	4.43e-12	62.8
Msa1068480	MtrunA17_Chr4g0053501	41.975	81	37	2	62	132	261	341	4.77e-12	62.8
Msa1068480	MtrunA17_Chr8g0334831	53.061	49	23	0	63	111	253	301	4.87e-12	62.8
Msa1068480	MtrunA17_Chr7g0243711	38.961	77	47	0	35	111	78	154	5.30e-12	62.4
Msa1068480	MtrunA17_Chr4g0053321	41.975	81	37	2	62	132	276	356	5.46e-12	62.8
Msa1068480	MtrunA17_Chr5g0442521	32.877	73	49	0	39	111	235	307	5.94e-12	62.4
Msa1068480	MtrunA17_Chr7g0243951	37.363	91	52	2	26	115	240	326	7.19e-12	62.4
Msa1068480	MtrunA17_Chr7g0243861	35.922	103	61	2	26	127	243	341	1.21e-11	61.6
Msa1068480	MtrunA17_Chr5g0401851	50.980	51	25	0	65	115	276	326	1.58e-11	61.2
Msa1068480	MtrunA17_Chr5g0409591	33.962	106	63	3	35	135	240	343	2.45e-11	60.8
Msa1068480	MtrunA17_Chr7g0243871	38.211	123	54	8	19	132	229	338	3.20e-11	60.5
Msa1068480	MtrunA17_Chr4g0042891	38.532	109	48	4	34	132	243	342	6.16e-11	59.7
Msa1068480	MtrunA17_Chr7g0243761	35.088	114	63	3	26	132	240	349	8.27e-11	59.3
Msa1068480	MtrunA17_Chr1g0207971	38.095	105	54	5	33	132	232	330	8.55e-11	59.3
Msa1068480	MtrunA17_Chr8g0366391	38.750	80	45	2	57	132	269	348	9.57e-11	58.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1068480	AT1G05680.1	42.735	117	63	3	19	132	214	329	3.72e-24	97.4
Msa1068480	AT2G31750.1	43.103	116	62	3	20	132	215	329	8.07e-24	96.7
Msa1068480	AT2G31750.2	43.103	116	62	3	20	132	215	329	8.84e-24	96.7
Msa1068480	AT1G05675.1	42.735	117	63	3	19	132	214	329	2.57e-23	95.1
Msa1068480	AT2G31790.1	40.336	119	64	4	20	132	216	333	1.02e-22	93.6
Msa1068480	AT2G43820.1	47.826	92	43	3	34	122	221	310	9.56e-20	85.1
Msa1068480	AT2G43840.1	43.478	92	47	2	34	122	221	310	1.64e-19	84.3
Msa1068480	AT2G43840.2	43.478	92	47	2	34	122	221	310	1.69e-19	84.3
Msa1068480	AT1G24100.1	42.157	102	57	1	35	134	234	335	4.00e-19	83.6
Msa1068480	AT4G15480.1	37.864	103	54	3	33	129	250	348	1.41e-13	67.4
Msa1068480	AT2G28080.1	32.000	125	68	5	18	132	235	352	2.83e-12	63.9
Msa1068480	AT1G07250.1	33.645	107	60	3	32	131	244	346	4.31e-12	63.2
Msa1068480	AT3G16520.3	33.043	115	61	4	32	136	234	342	8.43e-12	62.4
Msa1068480	AT3G16520.2	32.432	111	59	4	32	132	234	338	1.02e-11	62.0
Msa1068480	AT3G16520.1	32.432	111	59	4	32	132	234	338	1.06e-11	62.0
Msa1068480	AT2G29710.1	40.541	74	40	2	62	131	262	335	2.58e-11	60.8
Msa1068480	AT1G07260.1	31.967	122	71	4	18	131	228	345	5.92e-11	60.1
Msa1068480	AT4G34135.1	36.250	80	47	2	57	132	272	351	5.99e-11	60.1
Msa1068480	AT4G15500.1	35.294	102	56	3	31	126	237	334	6.57e-11	59.7
Msa1068480	AT3G21560.1	37.037	81	51	0	34	114	246	326	8.60e-11	59.7

