AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0876150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876150 MtrunA17_Chr6g0457251 90.824 425 32 2 1 423 1 420 0.0 775
Msa0876150 MtrunA17_Chr2g0318441 31.646 158 107 1 204 361 144 300 7.81e-15 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0876150 AT5G38510.2 44.444 423 180 12 1 412 51 429 3.04e-110 331
Msa0876150 AT5G38510.3 44.444 423 180 12 1 412 51 429 3.04e-110 331
Msa0876150 AT5G38510.1 44.444 423 180 12 1 412 51 429 3.04e-110 331
Msa0876150 AT1G25290.2 28.125 192 122 4 173 361 132 310 1.50e-16 80.9
Msa0876150 AT1G25290.1 27.638 199 121 5 173 361 132 317 4.60e-15 76.6
Msa0876150 AT1G12750.4 29.940 167 107 4 216 381 96 253 3.48e-12 67.4
Msa0876150 AT1G12750.7 29.940 167 107 4 216 381 96 253 3.48e-12 67.4
Msa0876150 AT1G12750.6 29.940 167 107 4 216 381 96 253 3.48e-12 67.4
Msa0876150 AT1G12750.3 29.940 167 107 4 216 381 96 253 3.48e-12 67.4
Msa0876150 AT1G12750.1 29.940 167 107 4 216 381 96 253 3.48e-12 67.4
Msa0876150 AT1G63120.1 32.374 139 81 3 218 350 111 242 8.15e-11 63.5

Find 86 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGATCGTTAGATTCTTATTT+TGG 0.099340 6_1:-13946802 Msa0876150:CDS
TACATACTTGGTGGAGTTTC+TGG 0.113845 6_1:-13945059 Msa0876150:CDS
AGAAACTTTAGTGCAAATTT+TGG 0.184985 6_1:-13947417 Msa0876150:intron
GCTTATAACACCAATGTTTC+TGG 0.197615 6_1:-13945660 Msa0876150:intron
GATATTGCAGCTCTTAAATT+AGG 0.215345 6_1:-13947344 Msa0876150:intron
TCTAAGTTATCATTCCTTAT+AGG 0.220572 6_1:+13945752 None:intergenic
GAGCTGCAATATCATTATTC+TGG 0.240248 6_1:+13947354 None:intergenic
TGTTGGGCCCTTGTATCATT+TGG 0.251678 6_1:-13945128 Msa0876150:CDS
AGAAGAATAAAAGGTGTTAA+TGG 0.303158 6_1:-13946227 Msa0876150:CDS
AAGAACACATGCATAATTCT+TGG 0.314969 6_1:-13946904 Msa0876150:CDS
GTGAATATAAGAAGAATAAA+AGG 0.316724 6_1:-13946236 Msa0876150:CDS
GTTGGGCCCTTGTATCATTT+GGG 0.328782 6_1:-13945127 Msa0876150:CDS
TTGAAATAGCAAGTCCTATA+AGG 0.329116 6_1:-13945766 Msa0876150:CDS
TCTTCTGTCTATGTTGGAAT+TGG 0.344287 6_1:-13947493 Msa0876150:intron
TTCACATGGCTCTGAGTTGT+TGG 0.358549 6_1:-13945145 Msa0876150:CDS
TATTTGGTGCAGTGGTATAT+TGG 0.361271 6_1:-13945816 Msa0876150:intron
ACTTAAAGCAACGACGAATA+TGG 0.369039 6_1:+13944146 None:intergenic
GCAATAATTATTACAGCTCT+TGG 0.373294 6_1:-13944498 Msa0876150:CDS
AAGATGCCACAAGAGATTCT+TGG 0.377102 6_1:+13946351 None:intergenic
TATCTTGGCAAACTAAATAA+TGG 0.383765 6_1:-13946664 Msa0876150:intron
AATTTGTTCTTTGAGTATCT+TGG 0.388326 6_1:+13946279 None:intergenic
TCACATGGCTCTGAGTTGTT+GGG 0.398292 6_1:-13945144 Msa0876150:CDS
AGTCCTTCTCCACCGGTGCC+TGG 0.411110 6_1:+13944219 None:intergenic
CTGAAACTTGTTACAAAATA+CGG 0.414309 6_1:-13944198 Msa0876150:CDS
ATTCAGATTGACCATTTCCT+TGG 0.415293 6_1:+13946716 None:intergenic
ATATGGCTTTCTAACTAGTT+CGG 0.422427 6_1:-13944265 Msa0876150:CDS
GCTTTCACAGGCATGGCATA+TGG 0.423692 6_1:-13944282 Msa0876150:CDS
CAATCTTCTTCTGTCTATGT+TGG 0.437347 6_1:-13947499 Msa0876150:five_prime_UTR
CATTTGCAATACTTGGTGCT+TGG 0.441463 6_1:-13944587 Msa0876150:CDS
AACTAGTTCGGCTCTTCAGC+AGG 0.444008 6_1:-13944253 Msa0876150:CDS
GAGTCTCTTGATGAGTATCT+TGG 0.444739 6_1:-13946679 Msa0876150:CDS
GGACCTGCATTTGCAATACT+TGG 0.446406 6_1:-13944594 Msa0876150:CDS
CATACATACCACTCATCAAT+TGG 0.455437 6_1:+13944453 None:intergenic
