AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0865500


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0865500 MtrunA17_Chr5g0448421 98.917 277 3 0 1 277 1 277 0.0 554
Msa0865500 MtrunA17_Chr5g0448411 95.307 277 11 1 1 277 1 275 0.0 531
Msa0865500 MtrunA17_Chr3g0133901 47.436 234 101 9 47 274 45 262 5.24e-61 194
Msa0865500 MtrunA17_Chr8g0345631 42.500 240 112 7 37 274 50 265 6.35e-52 171
Msa0865500 MtrunA17_Chr3g0092091 40.727 275 127 10 9 274 2 249 1.57e-48 161
Msa0865500 MtrunA17_Chr2g0301081 43.111 225 101 7 56 274 61 264 2.28e-48 161
Msa0865500 MtrunA17_Chr4g0051941 37.868 272 131 11 10 269 9 254 1.37e-38 136
Msa0865500 MtrunA17_Chr5g0447531 38.542 288 123 15 1 269 1 253 7.63e-38 134
Msa0865500 MtrunA17_Chr6g0453141 36.466 266 134 9 14 269 13 253 3.45e-37 132
Msa0865500 MtrunA17_Chr6g0453151 41.014 217 93 9 63 269 129 320 5.32e-37 134
Msa0865500 MtrunA17_Chr6g0453181 40.553 217 94 9 63 269 62 253 6.66e-37 132
Msa0865500 MtrunA17_Chr2g0318521 41.475 217 94 8 63 269 59 252 8.47e-37 131
Msa0865500 MtrunA17_Chr6g0462031 41.395 215 93 8 60 270 49 234 1.50e-35 127
Msa0865500 MtrunA17_Chr6g0453161 36.559 279 141 10 1 269 268 520 2.37e-35 132
Msa0865500 MtrunA17_Chr6g0453161 41.014 217 93 9 63 269 64 255 1.12e-34 130
Msa0865500 MtrunA17_Chr6g0476641 38.211 246 114 10 41 274 60 279 1.16e-34 126
Msa0865500 MtrunA17_Chr1g0157481 33.574 277 138 10 26 277 78 333 3.52e-32 121
Msa0865500 MtrunA17_Chr6g0464511 34.146 205 86 6 65 269 45 200 3.60e-26 102
Msa0865500 MtrunA17_Chr2g0279001 35.567 194 91 8 69 247 75 249 6.60e-25 100
Msa0865500 MtrunA17_Chr4g0006181 30.418 263 112 6 55 274 110 344 1.13e-24 101
Msa0865500 MtrunA17_Chr6g0453171 58.108 74 30 1 196 269 14 86 6.96e-23 90.1
Msa0865500 MtrunA17_Chr3g0113311 30.126 239 96 6 59 254 59 269 3.73e-18 82.0
Msa0865500 MtrunA17_Chr2g0296081 53.333 75 30 2 200 274 32 101 1.95e-15 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0865500 AT1G61520.3 85.921 277 35 3 1 277 1 273 1.40e-167 465
Msa0865500 AT1G61520.1 85.921 277 35 3 1 277 1 273 1.40e-167 465
Msa0865500 AT1G61520.2 89.545 220 18 1 58 277 4 218 1.36e-144 404
Msa0865500 AT1G45474.2 42.188 256 126 9 23 274 14 251 1.07e-55 180
Msa0865500 AT1G45474.1 42.188 256 126 9 23 274 14 251 1.07e-55 180
Msa0865500 AT3G61470.1 42.500 240 115 7 41 274 32 254 2.97e-50 166
Msa0865500 AT3G47470.1 43.651 252 97 10 30 274 37 250 2.62e-48 161
Msa0865500 AT1G19150.1 38.168 262 138 7 18 277 31 270 3.68e-46 156
Msa0865500 AT3G27690.1 38.028 284 131 14 1 269 1 254 7.72e-39 137
Msa0865500 AT3G27690.2 38.028 284 131 14 1 269 33 286 1.38e-38 137
Msa0865500 AT2G05100.1 38.163 283 131 14 1 269 1 253 1.90e-38 136
Msa0865500 AT2G05070.1 37.809 283 132 14 1 269 1 253 1.37e-37 134
Msa0865500 AT5G54270.1 41.935 217 93 8 63 269 60 253 3.85e-37 132
Msa0865500 AT1G29930.1 38.745 271 131 9 10 269 9 255 6.38e-37 132
Msa0865500 AT1G29920.1 38.745 271 131 9 10 269 9 255 1.66e-36 131
Msa0865500 AT1G29910.1 38.745 271 131 9 10 269 9 255 1.66e-36 131
Msa0865500 AT2G34420.1 37.276 279 139 10 1 269 1 253 6.07e-36 129
Msa0865500 AT2G34430.1 37.903 248 114 10 38 269 31 254 2.49e-35 128
Msa0865500 AT3G54890.1 40.465 215 95 8 60 270 48 233 4.20e-35 127
Msa0865500 AT4G10340.1 39.184 245 111 10 42 274 52 270 3.64e-34 125
