Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574730 | XP_003630914.1 | 95.699 | 465 | 16 | 2 | 1 | 463 | 1 | 463 | 0.0 | 885 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574730 | sp|Q9ZU93|PUX2_ARATH | 61.297 | 478 | 146 | 8 | 1 | 460 | 1 | 457 | 0.0 | 544 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574730 | G7LAI2 | 95.699 | 465 | 16 | 2 | 1 | 463 | 1 | 463 | 0.0 | 885 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0574730 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092410 | Msa0574730 | 0.824160 | 9.383897e-54 | -8.615850e-47 |
| Msa0098290 | Msa0574730 | 0.819949 | 8.875969e-53 | -8.615850e-47 |
| Msa0117520 | Msa0574730 | 0.816284 | 5.985448e-52 | -8.615850e-47 |
| Msa0138020 | Msa0574730 | 0.816197 | 6.259611e-52 | -8.615850e-47 |
| Msa0152560 | Msa0574730 | 0.823622 | 1.254747e-53 | -8.615850e-47 |
| Msa0160960 | Msa0574730 | 0.841449 | 4.718844e-58 | -8.615850e-47 |
| Msa0183760 | Msa0574730 | 0.802721 | 4.904244e-49 | -8.615850e-47 |
| Msa0186320 | Msa0574730 | 0.819275 | 1.265311e-52 | -8.615850e-47 |
| Msa0187830 | Msa0574730 | 0.833088 | 6.518964e-56 | -8.615850e-47 |
| Msa0217700 | Msa0574730 | 0.801480 | 8.828909e-49 | -8.615850e-47 |
| Msa0231060 | Msa0574730 | 0.838092 | 3.530872e-57 | -8.615850e-47 |
| Msa0371950 | Msa0574730 | 0.827958 | 1.173275e-54 | -8.615850e-47 |
| Msa0386010 | Msa0574730 | 0.807357 | 5.258074e-50 | -8.615850e-47 |
| Msa0389210 | Msa0574730 | 0.830604 | 2.674075e-55 | -8.615850e-47 |
| Msa0410860 | Msa0574730 | 0.822728 | 2.028143e-53 | -8.615850e-47 |
| Msa0411430 | Msa0574730 | 0.800260 | 1.566300e-48 | -8.615850e-47 |
| Msa0417330 | Msa0574730 | 0.809594 | 1.751677e-50 | -8.615850e-47 |
| Msa0461790 | Msa0574730 | 0.817943 | 2.537321e-52 | -8.615850e-47 |
| Msa0464100 | Msa0574730 | 0.806279 | 8.885096e-50 | -8.615850e-47 |
| Msa0240270 | Msa0574730 | 0.816261 | 6.057188e-52 | -8.615850e-47 |
| Msa0267370 | Msa0574730 | 0.808474 | 3.042200e-50 | -8.615850e-47 |
| Msa0267790 | Msa0574730 | 0.824280 | 8.793306e-54 | -8.615850e-47 |
| Msa0269560 | Msa0574730 | 0.833297 | 5.782523e-56 | -8.615850e-47 |
| Msa0271550 | Msa0574730 | 0.802372 | 5.787650e-49 | -8.615850e-47 |
| Msa0278580 | Msa0574730 | 0.801876 | 7.320695e-49 | -8.615850e-47 |
| Msa0296820 | Msa0574730 | 0.800931 | 1.143021e-48 | -8.615850e-47 |
| Msa0296870 | Msa0574730 | 0.802063 | 6.702816e-49 | -8.615850e-47 |
| Msa0307310 | Msa0574730 | 0.805222 | 1.481157e-49 | -8.615850e-47 |
| Msa0310440 | Msa0574730 | 0.835757 | 1.393594e-56 | -8.615850e-47 |
| Msa0314070 | Msa0574730 | 0.818483 | 1.914357e-52 | -8.615850e-47 |
| Msa0319290 | Msa0574730 | 0.804358 | 2.244183e-49 | -8.615850e-47 |
| Msa0321080 | Msa0574730 | 0.811717 | 6.087003e-51 | -8.615850e-47 |
| Msa0348550 | Msa0574730 | 0.818509 | 1.888662e-52 | -8.615850e-47 |
| Msa0518170 | Msa0574730 | 0.815109 | 1.093868e-51 | -8.615850e-47 |
| Msa0521670 | Msa0574730 | 0.821439 | 4.034901e-53 | -8.615850e-47 |
| Msa0526070 | Msa0574730 | -0.809765 | 1.609308e-50 | -8.615850e-47 |
| Msa0526730 | Msa0574730 | 0.806649 | 7.424072e-50 | -8.615850e-47 |
| Msa0562570 | Msa0574730 | 0.806588 | 7.647880e-50 | -8.615850e-47 |
| Msa0566750 | Msa0574730 | 0.810872 | 9.285231e-51 | -8.615850e-47 |
| Msa0568680 | Msa0574730 | 0.813626 | 2.327644e-51 | -8.615850e-47 |
| Msa0573890 | Msa0574730 | 0.817829 | 2.691885e-52 | -8.615850e-47 |
| Msa0574600 | Msa0574730 | 0.839652 | 1.393669e-57 | -8.615850e-47 |
| Msa0574730 | Msa0613340 | 0.819085 | 1.397366e-52 | -8.615850e-47 |
| Msa0574730 | Msa0614920 | 0.853903 | 1.756077e-61 | -8.615850e-47 |
| Msa0574730 | Msa0618470 | 0.809661 | 1.694773e-50 | -8.615850e-47 |
| Msa0574730 | Msa0622170 | -0.810377 | 1.187886e-50 | -8.615850e-47 |
| Msa0574730 | Msa0661720 | 0.809445 | 1.885996e-50 | -8.615850e-47 |
| Msa0574730 | Msa0662580 | 0.817215 | 3.701977e-52 | -8.615850e-47 |
| Msa0574730 | Msa0673120 | 0.801297 | 9.624160e-49 | -8.615850e-47 |
| Msa0574730 | Msa0679020 | 0.822662 | 2.101631e-53 | -8.615850e-47 |
| Msa0574730 | Msa0708310 | 0.855347 | 6.705024e-62 | -8.615850e-47 |
| Msa0574730 | Msa0711150 | 0.827198 | 1.785801e-54 | -8.615850e-47 |
| Msa0574730 | Msa0741070 | 0.804865 | 1.759620e-49 | -8.615850e-47 |
| Msa0574730 | Msa0742150 | 0.801044 | 1.083990e-48 | -8.615850e-47 |
| Msa0574730 | Msa0772740 | 0.829851 | 4.083378e-55 | -8.615850e-47 |
| Msa0574730 | Msa0794210 | 0.802577 | 5.251342e-49 | -8.615850e-47 |
| Msa0574730 | Msa0805910 | 0.806872 | 6.662247e-50 | -8.615850e-47 |
| Msa0574730 | Msa0817650 | 0.802240 | 6.162126e-49 | -8.615850e-47 |
| Msa0574730 | Msa0830230 | 0.807338 | 5.306254e-50 | -8.615850e-47 |