GGTTTCATATTATGCAACCT+TGG 0.469478 6_1:-13944477 Msa0876150:CDS
ATTATGCATGTGTTCTTGTA+AGG 0.479821 6_1:+13946910 None:intergenic
TCTTGGCTGAGAATTTGTTT+CGG 0.481782 6_1:+13946296 None:intergenic
ATGAATGTGGACCAAGGAAA+TGG 0.484951 6_1:-13946727 Msa0876150:CDS
TTCTTGATCTACATACTTGG+TGG 0.485241 6_1:-13945068 Msa0876150:CDS
CAATCTTGTACCAGAAACAT+TGG 0.503254 6_1:+13945650 None:intergenic
ATTCTCCGACCATGATCAAA+TGG 0.504707 6_1:+13945690 None:intergenic
TGAAGTAGCTGTTGTAGCCT+TGG 0.504938 6_1:-13944073 Msa0876150:CDS
CATCGCCTCATTTGATGCAT+CGG 0.508402 6_1:+13946747 None:intergenic
CCTCAAGTTTGCAAAGGCTA+TGG 0.508897 6_1:-13945104 Msa0876150:CDS
CTTGAGGCCCAAATGATACA+AGG 0.512714 6_1:+13945120 None:intergenic
CAGCAGGACGCGACATCACC+AGG 0.516129 6_1:-13944237 Msa0876150:CDS
CACTCGGGAGCAGCTTTCAC+AGG 0.520814 6_1:-13944294 Msa0876150:CDS
AAAGATAAACCATTTGATCA+TGG 0.528886 6_1:-13945699 Msa0876150:CDS
ATCTTTGCTCCGTATAACAT+TGG 0.531452 6_1:+13945716 None:intergenic
GTGCCACCAACAGTTGGATC+TGG 0.531605 6_1:+13945011 None:intergenic
ATTTGATCATGGTCGGAGAA+TGG 0.535242 6_1:-13945688 Msa0876150:CDS
TCACCAGGCACCGGTGGAGA+AGG 0.543383 6_1:-13944222 Msa0876150:CDS
AAGTTTCAGTCCTTCTCCAC+CGG 0.554816 6_1:+13944212 None:intergenic
AAATCTGAATGGAGAAAGGG+TGG 0.555879 6_1:-13943882 Msa0876150:three_prime_UTR
ATTCATTTGTAGGTCACACT+CGG 0.558948 6_1:-13944310 Msa0876150:intron
GCACCAAGTATTGCAAATGC+AGG 0.566312 6_1:+13944591 None:intergenic
GGGAGCAGCTTTCACAGGCA+TGG 0.568886 6_1:-13944289 Msa0876150:CDS
AGAAGGAACTTATCAACCCA+TGG 0.570065 6_1:-13943929 Msa0876150:three_prime_UTR
AATCTAATTCATCTAACCAT+GGG 0.572132 6_1:+13943913 None:intergenic
TTCTGACAATCTATTCAAGA+AGG 0.575053 6_1:-13944520 Msa0876150:CDS
AAATCTAATTCATCTAACCA+TGG 0.580068 6_1:+13943912 None:intergenic
ACACCAGATCCAACTGTTGG+TGG 0.580925 6_1:-13945014 Msa0876150:CDS
CTTACAGTGCCACCAACAGT+TGG 0.582461 6_1:+13945005 None:intergenic
GCGACATCACCAGGCACCGG+TGG 0.583314 6_1:-13944228 Msa0876150:CDS
CAGATGCCAATGCATTGAGA+GGG 0.584447 6_1:+13944100 None:intergenic
TTTGGGCCTCAAGTTTGCAA+AGG 0.592340 6_1:-13945110 Msa0876150:CDS
CCATAGCCTTTGCAAACTTG+AGG 0.593757 6_1:+13945104 None:intergenic
ATAAACCATTTGATCATGGT+CGG 0.597905 6_1:-13945695 Msa0876150:CDS
TGTTTCCGATGCATCAAATG+AGG 0.598961 6_1:-13946752 Msa0876150:CDS
ACAGATGCCAATGCATTGAG+AGG 0.600042 6_1:+13944099 None:intergenic
TCATGGTCGGAGAATGGTGG+AGG 0.602228 6_1:-13945682 Msa0876150:CDS
AAGTATTGACATATATTCCA+AGG 0.610798 6_1:+13944056 None:intergenic
TTCATTTGTAGGTCACACTC+GGG 0.616886 6_1:-13944309 Msa0876150:intron
ATATTGGCATCAGTGAACAT+TGG 0.618895 6_1:-13945800 Msa0876150:CDS
TCGTAGTTTCTTCTCAGCAG+AGG 0.623717 6_1:+13946822 None:intergenic
GACGCGACATCACCAGGCAC+CGG 0.637431 6_1:-13944231 Msa0876150:CDS
CATACACCAGATCCAACTGT+TGG 0.642520 6_1:-13945017 Msa0876150:CDS
TGATCATGGTCGGAGAATGG+TGG 0.646055 6_1:-13945685 Msa0876150:CDS
ATCAAATGAGGCGATGAATG+TGG 0.662880 6_1:-13946740 Msa0876150:CDS
ACCTTGGTCCAATTGATGAG+TGG 0.663630 6_1:-13944461 Msa0876150:intron
TTGAGGCCCAAATGATACAA+GGG 0.665598 6_1:+13945121 None:intergenic
GATGCCAATGCATTGAGAGG+GGG 0.668617 6_1:+13944102 None:intergenic
CATAAACCAAGAATCTCTTG+TGG 0.669264 6_1:-13946357 Msa0876150:CDS
AGATGCCAATGCATTGAGAG+GGG 0.670513 6_1:+13944101 None:intergenic
GCATGCAGGAATATTTCACA+TGG 0.672691 6_1:-13945159 Msa0876150:CDS