Find 18 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTATGTTTCATTTGGGAGTA+TGG	0.241418	7_2:-63424442	Msa1068480:CDS
TCTGTTGTTTATGTTTCATT+TGG	0.269067	7_2:-63424450	Msa1068480:CDS
TGAAGATTTGGTCCAACTTT+AGG	0.275771	7_2:-63424596	Msa1068480:CDS
TTCTGATAGAAAACTGCTTC+TGG	0.320806	7_2:+63424238	None:intergenic
CTGTTGTTTATGTTTCATTT+GGG	0.362285	7_2:-63424449	Msa1068480:CDS
CTGATTGGACAGTGAAGATT+TGG	0.396882	7_2:-63424608	Msa1068480:CDS
GGCTAAATAATAAGCCAAAA+AGG	0.404240	7_2:-63424473	Msa1068480:CDS
ATGCTTTGTAGGTGGCTGAT+TGG	0.463116	7_2:-63424623	Msa1068480:intron
ACTCAATGAGGAACAAATAG+AGG	0.483111	7_2:-63424415	Msa1068480:CDS
TTTGAAAAGAAATCAGAGAA+TGG	0.483547	7_2:-63424309	Msa1068480:CDS
GCACATTGTTTGAAAGATTG+TGG	0.490834	7_2:-63424387	Msa1068480:CDS
AGGCCCTACGGTCCTAAAGT+TGG	0.523956	7_2:+63424584	None:intergenic
TGGTCCAACTTTAGGACCGT+AGG	0.528491	7_2:-63424588	Msa1068480:CDS
TGGGAGCTTAATCTCTTCAG+AGG	0.533679	7_2:+63424338	None:intergenic
GGTCCAACTTTAGGACCGTA+GGG	0.573039	7_2:-63424587	Msa1068480:CDS
AAAGTGATGAGAGTATAGAA+TGG	0.588142	7_2:-63424494	Msa1068480:CDS
ATATGGTAGGCAAGGCCCTA+CGG	0.606429	7_2:+63424572	None:intergenic
GAGTATGGCATCACTCAATG+AGG	0.672707	7_2:-63424427	Msa1068480:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTACAAACAATTTAAATATA+TGG	+	chr7_2:63424393-63424412	None:intergenic	10.0%
!!!	ATTTCTTTTCAAAGTTTTTT+GGG	+	chr7_2:63424811-63424830	None:intergenic	15.0%
!!!	TATTTTTAGGTCCAAAATTA+GGG	-	chr7_2:63424276-63424295	Msa1068480:CDS	20.0%
!!	TATCTAAAAATGTATATGGT+AGG	+	chr7_2:63424571-63424590	None:intergenic	20.0%
!!!	GATTTCTTTTCAAAGTTTTT+TGG	+	chr7_2:63424812-63424831	None:intergenic	20.0%
!!	AGAATTGAGCAAGTATTTTT+AGG	-	chr7_2:63424263-63424282	Msa1068480:CDS	25.0%
!!!	GTATTTTTAGGTCCAAAATT+AGG	-	chr7_2:63424275-63424294	Msa1068480:CDS	25.0%
!!	TACATGTTATACCCTAATTT+TGG	+	chr7_2:63424290-63424309	None:intergenic	25.0%
!!!	GTCTTTAGTTATGCTATTTT+TGG	+	chr7_2:63424426-63424445	None:intergenic	25.0%
!	AATGACTATAAATGCTTTGT+AGG	-	chr7_2:63424493-63424512	Msa1068480:CDS	25.0%
!	CGCTTATCTAAAAATGTATA+TGG	+	chr7_2:63424575-63424594	None:intergenic	25.0%
!!	TCTGTTGTTTATGTTTCATT+TGG	-	chr7_2:63424677-63424696	Msa1068480:intron	25.0%
!!	CTGTTGTTTATGTTTCATTT+GGG	-	chr7_2:63424678-63424697	Msa1068480:intron	25.0%
!!!	ATTGTGGAAGTTACTTTTTA+TGG	-	chr7_2:63424756-63424775	Msa1068480:intron	25.0%
!!!	TTGTGGAAGTTACTTTTTAT+GGG	-	chr7_2:63424757-63424776	Msa1068480:intron	25.0%
!	TTTGAAAAGAAATCAGAGAA+TGG	-	chr7_2:63424818-63424837	Msa1068480:intron	25.0%
	GTTAATCACATGTAAAATCG+TGG	-	chr7_2:63424310-63424329	Msa1068480:CDS	30.0%
	TTACAAAAGCAACACAAAAG+TGG	+	chr7_2:63424461-63424480	None:intergenic	30.0%
	AAAAATGTATATGGTAGGCA+AGG	+	chr7_2:63424566-63424585	None:intergenic	30.0%
!	AAAGTGATGAGAGTATAGAA+TGG	-	chr7_2:63424633-63424652	Msa1068480:intron	30.0%
	GGCTAAATAATAAGCCAAAA+AGG	-	chr7_2:63424654-63424673	Msa1068480:intron	30.0%
!	ACATAAACAACAGACCTTTT+TGG	+	chr7_2:63424671-63424690	None:intergenic	30.0%
	TTATGTTTCATTTGGGAGTA+TGG	-	chr7_2:63424685-63424704	Msa1068480:intron	30.0%
	ACACAAAAGTGGTATGCTTA+CGG	+	chr7_2:63424450-63424469	None:intergenic	35.0%
	GACTATAAATGCTTTGTAGG+TGG	-	chr7_2:63424496-63424515	Msa1068480:CDS	35.0%
!	TGAAGATTTGGTCCAACTTT+AGG	-	chr7_2:63424531-63424550	Msa1068480:CDS	35.0%
	ACTCAATGAGGAACAAATAG+AGG	-	chr7_2:63424712-63424731	Msa1068480:intron	35.0%
	GCACATTGTTTGAAAGATTG+TGG	-	chr7_2:63424740-63424759	Msa1068480:intron	35.0%
	TTCTGATAGAAAACTGCTTC+TGG	+	chr7_2:63424892-63424911	None:intergenic	35.0%
	CTGATTGGACAGTGAAGATT+TGG	-	chr7_2:63424519-63424538	Msa1068480:CDS	40.0%
	ATGCTTTGTAGGTGGCTGAT+TGG	-	chr7_2:63424504-63424523	Msa1068480:CDS	45.0%
	GAGTATGGCATCACTCAATG+AGG	-	chr7_2:63424700-63424719	Msa1068480:intron	45.0%
	TGGGAGCTTAATCTCTTCAG+AGG	+	chr7_2:63424792-63424811	None:intergenic	45.0%
!!	TGGTCCAACTTTAGGACCGT+AGG	-	chr7_2:63424539-63424558	Msa1068480:CDS	50.0%
!!	GGTCCAACTTTAGGACCGTA+GGG	-	chr7_2:63424540-63424559	Msa1068480:CDS	50.0%
	ATATGGTAGGCAAGGCCCTA+CGG	+	chr7_2:63424558-63424577	None:intergenic	50.0%
	AGGCCCTACGGTCCTAAAGT+TGG	+	chr7_2:63424546-63424565	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	63424215	63424934	63424215	ID=Msa1068480;Name=Msa1068480
chr7_2	mRNA	63424215	63424934	63424215	ID=Msa1068480-mRNA-1;Parent=Msa1068480;Name=Msa1068480-mRNA-1;_AED=0.65;_eAED=0.65;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|159
chr7_2	exon	63424875	63424934	63424875	ID=Msa1068480-mRNA-1:exon:13166;Parent=Msa1068480-mRNA-1
chr7_2	exon	63424215	63424634	63424215	ID=Msa1068480-mRNA-1:exon:13165;Parent=Msa1068480-mRNA-1
chr7_2	CDS	63424875	63424934	63424875	ID=Msa1068480-mRNA-1:cds;Parent=Msa1068480-mRNA-1
chr7_2	CDS	63424215	63424634	63424215	ID=Msa1068480-mRNA-1:cds;Parent=Msa1068480-mRNA-1