Msa0865500 AT1G76570.1 31.271 291 157 10 2 275 62 326 4.51e-30 115
Msa0865500 AT3G08940.2 30.935 278 121 6 40 274 35 284 8.15e-28 108
Msa0865500 AT2G05100.2 35.316 269 130 14 1 255 1 239 2.30e-27 108
Msa0865500 AT5G01530.1 30.038 263 113 6 55 274 53 287 1.39e-24 100
Msa0865500 AT1G15820.1 33.735 249 114 13 24 247 24 246 3.26e-24 98.6
Msa0865500 AT3G54890.4 37.079 178 80 7 60 234 48 196 1.28e-21 90.5
Msa0865500 AT2G40100.1 30.400 250 102 8 52 258 51 271 8.85e-17 78.6
Msa0865500 AT3G54890.2 31.532 222 71 9 60 270 48 199 1.61e-16 76.6
Msa0865500 AT5G28450.1 43.137 102 55 2 174 274 71 170 2.06e-16 75.5

Find 117 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTGCTTTGCCGAGAATTTC+AGG 0.135748 5_4:+66201012 None:intergenic
AATAAATAAAACTTGTAATT+TGG 0.148502 5_4:-66200227 Msa0865500:three_prime_UTR
GTTAGCTATGTTGGCAATAT+TGG 0.175999 5_4:-66200671 Msa0865500:CDS
TTTGTTCAAGCTCTTGTTAC+AGG 0.246233 5_4:-66200643 Msa0865500:CDS
ATATTTAACCCTCTTGGTTT+TGG 0.269352 5_4:-66200748 Msa0865500:CDS
ATGATCACTTGCAGCCTTCC+TGG 0.272420 5_4:-66201168 Msa0865500:intron
ATGGGAAAACAATACTTCTT+AGG 0.280187 5_4:-66200823 Msa0865500:CDS
CCAGATGATCTAAGAGGTTT+TGG 0.293540 5_4:+66200608 None:intergenic
TCATATCTTCCTGATCCATT+TGG 0.346145 5_4:-66202557 Msa0865500:five_prime_UTR
TTAGCTATGTTGGCAATATT+GGG 0.350553 5_4:-66200670 Msa0865500:CDS
TATATAATACATTCATTTAG+TGG 0.359289 5_4:+66200545 None:intergenic
AAAGCAAAGTCTTTCTTACT+TGG 0.368436 5_4:-66202034 Msa0865500:CDS
AGATCACTCCCATCTTCAAT+AGG 0.372428 5_4:-66202360 Msa0865500:CDS
TTAGGACTTGAGAAAGGTCT+TGG 0.373705 5_4:-66200805 Msa0865500:CDS
TGCAGCCTTCCTGGTGACTT+TGG 0.374400 5_4:-66201159 Msa0865500:intron
TTCTTCAAGAATGTAGTAGA+TGG 0.375775 5_4:+66202498 None:intergenic
AATGAATCCACCGGTTCCTT+CGG 0.378254 5_4:+66201110 None:intergenic
CCAAAACCTCTTAGATCATC+TGG 0.385529 5_4:-66200608 Msa0865500:CDS
TGCATCCACATGGCTACATT+TGG 0.400944 5_4:-66202589 Msa0865500:five_prime_UTR
GAGAAAGGTCTTGGAGGTTC+CGG 0.403381 5_4:-66200796 Msa0865500:CDS
GGACCTATATTTAACCCTCT+TGG 0.406735 5_4:-66200754 Msa0865500:CDS
ATGAATCCACCGGTTCCTTC+GGG 0.407084 5_4:+66201111 None:intergenic
GAATGGAAGGTTAGCTATGT+TGG 0.408440 5_4:-66200680 Msa0865500:CDS
CAACGGCCGCTTTGCAATGT+TGG 0.410538 5_4:-66201055 Msa0865500:CDS
CAAGCTCTTGTTACAGGAGT+TGG 0.415706 5_4:-66200637 Msa0865500:CDS
AACGGCCGCTTTGCAATGTT+GGG 0.418765 5_4:-66201054 Msa0865500:CDS
CTGCAGGAACATACAACTAC+TGG 0.419959 5_4:-66200936 Msa0865500:CDS
TGTGATGGAAATGGCATTCA+TGG 0.422186 5_4:-66200893 Msa0865500:CDS
AGCCAGGATTGTACCAATCT+TGG 0.425513 5_4:+66200848 None:intergenic
ATACACGTAATATGATGAAT+TGG 0.425683 5_4:+66202693 None:intergenic
GTAATATGATGAATTGGATA+AGG 0.430261 5_4:+66202699 None:intergenic
AACTATAAGCCAAATGGATC+AGG 0.432629 5_4:+66202548 None:intergenic
CTAGAAGACCCTATTGAAGA+TGG 0.437182 5_4:+66202351 None:intergenic
CACACTCTTTGTGATGGAAA+TGG 0.442080 5_4:-66200902 Msa0865500:CDS
GTCAAGATGTTGTTGTTGAC+AGG 0.444048 5_4:+66200580 None:intergenic
CAAAGTCTTTCTTACTTGGA+TGG 0.445116 5_4:-66202030 Msa0865500:CDS
TCAATAGGGTCTTCTAGAAA+AGG 0.446420 5_4:-66202345 Msa0865500:CDS
AAACCAAGAGGGTTAAATAT+AGG 0.452200 5_4:+66200751 None:intergenic
TTTGCAATGTTGGGAGCAGC+CGG 0.456975 5_4:-66201045 Msa0865500:CDS
TAATATGATGAATTGGATAA+GGG 0.458916 5_4:+66202700 None:intergenic