GAGGCGATGAATGTGGACCA+AGG 0.686163 6_1:-13946733 Msa0876150:CDS
ACCACTCATCAATTGGACCA+AGG 0.692729 6_1:+13944460 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAAATATTTATTAT+TGG - chr6_1:13947126-13947145 Msa0876150:intron 0.0%
!!! TTTAAAATGATAAATAAAAG+AGG + chr6_1:13946164-13946183 None:intergenic 10.0%
!! AAAAATGTTATATATACATT+CGG - chr6_1:13947085-13947104 Msa0876150:intron 10.0%
!!! TTTTAAGAAATATAAACACT+GGG + chr6_1:13943898-13943917 None:intergenic 15.0%
!!! ATTTTAAGAAATATAAACAC+TGG + chr6_1:13943899-13943918 None:intergenic 15.0%
!!! AAATACAAATTTTCTATGAA+GGG + chr6_1:13944375-13944394 None:intergenic 15.0%
!!! AAAATACAAATTTTCTATGA+AGG + chr6_1:13944376-13944395 None:intergenic 15.0%
!! AATTTAATTCTTGCAAAATT+TGG + chr6_1:13946670-13946689 None:intergenic 15.0%
!!! AAATTTTATTACATTTAAGG+AGG + chr6_1:13946733-13946752 None:intergenic 15.0%
!! ATAAATATATCTGCAAGATT+TGG - chr6_1:13944148-13944167 Msa0876150:CDS 20.0%
!!! TCAGTAAATACCTTAAATTT+TGG - chr6_1:13944196-13944215 Msa0876150:CDS 20.0%
!! CAAAATACAACCAAAATTTA+AGG + chr6_1:13944209-13944228 None:intergenic 20.0%
!!! CTTAAATTTTGGTTGTATTT+TGG - chr6_1:13944207-13944226 Msa0876150:CDS 20.0%
!! TTTATTCACACTCTAATTTA+AGG + chr6_1:13944257-13944276 None:intergenic 20.0%
!!! ATGTAAGTTTTTTTTTATGC+AGG - chr6_1:13945081-13945100 Msa0876150:CDS 20.0%
!!! ATACTCAAAGAACAAATTTT+AGG - chr6_1:13945187-13945206 Msa0876150:intron 20.0%
!! GTGAATATAAGAAGAATAAA+AGG - chr6_1:13945225-13945244 Msa0876150:intron 20.0%
!! ATGTTACTAGAAAAATTAGA+CGG + chr6_1:13945404-13945423 None:intergenic 20.0%
!! AATTGAGTAAATAGGAAAAT+CGG + chr6_1:13945572-13945591 None:intergenic 20.0%
!! TAGTTTCATGTATATATATG+TGG + chr6_1:13945860-13945879 None:intergenic 20.0%
!! ATCATTTAACTCTATATTTC+TGG - chr6_1:13945907-13945926 Msa0876150:intron 20.0%
!! TAATTCATAGTAAAATCATG+CGG - chr6_1:13946511-13946530 Msa0876150:intron 20.0%
!!! ATTGATCCTATATTTTCATT+AGG - chr6_1:13946687-13946706 Msa0876150:CDS 20.0%
!! AAACTTAAAGACAACAAAAT+AGG + chr6_1:13946827-13946846 None:intergenic 20.0%
!! AGAAACTTTAGTGCAAATTT+TGG - chr6_1:13944044-13944063 Msa0876150:exon 25.0%
!! ATTTAAGGTATTTACTGAAG+AGG + chr6_1:13944194-13944213 None:intergenic 25.0%
!! ATTTAAGGTATTTACTGAAG+AGG + chr6_1:13944194-13944213 None:intergenic 25.0%
!!! TTGATTTGTTCATCAAGTAT+TGG + chr6_1:13944282-13944301 None:intergenic 25.0%
! GCAATATAAATAGCAAGTAA+TGG - chr6_1:13944339-13944358 Msa0876150:intron 25.0%
! TACTTTGTGCAATATTTCTT+TGG - chr6_1:13944408-13944427 Msa0876150:intron 25.0%
! TGAAGAAGAGAAAATAGAAA+AGG + chr6_1:13944494-13944513 None:intergenic 25.0%
!! TTTTCTATTTTCTCTTCTTC+AGG - chr6_1:13944493-13944512 Msa0876150:CDS 25.0%
! TATCTTGGCAAACTAAATAA+TGG - chr6_1:13944797-13944816 Msa0876150:intron 25.0%
!!! GGTAAAGTGTAATTACTTTT+TGG - chr6_1:13944818-13944837 Msa0876150:intron 25.0%
!! GAATATTTACGTTTTGTGTA+TGG - chr6_1:13944890-13944909 Msa0876150:intron 25.0%
! AATTTCTACAACAATTTCGA+TGG + chr6_1:13944950-13944969 None:intergenic 25.0%
!! AATTTGTTCTTTGAGTATCT+TGG + chr6_1:13945185-13945204 None:intergenic 25.0%
!!! AGAAGAATAAAAGGTGTTAA+TGG - chr6_1:13945234-13945253 Msa0876150:intron 25.0%
! AAAAATTAGACGGTGATTAT+CGG + chr6_1:13945394-13945413 None:intergenic 25.0%