Gene Sequence

>Msa1068480

ATGCAATTGATCAGAGACAGTTCAGATGACTCAAGATGCAAGAAAAGAAGAATTGAGCAAGTGGCTGATTGGACAGTGAAGATTTGGTCCAACTTTAGGACCGTAGGGCCTTGCCTACCATATACATTTTTAGATAAGCGAGTTAAAGATGATGAAGATTATGTTATTGCACAATTAAAAAGTGATGAGAGTATAGAATGGCTAAATAATAAGCCAAAAAGGTCTGTTGTTTATGTTTCATTTGGGAGTATGGCATCACTCAATGAGGAACAAATAGAGGAAGTAGCACATTGTTTGAAAGATTGTGGAAGTTACTTTTTATGGGTAGTGAAAACCTCTGAAGAGATTAAGCTCCCAAAAAACTTTGAAAAGAAATCAGAGAATGGCTTAGTTGTTGTTAGCGCAGCAAGCTTGTTGAACAAGCAATCAGAAAACCAGAAGCAGTTTTCTATCAGAAGCAGTTTCTATCAGAAGCAGTAA

Protein sequence

>Msa1068480

MQLIRDSSDDSRCKKRRIEQVADWTVKIWSNFRTVGPCLPYTFLDKRVKDDEDYVIAQLKSDESIEWLNNKPKRSVVYVSFGSMASLNEEQIEEVAHCLKDCGSYFLWVVKTSEEIKLPKNFEKKSENGLVVVSAASLLNKQSENQKQFSIRSSFYQKQ*