| Msa0574730 | Msa0898320 | 0.807680 | 4.491322e-50 | -8.615850e-47 |
| Msa0574730 | Msa0935770 | 0.807678 | 4.494260e-50 | -8.615850e-47 |
| Msa0574730 | Msa0936390 | 0.803569 | 3.274978e-49 | -8.615850e-47 |
| Msa0574730 | Msa1030810 | 0.815031 | 1.138420e-51 | -8.615850e-47 |
| Msa0574730 | Msa1034310 | 0.830165 | 3.424698e-55 | -8.615850e-47 |
| Msa0574730 | Msa1039710 | -0.808040 | 3.765282e-50 | -8.615850e-47 |
| Msa0574730 | Msa1137780 | 0.804518 | 2.078347e-49 | -8.615850e-47 |
| Msa0574730 | Msa1162780 | 0.818593 | 1.807915e-52 | -8.615850e-47 |
| Msa0574730 | Msa1173490 | 0.808611 | 2.844618e-50 | -8.615850e-47 |
| Msa0574730 | Msa1200250 | 0.809293 | 2.032413e-50 | -8.615850e-47 |
| Msa0574730 | Msa1221330 | 0.805771 | 1.136567e-49 | -8.615850e-47 |
| Msa0574730 | Msa1225100 | 0.807713 | 4.418401e-50 | -8.615850e-47 |
| Msa0574730 | Msa1236440 | 0.803500 | 3.385103e-49 | -8.615850e-47 |
| Msa0574730 | Msa1246700 | 0.830801 | 2.393916e-55 | -8.615850e-47 |
| Msa0574730 | Msa1259860 | 0.805700 | 1.176427e-49 | -8.615850e-47 |
| Msa0574730 | Msa1279480 | 0.831937 | 1.257468e-55 | -8.615850e-47 |
| Msa0574730 | Msa1280150 | 0.802131 | 6.489408e-49 | -8.615850e-47 |
| Msa0574730 | Msa1329870 | 0.806522 | 7.895644e-50 | -8.615850e-47 |
| Msa0574730 | Msa1338400 | 0.842593 | 2.352107e-58 | -8.615850e-47 |
| Msa0574730 | Msa1352280 | -0.819054 | 1.420604e-52 | -8.615850e-47 |
| Msa0574730 | Msa1353890 | 0.838400 | 2.942111e-57 | -8.615850e-47 |
| Msa0574730 | Msa1355890 | 0.822667 | 2.095535e-53 | -8.615850e-47 |
| Msa0574730 | Msa1365270 | 0.824605 | 7.372053e-54 | -8.615850e-47 |
| Msa0574730 | Msa1372280 | 0.834326 | 3.197653e-56 | -8.615850e-47 |
| Msa0574730 | Msa1376450 | 0.815028 | 1.139985e-51 | -8.615850e-47 |
| Msa0574730 | Msa1380220 | 0.821576 | 3.752292e-53 | -8.615850e-47 |
| Msa0574730 | Msa1391550 | 0.813783 | 2.149347e-51 | -8.615850e-47 |
| Msa0574730 | Msa1398900 | 0.812526 | 4.055592e-51 | -8.615850e-47 |
| Msa0574730 | Msa1400930 | 0.812673 | 3.765686e-51 | -8.615850e-47 |
| Msa0574730 | Msa1424630 | 0.823094 | 1.666394e-53 | -8.615850e-47 |
| Msa0574730 | Msa1428780 | 0.819468 | 1.143360e-52 | -8.615850e-47 |
| Msa0574730 | Msa1430550 | 0.835390 | 1.725291e-56 | -8.615850e-47 |
| Msa0574730 | Msa1452710 | 0.806025 | 1.005129e-49 | -8.615850e-47 |
| Msa0574730 | Msa1457160 | 0.826484 | 2.645000e-54 | -8.615850e-47 |
| Msa0574730 | Msa1462360 | 0.837015 | 6.669005e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574730 | MtrunA17_Chr8g0391471 | 95.699 | 465 | 16 | 2 | 1 | 463 | 1 | 463 | 0.0 | 885 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0574730 | AT2G01650.2 | 61.297 | 478 | 146 | 8 | 1 | 460 | 1 | 457 | 0.0 | 544 |
| Msa0574730 | AT2G01650.1 | 61.297 | 478 | 146 | 8 | 1 | 460 | 1 | 457 | 0.0 | 544 |
| Msa0574730 | AT2G01650.3 | 59.204 | 402 | 125 | 8 | 1 | 384 | 1 | 381 | 4.07e-151 | 435 |
Find 117 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTCAAATGAAATCGATTT+TGG | 0.091794 | 4_1:+78411946 | None:intergenic |
| ATCTATATCCCCACCATTTA+AGG | 0.124389 | 4_1:+78409100 | None:intergenic |
| TCTATTGGTACTTATGTTTC+AGG | 0.140987 | 4_1:-78411403 | Msa0574730:CDS |
| GTAGGTTTGGGTTTGGGATT+AGG | 0.175605 | 4_1:+78411715 | None:intergenic |
| CGAAAGGGTTGTTTACAAAT+TGG | 0.223879 | 4_1:+78411559 | None:intergenic |
| CCTTTCACTTCTTCTTCTTC+TGG | 0.238978 | 4_1:-78411841 | Msa0574730:CDS |
| CTAGGGGCTTGAACTTGATT+AGG | 0.247442 | 4_1:+78409264 | None:intergenic |
| CCGACAGCTTCTTTAATCTT+TGG | 0.248839 | 4_1:+78411280 | None:intergenic |
| GGTGTTAAAGTTTCTCTCTT+TGG | 0.252715 | 4_1:+78411097 | None:intergenic |
| TAGGTTTGGGTTTGGGATTA+GGG | 0.259606 | 4_1:+78411716 | None:intergenic |
| GATACACAAGAACTATTATT+AGG | 0.271026 | 4_1:-78409738 | Msa0574730:CDS |
| TGAGAAAAGAAGCTGAATTA+AGG | 0.281067 | 4_1:-78409837 | Msa0574730:CDS |
| GGTGGAGTAGGTTTGGGTTT+GGG | 0.283318 | 4_1:+78411709 | None:intergenic |
| GTCTTCTTCCTCTATCGTTT+TGG | 0.294303 | 4_1:+78409301 | None:intergenic |
| ATCAGTGAACCACTTGTAAA+TGG | 0.308403 | 4_1:-78409194 | Msa0574730:CDS |
| GAAGCTGTCGGCGAGGTTAT+TGG | 0.322760 | 4_1:-78411268 | Msa0574730:CDS |
| ACTGAATTGGAGATTTCTAT+TGG | 0.324761 | 4_1:-78411418 | Msa0574730:CDS |
| TGCTTTAAAAGAATCATGTT+TGG | 0.332951 | 4_1:-78409396 | Msa0574730:CDS |
| AAACAACAGAATCTGTTTCT+AGG | 0.337000 | 4_1:+78409246 | None:intergenic |
| CGGTGGAGTAGGTTTGGGTT+TGG | 0.338165 | 4_1:+78411708 | None:intergenic |
| TTCCTAAACTTAACATTCTC+AGG | 0.339946 | 4_1:+78411319 | None:intergenic |
| GTTGAATTGCTGAGTTTGTT+AGG | 0.350477 | 4_1:-78411241 | Msa0574730:CDS |
| TTCTGAGTCTAATACTGAAT+TGG | 0.356720 | 4_1:-78411431 | Msa0574730:CDS |
