AlfalfaGEDB | Msa0574730

M. sativa cultivar zhongmu-4 / Msa0574730

KEGG: K14011
GO: GO:0000323 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005765 GO:0005768 GO:0005769 GO:0005770 GO:0005773 GO:0005774 GO:0005829 GO:0006508 GO:0006807 GO:0006810 GO:0006914 GO:0006950 GO:0006952 GO:0007034 GO:0007041 GO:0008150 GO:0008152 GO:0008333 GO:0009056 GO:0009057 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010008 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016192 GO:0016197 GO:0016236 GO:0019538 GO:0019898 GO:0030163 GO:0031090 GO:0031410 GO:0031901 GO:0031902 GO:0031982 GO:0032509 GO:0032510 GO:0032991 GO:0033554 GO:0034976 GO:0036503 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044437 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051704 GO:0051707 GO:0051716 GO:0061919 GO:0071704 GO:0071985 GO:0097708 GO:0098542 GO:0098588 GO:0098805 GO:0098852 GO:1901564 GO:1901565 GO:1901575 GO:1901698
PFAM: PF09409.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574730	XP_003630914.1	95.699	465	16	2	1	463	1	463	0.0	885

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574730	sp\|Q9ZU93\|PUX2_ARATH	61.297	478	146	8	1	460	1	457	0.0	544

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574730	G7LAI2	95.699	465	16	2	1	463	1	463	0.0	885

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TFs/TRs:

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Gene ID	Type	Classification
Msa0574730	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0092410	Msa0574730	0.824160	9.383897e-54	-8.615850e-47
Msa0098290	Msa0574730	0.819949	8.875969e-53	-8.615850e-47
Msa0117520	Msa0574730	0.816284	5.985448e-52	-8.615850e-47
Msa0138020	Msa0574730	0.816197	6.259611e-52	-8.615850e-47
Msa0152560	Msa0574730	0.823622	1.254747e-53	-8.615850e-47
Msa0160960	Msa0574730	0.841449	4.718844e-58	-8.615850e-47
Msa0183760	Msa0574730	0.802721	4.904244e-49	-8.615850e-47
Msa0186320	Msa0574730	0.819275	1.265311e-52	-8.615850e-47
Msa0187830	Msa0574730	0.833088	6.518964e-56	-8.615850e-47
Msa0217700	Msa0574730	0.801480	8.828909e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574730	MtrunA17_Chr8g0391471	95.699	465	16	2	1	463	1	463	0.0	885

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0574730	AT2G01650.2	61.297	478	146	8	1	460	1	457	0.0	544
Msa0574730	AT2G01650.1	61.297	478	146	8	1	460	1	457	0.0	544
Msa0574730	AT2G01650.3	59.204	402	125	8	1	384	1	381	4.07e-151	435

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Find 117 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACAGAATCTGTTTCT+AGG	0.337000	4_1:+78409246	None:intergenic
AAACCACGCAAACCCGCAGA+TGG	0.614242	4_1:-78411658	Msa0574730:CDS
AAAGAGAATAGTGAAAAGTA+AGG	0.457100	4_1:+78409130	None:intergenic
AAAGGCCAAGGTCGAGTCTT+GGG	0.431284	4_1:-78411811	Msa0574730:CDS
AAATGGATCAAAGCCATCTG+CGG	0.612029	4_1:+78411645	None:intergenic
AAATTAACTTTCTCCTCGAT+AGG	0.558665	4_1:+78411169	None:intergenic
AACAACAGAATCTGTTTCTA+GGG	0.439799	4_1:+78409247	None:intergenic
AACAATATCAACCGAACCTT+CGG	0.364505	4_1:+78411372	None:intergenic
AACCTCGTCCTCGGATCGAA+AGG	0.485306	4_1:+78411543	None:intergenic
AACCTGAGAATGTTAAGTTT+AGG	0.430889	4_1:-78411321	Msa0574730:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GATGTAAAAGACAAGATGAA+AGG	-	chr4_1:78409094-78409113	Msa0574730:three_prime_UTR	30.0%
TCTTCTTCTGGTAAATTCAA+AGG	-	chr4_1:78409151-78409170	Msa0574730:three_prime_UTR	30.0%
TCTTCTCAAAGATCTCAAAA+TGG	-	chr4_1:78409373-78409392	Msa0574730:CDS	30.0%
TTCTGAGTCTAATACTGAAT+TGG	-	chr4_1:78409549-78409568	Msa0574730:intron	30.0%
ACTGAATTGGAGATTTCTAT+TGG	-	chr4_1:78409562-78409581	Msa0574730:intron	30.0%
TCTATTGGTACTTATGTTTC+AGG	-	chr4_1:78409577-78409596	Msa0574730:intron	30.0%
CTATTGGTACTTATGTTTCA+GGG	-	chr4_1:78409578-78409597	Msa0574730:intron	30.0%
AACCTGAGAATGTTAAGTTT+AGG	-	chr4_1:78409659-78409678	Msa0574730:intron	30.0%
TTCCTAAACTTAACATTCTC+AGG	+	chr4_1:78409664-78409683	None:intergenic	30.0%
TAAGTTTAGGAAGATTAGGA+TGG	-	chr4_1:78409672-78409691	Msa0574730:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	78408972	78412030	78408972	ID=Msa0574730;Name=Msa0574730
chr4_1	mRNA	78408972	78412030	78408972	ID=Msa0574730-mRNA-1;Parent=Msa0574730;Name=Msa0574730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=116\|1\|1\|1\|1\|1\|3\|218\|463
chr4_1	exon	78408972	78409429	78408972	ID=Msa0574730-mRNA-1:exon:27816;Parent=Msa0574730-mRNA-1
chr4_1	exon	78409666	78409944	78409666	ID=Msa0574730-mRNA-1:exon:27815;Parent=Msa0574730-mRNA-1
chr4_1	exon	78411042	78412030	78411042	ID=Msa0574730-mRNA-1:exon:27814;Parent=Msa0574730-mRNA-1
chr4_1	five_prime_UTR	78411915	78412030	78411915	ID=Msa0574730-mRNA-1:five_prime_utr;Parent=Msa0574730-mRNA-1
chr4_1	CDS	78411042	78411914	78411042	ID=Msa0574730-mRNA-1:cds;Parent=Msa0574730-mRNA-1
chr4_1	CDS	78409666	78409944	78409666	ID=Msa0574730-mRNA-1:cds;Parent=Msa0574730-mRNA-1
chr4_1	CDS	78409190	78409429	78409190	ID=Msa0574730-mRNA-1:cds;Parent=Msa0574730-mRNA-1
chr4_1	three_prime_UTR	78408972	78409189	78408972	ID=Msa0574730-mRNA-1:three_prime_utr;Parent=Msa0574730-mRNA-1