! GTAACATTTATAGAGTGAAT+AGG - chr6_1:13945417-13945436 Msa0876150:intron 25.0%
! TATAGAGTGAATAGGTATAT+TGG - chr6_1:13945425-13945444 Msa0876150:intron 25.0%
! ATTGCCAATATACAAAATTC+AGG - chr6_1:13945513-13945532 Msa0876150:intron 25.0%
! TTGCCAATATACAAAATTCA+GGG - chr6_1:13945514-13945533 Msa0876150:intron 25.0%
! TGATAGACAATTGAGTAAAT+AGG + chr6_1:13945580-13945599 None:intergenic 25.0%
! TCCATCTATGTTGTTATATT+TGG - chr6_1:13945629-13945648 Msa0876150:intron 25.0%
! ACCAAATATAACAACATAGA+TGG + chr6_1:13945633-13945652 None:intergenic 25.0%
! TCTAAGTTATCATTCCTTAT+AGG + chr6_1:13945712-13945731 None:intergenic 25.0%
!! TTTTCACTTCCAATGTTATA+CGG - chr6_1:13945736-13945755 Msa0876150:CDS 25.0%
! AAAGATAAACCATTTGATCA+TGG - chr6_1:13945762-13945781 Msa0876150:CDS 25.0%
! TCATGTATATATATGTGGAA+TGG + chr6_1:13945855-13945874 None:intergenic 25.0%
!! TATATTTCTGATTTCTCAGA+TGG + chr6_1:13945963-13945982 None:intergenic 25.0%
!!! TGGTAGATTTTTAAAACAAC+TGG + chr6_1:13946001-13946020 None:intergenic 25.0%
! AACAAAACTAGAAATCAAAC+CGG + chr6_1:13946219-13946238 None:intergenic 25.0%
!! TTTTTCTTGATCTACATACT+TGG - chr6_1:13946390-13946409 Msa0876150:intron 25.0%
!!! TGACATCTCTATTTTGAATT+TGG + chr6_1:13946908-13946927 None:intergenic 25.0%
!! TATGGCTTTACATAATTTAG+AGG - chr6_1:13947027-13947046 Msa0876150:intron 25.0%
!! ATTATTGGTGATTCATTTGT+AGG - chr6_1:13947141-13947160 Msa0876150:intron 25.0%
!!! CTGAAACTTGTTACAAAATA+CGG - chr6_1:13947263-13947282 Msa0876150:intron 25.0%
!!! AAGTATTGACATATATTCCA+AGG + chr6_1:13947408-13947427 None:intergenic 25.0%
! AATCTAATTCATCTAACCAT+GGG + chr6_1:13947551-13947570 None:intergenic 25.0%
! AAATCTAATTCATCTAACCA+TGG + chr6_1:13947552-13947571 None:intergenic 25.0%
! ATTTCCCTAAAAAATCTGAA+TGG - chr6_1:13947568-13947587 Msa0876150:five_prime_UTR 25.0%
!!! TTCTCCATTCAGATTTTTTA+GGG + chr6_1:13947575-13947594 None:intergenic 25.0%
!!! TTTCTCCATTCAGATTTTTT+AGG + chr6_1:13947576-13947595 None:intergenic 25.0%
! TAAAAAATCTGAATGGAGAA+AGG - chr6_1:13947575-13947594 Msa0876150:five_prime_UTR 25.0%
! AAAAAATCTGAATGGAGAAA+GGG - chr6_1:13947576-13947595 Msa0876150:five_prime_UTR 25.0%
GATATTGCAGCTCTTAAATT+AGG - chr6_1:13944117-13944136 Msa0876150:CDS 30.0%
!! TGCAAGATTTGGTTGTATTT+TGG - chr6_1:13944159-13944178 Msa0876150:CDS 30.0%
! TGTACATTTTCAAAGCTTGA+TGG - chr6_1:13944317-13944336 Msa0876150:intron 30.0%
ATTATGCATGTGTTCTTGTA+AGG + chr6_1:13944554-13944573 None:intergenic 30.0%
AAGAACACATGCATAATTCT+TGG - chr6_1:13944557-13944576 Msa0876150:CDS 30.0%
!! CGATCGTTAGATTCTTATTT+TGG - chr6_1:13944659-13944678 Msa0876150:intron 30.0%
!! GATGGTTGATGAATATAACA+AGG + chr6_1:13944932-13944951 None:intergenic 30.0%
! TGAAGTATTTGCTTAATGCA+TGG - chr6_1:13945045-13945064 Msa0876150:CDS 30.0%
! TTTTCAAACTCTACTCTTGT+TGG - chr6_1:13945352-13945371 Msa0876150:intron 30.0%
GATCGATGTTTACAATTTCA+AGG + chr6_1:13945452-13945471 None:intergenic 30.0%
CAATTACATCCCTAAAAATG+TGG + chr6_1:13945497-13945516 None:intergenic 30.0%
TGCCAATATACAAAATTCAG+GGG - chr6_1:13945515-13945534 Msa0876150:intron 30.0%
TTGAAATAGCAAGTCCTATA+AGG - chr6_1:13945695-13945714 Msa0876150:CDS 30.0%
ATAAACCATTTGATCATGGT+CGG - chr6_1:13945766-13945785 Msa0876150:CDS 30.0%
TCTGGTACAAGATTGAAAAT+TGG - chr6_1:13945819-13945838 Msa0876150:intron 30.0%