| TTCAGCTGAACGTTTGTAGA+AGG | 0.363666 | 4_1:+78409864 | None:intergenic |
| AACAATATCAACCGAACCTT+CGG | 0.364505 | 4_1:+78411372 | None:intergenic |
| TCTTCTCAAAGATCTCAAAA+TGG | 0.368840 | 4_1:-78411607 | Msa0574730:CDS |
| AGCGATCGGTGGAGTAGGTT+TGG | 0.369595 | 4_1:+78411702 | None:intergenic |
| AGGGAATCCGTCCGAAGGTT+CGG | 0.371473 | 4_1:-78411383 | Msa0574730:CDS |
| ATGTTAAGTTTAGGAAGATT+AGG | 0.375559 | 4_1:-78411312 | Msa0574730:CDS |
| CAAGAAAGCAATTGTGTTGT+TGG | 0.381393 | 4_1:-78411143 | Msa0574730:CDS |
| GCGATCGGTGGAGTAGGTTT+GGG | 0.384107 | 4_1:+78411703 | None:intergenic |
| TGGAGAGACATGGGCATTCA+TGG | 0.387114 | 4_1:-78411197 | Msa0574730:CDS |
| TAGGGGCTTGAACTTGATTA+GGG | 0.388598 | 4_1:+78409265 | None:intergenic |
| TTTGAACTTAAAGAGGAGAA+TGG | 0.410145 | 4_1:-78411217 | Msa0574730:CDS |
| GGGGTAGGAATGGAATTTGC+AGG | 0.422062 | 4_1:+78411760 | None:intergenic |
| TCAGATGGAGTTGTACTTCA+AGG | 0.423651 | 4_1:-78409706 | Msa0574730:CDS |
| AACCTGAGAATGTTAAGTTT+AGG | 0.430889 | 4_1:-78411321 | Msa0574730:CDS |
| AAAGGCCAAGGTCGAGTCTT+GGG | 0.431284 | 4_1:-78411811 | Msa0574730:CDS |
| ATTGTTGAGGAATATTGTTA+AGG | 0.431444 | 4_1:-78411344 | Msa0574730:CDS |
| AACAACAGAATCTGTTTCTA+GGG | 0.439799 | 4_1:+78409247 | None:intergenic |
| TCATGAATGTAGGTAGGAAT+TGG | 0.442163 | 4_1:+78408980 | None:intergenic |
| GAACGTTTGTAGAAGGAATC+TGG | 0.447302 | 4_1:+78409871 | None:intergenic |
| TCTATATCCCCACCATTTAA+GGG | 0.449661 | 4_1:+78409101 | None:intergenic |
| CTATTGGTACTTATGTTTCA+GGG | 0.450380 | 4_1:-78411402 | Msa0574730:CDS |
| AAAGAGAATAGTGAAAAGTA+AGG | 0.457100 | 4_1:+78409130 | None:intergenic |
| TGTGTTGTTGGAACCACAAT+TGG | 0.459857 | 4_1:-78411131 | Msa0574730:CDS |
| ATCCCATGTTTCCCAAAAGC+AGG | 0.471596 | 4_1:-78409332 | Msa0574730:CDS |
| TCTGAGAAGGACGAGGGGTA+GGG | 0.472504 | 4_1:+78411740 | None:intergenic |
| TCTTCTTCTGGTAAATTCAA+AGG | 0.474590 | 4_1:-78411829 | Msa0574730:CDS |
| GGCTACTTTCTCAGCGGAAA+CGG | 0.475468 | 4_1:+78411072 | None:intergenic |
| CAAAGGCCAAGGTCGAGTCT+TGG | 0.475772 | 4_1:-78411812 | Msa0574730:CDS |
| TTCTGAGAAGGACGAGGGGT+AGG | 0.483289 | 4_1:+78411739 | None:intergenic |
| CTGAGAAGGACGAGGGGTAG+GGG | 0.483771 | 4_1:+78411741 | None:intergenic |
| GTTAGGATTTGAACTTAAAG+AGG | 0.484850 | 4_1:-78411224 | Msa0574730:CDS |
| AACCTCGTCCTCGGATCGAA+AGG | 0.485306 | 4_1:+78411543 | None:intergenic |
| ACCAACTACTGCTCTGTATG+AGG | 0.485891 | 4_1:-78409665 | Msa0574730:intron |
| TTCAAGGTGTATTTGCTCCA+TGG | 0.496010 | 4_1:-78409690 | Msa0574730:CDS |
| TAAGTTTAGGAAGATTAGGA+TGG | 0.496165 | 4_1:-78411308 | Msa0574730:CDS |
| CAAAATTATGAATGAAAATG+AGG | 0.497430 | 4_1:+78409067 | None:intergenic |
| ACCCTTTCGATCCGAGGACG+AGG | 0.506482 | 4_1:-78411545 | Msa0574730:CDS |
| CAGAAGAAGAAGAAGTGAAA+GGG | 0.507446 | 4_1:+78411842 | None:intergenic |
| CTACAAACGTTCAGCTGAAG+AGG | 0.515065 | 4_1:-78409860 | Msa0574730:CDS |
| TCAAGGTGTATTTGCTCCAT+GGG | 0.515302 | 4_1:-78409689 | Msa0574730:CDS |
| CCAGAAGAAGAAGAAGTGAA+AGG | 0.518931 | 4_1:+78411841 | None:intergenic |
| GTGGGGATATAGATACAATT+CGG | 0.520478 | 4_1:-78409091 | Msa0574730:three_prime_UTR |
| GAAGTGACGAATGAATCAAA+TGG | 0.527530 | 4_1:+78411628 | None:intergenic |
| ACCTCGTCCTCGGATCGAAA+GGG | 0.530145 | 4_1:+78411544 | None:intergenic |
| GTGTTCAGAAACCTCGTCCT+CGG | 0.530401 | 4_1:+78411534 | None:intergenic |
| ATATTGTTCTTAAATTGTTG+AGG | 0.534264 | 4_1:-78411357 | Msa0574730:CDS |
| AAGCCATCTGCGGGTTTGCG+TGG | 0.535106 | 4_1:+78411655 | None:intergenic |
| TTGCTTTGATCTGAAGCGAT+CGG | 0.538206 | 4_1:+78411688 | None:intergenic |
| CTTTGATCTGAAGCGATCGG+TGG | 0.538600 | 4_1:+78411691 | None:intergenic |
| AGAGCAGTAGTTGGTTCCCA+TGG | 0.544179 | 4_1:+78409673 | None:intergenic |
| ACACGCCGTTGAACAACTAC+AGG | 0.546054 | 4_1:+78409356 | None:intergenic |
| TCTGGTAAATTCAAAGGCCA+AGG | 0.550240 | 4_1:-78411823 | Msa0574730:CDS |
| GAAGGACGAGGGGTAGGGGT+AGG | 0.552141 | 4_1:+78411745 | None:intergenic |
| TGATTAGGGCAGAAGGCACC+AGG | 0.553360 | 4_1:+78409279 | None:intergenic |
| ACGAGGGGTAGGGGTAGGAA+TGG | 0.557142 | 4_1:+78411750 | None:intergenic |
| AAATTAACTTTCTCCTCGAT+AGG | 0.558665 | 4_1:+78411169 | None:intergenic |
| TTGGGATTAGGGTTCTGAGA+AGG | 0.565323 | 4_1:+78411727 | None:intergenic |
| AAGTTTAGGAAGATTAGGAT+GGG | 0.568581 | 4_1:-78411307 | Msa0574730:CDS |
| ATATATTGCCTCATGAATGT+AGG | 0.569788 | 4_1:+78408970 | None:intergenic |
| GGAGTATCTTGAACCAATTG+TGG | 0.569841 | 4_1:+78411118 | None:intergenic |
| AATGGATCAAAGCCATCTGC+GGG | 0.571592 | 4_1:+78411646 | None:intergenic |
| AATGCTTAACCATTTACAAG+TGG | 0.577084 | 4_1:+78409185 | None:intergenic |
| TCTGAAGCGATCGGTGGAGT+AGG | 0.577813 | 4_1:+78411697 | None:intergenic |