Gene Sequence

>Msa0574730

ATGGACGATGTAAAAGACAAGATGAAAGGATTCATCAAGAAAGTTAACAACCCTTTCACTTCTTCTTCTTCTGGTAAATTCAAAGGCCAAGGTCGAGTCTTGGGTTCTTCTTCTTCTTCTTCTTCTTCAACACCTGCAAATTCCATTCCTACCCCTACCCCTCGTCCTTCTCAGAACCCTAATCCCAAACCCAAACCTACTCCACCGATCGCTTCAGATCAAAGCAAAATCGATAAACCACGCAAACCCGCAGATGGCTTTGATCCATTTGATTCATTCGTCACTTCTTCTCAAAGATCTCAAAATGGCTATTCACTCAACGTATATGAATGTCCAATTTGTAAACAACCCTTTCGATCCGAGGACGAGGTTTCTGAACACGTGGAATCTTGTTTGAGTAACCCAATTGAAAACGATGATGATGATGAAAAATGTGTGTCAAAATTGAAAGAGAGTCAAGTTTCTGAGTCTAATACTGAATTGGAGATTTCTATTGGTACTTATGTTTCAGGGAATCCGTCCGAAGGTTCGGTTGATATTGTTCTTAAATTGTTGAGGAATATTGTTAAGGAACCTGAGAATGTTAAGTTTAGGAAGATTAGGATGGGTAATCCAAAGATTAAAGAAGCTGTCGGCGAGGTTATTGGTGGTGTTGAATTGCTGAGTTTGTTAGGATTTGAACTTAAAGAGGAGAATGGAGAGACATGGGCATTCATGGAGGTTCCTATCGAGGAGAAAGTTAATTTGATCAAGAAAGCAATTGTGTTGTTGGAACCACAATTGGTTCAAGATACTCCAAAGAGAGAAACTTTAACACCTACCGTTTCCGCTGAGAAAGTAGCCGAGGCCGAACCAAAAAAGATTGACAGACAGGTGAAGGTCTTCTTTGCTGTCTCTGAAAGTGTTGCAGCTAGAATTGAGCTACCAGATTCCTTCTACAAACGTTCAGCTGAAGAGGTGAGAAAAGAAGCTGAATTAAGGAGAAAAAAGATTGAAGAGTCTCAGCTTTTAATCCCAAAGTCACTTAAAGAAAAGCAAGCTAAAGCTGCGAAGAAGAGATACACAAGAACTATTATTAGGATTCAGTTTTCAGATGGAGTTGTACTTCAAGGTGTATTTGCTCCATGGGAACCAACTACTGCTCTGTATGAGTTTGTGAGCTCTGCTTTAAAAGAATCATGTTTGGAATTTGAGCTAATGCATCCTGTAGTTGTTCAACGGCGTGTAATCCCATGTTTCCCAAAAGCAGGGCAAAAAGCCAAAACGATAGAGGAAGAAGACCTGGTGCCTTCTGCCCTAATCAAGTTCAAGCCCCTAGAAACAGATTCTGTTGTTTTCACCGGTCTCAAAAATGAATTGCTGGAAATCAGTGAACCACTTGTAAATGGTTAA

Protein sequence

>Msa0574730

MDDVKDKMKGFIKKVNNPFTSSSSGKFKGQGRVLGSSSSSSSSTPANSIPTPTPRPSQNPNPKPKPTPPIASDQSKIDKPRKPADGFDPFDSFVTSSQRSQNGYSLNVYECPICKQPFRSEDEVSEHVESCLSNPIENDDDDEKCVSKLKESQVSESNTELEISIGTYVSGNPSEGSVDIVLKLLRNIVKEPENVKFRKIRMGNPKIKEAVGEVIGGVELLSLLGFELKEENGETWAFMEVPIEEKVNLIKKAIVLLEPQLVQDTPKRETLTPTVSAEKVAEAEPKKIDRQVKVFFAVSESVAARIELPDSFYKRSAEEVRKEAELRRKKIEESQLLIPKSLKEKQAKAAKKRYTRTIIRIQFSDGVVLQGVFAPWEPTTALYEFVSSALKESCLEFELMHPVVVQRRVIPCFPKAGQKAKTIEEEDLVPSALIKFKPLETDSVVFTGLKNELLEISEPLVNG*