TGAAGTAACTATAAGCCAAA+TGG 0.461090 5_4:+66202542 None:intergenic
GTCTTTCTTACTTGGATGGA+AGG 0.462256 5_4:-66202026 Msa0865500:intron
AAGACAAGAGAGTGAAGAAA+AGG 0.465124 5_4:+66200442 None:intergenic
AACACAGAAGATTCCAAGAT+TGG 0.467039 5_4:-66200861 Msa0865500:CDS
TCGCCATATGCTAACCATCT+TGG 0.478129 5_4:+66201084 None:intergenic
AAGCTGAAGGAAGTTAAGAA+TGG 0.479661 5_4:-66200697 Msa0865500:CDS
AGTGAGAGATAGACCTTGGC+AGG 0.481039 5_4:+66202291 None:intergenic
CTTTCAGATCCCGAAGGAAC+CGG 0.485171 5_4:-66201120 Msa0865500:CDS
GCTATAGCACCTGAAATTCT+CGG 0.489754 5_4:-66201021 Msa0865500:CDS
AGCTTCTTCTCCTCCTGCCA+AGG 0.490862 5_4:-66202304 Msa0865500:intron
TGTACGTGTCATTTCTTACA+AGG 0.494586 5_4:+66200387 None:intergenic
CCTGAAATTCTCGGCAAAGC+AGG 0.501852 5_4:-66201012 Msa0865500:CDS
TTCCCTCCTTTGTTACCTCT+AGG 0.504632 5_4:+66202462 None:intergenic
CATTTAGTGGAACTTGAGAC+TGG 0.504734 5_4:+66200558 None:intergenic
GCACTCCCTTGGTTCCAAAC+CGG 0.505888 5_4:-66200970 Msa0865500:CDS
TTGGTACAATCCTGGCTCCA+TGG 0.508162 5_4:-66200842 Msa0865500:CDS
GATCACTCCCATCTTCAATA+GGG 0.512694 5_4:-66202359 Msa0865500:CDS
GAGCCAAGATGGTTAGCATA+TGG 0.514212 5_4:-66201087 Msa0865500:CDS
GAGGCTGTGAGACAGAGTCT+TGG 0.514771 5_4:-66202387 Msa0865500:CDS
GGACTTGAGAAAGGTCTTGG+AGG 0.517064 5_4:-66200802 Msa0865500:CDS
TAAAGATGAGAAATCATTGA+AGG 0.521323 5_4:-66200725 Msa0865500:CDS
GTGGATTCATTGAGCCAAGA+TGG 0.521507 5_4:-66201098 Msa0865500:CDS
AAAAGGTTCCTTTGTTGTCA+AGG 0.526175 5_4:-66202328 Msa0865500:CDS
TGAAGGAAGTTAAGAATGGA+AGG 0.527760 5_4:-66200693 Msa0865500:CDS
ACAAGAGAGTGAAGAAAAGG+TGG 0.530505 5_4:+66200445 None:intergenic
TCCGGCGAACCAGCTTATCC+TGG 0.533751 5_4:-66200778 Msa0865500:CDS
CAGTAGTTGTATGTTCCTGC+AGG 0.533860 5_4:+66200937 None:intergenic
TTCCAAGATTGGTACAATCC+TGG 0.536164 5_4:-66200850 Msa0865500:CDS
ATAGGTCCACCAGGATAAGC+TGG 0.537101 5_4:+66200769 None:intergenic
AATTTCAGGTGCTATAGCTC+CGG 0.537587 5_4:+66201026 None:intergenic
CAAGGGAGTGCTGTTTCCGC+GGG 0.537601 5_4:+66200982 None:intergenic
ATCACGCCGGTTTGGAACCA+AGG 0.543476 5_4:+66200964 None:intergenic
TAGAAGACCCTATTGAAGAT+GGG 0.548284 5_4:+66202352 None:intergenic
CCAAGGGAGTGCTGTTTCCG+CGG 0.549385 5_4:+66200981 None:intergenic
TACTTCTTAGGACTTGAGAA+AGG 0.549404 5_4:-66200811 Msa0865500:CDS
TTCCTAGAGGTAACAAAGGA+GGG 0.554204 5_4:-66202464 Msa0865500:five_prime_UTR
ACCAGGATAAGCTGGTTCGC+CGG 0.556663 5_4:+66200777 None:intergenic
TGTGAGCATGTTTCATGATG+TGG 0.565203 5_4:-66200410 Msa0865500:three_prime_UTR
ATTACGTGTATAAACATGGT+TGG 0.565397 5_4:-66202681 Msa0865500:five_prime_UTR
GACTTTGGATTTGACCCTCT+AGG 0.569949 5_4:-66201144 Msa0865500:CDS
TAGTTGTATGTTCCTGCAGG+TGG 0.570487 5_4:+66200940 None:intergenic
CAACTACACACTCTTTGTGA+TGG 0.574918 5_4:-66200908 Msa0865500:CDS
ACCGGCGTGATTCCACCTGC+AGG 0.575662 5_4:-66200952 Msa0865500:CDS
TGGTACAATCCTGGCTCCAT+GGG 0.575675 5_4:-66200841 Msa0865500:CDS
GTGATGGAAATGGCATTCAT+GGG 0.581162 5_4:-66200892 Msa0865500:CDS
ATTGAAGGAGTTAAAGCTGA+AGG 0.587176 5_4:-66200710 Msa0865500:CDS
CATCTTTACCAAAACCAAGA+GGG 0.593825 5_4:+66200740 None:intergenic
TCATATTACGTGTATAAACA+TGG 0.603916 5_4:-66202685 Msa0865500:five_prime_UTR
CTTGTTCCTAGAGGTAACAA+AGG 0.604243 5_4:-66202468 Msa0865500:five_prime_UTR
GAGAGATAGACCTTGGCAGG+AGG 0.606963 5_4:+66202294 None:intergenic