| TTGAACTTGATTAGGGCAGA+AGG | 0.585290 | 4_1:+78409272 | None:intergenic |
| TAAACAACCCTTTCGATCCG+AGG | 0.585535 | 4_1:-78411551 | Msa0574730:CDS |
| GATGTAAAAGACAAGATGAA+AGG | 0.585648 | 4_1:-78411886 | Msa0574730:CDS |
| AAGAACCCAAGACTCGACCT+TGG | 0.590087 | 4_1:+78411806 | None:intergenic |
| AAGAGGAGAATGGAGAGACA+TGG | 0.592517 | 4_1:-78411207 | Msa0574730:CDS |
| ACCTCATACAGAGCAGTAGT+TGG | 0.594344 | 4_1:+78409664 | None:intergenic |
| TGCATCCTGTAGTTGTTCAA+CGG | 0.598631 | 4_1:-78409361 | Msa0574730:CDS |
| TTAGGGTTCTGAGAAGGACG+AGG | 0.599978 | 4_1:+78411733 | None:intergenic |
| AACGATAGAGGAAGAAGACC+TGG | 0.600898 | 4_1:-78409297 | Msa0574730:CDS |
| CTATATCCCCACCATTTAAG+GGG | 0.603070 | 4_1:+78409102 | None:intergenic |
| GTTTCAGGGAATCCGTCCGA+AGG | 0.605694 | 4_1:-78411388 | Msa0574730:CDS |
| AAATGGATCAAAGCCATCTG+CGG | 0.612029 | 4_1:+78411645 | None:intergenic |
| GCTGTCGGCGAGGTTATTGG+TGG | 0.612219 | 4_1:-78411265 | Msa0574730:CDS |
| AAACCACGCAAACCCGCAGA+TGG | 0.614242 | 4_1:-78411658 | Msa0574730:CDS |
| TCCCATGTTTCCCAAAAGCA+GGG | 0.615985 | 4_1:-78409331 | Msa0574730:CDS |
| AGAGGAGAATGGAGAGACAT+GGG | 0.617493 | 4_1:-78411206 | Msa0574730:CDS |
| ATATCAACCGAACCTTCGGA+CGG | 0.624730 | 4_1:+78411376 | None:intergenic |
| CCAAAGATTAAAGAAGCTGT+CGG | 0.630530 | 4_1:-78411280 | Msa0574730:CDS |
| ACAACAGAATCTGTTTCTAG+GGG | 0.631709 | 4_1:+78409248 | None:intergenic |
| ATTGCCTCATGAATGTAGGT+AGG | 0.633785 | 4_1:+78408974 | None:intergenic |
| TAGGGTTCTGAGAAGGACGA+GGG | 0.637909 | 4_1:+78411734 | None:intergenic |
| TTCCGCTGAGAAAGTAGCCG+AGG | 0.652725 | 4_1:-78411068 | Msa0574730:CDS |
| ACTTTCTCAGCGGAAACGGT+AGG | 0.653113 | 4_1:+78411076 | None:intergenic |
| ATTCATGGAGGTTCCTATCG+AGG | 0.656729 | 4_1:-78411182 | Msa0574730:CDS |
| AATTCCTACCTACATTCATG+AGG | 0.671047 | 4_1:-78408978 | Msa0574730:three_prime_UTR |
| GATTAAAGAAGCTGTCGGCG+AGG | 0.675362 | 4_1:-78411275 | Msa0574730:CDS |
| TATATCCCCACCATTTAAGG+GGG | 0.679374 | 4_1:+78409103 | None:intergenic |
| GGACGAGGTTTCTGAACACG+TGG | 0.689204 | 4_1:-78411530 | Msa0574730:CDS |
| GGCCTCGGCTACTTTCTCAG+CGG | 0.713672 | 4_1:+78411066 | None:intergenic |
| AGAGACATGGGCATTCATGG+AGG | 0.723039 | 4_1:-78411194 | Msa0574730:CDS |
| AGGGTTCTGAGAAGGACGAG+GGG | 0.727880 | 4_1:+78411735 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTACTATATTAAATG+TGG | - | chr4_1:78410103-78410122 | Msa0574730:intron | 10.0% |
| !!! | AAGATTTTTTTTATTGTATT+AGG | + | chr4_1:78410572-78410591 | None:intergenic | 10.0% |
| !!! | AATCAAATTCAAAAGTATTA+TGG | + | chr4_1:78409979-78409998 | None:intergenic | 15.0% |
| !! | AAGTTAAAATCAAATAGAAA+AGG | + | chr4_1:78411346-78411365 | None:intergenic | 15.0% |
| !! | ATATTGTTCTTAAATTGTTG+AGG | - | chr4_1:78409623-78409642 | Msa0574730:intron | 20.0% |
| !!! | AATACTTTTGAATTTGATTG+AGG | - | chr4_1:78409980-78409999 | Msa0574730:intron | 20.0% |
| !!! | ATACTTTTGAATTTGATTGA+GGG | - | chr4_1:78409981-78410000 | Msa0574730:intron | 20.0% |
| !! | TATTACTATATTAAATGTGG+TGG | - | chr4_1:78410106-78410125 | Msa0574730:intron | 20.0% |
| !!! | TTGAATATTTGGTTTAAACT+TGG | - | chr4_1:78410281-78410300 | Msa0574730:intron | 20.0% |
| !!! | ATATACTGAAATTTGTTGAT+AGG | - | chr4_1:78410371-78410390 | Msa0574730:intron | 20.0% |
| !!! | TTTGTATGTTGGTTTAAATT+TGG | - | chr4_1:78410406-78410425 | Msa0574730:intron | 20.0% |
| !!! | ATAAAAACTATTTTCAACCA+AGG | - | chr4_1:78410615-78410634 | Msa0574730:intron | 20.0% |
| !!! | TAAAAACTATTTTCAACCAA+GGG | - | chr4_1:78410616-78410635 | Msa0574730:intron | 20.0% |
| !! | ACTAAAATACTCAAAGAAAA+AGG | + | chr4_1:78410903-78410922 | None:intergenic | 20.0% |
| !! | CATAATCAATCTAAAGAATT+AGG | + | chr4_1:78411004-78411023 | None:intergenic | 20.0% |
| !! | CAAAATTATGAATGAAAATG+AGG | + | chr4_1:78411916-78411935 | None:intergenic | 20.0% |
| !!! | GAAAGAAGTGATTGTTTTAA+GGG | + | chr4_1:78409001-78409020 | None:intergenic | 25.0% |
| !!! | TCTCAAATGAAATCGATTTT+GGG | + | chr4_1:78409036-78409055 | None:intergenic | 25.0% |
| !!! | ATCTCAAATGAAATCGATTT+TGG | + | chr4_1:78409037-78409056 | None:intergenic | 25.0% |
| !! | TTTTTCTTCATAGTCGAAAA+TGG | - | chr4_1:78409069-78409088 | Msa0574730:three_prime_UTR | 25.0% |
| ! | ATTGTTGAGGAATATTGTTA+AGG | - | chr4_1:78409636-78409655 | Msa0574730:intron | 25.0% |
| ! | ATGTTAAGTTTAGGAAGATT+AGG | - | chr4_1:78409668-78409687 | Msa0574730:CDS | 25.0% |
| !!! | ATATCATTGATTTTGCGTTA+TGG | - | chr4_1:78410152-78410171 | Msa0574730:intron | 25.0% |
| ! | AAACTTGGTTGTATAAATAG+AGG | - | chr4_1:78410296-78410315 | Msa0574730:intron | 25.0% |
| ! | AACTTGGTTGTATAAATAGA+GGG | - | chr4_1:78410297-78410316 | Msa0574730:intron | 25.0% |