CTGGTACAAGATTGAAAATT+GGG - chr6_1:13945820-13945839 Msa0876150:intron 30.0%
ACTAGTTAGTATCATCATCT+AGG - chr6_1:13945876-13945895 Msa0876150:intron 30.0%
!! TCTATATTTCTGGTACAAGA+TGG - chr6_1:13945917-13945936 Msa0876150:intron 30.0%
AATCAGAAATATAGTGCATC+AGG - chr6_1:13945970-13945989 Msa0876150:intron 30.0%
TAAAAATCTACCAAACCGAT+CGG - chr6_1:13946008-13946027 Msa0876150:intron 30.0%
AACCAAGATTAATAACTGCA+TGG - chr6_1:13946641-13946660 Msa0876150:intron 30.0%
TTCCATGCAGTTATTAATCT+TGG + chr6_1:13946646-13946665 None:intergenic 30.0%
CAGAGACCTAATGAAAATAT+AGG + chr6_1:13946696-13946715 None:intergenic 30.0%
!!! CTTTTGCAATGTGTTACTTT+CGG - chr6_1:13946796-13946815 Msa0876150:CDS 30.0%
TTCTTTGTCTAACATGAATC+AGG - chr6_1:13946845-13946864 Msa0876150:CDS 30.0%
TCTTTGTCTAACATGAATCA+GGG - chr6_1:13946846-13946865 Msa0876150:CDS 30.0%
TTCTGACAATCTATTCAAGA+AGG - chr6_1:13946941-13946960 Msa0876150:CDS 30.0%
GCAATAATTATTACAGCTCT+TGG - chr6_1:13946963-13946982 Msa0876150:intron 30.0%
ATATGGCTTTCTAACTAGTT+CGG - chr6_1:13947196-13947215 Msa0876150:intron 30.0%
!! AAGTTCACTCCTTTTGTTTA+TGG - chr6_1:13947334-13947353 Msa0876150:intron 30.0%
!! GTTTTTGATGATCTTTGAGA+AGG - chr6_1:13947515-13947534 Msa0876150:five_prime_UTR 30.0%
CAATCTTCTTCTGTCTATGT+TGG - chr6_1:13943962-13943981 Msa0876150:three_prime_UTR 35.0%
TCTTCTGTCTATGTTGGAAT+TGG - chr6_1:13943968-13943987 Msa0876150:three_prime_UTR 35.0%
CTAGAGAAAGCTATCATCAT+TGG - chr6_1:13944005-13944024 Msa0876150:three_prime_UTR 35.0%
GAGCTGCAATATCATTATTC+TGG + chr6_1:13944110-13944129 None:intergenic 35.0%
GCAGCTCTTAAATTAGGAAA+TGG - chr6_1:13944123-13944142 Msa0876150:CDS 35.0%
!! TTCTCTTCTTCAGGTTTTCA+TGG - chr6_1:13944502-13944521 Msa0876150:CDS 35.0%
ATTCAGATTGACCATTTCCT+TGG + chr6_1:13944748-13944767 None:intergenic 35.0%
CATAAACCAAGAATCTCTTG+TGG - chr6_1:13945104-13945123 Msa0876150:CDS 35.0%
! TCTTGGCTGAGAATTTGTTT+CGG + chr6_1:13945168-13945187 None:intergenic 35.0%
! AGCCCCTGAATTTTGTATAT+TGG + chr6_1:13945520-13945539 None:intergenic 35.0%
GACATATGCATACAATTTCG+AGG - chr6_1:13945545-13945564 Msa0876150:intron 35.0%
!! TGTTGTTATATTTGGTGCAG+TGG - chr6_1:13945637-13945656 Msa0876150:intron 35.0%
!! TATTTGGTGCAGTGGTATAT+TGG - chr6_1:13945645-13945664 Msa0876150:intron 35.0%
ATATTGGCATCAGTGAACAT+TGG - chr6_1:13945661-13945680 Msa0876150:CDS 35.0%
ATCTTTGCTCCGTATAACAT+TGG + chr6_1:13945748-13945767 None:intergenic 35.0%
GCTTATAACACCAATGTTTC+TGG - chr6_1:13945801-13945820 Msa0876150:CDS 35.0%
CAATCTTGTACCAGAAACAT+TGG + chr6_1:13945814-13945833 None:intergenic 35.0%
GTTCAATTGAATGAACCGAT+CGG + chr6_1:13946026-13946045 None:intergenic 35.0%
! CGTGTGTTTAATGGTTCTAT+CGG + chr6_1:13946187-13946206 None:intergenic 35.0%
TGAGACTTTCGTGTGTTTAA+TGG + chr6_1:13946196-13946215 None:intergenic 35.0%
! ATTTTTCATATGCAGCATGC+AGG - chr6_1:13946288-13946307 Msa0876150:CDS 35.0%
TTCTTGATCTACATACTTGG+TGG - chr6_1:13946393-13946412 Msa0876150:intron 35.0%
! CTCAGCTGTCAATTTAAGAT+AGG - chr6_1:13946552-13946571 Msa0876150:intron 35.0%
GATAAATGTGTATCGTTAGC+TGG + chr6_1:13946578-13946597 None:intergenic 35.0%
TTATGCAAATGCTGTGTAAG+TGG - chr6_1:13946765-13946784 Msa0876150:CDS 35.0%
GGTTTCATATTATGCAACCT+TGG - chr6_1:13946984-13947003 Msa0876150:intron 35.0%
CATACATACCACTCATCAAT+TGG + chr6_1:13947011-13947030 None:intergenic 35.0%