GGTCAGCCAGATGATCTAAG+AGG 0.611676 5_4:+66200602 None:intergenic
ATGGAGCAAATAGACAATTG+TGG 0.612091 5_4:-66202065 Msa0865500:CDS
ACATCATGAAACATGCTCAC+AGG 0.612680 5_4:+66200412 None:intergenic
TCTTGGCTCAATGAATCCAC+CGG 0.614464 5_4:+66201101 None:intergenic
GTTCCTAGAGGTAACAAAGG+AGG 0.614577 5_4:-66202465 Msa0865500:five_prime_UTR
TGCAGGAACATACAACTACT+GGG 0.614884 5_4:-66200935 Msa0865500:CDS
AGAAGCTGCCTTGACAACAA+AGG 0.615553 5_4:+66202320 None:intergenic
CGGGATCTGAAAGTCCTAGA+GGG 0.617233 5_4:+66201130 None:intergenic
GGGTTAAATATAGGTCCACC+AGG 0.621905 5_4:+66200760 None:intergenic
TCACGCCGGTTTGGAACCAA+GGG 0.621949 5_4:+66200965 None:intergenic
GGGTCAAATCCAAAGTCACC+AGG 0.625690 5_4:+66201150 None:intergenic
TTCTTGTGGTAGATATTGCA+TGG 0.626511 5_4:+66202621 None:intergenic
ACGTCCACGTTGCATCCACA+TGG 0.626539 5_4:-66202599 Msa0865500:five_prime_UTR
ATGCAACGTGGACGTTCTTG+TGG 0.631074 5_4:+66202607 None:intergenic
CAAAGCAGGTTTAATTCCCG+CGG 0.641267 5_4:-66200998 Msa0865500:CDS
TCAAGATGTTGTTGTTGACA+GGG 0.645710 5_4:+66200581 None:intergenic
TCAGATCCCGAAGGAACCGG+TGG 0.646981 5_4:-66201117 Msa0865500:CDS
TCCTGCAGGTGGAATCACGC+CGG 0.649684 5_4:+66200951 None:intergenic
CAAATCCAAAGTCACCAGGA+AGG 0.653377 5_4:+66201154 None:intergenic
CTAGGACTTTCAGATCCCGA+AGG 0.660487 5_4:-66201126 Msa0865500:CDS
TCGGGATCTGAAAGTCCTAG+AGG 0.663238 5_4:+66201129 None:intergenic
TCATCTTTACCAAAACCAAG+AGG 0.664345 5_4:+66200739 None:intergenic
GCATATGGCGAGATAATCAA+CGG 0.667486 5_4:-66201072 Msa0865500:CDS
TAACAAAGGAGGGAAGAACA+TGG 0.683240 5_4:-66202454 Msa0865500:exon
CTCTGCCAAATGTAGCCATG+TGG 0.685191 5_4:+66202584 None:intergenic
CTGCTCCCAACATTGCAAAG+CGG 0.723368 5_4:+66201049 None:intergenic
GTAGCCATGTGGATGCAACG+TGG 0.793429 5_4:+66202595 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTCTATATTAATTG+TGG - chr5_4:66201351-66201370 Msa0865500:intron 10.0%
!! AATAAATAAAACTTGTAATT+TGG - chr5_4:66202701-66202720 Msa0865500:five_prime_UTR 10.0%
!! TATATAATACATTCATTTAG+TGG + chr5_4:66202386-66202405 None:intergenic 15.0%
!! TAATATGATGAATTGGATAA+GGG + chr5_4:66200231-66200250 None:intergenic 20.0%
!!! ATAACTTTCTTTTCTCTTTT+TGG - chr5_4:66200829-66200848 Msa0865500:CDS 20.0%
!! TTGAACAAAAAACTATTGTA+AGG - chr5_4:66200940-66200959 Msa0865500:CDS 20.0%
!!! AGTATGAAATTGACTTTATT+CGG - chr5_4:66201733-66201752 Msa0865500:intron 20.0%
! GTAATATGATGAATTGGATA+AGG + chr5_4:66200232-66200251 None:intergenic 25.0%
! ATACACGTAATATGATGAAT+TGG + chr5_4:66200238-66200257 None:intergenic 25.0%
! TCATATTACGTGTATAAACA+TGG - chr5_4:66200243-66200262 Msa0865500:three_prime_UTR 25.0%
!!! AGTTTTTTGTTCAACTACTA+AGG + chr5_4:66200934-66200953 None:intergenic 25.0%
! AACAAAAAACTATTGTAAGG+TGG - chr5_4:66200943-66200962 Msa0865500:CDS 25.0%
! CTTGATTAAACTGTTTACTT+AGG + chr5_4:66201005-66201024 None:intergenic 25.0%
! ATCTACATGTTGTAATGTTA+AGG + chr5_4:66201289-66201308 None:intergenic 25.0%
! TTAATTGTGGTAACTTTGTA+TGG - chr5_4:66201364-66201383 Msa0865500:intron 25.0%
! TGTCTTTAGATTATTTCGAT+AGG + chr5_4:66201550-66201569 None:intergenic 25.0%
! CAATCACTTGTCTAAATATT+TGG + chr5_4:66201611-66201630 None:intergenic 25.0%
! ATGTTGTATACTTGTGTTAT+GGG + chr5_4:66201672-66201691 None:intergenic 25.0%
! TAAAGATGAGAAATCATTGA+AGG - chr5_4:66202203-66202222 Msa0865500:intron 25.0%