| ! | TTAAACCAACATACAAAAGT+TGG | + | chr4_1:78410403-78410422 | None:intergenic | 25.0% |
| ! | TTGCATAAAAGTAGAAAAGT+CGG | - | chr4_1:78410590-78410609 | Msa0574730:intron | 25.0% |
| ! | CAATATAGCTTATGAAAACA+GGG | + | chr4_1:78410711-78410730 | None:intergenic | 25.0% |
| !!! | ATGTCATAAGCTATTTTCAT+AGG | - | chr4_1:78410778-78410797 | Msa0574730:intron | 25.0% |
| !!! | CTTTGAGTATTTTAGTTTGA+TGG | - | chr4_1:78410907-78410926 | Msa0574730:intron | 25.0% |
| ! | GATACACAAGAACTATTATT+AGG | - | chr4_1:78411242-78411261 | Msa0574730:CDS | 25.0% |
| !!! | CAAACGTAAATTGTTATTTG+GGG | + | chr4_1:78411412-78411431 | None:intergenic | 25.0% |
| !!! | CCAAACGTAAATTGTTATTT+GGG | + | chr4_1:78411413-78411432 | None:intergenic | 25.0% |
| !! | TCCAAACGTAAATTGTTATT+TGG | + | chr4_1:78411414-78411433 | None:intergenic | 25.0% |
| !! | CTAGTGTATTACATTTTGAA+TGG | - | chr4_1:78411446-78411465 | Msa0574730:CDS | 25.0% |
| !!! | TGCTTTAAAAGAATCATGTT+TGG | - | chr4_1:78411584-78411603 | Msa0574730:CDS | 25.0% |
| ! | AAAGAGAATAGTGAAAAGTA+AGG | + | chr4_1:78411853-78411872 | None:intergenic | 25.0% |
| !! | CGAAAGAAGTGATTGTTTTA+AGG | + | chr4_1:78409002-78409021 | None:intergenic | 30.0% |
| !! | CTCAAATGAAATCGATTTTG+GGG | + | chr4_1:78409035-78409054 | None:intergenic | 30.0% |
| GATGTAAAAGACAAGATGAA+AGG | - | chr4_1:78409094-78409113 | Msa0574730:three_prime_UTR | 30.0% | |
| TCTTCTTCTGGTAAATTCAA+AGG | - | chr4_1:78409151-78409170 | Msa0574730:three_prime_UTR | 30.0% | |
| TCTTCTCAAAGATCTCAAAA+TGG | - | chr4_1:78409373-78409392 | Msa0574730:CDS | 30.0% | |
| ! | CATCATCATCGTTTTCAATT+GGG | + | chr4_1:78409492-78409511 | None:intergenic | 30.0% |
| ! | TCATCATCATCGTTTTCAAT+TGG | + | chr4_1:78409493-78409512 | None:intergenic | 30.0% |
| TTCTGAGTCTAATACTGAAT+TGG | - | chr4_1:78409549-78409568 | Msa0574730:intron | 30.0% | |
| ACTGAATTGGAGATTTCTAT+TGG | - | chr4_1:78409562-78409581 | Msa0574730:intron | 30.0% | |
| TCTATTGGTACTTATGTTTC+AGG | - | chr4_1:78409577-78409596 | Msa0574730:intron | 30.0% | |
| CTATTGGTACTTATGTTTCA+GGG | - | chr4_1:78409578-78409597 | Msa0574730:intron | 30.0% | |
| AACCTGAGAATGTTAAGTTT+AGG | - | chr4_1:78409659-78409678 | Msa0574730:intron | 30.0% | |
| TTCCTAAACTTAACATTCTC+AGG | + | chr4_1:78409664-78409683 | None:intergenic | 30.0% | |
| TAAGTTTAGGAAGATTAGGA+TGG | - | chr4_1:78409672-78409691 | Msa0574730:CDS | 30.0% | |
| AAGTTTAGGAAGATTAGGAT+GGG | - | chr4_1:78409673-78409692 | Msa0574730:CDS | 30.0% | |
| GTTAGGATTTGAACTTAAAG+AGG | - | chr4_1:78409756-78409775 | Msa0574730:CDS | 30.0% | |
| TTTGAACTTAAAGAGGAGAA+TGG | - | chr4_1:78409763-78409782 | Msa0574730:CDS | 30.0% | |
| AAATTAACTTTCTCCTCGAT+AGG | + | chr4_1:78409814-78409833 | None:intergenic | 30.0% | |
| !!! | TCTGTCAATCTTTTTTGGTT+CGG | + | chr4_1:78409938-78409957 | None:intergenic | 30.0% |
| ACTTGGTTGTATAAATAGAG+GGG | - | chr4_1:78410298-78410317 | Msa0574730:intron | 30.0% | |
| ! | TTTGTCCAACTTTTGTATGT+TGG | - | chr4_1:78410395-78410414 | Msa0574730:intron | 30.0% |
| TTAAATTTGGCTGTAATGCA+AGG | - | chr4_1:78410419-78410438 | Msa0574730:intron | 30.0% | |
| TGCTTAAACCTTTACTTGAT+AGG | + | chr4_1:78410488-78410507 | None:intergenic | 30.0% | |
| CTTAGGGTGTAAATATACTT+GGG | + | chr4_1:78410539-78410558 | None:intergenic | 30.0% | |
| TCTTAGGGTGTAAATATACT+TGG | + | chr4_1:78410540-78410559 | None:intergenic | 30.0% | |
| ATTAGGATGAGTTTCTCTTA+GGG | + | chr4_1:78410555-78410574 | None:intergenic | 30.0% | |
| TATTAGGATGAGTTTCTCTT+AGG | + | chr4_1:78410556-78410575 | None:intergenic | 30.0% | |
| ! | CAAGGGTATACTTTGTTTAT+GGG | - | chr4_1:78410633-78410652 | Msa0574730:intron | 30.0% |
| CCAATATAGCTTATGAAAAC+AGG | + | chr4_1:78410712-78410731 | None:intergenic | 30.0% | |
| ! | CCTGTTTTCATAAGCTATAT+TGG | - | chr4_1:78410709-78410728 | Msa0574730:intron | 30.0% |
| ! | CCTTATTTGAGTTTATCTAC+TGG | + | chr4_1:78410834-78410853 | None:intergenic | 30.0% |
| CCAGTAGATAAACTCAAATA+AGG | - | chr4_1:78410831-78410850 | Msa0574730:intron | 30.0% | |
| TCAAATAAGGTAATCCAAAC+AGG | - | chr4_1:78410844-78410863 | Msa0574730:intron | 30.0% | |
| ! | TTTTTCATAAAGAGCCTGTT+TGG | + | chr4_1:78410861-78410880 | None:intergenic | 30.0% |
| GATTCAAATTTACCTCTTTC+AGG | - | chr4_1:78411036-78411055 | Msa0574730:intron | 30.0% | |
| TGAGAAAAGAAGCTGAATTA+AGG | - | chr4_1:78411143-78411162 | Msa0574730:CDS | 30.0% | |
| ! | GCTTTTCTTTAAGTGACTTT+GGG | + | chr4_1:78411201-78411220 | None:intergenic | 30.0% |
| ! | TGCTTTTCTTTAAGTGACTT+TGG | + | chr4_1:78411202-78411221 | None:intergenic | 30.0% |
| ! | ATTAGGATTCAGTTTTCAGA+TGG | - | chr4_1:78411259-78411278 | Msa0574730:CDS | 30.0% |