CAATTGATGAGTGGTATGTA+TGG - chr6_1:13947009-13947028 Msa0876150:intron 35.0%
ATTCATTTGTAGGTCACACT+CGG - chr6_1:13947151-13947170 Msa0876150:intron 35.0%
ACTTAAAGCAACGACGAATA+TGG + chr6_1:13947318-13947337 None:intergenic 35.0%
CTTACCATTACTAGCTGTGT+TGG + chr6_1:13944436-13944455 None:intergenic 40.0%
!! CTGAACACGTATTTTTGTCG+CGG + chr6_1:13944603-13944622 None:intergenic 40.0%
TGTTTCCGATGCATCAAATG+AGG - chr6_1:13944709-13944728 Msa0876150:intron 40.0%
ATCAAATGAGGCGATGAATG+TGG - chr6_1:13944721-13944740 Msa0876150:intron 40.0%
ATGAATGTGGACCAAGGAAA+TGG - chr6_1:13944734-13944753 Msa0876150:intron 40.0%
GAGTCTCTTGATGAGTATCT+TGG - chr6_1:13944782-13944801 Msa0876150:intron 40.0%
! CGATTTTATGCGTCATTTGC+AGG + chr6_1:13944869-13944888 None:intergenic 40.0%
AAGATGCCACAAGAGATTCT+TGG + chr6_1:13945113-13945132 None:intergenic 40.0%
!! AAAATGTGGTGTCGGTCAAA+CGG + chr6_1:13945483-13945502 None:intergenic 40.0%
! TTGACCGACACCACATTTTT+AGG - chr6_1:13945484-13945503 Msa0876150:intron 40.0%
! TGACCGACACCACATTTTTA+GGG - chr6_1:13945485-13945504 Msa0876150:intron 40.0%
CATCCCTAAAAATGTGGTGT+CGG + chr6_1:13945491-13945510 None:intergenic 40.0%
ATTCTCCGACCATGATCAAA+TGG + chr6_1:13945774-13945793 None:intergenic 40.0%
ATTTGATCATGGTCGGAGAA+TGG - chr6_1:13945773-13945792 Msa0876150:CDS 40.0%
ATTGAATGAACCGATCGGTT+TGG + chr6_1:13946021-13946040 None:intergenic 40.0%
ATTCAATTGAACCGAGAACC+AGG - chr6_1:13946034-13946053 Msa0876150:intron 40.0%
AAACCATCCGATTAATGACC+TGG + chr6_1:13946055-13946074 None:intergenic 40.0%
TTAATCGGATGGTTTCATGC+CGG - chr6_1:13946060-13946079 Msa0876150:intron 40.0%
TAAACACACGAAAGTCTCAC+CGG - chr6_1:13946197-13946216 Msa0876150:CDS 40.0%
GCATGCAGGAATATTTCACA+TGG - chr6_1:13946302-13946321 Msa0876150:CDS 40.0%
TTGAGGCCCAAATGATACAA+GGG + chr6_1:13946343-13946362 None:intergenic 40.0%
! TACATACTTGGTGGAGTTTC+TGG - chr6_1:13946402-13946421 Msa0876150:intron 40.0%
!! CATTTGCAATACTTGGTGCT+TGG - chr6_1:13946874-13946893 Msa0876150:CDS 40.0%
TTCATTTGTAGGTCACACTC+GGG - chr6_1:13947152-13947171 Msa0876150:intron 40.0%
AGAAGGAACTTATCAACCCA+TGG - chr6_1:13947532-13947551 Msa0876150:five_prime_UTR 40.0%
GGTACCAACACAGCTAGTAA+TGG - chr6_1:13944429-13944448 Msa0876150:intron 45.0%
TCGTAGTTTCTTCTCAGCAG+AGG + chr6_1:13944642-13944661 None:intergenic 45.0%
CATCGCCTCATTTGATGCAT+CGG + chr6_1:13944717-13944736 None:intergenic 45.0%
AACTCTACTCTTGTTGGCAG+TGG - chr6_1:13945358-13945377 Msa0876150:intron 45.0%
! CCGATTAATGACCTGGTTCT+CGG + chr6_1:13946048-13946067 None:intergenic 45.0%
CCGAGAACCAGGTCATTAAT+CGG - chr6_1:13946045-13946064 Msa0876150:intron 45.0%
GAACCAGGTCATTAATCGGA+TGG - chr6_1:13946049-13946068 Msa0876150:intron 45.0%
GGTTGAACTAGAGTTAGGCA+GGG - chr6_1:13946097-13946116 Msa0876150:intron 45.0%
!! TTCACATGGCTCTGAGTTGT+TGG - chr6_1:13946316-13946335 Msa0876150:CDS 45.0%
!! TCACATGGCTCTGAGTTGTT+GGG - chr6_1:13946317-13946336 Msa0876150:CDS 45.0%
TGTTGGGCCCTTGTATCATT+TGG - chr6_1:13946333-13946352 Msa0876150:CDS 45.0%
GTTGGGCCCTTGTATCATTT+GGG - chr6_1:13946334-13946353 Msa0876150:CDS 45.0%
CTTGAGGCCCAAATGATACA+AGG + chr6_1:13946344-13946363 None:intergenic 45.0%
TTTGGGCCTCAAGTTTGCAA+AGG - chr6_1:13946351-13946370 Msa0876150:CDS 45.0%
CCATAGCCTTTGCAAACTTG+AGG + chr6_1:13946360-13946379 None:intergenic 45.0%