ATTACGTGTATAAACATGGT+TGG - chr5_4:66200247-66200266 Msa0865500:three_prime_UTR 30.0%
TGAAGTAACTATAAGCCAAA+TGG + chr5_4:66200389-66200408 None:intergenic 30.0%
TTCTTCAAGAATGTAGTAGA+TGG + chr5_4:66200433-66200452 None:intergenic 30.0%
! AAGAAAAAACTTGTTCCTAG+AGG - chr5_4:66200451-66200470 Msa0865500:three_prime_UTR 30.0%
ATATTACAACTGTCTCATGT+GGG - chr5_4:66200716-66200735 Msa0865500:CDS 30.0%
TTGTATATTTGTCAGTTCAG+TGG + chr5_4:66200782-66200801 None:intergenic 30.0%
AAAGCAAAGTCTTTCTTACT+TGG - chr5_4:66200894-66200913 Msa0865500:CDS 30.0%
ATGTAGATATGCAACTTTGT+TGG - chr5_4:66201301-66201320 Msa0865500:intron 30.0%
AAAATCTCAAAAGCCTTCTA+GGG + chr5_4:66201412-66201431 None:intergenic 30.0%
AAAAATCTCAAAAGCCTTCT+AGG + chr5_4:66201413-66201432 None:intergenic 30.0%
ATTGTGTTAGAACATAAGCT+TGG - chr5_4:66201627-66201646 Msa0865500:intron 30.0%
CATGTTGTATACTTGTGTTA+TGG + chr5_4:66201673-66201692 None:intergenic 30.0%
!!! TAAGAAGTATTGTTTTCCCA+TGG + chr5_4:66202106-66202125 None:intergenic 30.0%
ATGGGAAAACAATACTTCTT+AGG - chr5_4:66202105-66202124 Msa0865500:intron 30.0%
AAACCAAGAGGGTTAAATAT+AGG + chr5_4:66202180-66202199 None:intergenic 30.0%
! ATATTTAACCCTCTTGGTTT+TGG - chr5_4:66202180-66202199 Msa0865500:intron 30.0%
TTAGCTATGTTGGCAATATT+GGG - chr5_4:66202258-66202277 Msa0865500:intron 30.0%
! TTTCTTTTCTTTGCTCTTGT+TGG - chr5_4:66202424-66202443 Msa0865500:CDS 30.0%
!!! AAAAGGTGGTTGAGTTTTTT+TGG + chr5_4:66202472-66202491 None:intergenic 30.0%
!!! TACCTTTTTTTTCGAGGTAA+AGG - chr5_4:66202732-66202751 Msa0865500:five_prime_UTR 30.0%
TACCTTTACCTCGAAAAAAA+AGG + chr5_4:66202737-66202756 None:intergenic 30.0%
AGCAAAAACGTAATAGCAGT+GGG - chr5_4:66200191-66200210 Msa0865500:three_prime_UTR 35.0%
TTCTTGTGGTAGATATTGCA+TGG + chr5_4:66200310-66200329 None:intergenic 35.0%
TCATATCTTCCTGATCCATT+TGG - chr5_4:66200371-66200390 Msa0865500:three_prime_UTR 35.0%
AACTATAAGCCAAATGGATC+AGG + chr5_4:66200383-66200402 None:intergenic 35.0%
TAGAAGACCCTATTGAAGAT+GGG + chr5_4:66200579-66200598 None:intergenic 35.0%
! TCAATAGGGTCTTCTAGAAA+AGG - chr5_4:66200583-66200602 Msa0865500:CDS 35.0%
! AAAAGGTTCCTTTGTTGTCA+AGG - chr5_4:66200600-66200619 Msa0865500:CDS 35.0%
CACATGAGACAGTTGTAATA+TGG + chr5_4:66200717-66200736 None:intergenic 35.0%
CATATTACAACTGTCTCATG+TGG - chr5_4:66200715-66200734 Msa0865500:CDS 35.0%
!!! CTTTTTGGTGTTCAGCAAAA+TGG - chr5_4:66200844-66200863 Msa0865500:CDS 35.0%
ATGGAGCAAATAGACAATTG+TGG - chr5_4:66200863-66200882 Msa0865500:CDS 35.0%
CAAAGTCTTTCTTACTTGGA+TGG - chr5_4:66200898-66200917 Msa0865500:CDS 35.0%
TGTTTACTTAGGCATACTCT+AGG + chr5_4:66200994-66201013 None:intergenic 35.0%
AGAACATAAGCTTGGATACT+TGG - chr5_4:66201635-66201654 Msa0865500:intron 35.0%
AACACAGAAGATTCCAAGAT+TGG - chr5_4:66202067-66202086 Msa0865500:CDS 35.0%
TACTTCTTAGGACTTGAGAA+AGG - chr5_4:66202117-66202136 Msa0865500:intron 35.0%
CATCTTTACCAAAACCAAGA+GGG + chr5_4:66202191-66202210 None:intergenic 35.0%
TCATCTTTACCAAAACCAAG+AGG + chr5_4:66202192-66202211 None:intergenic 35.0%
ATTGAAGGAGTTAAAGCTGA+AGG - chr5_4:66202218-66202237 Msa0865500:intron 35.0%
AAGCTGAAGGAAGTTAAGAA+TGG - chr5_4:66202231-66202250 Msa0865500:intron 35.0%
TGAAGGAAGTTAAGAATGGA+AGG - chr5_4:66202235-66202254 Msa0865500:intron 35.0%