| TAACTTATGCCTTTCAATTG+TGG | - | chr4_1:78411360-78411379 | Msa0574730:CDS | 30.0% | |
| GGTTAATTTCCACAATTGAA+AGG | + | chr4_1:78411372-78411391 | None:intergenic | 30.0% | |
| CCCAAATAACAATTTACGTT+TGG | - | chr4_1:78411410-78411429 | Msa0574730:CDS | 30.0% | |
| !! | AACAACAGAATCTGTTTCTA+GGG | + | chr4_1:78411736-78411755 | None:intergenic | 30.0% |
| ! | AAACAACAGAATCTGTTTCT+AGG | + | chr4_1:78411737-78411756 | None:intergenic | 30.0% |
| AATGCTTAACCATTTACAAG+TGG | + | chr4_1:78411798-78411817 | None:intergenic | 30.0% | |
| !! | AAATGAAATCGATTTTGGGG+TGG | + | chr4_1:78409032-78409051 | None:intergenic | 35.0% |
| CAGAAGAAGAAGAAGTGAAA+GGG | + | chr4_1:78409141-78409160 | None:intergenic | 35.0% | |
| GAAGTGACGAATGAATCAAA+TGG | + | chr4_1:78409355-78409374 | None:intergenic | 35.0% | |
| CGAAAGGGTTGTTTACAAAT+TGG | + | chr4_1:78409424-78409443 | None:intergenic | 35.0% | |
| AACAATATCAACCGAACCTT+CGG | + | chr4_1:78409611-78409630 | None:intergenic | 35.0% | |
| CCAAAGATTAAAGAAGCTGT+CGG | - | chr4_1:78409700-78409719 | Msa0574730:CDS | 35.0% | |
| ! | GTTGAATTGCTGAGTTTGTT+AGG | - | chr4_1:78409739-78409758 | Msa0574730:CDS | 35.0% |
| CAAGAAAGCAATTGTGTTGT+TGG | - | chr4_1:78409837-78409856 | Msa0574730:CDS | 35.0% | |
| GGTGTTAAAGTTTCTCTCTT+TGG | + | chr4_1:78409886-78409905 | None:intergenic | 35.0% | |
| ACCAAAAAAGATTGACAGAC+AGG | - | chr4_1:78409939-78409958 | Msa0574730:intron | 35.0% | |
| !!! | ACCTGTCTGTCAATCTTTTT+TGG | + | chr4_1:78409943-78409962 | None:intergenic | 35.0% |
| AGTTAGACACTGAAACAGAT+TGG | + | chr4_1:78410079-78410098 | None:intergenic | 35.0% | |
| !! | TTTTGCACAGTTTGAGACTA+GGG | - | chr4_1:78410257-78410276 | Msa0574730:intron | 35.0% |
| TGTTGGGAAGTAATTGTGTA+GGG | - | chr4_1:78410340-78410359 | Msa0574730:intron | 35.0% | |
| TTACTTGATAGGATTGTGGA+TGG | + | chr4_1:78410477-78410496 | None:intergenic | 35.0% | |
| TCCACAATCCTATCAAGTAA+AGG | - | chr4_1:78410477-78410496 | Msa0574730:intron | 35.0% | |
| ACCTTTACTTGATAGGATTG+TGG | + | chr4_1:78410481-78410500 | None:intergenic | 35.0% | |
| CTACTAAGCTGAAGAAGTTA+TGG | - | chr4_1:78410511-78410530 | Msa0574730:intron | 35.0% | |
| CCATAAACAAAGTATACCCT+TGG | + | chr4_1:78410635-78410654 | None:intergenic | 35.0% | |
| ! | CCAAGGGTATACTTTGTTTA+TGG | - | chr4_1:78410632-78410651 | Msa0574730:intron | 35.0% |
| ! | AATTTACCTCTTTCAGGTGA+AGG | - | chr4_1:78411042-78411061 | Msa0574730:CDS | 35.0% |
| !! | GAATGGATTAGAGCATTTGT+CGG | - | chr4_1:78411463-78411482 | Msa0574730:CDS | 35.0% |
| ACAGTAAGACACTAACACTT+GGG | + | chr4_1:78411499-78411518 | None:intergenic | 35.0% | |
| AACAGTAAGACACTAACACT+TGG | + | chr4_1:78411500-78411519 | None:intergenic | 35.0% | |
| TCTTACTGTTTATTCCGAGT+TGG | - | chr4_1:78411510-78411529 | Msa0574730:CDS | 35.0% | |
| CACAAACTGCATTATCAACA+TGG | + | chr4_1:78411559-78411578 | None:intergenic | 35.0% | |
| !! | ACAACAGAATCTGTTTCTAG+GGG | + | chr4_1:78411735-78411754 | None:intergenic | 35.0% |
| !!! | ACAGATTCTGTTGTTTTCAC+CGG | - | chr4_1:78411741-78411760 | Msa0574730:CDS | 35.0% |
| !!! | CAGCAATTCATTTTTGAGAC+CGG | + | chr4_1:78411763-78411782 | None:intergenic | 35.0% |
| ATCAGTGAACCACTTGTAAA+TGG | - | chr4_1:78411786-78411805 | Msa0574730:CDS | 35.0% | |
| !!! | CTCTTTTTTTCCCCCTTAAA+TGG | - | chr4_1:78411867-78411886 | Msa0574730:CDS | 35.0% |
| !!! | TTTTTTTCCCCCTTAAATGG+TGG | - | chr4_1:78411870-78411889 | Msa0574730:CDS | 35.0% |
| !!! | TTTTTTCCCCCTTAAATGGT+GGG | - | chr4_1:78411871-78411890 | Msa0574730:CDS | 35.0% |
| TCTATATCCCCACCATTTAA+GGG | + | chr4_1:78411882-78411901 | None:intergenic | 35.0% | |
| ATCTATATCCCCACCATTTA+AGG | + | chr4_1:78411883-78411902 | None:intergenic | 35.0% | |
| GTGGGGATATAGATACAATT+CGG | - | chr4_1:78411889-78411908 | Msa0574730:CDS | 35.0% | |
| TCATGAATGTAGGTAGGAAT+TGG | + | chr4_1:78412003-78412022 | None:intergenic | 35.0% | |
| AATTCCTACCTACATTCATG+AGG | - | chr4_1:78412002-78412021 | Msa0574730:five_prime_UTR | 35.0% | |
| CCAGAAGAAGAAGAAGTGAA+AGG | + | chr4_1:78409142-78409161 | None:intergenic | 40.0% | |
| CCTTTCACTTCTTCTTCTTC+TGG | - | chr4_1:78409139-78409158 | Msa0574730:three_prime_UTR | 40.0% | |
| TCTGGTAAATTCAAAGGCCA+AGG | - | chr4_1:78409157-78409176 | Msa0574730:three_prime_UTR | 40.0% | |
| ! | TAGGTTTGGGTTTGGGATTA+GGG | + | chr4_1:78409267-78409286 | None:intergenic | 40.0% |
| ! | TTGCTTTGATCTGAAGCGAT+CGG | + | chr4_1:78409295-78409314 | None:intergenic | 40.0% |
| AAATGGATCAAAGCCATCTG+CGG | + | chr4_1:78409338-78409357 | None:intergenic | 40.0% | |
| CCGACAGCTTCTTTAATCTT+TGG | + | chr4_1:78409703-78409722 | None:intergenic | 40.0% | |
| ! | TGTGTTGTTGGAACCACAAT+TGG | - | chr4_1:78409849-78409868 | Msa0574730:CDS | 40.0% |