CCTCAAGTTTGCAAAGGCTA+TGG - chr6_1:13946357-13946376 Msa0876150:CDS 45.0%
CATACACCAGATCCAACTGT+TGG - chr6_1:13946444-13946463 Msa0876150:intron 45.0%
GGACCTGCATTTGCAATACT+TGG - chr6_1:13946867-13946886 Msa0876150:CDS 45.0%
! GCACCAAGTATTGCAAATGC+AGG + chr6_1:13946873-13946892 None:intergenic 45.0%
ACCTTGGTCCAATTGATGAG+TGG - chr6_1:13947000-13947019 Msa0876150:intron 45.0%
ACCACTCATCAATTGGACCA+AGG + chr6_1:13947004-13947023 None:intergenic 45.0%
AAGTTTCAGTCCTTCTCCAC+CGG + chr6_1:13947252-13947271 None:intergenic 45.0%
GAGGGGGATCCATAAACAAA+AGG + chr6_1:13947346-13947365 None:intergenic 45.0%
AGATGCCAATGCATTGAGAG+GGG + chr6_1:13947363-13947382 None:intergenic 45.0%
CAGATGCCAATGCATTGAGA+GGG + chr6_1:13947364-13947383 None:intergenic 45.0%
ACAGATGCCAATGCATTGAG+AGG + chr6_1:13947365-13947384 None:intergenic 45.0%
TGAAGTAGCTGTTGTAGCCT+TGG - chr6_1:13947388-13947407 Msa0876150:five_prime_UTR 45.0%
!!! TAAAAATTTTATTACATTTA+AGG + chr6_1:13946736-13946755 None:intergenic 5.0%
TCTACTCTTGTTGGCAGTGG+CGG - chr6_1:13945361-13945380 Msa0876150:intron 50.0%
TGATCATGGTCGGAGAATGG+TGG - chr6_1:13945776-13945795 Msa0876150:CDS 50.0%
! CATGCCGGTTACATTGTGCT+CGG - chr6_1:13946075-13946094 Msa0876150:intron 50.0%
! ATGCCGGTTACATTGTGCTC+GGG - chr6_1:13946076-13946095 Msa0876150:intron 50.0%
CAACCCGAGCACAATGTAAC+CGG + chr6_1:13946082-13946101 None:intergenic 50.0%
!! GCTCGGGTTGAACTAGAGTT+AGG - chr6_1:13946092-13946111 Msa0876150:intron 50.0%
GGGTTGAACTAGAGTTAGGC+AGG - chr6_1:13946096-13946115 Msa0876150:intron 50.0%
ACACCAGATCCAACTGTTGG+TGG - chr6_1:13946447-13946466 Msa0876150:intron 50.0%
CTTACAGTGCCACCAACAGT+TGG + chr6_1:13946459-13946478 None:intergenic 50.0%
GCTTTCACAGGCATGGCATA+TGG - chr6_1:13947179-13947198 Msa0876150:intron 50.0%
AACTAGTTCGGCTCTTCAGC+AGG - chr6_1:13947208-13947227 Msa0876150:intron 50.0%
GATGCCAATGCATTGAGAGG+GGG + chr6_1:13947362-13947381 None:intergenic 50.0%
GAGGCGATGAATGTGGACCA+AGG - chr6_1:13944728-13944747 Msa0876150:intron 55.0%
TCATGGTCGGAGAATGGTGG+AGG - chr6_1:13945779-13945798 Msa0876150:CDS 55.0%
GTGCCACCAACAGTTGGATC+TGG + chr6_1:13946453-13946472 None:intergenic 55.0%
GGATCCCCCTCTCAATGCAT+TGG - chr6_1:13947355-13947374 Msa0876150:five_prime_UTR 55.0%
CACTCGGGAGCAGCTTTCAC+AGG - chr6_1:13947167-13947186 Msa0876150:intron 60.0%
GGGAGCAGCTTTCACAGGCA+TGG - chr6_1:13947172-13947191 Msa0876150:intron 60.0%
CAGCAGGACGCGACATCACC+AGG - chr6_1:13947224-13947243 Msa0876150:intron 65.0%
GACGCGACATCACCAGGCAC+CGG - chr6_1:13947230-13947249 Msa0876150:intron 65.0%
!! TCACCAGGCACCGGTGGAGA+AGG - chr6_1:13947239-13947258 Msa0876150:intron 65.0%
AGTCCTTCTCCACCGGTGCC+TGG + chr6_1:13947245-13947264 None:intergenic 65.0%
!! GCGACATCACCAGGCACCGG+TGG - chr6_1:13947233-13947252 Msa0876150:intron 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 13943882 13947601 13943882 ID=Msa0876150;Name=Msa0876150
chr6_1 mRNA 13943882 13947601 13943882 ID=Msa0876150-mRNA-1;Parent=Msa0876150;Name=Msa0876150-mRNA-1;_AED=0.24;_eAED=0.24;_QI=198|1|1|1|0.71|0.62|8|168|424
chr6_1 exon 13943882 13944320 13943882 ID=Msa0876150-mRNA-1:exon:4031;Parent=Msa0876150-mRNA-1
chr6_1 exon 13944462 13944616 13944462 ID=Msa0876150-mRNA-1:exon:4030;Parent=Msa0876150-mRNA-1
chr6_1 exon 13945010 13945180 13945010 ID=Msa0876150-mRNA-1:exon:4029;Parent=Msa0876150-mRNA-1
chr6_1 exon 13945661 13945826 13945661 ID=Msa0876150-mRNA-1:exon:4028;Parent=Msa0876150-mRNA-1
chr6_1 exon 13946167 13946380 13946167 ID=Msa0876150-mRNA-1:exon:4027;Parent=Msa0876150-mRNA-1
chr6_1 exon 13946665 13946968 13946665 ID=Msa0876150-mRNA-1:exon:4026;Parent=Msa0876150-mRNA-1
chr6_1 exon 13947345 13947428 13947345 ID=Msa0876150-mRNA-1:exon:4025;Parent=Msa0876150-mRNA-1
chr6_1 exon 13947494 13947601 13947494 ID=Msa0876150-mRNA-1:exon:4024;Parent=Msa0876150-mRNA-1
chr6_1 five_prime_UTR 13947494 13947601 13947494 ID=Msa0876150-mRNA-1:five_prime_utr;Parent=Msa0876150-mRNA-1
chr6_1 five_prime_UTR 13947345 13947428 13947345 ID=Msa0876150-mRNA-1:five_prime_utr;Parent=Msa0876150-mRNA-1
chr6_1 five_prime_UTR 13946963 13946968 13946963 ID=Msa0876150-mRNA-1:five_prime_utr;Parent=Msa0876150-mRNA-1
chr6_1 CDS 13946665 13946962 13946665 ID=Msa0876150-mRNA-1:cds;Parent=Msa0876150-mRNA-1
chr6_1 CDS 13946167 13946380 13946167 ID=Msa0876150-mRNA-1:cds;Parent=Msa0876150-mRNA-1
chr6_1 CDS 13945661 13945826 13945661 ID=Msa0876150-mRNA-1:cds;Parent=Msa0876150-mRNA-1
chr6_1 CDS 13945010 13945180 13945010 ID=Msa0876150-mRNA-1:cds;Parent=Msa0876150-mRNA-1
chr6_1 CDS 13944462 13944616 13944462 ID=Msa0876150-mRNA-1:cds;Parent=Msa0876150-mRNA-1
chr6_1 CDS 13944050 13944320 13944050 ID=Msa0876150-mRNA-1:cds;Parent=Msa0876150-mRNA-1
chr6_1 three_prime_UTR 13943882 13944049 13943882 ID=Msa0876150-mRNA-1:three_prime_utr;Parent=Msa0876150-mRNA-1
Gene Sequence

>Msa0876150

ATGGCTGCATTTTCAGCATGTTACAGAACACCTTACAAGAACACATGCATAATTCTTGGCAGAGATTCTCTGTACAAGACCGCGACAAAAATACGTGTTCAGTGTTCAACAGAGTCTACCTCTGCTGAGAAGAAACTACGATCGTTAGATTCTTATTTTGGAAAACTACAACAAAATACAAAATTACATGTTTCCGATGCATCAAATGAGGCGATGAATGTGGACCAAGGAAATGGTCAATCTGAATCAAAACAAGAACTTGAGTCTCTTGATGAGTATCTTGGCAAACTAAATAATGGCATAAACCAAGAATCTCTTGTGGCATCTTATGTTGAAAATTCTAAGAATGAAAGTTTAGCTCCGAAACAAATTCTCAGCCAAGATACTCAAAGAACAAATTTTAGGAAATCAAATACTTATGTGAATATAAGAAGAATAAAAGGTGTTAATGGTTCAATATCTGCTATAGATTCACATGATCAGCTATATGATACATCAAGTCTTTATCTCATTGGTATATTGGCATCAGTGAACATTGGAGTGTTTCTATTTGAAATAGCAAGTCCTATAAGGAATGATAACTTAGAGCTGTTTTCACTTCCAATGTTATACGGAGCAAAGATAAACCATTTGATCATGGTCGGAGAATGGTGGAGGCTTATAACACCAATGTTTCTGCATGCAGGAATATTTCACATGGCTCTGAGTTGTTGGGCCCTTGTATCATTTGGGCCTCAAGTTTGCAAAGGCTATGGTTCATTTACATTTTTCTTGATCTACATACTTGGTGGAGTTTCTGGCAACTTTGCAAGTTTTCTACATACACCAGATCCAACTGTTGGTGGCACTGGACCTGCATTTGCAATACTTGGTGCTTGGCTCATGTACCAAATTCAAAATAGAGATGTCATTGAAAATCATGATTCTGACAATCTATTCAAGAAGGCAATAATTATTACAGCTCTTGGTTTCATATTATGCAACCTTGGTCCAATTGATGAGTGGTCACACTCGGGAGCAGCTTTCACAGGCATGGCATATGGCTTTCTAACTAGTTCGGCTCTTCAGCAGGACGCGACATCACCAGGCACCGGTGGAGAAGGACTGAAACTTGTTACAAAATACGGTGCTTCATGCAAATCACTTGTTATCTTCGCCATATTCGTCGTTGCTTTAAGTTCACTCCTTTTGTTTATGGATCCCCCTCTCAATGCATTGGCATCTGTTGATGAAGTAGCTGTTGTAGCCTTGGAATATATGTCAATACTTTGTTGA

Protein sequence

>Msa0876150

MAAFSACYRTPYKNTCIILGRDSLYKTATKIRVQCSTESTSAEKKLRSLDSYFGKLQQNTKLHVSDASNEAMNVDQGNGQSESKQELESLDEYLGKLNNGINQESLVASYVENSKNESLAPKQILSQDTQRTNFRKSNTYVNIRRIKGVNGSISAIDSHDQLYDTSSLYLIGILASVNIGVFLFEIASPIRNDNLELFSLPMLYGAKINHLIMVGEWWRLITPMFLHAGIFHMALSCWALVSFGPQVCKGYGSFTFFLIYILGGVSGNFASFLHTPDPTVGGTGPAFAILGAWLMYQIQNRDVIENHDSDNLFKKAIIITALGFILCNLGPIDEWSHSGAAFTGMAYGFLTSSALQQDATSPGTGGEGLKLVTKYGASCKSLVIFAIFVVALSSLLLFMDPPLNALASVDEVAVVALEYMSILC*