GTTAGCTATGTTGGCAATAT+TGG - chr5_4:66202257-66202276 Msa0865500:intron 35.0%
TTTGTTCAAGCTCTTGTTAC+AGG - chr5_4:66202285-66202304 Msa0865500:intron 35.0%
!! TGATCTAAGAGGTTTTGGTA+TGG + chr5_4:66202318-66202337 None:intergenic 35.0%
! TCAAGATGTTGTTGTTGACA+GGG + chr5_4:66202350-66202369 None:intergenic 35.0%
AAGACAAGAGAGTGAAGAAA+AGG + chr5_4:66202489-66202508 None:intergenic 35.0%
!! TGTACGTGTCATTTCTTACA+AGG + chr5_4:66202544-66202563 None:intergenic 35.0%
!!! ATCTGCTACCTTTTTTTTCG+AGG - chr5_4:66202726-66202745 Msa0865500:five_prime_UTR 35.0%
CAGCAAAAACGTAATAGCAG+TGG - chr5_4:66200190-66200209 Msa0865500:three_prime_UTR 40.0%
CTTGTTCCTAGAGGTAACAA+AGG - chr5_4:66200460-66200479 Msa0865500:three_prime_UTR 40.0%
TTCCTAGAGGTAACAAAGGA+GGG - chr5_4:66200464-66200483 Msa0865500:three_prime_UTR 40.0%
TAACAAAGGAGGGAAGAACA+TGG - chr5_4:66200474-66200493 Msa0865500:three_prime_UTR 40.0%
!! ATCTCTTACTTTTGCAGCTG+AGG - chr5_4:66200522-66200541 Msa0865500:three_prime_UTR 40.0%
AGATCACTCCCATCTTCAAT+AGG - chr5_4:66200568-66200587 Msa0865500:CDS 40.0%
GATCACTCCCATCTTCAATA+GGG - chr5_4:66200569-66200588 Msa0865500:CDS 40.0%
CTAGAAGACCCTATTGAAGA+TGG + chr5_4:66200580-66200599 None:intergenic 40.0%
TTTGAGTGAGAGATAGACCT+TGG + chr5_4:66200644-66200663 None:intergenic 40.0%
GTCTTTCTTACTTGGATGGA+AGG - chr5_4:66200902-66200921 Msa0865500:CDS 40.0%
TTATGCAAGTGCATGTGTTG+AGG - chr5_4:66201230-66201249 Msa0865500:intron 40.0%
! TGTGAGTCTAAAACCCTAGA+AGG - chr5_4:66201396-66201415 Msa0865500:intron 40.0%
GCATATGGCGAGATAATCAA+CGG - chr5_4:66201856-66201875 Msa0865500:intron 40.0%
! AATTTCAGGTGCTATAGCTC+CGG + chr5_4:66201905-66201924 None:intergenic 40.0%
GCTATAGCACCTGAAATTCT+CGG - chr5_4:66201907-66201926 Msa0865500:intron 40.0%
TGCAGGAACATACAACTACT+GGG - chr5_4:66201993-66202012 Msa0865500:intron 40.0%
CAACTACACACTCTTTGTGA+TGG - chr5_4:66202020-66202039 Msa0865500:intron 40.0%
! CACACTCTTTGTGATGGAAA+TGG - chr5_4:66202026-66202045 Msa0865500:intron 40.0%
! TGTGATGGAAATGGCATTCA+TGG - chr5_4:66202035-66202054 Msa0865500:CDS 40.0%
! GTGATGGAAATGGCATTCAT+GGG - chr5_4:66202036-66202055 Msa0865500:CDS 40.0%
TTCCAAGATTGGTACAATCC+TGG - chr5_4:66202078-66202097 Msa0865500:intron 40.0%
TTAGGACTTGAGAAAGGTCT+TGG - chr5_4:66202123-66202142 Msa0865500:intron 40.0%
GGACCTATATTTAACCCTCT+TGG - chr5_4:66202174-66202193 Msa0865500:intron 40.0%
! GAATGGAAGGTTAGCTATGT+TGG - chr5_4:66202248-66202267 Msa0865500:intron 40.0%
! CCAGATGATCTAAGAGGTTT+TGG + chr5_4:66202323-66202342 None:intergenic 40.0%
CCAAAACCTCTTAGATCATC+TGG - chr5_4:66202320-66202339 Msa0865500:CDS 40.0%
! GTCAAGATGTTGTTGTTGAC+AGG + chr5_4:66202351-66202370 None:intergenic 40.0%
CATTTAGTGGAACTTGAGAC+TGG + chr5_4:66202373-66202392 None:intergenic 40.0%
ACAAGAGAGTGAAGAAAAGG+TGG + chr5_4:66202486-66202505 None:intergenic 40.0%
ACATCATGAAACATGCTCAC+AGG + chr5_4:66202519-66202538 None:intergenic 40.0%
TGTGAGCATGTTTCATGATG+TGG - chr5_4:66202518-66202537 Msa0865500:five_prime_UTR 40.0%
TGCATCCACATGGCTACATT+TGG - chr5_4:66200339-66200358 Msa0865500:three_prime_UTR 45.0%
GTTCCTAGAGGTAACAAAGG+AGG - chr5_4:66200463-66200482 Msa0865500:three_prime_UTR 45.0%
TTCCCTCCTTTGTTACCTCT+AGG + chr5_4:66200469-66200488 None:intergenic 45.0%
AGAAGCTGCCTTGACAACAA+AGG + chr5_4:66200611-66200630 None:intergenic 45.0%