| ! | GGAGTATCTTGAACCAATTG+TGG | + | chr4_1:78409865-78409884 | None:intergenic | 40.0% |
| !!! | AATCTTTTTTGGTTCGGCCT+CGG | + | chr4_1:78409932-78409951 | None:intergenic | 40.0% |
| !! | GTTTTGCACAGTTTGAGACT+AGG | - | chr4_1:78410256-78410275 | Msa0574730:intron | 40.0% |
| GAGACTAGGGCTTGAATATT+TGG | - | chr4_1:78410270-78410289 | Msa0574730:intron | 40.0% | |
| TAGAGGGGAAAAGTAAACTG+TGG | - | chr4_1:78410313-78410332 | Msa0574730:intron | 40.0% | |
| AGAGGGGAAAAGTAAACTGT+GGG | - | chr4_1:78410314-78410333 | Msa0574730:intron | 40.0% | |
| AAGTAAACTGTGGGTTCTGT+TGG | - | chr4_1:78410323-78410342 | Msa0574730:intron | 40.0% | |
| AGTAAACTGTGGGTTCTGTT+GGG | - | chr4_1:78410324-78410343 | Msa0574730:intron | 40.0% | |
| CTGTTGGGAAGTAATTGTGT+AGG | - | chr4_1:78410339-78410358 | Msa0574730:intron | 40.0% | |
| AGCTTATGAAAACAGGGTCA+TGG | + | chr4_1:78410705-78410724 | None:intergenic | 40.0% | |
| TAATGACACACATGCTCTGT+GGG | + | chr4_1:78410945-78410964 | None:intergenic | 40.0% | |
| TTAATGACACACATGCTCTG+TGG | + | chr4_1:78410946-78410965 | None:intergenic | 40.0% | |
| GAACGTTTGTAGAAGGAATC+TGG | + | chr4_1:78411112-78411131 | None:intergenic | 40.0% | |
| TTCAGCTGAACGTTTGTAGA+AGG | + | chr4_1:78411119-78411138 | None:intergenic | 40.0% | |
| TCAGATGGAGTTGTACTTCA+AGG | - | chr4_1:78411274-78411293 | Msa0574730:CDS | 40.0% | |
| TTCAAGGTGTATTTGCTCCA+TGG | - | chr4_1:78411290-78411309 | Msa0574730:CDS | 40.0% | |
| TCAAGGTGTATTTGCTCCAT+GGG | - | chr4_1:78411291-78411310 | Msa0574730:CDS | 40.0% | |
| ! | GGGGAACTTTTATGTCAGAA+CGG | + | chr4_1:78411393-78411412 | None:intergenic | 40.0% |
| TGCATCCTGTAGTTGTTCAA+CGG | - | chr4_1:78411619-78411638 | Msa0574730:CDS | 40.0% | |
| GCAAAAAGCCAAAACGATAG+AGG | - | chr4_1:78411671-78411690 | Msa0574730:CDS | 40.0% | |
| ! | GTCTTCTTCCTCTATCGTTT+TGG | + | chr4_1:78411682-78411701 | None:intergenic | 40.0% |
| TTGAACTTGATTAGGGCAGA+AGG | + | chr4_1:78411711-78411730 | None:intergenic | 40.0% | |
| TAGGGGCTTGAACTTGATTA+GGG | + | chr4_1:78411718-78411737 | None:intergenic | 40.0% | |
| CGGTCTCAAAAATGAATTGC+TGG | - | chr4_1:78411761-78411780 | Msa0574730:CDS | 40.0% | |
| ! | TTTTTCCCCCTTAAATGGTG+GGG | - | chr4_1:78411872-78411891 | Msa0574730:CDS | 40.0% |
| TATATCCCCACCATTTAAGG+GGG | + | chr4_1:78411880-78411899 | None:intergenic | 40.0% | |
| CTATATCCCCACCATTTAAG+GGG | + | chr4_1:78411881-78411900 | None:intergenic | 40.0% | |
| ATTGCCTCATGAATGTAGGT+AGG | + | chr4_1:78412009-78412028 | None:intergenic | 40.0% | |
| !! | TTGGGATTAGGGTTCTGAGA+AGG | + | chr4_1:78409256-78409275 | None:intergenic | 45.0% |
| ! | GTAGGTTTGGGTTTGGGATT+AGG | + | chr4_1:78409268-78409287 | None:intergenic | 45.0% |
| AATGGATCAAAGCCATCTGC+GGG | + | chr4_1:78409337-78409356 | None:intergenic | 45.0% | |
| TAAACAACCCTTTCGATCCG+AGG | - | chr4_1:78409429-78409448 | Msa0574730:intron | 45.0% | |
| ATATCAACCGAACCTTCGGA+CGG | + | chr4_1:78409607-78409626 | None:intergenic | 45.0% | |
| AAGAGGAGAATGGAGAGACA+TGG | - | chr4_1:78409773-78409792 | Msa0574730:CDS | 45.0% | |
| AGAGGAGAATGGAGAGACAT+GGG | - | chr4_1:78409774-78409793 | Msa0574730:CDS | 45.0% | |
| ATTCATGGAGGTTCCTATCG+AGG | - | chr4_1:78409798-78409817 | Msa0574730:CDS | 45.0% | |
| GGGAAGTAATTGTGTAGGGT+TGG | - | chr4_1:78410344-78410363 | Msa0574730:intron | 45.0% | |
| AAGCACTTGTGAGACTGTTC+GGG | + | chr4_1:78410808-78410827 | None:intergenic | 45.0% | |
| CAAGCACTTGTGAGACTGTT+CGG | + | chr4_1:78410809-78410828 | None:intergenic | 45.0% | |
| AGAAGACCTTCACCTGAAAG+AGG | + | chr4_1:78411051-78411070 | None:intergenic | 45.0% | |
| CTACAAACGTTCAGCTGAAG+AGG | - | chr4_1:78411120-78411139 | Msa0574730:CDS | 45.0% | |
| ACCAACTACTGCTCTGTATG+AGG | - | chr4_1:78411315-78411334 | Msa0574730:CDS | 45.0% | |
| ACCTCATACAGAGCAGTAGT+TGG | + | chr4_1:78411319-78411338 | None:intergenic | 45.0% | |
| ACAATGCTGAGTTGCCAACT+CGG | + | chr4_1:78411527-78411546 | None:intergenic | 45.0% | |
| ATCCCATGTTTCCCAAAAGC+AGG | - | chr4_1:78411648-78411667 | Msa0574730:CDS | 45.0% | |
| TCCCATGTTTCCCAAAAGCA+GGG | - | chr4_1:78411649-78411668 | Msa0574730:CDS | 45.0% | |
| !! | TGGCTTTTTGCCCTGCTTTT+GGG | + | chr4_1:78411662-78411681 | None:intergenic | 45.0% |
| !! | TTGGCTTTTTGCCCTGCTTT+TGG | + | chr4_1:78411663-78411682 | None:intergenic | 45.0% |
| AACGATAGAGGAAGAAGACC+TGG | - | chr4_1:78411683-78411702 | Msa0574730:CDS | 45.0% | |
| CTAGGGGCTTGAACTTGATT+AGG | + | chr4_1:78411719-78411738 | None:intergenic | 45.0% | |
| AAAGGCCAAGGTCGAGTCTT+GGG | - | chr4_1:78409169-78409188 | Msa0574730:three_prime_UTR | 50.0% | |
| AAGAACCCAAGACTCGACCT+TGG | + | chr4_1:78409177-78409196 | None:intergenic | 50.0% | |