CAAATCCAAAGTCACCAGGA+AGG + chr5_4:66201777-66201796 None:intergenic 45.0%
GACTTTGGATTTGACCCTCT+AGG - chr5_4:66201784-66201803 Msa0865500:intron 45.0%
!! AATGAATCCACCGGTTCCTT+CGG + chr5_4:66201821-66201840 None:intergenic 45.0%
TCTTGGCTCAATGAATCCAC+CGG + chr5_4:66201830-66201849 None:intergenic 45.0%
GTGGATTCATTGAGCCAAGA+TGG - chr5_4:66201830-66201849 Msa0865500:intron 45.0%
GAGCCAAGATGGTTAGCATA+TGG - chr5_4:66201841-66201860 Msa0865500:intron 45.0%
TCGCCATATGCTAACCATCT+TGG + chr5_4:66201847-66201866 None:intergenic 45.0%
CAAAGCAGGTTTAATTCCCG+CGG - chr5_4:66201930-66201949 Msa0865500:intron 45.0%
TAGTTGTATGTTCCTGCAGG+TGG + chr5_4:66201991-66202010 None:intergenic 45.0%
CAGTAGTTGTATGTTCCTGC+AGG + chr5_4:66201994-66202013 None:intergenic 45.0%
CTGCAGGAACATACAACTAC+TGG - chr5_4:66201992-66202011 Msa0865500:intron 45.0%
AGCCAGGATTGTACCAATCT+TGG + chr5_4:66202083-66202102 None:intergenic 45.0%
! TATTGTTTTCCCATGGAGCC+AGG + chr5_4:66202099-66202118 None:intergenic 45.0%
GGGTTAAATATAGGTCCACC+AGG + chr5_4:66202171-66202190 None:intergenic 45.0%
CAAGCTCTTGTTACAGGAGT+TGG - chr5_4:66202291-66202310 Msa0865500:intron 45.0%
!! TAATATAGAAAATAAAAAAT+TGG + chr5_4:66201347-66201366 None:intergenic 5.0%
ATGCAACGTGGACGTTCTTG+TGG + chr5_4:66200324-66200343 None:intergenic 50.0%
CTCTGCCAAATGTAGCCATG+TGG + chr5_4:66200347-66200366 None:intergenic 50.0%
AGTGAGAGATAGACCTTGGC+AGG + chr5_4:66200640-66200659 None:intergenic 50.0%
ATGATCACTTGCAGCCTTCC+TGG - chr5_4:66201760-66201779 Msa0865500:intron 50.0%
GGGTCAAATCCAAAGTCACC+AGG + chr5_4:66201781-66201800 None:intergenic 50.0%
CGGGATCTGAAAGTCCTAGA+GGG + chr5_4:66201801-66201820 None:intergenic 50.0%
TCGGGATCTGAAAGTCCTAG+AGG + chr5_4:66201802-66201821 None:intergenic 50.0%
CTAGGACTTTCAGATCCCGA+AGG - chr5_4:66201802-66201821 Msa0865500:intron 50.0%
CTTTCAGATCCCGAAGGAAC+CGG - chr5_4:66201808-66201827 Msa0865500:intron 50.0%
!! ATGAATCCACCGGTTCCTTC+GGG + chr5_4:66201820-66201839 None:intergenic 50.0%
! AACGGCCGCTTTGCAATGTT+GGG - chr5_4:66201874-66201893 Msa0865500:intron 50.0%
CTGCTCCCAACATTGCAAAG+CGG + chr5_4:66201882-66201901 None:intergenic 50.0%
TTTGCAATGTTGGGAGCAGC+CGG - chr5_4:66201883-66201902 Msa0865500:intron 50.0%
CCTGCTTTGCCGAGAATTTC+AGG + chr5_4:66201919-66201938 None:intergenic 50.0%
CCTGAAATTCTCGGCAAAGC+AGG - chr5_4:66201916-66201935 Msa0865500:intron 50.0%
TTGGTACAATCCTGGCTCCA+TGG - chr5_4:66202086-66202105 Msa0865500:intron 50.0%
TGGTACAATCCTGGCTCCAT+GGG - chr5_4:66202087-66202106 Msa0865500:intron 50.0%
GGACTTGAGAAAGGTCTTGG+AGG - chr5_4:66202126-66202145 Msa0865500:intron 50.0%
GAGAAAGGTCTTGGAGGTTC+CGG - chr5_4:66202132-66202151 Msa0865500:intron 50.0%
ATAGGTCCACCAGGATAAGC+TGG + chr5_4:66202162-66202181 None:intergenic 50.0%
GGTCAGCCAGATGATCTAAG+AGG + chr5_4:66202329-66202348 None:intergenic 50.0%
ACGTCCACGTTGCATCCACA+TGG - chr5_4:66200329-66200348 Msa0865500:three_prime_UTR 55.0%
GTAGCCATGTGGATGCAACG+TGG + chr5_4:66200336-66200355 None:intergenic 55.0%
GAGGCTGTGAGACAGAGTCT+TGG - chr5_4:66200541-66200560 Msa0865500:three_prime_UTR 55.0%
AGCTTCTTCTCCTCCTGCCA+AGG - chr5_4:66200624-66200643 Msa0865500:CDS 55.0%
GAGAGATAGACCTTGGCAGG+AGG + chr5_4:66200637-66200656 None:intergenic 55.0%
TGCAGCCTTCCTGGTGACTT+TGG - chr5_4:66201769-66201788 Msa0865500:intron 55.0%