| GGGGTAGGAATGGAATTTGC+AGG | + | chr4_1:78409223-78409242 | None:intergenic | 50.0% | |
| !! | TAGGGTTCTGAGAAGGACGA+GGG | + | chr4_1:78409249-78409268 | None:intergenic | 50.0% |
| !! | TTAGGGTTCTGAGAAGGACG+AGG | + | chr4_1:78409250-78409269 | None:intergenic | 50.0% |
| ! | GGTGGAGTAGGTTTGGGTTT+GGG | + | chr4_1:78409274-78409293 | None:intergenic | 50.0% |
| ! | CTTTGATCTGAAGCGATCGG+TGG | + | chr4_1:78409292-78409311 | None:intergenic | 50.0% |
| GTGTTCAGAAACCTCGTCCT+CGG | + | chr4_1:78409449-78409468 | None:intergenic | 50.0% | |
| GATTAAAGAAGCTGTCGGCG+AGG | - | chr4_1:78409705-78409724 | Msa0574730:CDS | 50.0% | |
| TGGAGAGACATGGGCATTCA+TGG | - | chr4_1:78409783-78409802 | Msa0574730:CDS | 50.0% | |
| AGAGACATGGGCATTCATGG+AGG | - | chr4_1:78409786-78409805 | Msa0574730:CDS | 50.0% | |
| ACTTTCTCAGCGGAAACGGT+AGG | + | chr4_1:78409907-78409926 | None:intergenic | 50.0% | |
| ! | GGCTACTTTCTCAGCGGAAA+CGG | + | chr4_1:78409911-78409930 | None:intergenic | 50.0% |
| ! | AGAGCAGTAGTTGGTTCCCA+TGG | + | chr4_1:78411310-78411329 | None:intergenic | 50.0% |
| ACACGCCGTTGAACAACTAC+AGG | + | chr4_1:78411627-78411646 | None:intergenic | 50.0% | |
| !! | GCCCTGCTTTTGGGAAACAT+GGG | + | chr4_1:78411653-78411672 | None:intergenic | 50.0% |
| !! | TGCCCTGCTTTTGGGAAACA+TGG | + | chr4_1:78411654-78411673 | None:intergenic | 50.0% |
| CAAAGGCCAAGGTCGAGTCT+TGG | - | chr4_1:78409168-78409187 | Msa0574730:three_prime_UTR | 55.0% | |
| TCTGAGAAGGACGAGGGGTA+GGG | + | chr4_1:78409243-78409262 | None:intergenic | 55.0% | |
| ! | TTCTGAGAAGGACGAGGGGT+AGG | + | chr4_1:78409244-78409263 | None:intergenic | 55.0% |
| !! | AGGGTTCTGAGAAGGACGAG+GGG | + | chr4_1:78409248-78409267 | None:intergenic | 55.0% |
| ! | CGGTGGAGTAGGTTTGGGTT+TGG | + | chr4_1:78409275-78409294 | None:intergenic | 55.0% |
| GCGATCGGTGGAGTAGGTTT+GGG | + | chr4_1:78409280-78409299 | None:intergenic | 55.0% | |
| AGCGATCGGTGGAGTAGGTT+TGG | + | chr4_1:78409281-78409300 | None:intergenic | 55.0% | |
| ! | TCTGAAGCGATCGGTGGAGT+AGG | + | chr4_1:78409286-78409305 | None:intergenic | 55.0% |
| AAACCACGCAAACCCGCAGA+TGG | - | chr4_1:78409322-78409341 | Msa0574730:CDS | 55.0% | |
| ACCTCGTCCTCGGATCGAAA+GGG | + | chr4_1:78409439-78409458 | None:intergenic | 55.0% | |
| AACCTCGTCCTCGGATCGAA+AGG | + | chr4_1:78409440-78409459 | None:intergenic | 55.0% | |
| GGACGAGGTTTCTGAACACG+TGG | - | chr4_1:78409450-78409469 | Msa0574730:intron | 55.0% | |
| GTTTCAGGGAATCCGTCCGA+AGG | - | chr4_1:78409592-78409611 | Msa0574730:intron | 55.0% | |
| AGGGAATCCGTCCGAAGGTT+CGG | - | chr4_1:78409597-78409616 | Msa0574730:intron | 55.0% | |
| GAAGCTGTCGGCGAGGTTAT+TGG | - | chr4_1:78409712-78409731 | Msa0574730:CDS | 55.0% | |
| TTCCGCTGAGAAAGTAGCCG+AGG | - | chr4_1:78409912-78409931 | Msa0574730:CDS | 55.0% | |
| !! | TGATTAGGGCAGAAGGCACC+AGG | + | chr4_1:78411704-78411723 | None:intergenic | 55.0% |
| ACGAGGGGTAGGGGTAGGAA+TGG | + | chr4_1:78409233-78409252 | None:intergenic | 60.0% | |
| CTGAGAAGGACGAGGGGTAG+GGG | + | chr4_1:78409242-78409261 | None:intergenic | 60.0% | |
| AAGCCATCTGCGGGTTTGCG+TGG | + | chr4_1:78409328-78409347 | None:intergenic | 60.0% | |
| ACCCTTTCGATCCGAGGACG+AGG | - | chr4_1:78409435-78409454 | Msa0574730:intron | 60.0% | |
| GCTGTCGGCGAGGTTATTGG+TGG | - | chr4_1:78409715-78409734 | Msa0574730:CDS | 60.0% | |
| ! | GGCCTCGGCTACTTTCTCAG+CGG | + | chr4_1:78409917-78409936 | None:intergenic | 60.0% |
| GAAGGACGAGGGGTAGGGGT+AGG | + | chr4_1:78409238-78409257 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 78408972 | 78412030 | 78408972 | ID=Msa0574730;Name=Msa0574730 |
| chr4_1 | mRNA | 78408972 | 78412030 | 78408972 | ID=Msa0574730-mRNA-1;Parent=Msa0574730;Name=Msa0574730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=116|1|1|1|1|1|3|218|463 |
| chr4_1 | exon | 78408972 | 78409429 | 78408972 | ID=Msa0574730-mRNA-1:exon:27816;Parent=Msa0574730-mRNA-1 |
| chr4_1 | exon | 78409666 | 78409944 | 78409666 | ID=Msa0574730-mRNA-1:exon:27815;Parent=Msa0574730-mRNA-1 |
| chr4_1 | exon | 78411042 | 78412030 | 78411042 | ID=Msa0574730-mRNA-1:exon:27814;Parent=Msa0574730-mRNA-1 |
| chr4_1 | five_prime_UTR | 78411915 | 78412030 | 78411915 | ID=Msa0574730-mRNA-1:five_prime_utr;Parent=Msa0574730-mRNA-1 |
| chr4_1 | CDS | 78411042 | 78411914 | 78411042 | ID=Msa0574730-mRNA-1:cds;Parent=Msa0574730-mRNA-1 |
| chr4_1 | CDS | 78409666 | 78409944 | 78409666 | ID=Msa0574730-mRNA-1:cds;Parent=Msa0574730-mRNA-1 |
| chr4_1 | CDS | 78409190 | 78409429 | 78409190 | ID=Msa0574730-mRNA-1:cds;Parent=Msa0574730-mRNA-1 |
| chr4_1 | three_prime_UTR | 78408972 | 78409189 | 78408972 | ID=Msa0574730-mRNA-1:three_prime_utr;Parent=Msa0574730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