! CAACGGCCGCTTTGCAATGT+TGG - chr5_4:66201873-66201892 Msa0865500:intron 55.0%
GCACTCCCTTGGTTCCAAAC+CGG - chr5_4:66201958-66201977 Msa0865500:intron 55.0%
!! TCACGCCGGTTTGGAACCAA+GGG + chr5_4:66201966-66201985 None:intergenic 55.0%
!! ATCACGCCGGTTTGGAACCA+AGG + chr5_4:66201967-66201986 None:intergenic 55.0%
!! ACCAGGATAAGCTGGTTCGC+CGG + chr5_4:66202154-66202173 None:intergenic 55.0%
TCAGATCCCGAAGGAACCGG+TGG - chr5_4:66201811-66201830 Msa0865500:intron 60.0%
!! CAAGGGAGTGCTGTTTCCGC+GGG + chr5_4:66201949-66201968 None:intergenic 60.0%
!! CCAAGGGAGTGCTGTTTCCG+CGG + chr5_4:66201950-66201969 None:intergenic 60.0%
! CAGGTGGAATCACGCCGGTT+TGG + chr5_4:66201975-66201994 None:intergenic 60.0%
TCCTGCAGGTGGAATCACGC+CGG + chr5_4:66201980-66201999 None:intergenic 60.0%
TCCGGCGAACCAGCTTATCC+TGG - chr5_4:66202150-66202169 Msa0865500:intron 60.0%
GGCGAACCAGCTTATCCTGG+TGG - chr5_4:66202153-66202172 Msa0865500:intron 60.0%
CCGCGGAAACAGCACTCCCT+TGG - chr5_4:66201947-66201966 Msa0865500:intron 65.0%
ACCGGCGTGATTCCACCTGC+AGG - chr5_4:66201976-66201995 Msa0865500:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 66200175 66202775 66200175 ID=Msa0865500;Name=Msa0865500
chr5_4 mRNA 66200175 66202775 66200175 ID=Msa0865500-mRNA-1;Parent=Msa0865500;Name=Msa0865500-mRNA-1;_AED=0.03;_eAED=0.03;_QI=318|1|1|1|1|1|3|386|277
chr5_4 exon 66200175 66201176 66200175 ID=Msa0865500-mRNA-1:exon:20948;Parent=Msa0865500-mRNA-1
chr5_4 exon 66202027 66202091 66202027 ID=Msa0865500-mRNA-1:exon:20947;Parent=Msa0865500-mRNA-1
chr5_4 exon 66202305 66202775 66202305 ID=Msa0865500-mRNA-1:exon:20946;Parent=Msa0865500-mRNA-1
chr5_4 five_prime_UTR 66202458 66202775 66202458 ID=Msa0865500-mRNA-1:five_prime_utr;Parent=Msa0865500-mRNA-1
chr5_4 CDS 66202305 66202457 66202305 ID=Msa0865500-mRNA-1:cds;Parent=Msa0865500-mRNA-1
chr5_4 CDS 66202027 66202091 66202027 ID=Msa0865500-mRNA-1:cds;Parent=Msa0865500-mRNA-1
chr5_4 CDS 66200561 66201176 66200561 ID=Msa0865500-mRNA-1:cds;Parent=Msa0865500-mRNA-1
chr5_4 three_prime_UTR 66200175 66200560 66200175 ID=Msa0865500-mRNA-1:three_prime_utr;Parent=Msa0865500-mRNA-1
Gene Sequence

>Msa0865500

ATGGCTACACAAGCTCTAGTGTCGTCATCATCTCTTACTTTTGCAGCTGAGGCTGTGAGACAGAGTCTTGGAGCAAGATCACTCCCATCTTCAATAGGGTCTTCTAGAAAAGGTTCCTTTGTTGTCAAGGCAGCTTCTTCTCCTCCTGCCAAGCAAAATGGAGCAAATAGACAATTGTGGTTTGCATCAAAGCAAAGTCTTTCTTACTTGGATGGAAGCCTTCCTGGTGACTTTGGATTTGACCCTCTAGGACTTTCAGATCCCGAAGGAACCGGTGGATTCATTGAGCCAAGATGGTTAGCATATGGCGAGATAATCAACGGCCGCTTTGCAATGTTGGGAGCAGCCGGAGCTATAGCACCTGAAATTCTCGGCAAAGCAGGTTTAATTCCCGCGGAAACAGCACTCCCTTGGTTCCAAACCGGCGTGATTCCACCTGCAGGAACATACAACTACTGGGCAGACAACTACACACTCTTTGTGATGGAAATGGCATTCATGGGATTTGCAGAACACAGAAGATTCCAAGATTGGTACAATCCTGGCTCCATGGGAAAACAATACTTCTTAGGACTTGAGAAAGGTCTTGGAGGTTCCGGCGAACCAGCTTATCCTGGTGGACCTATATTTAACCCTCTTGGTTTTGGTAAAGATGAGAAATCATTGAAGGAGTTAAAGCTGAAGGAAGTTAAGAATGGAAGGTTAGCTATGTTGGCAATATTGGGTTACTTTGTTCAAGCTCTTGTTACAGGAGTTGGACCATACCAAAACCTCTTAGATCATCTGGCTGACCCTGTCAACAACAACATCTTGACCAGTCTCAAGTTCCACTAA

Protein sequence

>Msa0865500

MATQALVSSSSLTFAAEAVRQSLGARSLPSSIGSSRKGSFVVKAASSPPAKQNGANRQLWFASKQSLSYLDGSLPGDFGFDPLGLSDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGKQYFLGLEKGLGGSGEPAYPGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLLDHLADPVNNNILTSLKFH*