AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0376480

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376480 MtrunA17_Chr3g0127091 93.781 402 13 2 1 402 1 390 0.0 763
Msa0376480 MtrunA17_Chr2g0293811 32.492 317 152 10 59 358 57 328 1.39e-35 134
Msa0376480 MtrunA17_Chr4g0001761 29.882 338 162 10 62 358 22 325 2.33e-31 122
Msa0376480 MtrunA17_Chr1g0194191 30.312 320 167 9 60 365 76 353 3.22e-31 122
Msa0376480 MtrunA17_Chr5g0407161 28.846 312 164 7 62 363 84 347 4.39e-30 119
Msa0376480 MtrunA17_Chr4g0065141 28.617 311 165 8 60 358 82 347 4.74e-30 119
Msa0376480 MtrunA17_Chr1g0150071 28.691 359 182 8 62 379 22 347 2.14e-29 117
Msa0376480 MtrunA17_Chr3g0136811 26.810 373 179 8 62 383 22 351 5.25e-29 116
Msa0376480 MtrunA17_Chr3g0138281 26.129 310 172 7 60 358 79 342 9.38e-28 113
Msa0376480 MtrunA17_Chr1g0150451 27.044 318 167 9 49 358 60 320 1.32e-27 111
Msa0376480 MtrunA17_Chr3g0136711 26.899 316 166 9 51 358 19 277 1.42e-27 110
Msa0376480 MtrunA17_Chr1g0212961 29.703 303 145 10 62 358 94 334 1.76e-27 111
Msa0376480 MtrunA17_Chr5g0430481 29.568 301 147 11 70 361 130 374 1.07e-26 110
Msa0376480 MtrunA17_Chr6g0483411 28.754 313 151 9 70 358 51 315 2.62e-25 105
Msa0376480 MtrunA17_Chr3g0126511 27.759 299 154 8 65 358 96 337 3.47e-25 105
Msa0376480 MtrunA17_Chr3g0112291 25.680 331 167 8 63 361 92 375 3.70e-25 105
Msa0376480 MtrunA17_Chr3g0105371 27.723 303 150 9 70 361 94 338 2.25e-24 102
Msa0376480 MtrunA17_Chr3g0135961 24.930 357 172 11 58 361 226 539 2.23e-23 102
Msa0376480 MtrunA17_Chr1g0171571 27.812 320 154 12 60 361 384 644 2.32e-22 99.4
Msa0376480 MtrunA17_Chr2g0317021 27.273 297 146 10 74 361 97 332 4.32e-22 96.3
Msa0376480 MtrunA17_Chr1g0158781 29.630 324 157 12 61 364 110 382 4.34e-22 97.1
Msa0376480 MtrunA17_Chr4g0070871 24.928 345 164 9 64 361 207 503 7.41e-22 97.4
Msa0376480 MtrunA17_Chr3g0105351 25.994 327 170 10 49 361 46 314 1.02e-21 94.7
Msa0376480 MtrunA17_Chr4g0050381 27.273 308 153 11 61 358 27 273 1.11e-21 94.0
Msa0376480 MtrunA17_Chr8g0360351 27.574 272 129 8 94 358 68 278 2.96e-21 92.8
Msa0376480 MtrunA17_Chr5g0396731 27.759 299 159 8 44 331 53 305 1.52e-20 92.0
Msa0376480 MtrunA17_Chr1g0150781 25.356 351 162 11 64 361 240 543 2.43e-20 93.2
Msa0376480 MtrunA17_Chr2g0299981 25.205 365 170 13 56 361 215 535 6.60e-19 88.6
Msa0376480 MtrunA17_Chr2g0279151 26.623 308 155 11 61 358 31 277 1.08e-18 85.5
Msa0376480 MtrunA17_Chr8g0389921 23.353 334 176 7 62 361 147 434 1.23e-17 84.3
Msa0376480 MtrunA17_Chr5g0435721 24.468 282 149 7 63 329 192 424 2.48e-17 83.6
Msa0376480 MtrunA17_Chr4g0068971 32.121 165 79 3 212 374 113 246 2.63e-17 81.3
Msa0376480 MtrunA17_Chr4g0051661 24.828 290 140 10 76 346 165 395 2.81e-17 82.8
Msa0376480 MtrunA17_Chr7g0256751 26.974 304 185 10 74 365 52 330 1.07e-16 81.6
Msa0376480 MtrunA17_Chr3g0089721 24.367 316 174 10 92 370 68 355 2.38e-14 73.9
Msa0376480 MtrunA17_Chr3g0089711 23.975 317 176 10 92 371 68 356 5.21e-14 72.8
Msa0376480 MtrunA17_Chr7g0256771 25.795 283 164 10 74 339 53 306 2.47e-13 70.5
Msa0376480 MtrunA17_Chr7g0263281 25.856 263 138 10 91 330 70 298 6.74e-12 66.6
Msa0376480 MtrunA17_Chr1g0211251 24.092 303 167 7 46 329 49 307 8.40e-12 66.2
Msa0376480 MtrunA17_Chr1g0207571 26.172 256 136 8 91 324 60 284 1.50e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376480 AT4G27800.1 62.095 401 139 3 1 401 1 388 0.0 509
Msa0376480 AT4G27800.2 61.561 346 120 3 1 346 1 333 3.58e-150 429
Msa0376480 AT4G27800.3 60.355 338 121 3 1 338 1 325 8.58e-144 412
Msa0376480 AT3G62260.1 29.204 339 182 9 53 374 67 364 3.52e-33 128
Msa0376480 AT3G62260.2 29.204 339 182 9 53 374 68 365 3.80e-33 128
Msa0376480 AT1G43900.1 31.229 301 142 10 64 358 124 365 2.75e-30 120
Msa0376480 AT3G51470.2 27.213 305 167 6 60 358 25 280 4.32e-30 118
Msa0376480 AT3G62260.3 28.621 290 161 7 91 374 26 275 5.27e-30 117
Msa0376480 AT3G51470.1 27.213 305 167 6 60 358 69 324 8.79e-30 118
Msa0376480 AT5G53140.1 27.217 327 175 9 58 379 96 364 1.01e-27 114
Msa0376480 AT5G53140.2 27.217 327 175 9 58 379 96 364 1.01e-27 114
Msa0376480 AT2G25620.1 26.198 313 178 7 60 361 86 356 1.38e-27 113
Msa0376480 AT2G25620.2 26.198 313 178 7 60 361 86 356 1.38e-27 113
Msa0376480 AT2G33700.1 26.380 326 182 5 60 375 81 358 1.42e-27 112
Msa0376480 AT2G25070.1 27.479 353 162 9 62 363 22 331 3.90e-27 111
Msa0376480 AT2G25070.2 27.479 353 162 9 62 363 22 331 3.90e-27 111
Msa0376480 AT1G48040.1 28.659 328 179 10 60 374 75 360 4.49e-27 111
Msa0376480 AT5G24940.1 27.129 317 166 9 50 358 17 276 5.63e-27 112
Msa0376480 AT3G17250.1 28.869 336 176 13 43 358 98 390 7.30e-27 111
Msa0376480 AT4G31750.2 28.975 283 140 8 51 325 18 247 1.15e-26 108
Msa0376480 AT4G31750.1 28.975 283 140 8 51 325 18 247 1.85e-26 108
Msa0376480 AT4G31750.3 28.975 283 140 8 51 325 18 247 1.85e-26 108
Msa0376480 AT5G59220.1 27.517 298 140 7 63 337 111 355 8.41e-26 108
Msa0376480 AT1G67820.2 31.599 269 120 8 64 324 85 297 9.58e-26 108
Msa0376480 AT5G10740.1 26.814 317 167 9 50 358 17 276 1.42e-25 106
Msa0376480 AT5G10740.2 26.814 317 167 9 50 358 17 276 1.42e-25 106
Msa0376480 AT1G67820.1 31.599 269 120 8 64 324 121 333 1.57e-25 108
Msa0376480 AT2G29380.1 26.888 331 163 9 63 361 77 360 1.71e-25 106
Msa0376480 AT1G07160.1 28.024 339 164 11 46 361 95 376 3.29e-25 106
Msa0376480 AT1G18030.1 29.221 308 156 9 70 358 81 345 4.45e-25 105
Msa0376480 AT2G40180.1 30.132 302 150 11 70 361 135 385 5.71e-25 105
Msa0376480 AT2G40860.4 27.778 324 168 10 49 361 282 550 2.06e-24 105
Msa0376480 AT2G40860.1 27.778 324 168 10 49 361 380 648 2.51e-24 105
Msa0376480 AT2G40860.2 28.571 308 155 10 49 343 380 635 5.10e-23 101
Msa0376480 AT2G30020.1 27.907 301 154 9 70 361 146 392 2.22e-22 98.2
Msa0376480 AT4G28400.3 26.027 292 146 9 76 358 27 257 6.25e-22 94.7
Msa0376480 AT1G07430.1 24.457 368 166 11 57 361 115 433 8.21e-22 97.1
Msa0376480 AT4G28400.1 26.027 292 146 9 76 358 49 279 1.34e-21 94.4
Msa0376480 AT3G15260.2 26.962 293 144 12 75 358 54 285 4.95e-21 92.8
Msa0376480 AT3G15260.1 26.962 293 144 12 75 358 54 285 4.95e-21 92.8
Msa0376480 AT2G20630.1 26.370 292 145 10 76 358 45 275 4.34e-20 90.1
Msa0376480 AT2G20630.2 26.370 292 145 10 76 358 45 275 5.86e-20 89.7
Msa0376480 AT5G57050.2 24.277 346 167 10 64 361 73 371 1.05e-19 90.5
Msa0376480 AT3G11410.1 27.243 301 156 9 51 332 94 350 1.45e-19 90.1
Msa0376480 AT5G57050.1 24.277 346 167 10 64 361 113 411 1.89e-19 90.1
Msa0376480 AT1G18030.2 29.771 262 123 9 70 313 81 299 3.66e-19 87.8
Msa0376480 AT2G34740.1 26.621 293 143 12 76 358 101 331 6.20e-19 87.8
Msa0376480 AT1G72770.4 23.002 413 198 14 10 361 148 501 1.05e-18 88.2
Msa0376480 AT1G72770.1 23.002 413 198 14 10 361 148 501 1.05e-18 88.2
Msa0376480 AT1G72770.3 23.002 413 198 14 10 361 148 501 1.05e-18 88.2
Msa0376480 AT5G59220.2 28.922 204 106 6 63 243 111 298 4.53e-18 84.7
Msa0376480 AT4G26080.1 23.729 354 177 11 64 372 129 434 5.45e-18 85.9
Msa0376480 AT1G78200.1 24.918 305 165 10 62 358 31 279 3.69e-17 81.6
Msa0376480 AT1G78200.3 24.918 305 165 10 62 358 31 279 3.69e-17 81.6
Msa0376480 AT1G78200.2 24.918 305 165 10 62 358 31 279 3.69e-17 81.6
Msa0376480 AT1G78200.5 25.172 290 154 9 76 358 1 234 6.00e-17 80.1
Msa0376480 AT1G78200.4 25.172 290 154 9 76 358 1 234 6.00e-17 80.1
Msa0376480 AT5G51760.2 23.876 356 173 9 57 361 73 381 1.76e-16 80.9
Msa0376480 AT5G51760.1 23.876 356 173 9 57 361 103 411 2.04e-16 80.9
Msa0376480 AT1G22280.3 23.962 313 169 10 58 358 28 283 2.41e-16 79.3
Msa0376480 AT1G22280.1 24.437 311 164 10 58 358 28 277 3.05e-16 79.0
Msa0376480 AT2G40860.3 27.612 268 131 9 49 305 380 595 3.43e-14 74.7
Msa0376480 AT5G02760.1 24.242 297 174 8 46 330 40 297 5.68e-13 70.1
Msa0376480 AT5G57050.3 28.293 205 111 7 64 242 113 307 7.65e-13 69.3
Msa0376480 AT2G34740.2 25.911 247 115 10 76 312 115 303 7.74e-13 69.3
Msa0376480 AT2G34740.3 25.911 247 115 10 76 312 97 285 8.49e-13 68.9
Msa0376480 AT5G06750.3 25.746 268 139 9 88 329 78 311 1.97e-12 68.6
Msa0376480 AT5G06750.1 25.746 268 139 9 88 329 78 311 1.97e-12 68.6
Msa0376480 AT4G38520.2 24.521 261 144 6 91 330 80 308 3.83e-12 67.8
Msa0376480 AT4G38520.1 24.521 261 144 6 91 330 80 308 3.83e-12 67.8
Msa0376480 AT3G17090.1 26.172 256 144 11 91 329 83 310 4.19e-12 67.8
Msa0376480 AT3G17090.2 26.172 256 144 11 91 329 83 310 4.59e-12 67.0
Msa0376480 AT5G19280.1 27.431 288 144 12 90 361 339 577 9.21e-12 67.0
Msa0376480 AT3G51370.1 24.125 257 148 9 91 329 78 305 3.36e-11 64.7
Msa0376480 AT3G51370.3 24.125 257 148 9 91 329 78 305 3.36e-11 64.7
Msa0376480 AT1G34750.4 25.670 261 127 10 62 312 33 236 4.61e-11 63.2

Find 114 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAAGAGGTGGAGTGTTTA+TGG 0.113064 3_1:+76596956 None:intergenic
TCTGTTTGTGTTTATGTATT+TGG 0.232802 3_1:+76596936 None:intergenic
GAGAAACCTTGGAGACTATT+TGG 0.260980 3_1:+76596754 None:intergenic
CTTATTATTTCCTAGGAATA+TGG 0.264600 3_1:+76595866 None:intergenic
TGTTAGCATCCGATGGCTTA+TGG 0.271564 3_1:-76593793 Msa0376480:CDS
TGAGGACTAGTTAGCAATTC+TGG 0.276029 3_1:+76595315 None:intergenic
CTGACATGAGGTTGTTAAAA+TGG 0.280042 3_1:-76596049 Msa0376480:intron
GCTTCAAACTTGAAAGCTTT+AGG 0.297676 3_1:-76597028 Msa0376480:five_prime_UTR
TTGCTGTATCCCGTGCATTT+GGG 0.314251 3_1:-76594218 Msa0376480:CDS
AAGCTGCTAATTTCACATAT+TGG 0.316833 3_1:-76595846 Msa0376480:CDS
ATTGCTGTATCCCGTGCATT+TGG 0.322501 3_1:-76594219 Msa0376480:CDS
TGGAAGATGATATTATTCTT+AGG 0.339370 3_1:-76596777 Msa0376480:CDS
AGAGTTACTTGATAAATATC+AGG 0.343230 3_1:+76593839 None:intergenic
TCTTTCGCGGCCGTGTTTGA+TGG 0.343544 3_1:-76596733 Msa0376480:CDS
AACATTTAAAAGAAAATATC+AGG 0.346106 3_1:+76592782 None:intergenic
GAATTGTGTCTATTGGAATC+TGG 0.357830 3_1:-76592946 Msa0376480:CDS
ACCGTTGGAATTGTGTCTAT+TGG 0.358693 3_1:-76592953 Msa0376480:CDS
CAGACTCTCCTCCTATTAGA+TGG 0.360549 3_1:-76596834 Msa0376480:CDS
AATCCGTTAAAATCAGTTAG+AGG 0.362802 3_1:-76597149 Msa0376480:five_prime_UTR
ATCCCTTGCACAAGTCGTTT+TGG 0.370646 3_1:-76593508 Msa0376480:intron
AGCATTATAATTGCCGATCT+AGG 0.371221 3_1:-76593383 Msa0376480:CDS
GAGAGAGAGAGTTAGATAAC+AGG 0.372425 3_1:+76597116 None:intergenic
GATACTGATCCCCATCTAAT+AGG 0.373259 3_1:+76596823 None:intergenic
TTAGCAGCTTATTATTTCCT+AGG 0.379640 3_1:+76595859 None:intergenic
GTTTATGGAGCTTAGTTAAG+AGG 0.385365 3_1:+76596971 None:intergenic
ACTAGTCCTCACCGTCCATA+TGG 0.386128 3_1:-76595303 Msa0376480:CDS
GTTAGCATCCGATGGCTTAT+GGG 0.389003 3_1:-76593792 Msa0376480:CDS
ATGGGGATCAGTATCTTTGC+AGG 0.390272 3_1:-76596815 Msa0376480:CDS
TTGCTTCTGTCCAGTTCCTC+AGG 0.392143 3_1:-76596699 Msa0376480:intron
TTTAAAGGCTTGAAATGAAA+GGG 0.400684 3_1:-76595923 Msa0376480:intron
GTGAAAAGGATGCTACAAAA+AGG 0.413005 3_1:-76594049 Msa0376480:CDS
ATAGCTAAGACCTGAGGAAC+TGG 0.414366 3_1:+76596689 None:intergenic
GGGGAGGAGGAGGATGAATC+AGG 0.415467 3_1:-76595903 Msa0376480:CDS
TGAAATGAAAGGGGAGGAGG+AGG 0.428058 3_1:-76595913 Msa0376480:CDS
GATATTTATCAAGTAACTCT+TGG 0.438968 3_1:-76593836 Msa0376480:CDS
ATCAAAAGAATCAGAGAAGC+AGG 0.445855 3_1:-76595255 Msa0376480:CDS
GGACAGAAAAGTTCATTTCC+CGG 0.447424 3_1:-76594009 Msa0376480:intron
GCAGGGTCCACGTGAAGAAA+TGG 0.449478 3_1:-76596797 Msa0376480:CDS
AAGAGGAATCTTTGTATATG+TGG 0.453079 3_1:+76596988 None:intergenic
GAGGCCTTGTTGCTCCCATA+TGG 0.455386 3_1:+76595288 None:intergenic
TTCCAACGGTGGCTAGGGCT+TGG 0.460560 3_1:+76592966 None:intergenic
TGTGTTTATGTATTTGGAAG+AGG 0.466639 3_1:+76596942 None:intergenic
CACAATTCCAACGGTGGCTA+GGG 0.467000 3_1:+76592961 None:intergenic
GCGGCCGTGTTTGATGGCCA+TGG 0.471142 3_1:-76596727 Msa0376480:CDS
AAGTTTGAAGCTAAAGATGA+AGG 0.471540 3_1:+76597040 None:intergenic
GAAGTAAAGAAGTATGCATC+TGG 0.475549 3_1:+76592871 None:intergenic
GCTTGAAATGAAAGGGGAGG+AGG 0.477022 3_1:-76595916 Msa0376480:CDS
ATTACCAACGGTAGGATTTG+CGG 0.480678 3_1:-76594246 Msa0376480:CDS
CCGTGTTTGATGGCCATGGA+GGG 0.482647 3_1:-76596723 Msa0376480:CDS
ACATCTTAGTAGAATCTACT+TGG 0.485502 3_1:-76592817 Msa0376480:three_prime_UTR
ACACAATTCCAACGGTGGCT+AGG 0.491960 3_1:+76592960 None:intergenic
TCTCCAAGGTTTCTCTTTCG+CGG 0.496528 3_1:-76596746 Msa0376480:CDS
ACAGCAACTGCCATATTCCT+AGG 0.507970 3_1:-76595876 Msa0376480:CDS
AACTTGAAAGCTTTAGGTGA+TGG 0.512962 3_1:-76597022 Msa0376480:exon
CTTAGGCCAAATAGTCTCCA+AGG 0.519183 3_1:-76596760 Msa0376480:CDS
GCTTATGGGATTACATGAGC+AGG 0.519531 3_1:-76593778 Msa0376480:intron
ATGTACACTAAATATTATAC+AGG 0.519730 3_1:+76592845 None:intergenic
CTAGTCCTCACCGTCCATAT+GGG 0.520919 3_1:-76595302 Msa0376480:CDS
GAATCAGAGAAGCAGGTGGA+TGG 0.523820 3_1:-76595248 Msa0376480:CDS
AAGGAGCTCAGGAAGGAAGA+TGG 0.526606 3_1:-76594030 Msa0376480:CDS
TGCTGTATCCCGTGCATTTG+GGG 0.527648 3_1:-76594217 Msa0376480:CDS
GCATTATAATTGCCGATCTA+GGG 0.535217 3_1:-76593382 Msa0376480:intron
AGTTTGAAGCTAAAGATGAA+GGG 0.543295 3_1:+76597041 None:intergenic
AGACTCTCCTCCTATTAGAT+GGG 0.543447 3_1:-76596833 Msa0376480:CDS
TTTATAGTGTTAGCATCCGA+TGG 0.544491 3_1:-76593800 Msa0376480:CDS
AACGGATTGGATTCTCTCGG+TGG 0.545973 3_1:+76597164 None:intergenic
GTGCTTGCAGGAAGACAGAC+TGG 0.546345 3_1:-76593033 Msa0376480:intron
GGAGAGTCTGTCAATGATGA+AGG 0.549099 3_1:+76596847 None:intergenic
CGGCCGCGAAAGAGAAACCT+TGG 0.549935 3_1:+76596743 None:intergenic
CTCAGTTCAGATACTGAAGA+AGG 0.550057 3_1:+76597080 None:intergenic
GTCCAAGCCCTAGCCACCGT+TGG 0.555090 3_1:-76592968 Msa0376480:CDS
CAATGATGAAGGTGCATCAA+TGG 0.556018 3_1:+76596858 None:intergenic
ACAAAATACATACCCTAGAT+CGG 0.557827 3_1:+76593370 None:intergenic
ATCGCATGTCCCCAAATGCA+CGG 0.559501 3_1:+76594208 None:intergenic
TTTAACGGATTGGATTCTCT+CGG 0.562239 3_1:+76597161 None:intergenic
CCCTCCATGGCCATCAAACA+CGG 0.563996 3_1:+76596723 None:intergenic
TGTACAGTTCAAAGATGACT+TGG 0.565147 3_1:-76593873 Msa0376480:CDS
AATCAGAGAAGCAGGTGGAT+GGG 0.572153 3_1:-76595247 Msa0376480:intron
GTTTATGTATTTGGAAGAGG+TGG 0.576117 3_1:+76596945 None:intergenic
TGTTGAAGAAGCATTAAAGC+AGG 0.576690 3_1:-76596084 Msa0376480:CDS
TCGCATGTCCCCAAATGCAC+GGG 0.578399 3_1:+76594209 None:intergenic
TACCAAAACGACTTGTGCAA+GGG 0.580364 3_1:+76593506 None:intergenic
GAGTGTCTTGAAGCTCTACA+AGG 0.580723 3_1:-76596140 Msa0376480:CDS
TTACCAAAACGACTTGTGCA+AGG 0.581838 3_1:+76593505 None:intergenic
TTAAAGGCTTGAAATGAAAG+GGG 0.583830 3_1:-76595922 Msa0376480:intron
ACACTAAATATTATACAGGC+AGG 0.583996 3_1:+76592849 None:intergenic
TCATCTTCCATTTCTTCACG+TGG 0.584276 3_1:+76596790 None:intergenic
CTACAGGGATGAGTTATACA+AGG 0.587623 3_1:-76596162 Msa0376480:intron
GGACAGAAGCAAACCCTCCA+TGG 0.588408 3_1:+76596710 None:intergenic
ATCTCCGCAAATCCTACCGT+TGG 0.588610 3_1:+76594242 None:intergenic
GAGTTACTTGATAAATATCA+GGG 0.596312 3_1:+76593840 None:intergenic
ACTGATCCCCATCTAATAGG+AGG 0.597752 3_1:+76596826 None:intergenic
GTCTTGAAGCTCTACAAGGT+GGG 0.604160 3_1:-76596136 Msa0376480:CDS
CATGTAATCCCATAAGCCAT+CGG 0.609703 3_1:+76593784 None:intergenic
GCCGTGTTTGATGGCCATGG+AGG 0.611537 3_1:-76596724 Msa0376480:CDS
AAGGCTTGAAATGAAAGGGG+AGG 0.613590 3_1:-76595919 Msa0376480:CDS
TGAAGGTGCATCAATGGCTA+TGG 0.614608 3_1:+76596864 None:intergenic
ACATATTGGTGACTCATCTG+TGG 0.614996 3_1:-76595832 Msa0376480:intron
TGGGGATCAGTATCTTTGCA+GGG 0.616882 3_1:-76596814 Msa0376480:CDS
TTCTTTAGATTACCAACGGT+AGG 0.622788 3_1:-76594254 Msa0376480:intron
CCTTGTTGCTCCCATATGGA+CGG 0.623217 3_1:+76595292 None:intergenic
GACTCTCCTCCTATTAGATG+GGG 0.625445 3_1:-76596832 Msa0376480:CDS
TGGCTATGGCAGAACAGCAA+CGG 0.629952 3_1:+76596878 None:intergenic
CCGTCCATATGGGAGCAACA+AGG 0.639612 3_1:-76595292 Msa0376480:CDS
CATTTGTTAAAGCTGACATG+AGG 0.639772 3_1:-76596061 Msa0376480:CDS
TCTGCAGGACCAACGTACAC+AGG 0.646615 3_1:-76593414 Msa0376480:intron
AGGGATCAACTACGAAAACA+TGG 0.647059 3_1:-76593644 Msa0376480:CDS
TCCAATAGACACAATTCCAA+CGG 0.647966 3_1:+76592952 None:intergenic
TTGCTCCCATATGGACGGTG+AGG 0.659175 3_1:+76595297 None:intergenic
AAAAGAATCAGAGAAGCAGG+TGG 0.661475 3_1:-76595252 Msa0376480:CDS
TGTCTTGAAGCTCTACAAGG+TGG 0.664593 3_1:-76596137 Msa0376480:CDS
ACGAAAACATGGAAACACAC+AGG 0.687122 3_1:-76593633 Msa0376480:intron
AATAGACACAATTCCAACGG+TGG 0.712558 3_1:+76592955 None:intergenic
TGACATTATCCTGTGTACGT+TGG 0.736320 3_1:+76593405 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAATGAAAATAAAATTC+TGG - chr3_1:76594864-76594883 Msa0376480:intron 10.0%
!! ATTAATTAATTATGTGTGTT+TGG - chr3_1:76593251-76593270 Msa0376480:intron 15.0%
!! TTAATTAATTATGTGTGTTT+GGG - chr3_1:76593252-76593271 Msa0376480:intron 15.0%
!! AAATTTACAAAATCAATACA+AGG + chr3_1:76593299-76593318 None:intergenic 15.0%
!!! TTAATCAATTTTATTCATGT+AGG - chr3_1:76594526-76594545 Msa0376480:intron 15.0%
!!! ATAATTAATCTGATGTTTTA+TGG - chr3_1:76594923-76594942 Msa0376480:intron 15.0%
!!! TAATTAATCTGATGTTTTAT+GGG - chr3_1:76594924-76594943 Msa0376480:intron 15.0%
!!! TCATTTTGAATAATTTGTTT+AGG - chr3_1:76595112-76595131 Msa0376480:intron 15.0%
!!! CTTTTTTAATAATATTGGAT+AGG + chr3_1:76595161-76595180 None:intergenic 15.0%
!!! CATCTCTTTTTTAATAATAT+TGG + chr3_1:76595166-76595185 None:intergenic 15.0%
!! TTTGAATTTCATTGATATTT+AGG - chr3_1:76595389-76595408 Msa0376480:intron 15.0%
!!! TTTTATTTAATTTACCTTGA+TGG - chr3_1:76595511-76595530 Msa0376480:intron 15.0%
!!! TTTTTTTTTTCTTTTCACAA+AGG + chr3_1:76596597-76596616 None:intergenic 15.0%
!! ATTTAATAAAACTCATATTC+TGG - chr3_1:76596630-76596649 Msa0376480:intron 15.0%
!! AACATTTAAAAGAAAATATC+AGG + chr3_1:76597105-76597124 None:intergenic 15.0%
!! TAATTAATTATGTGTGTTTG+GGG - chr3_1:76593253-76593272 Msa0376480:intron 20.0%
!! TAGTTAAAAGCTTATAACAT+AGG - chr3_1:76593416-76593435 Msa0376480:intron 20.0%
!!! ATAACAAATCTAGAATCATT+TGG + chr3_1:76593902-76593921 None:intergenic 20.0%
!!! ATTTGTTATGATTACATTGA+AGG - chr3_1:76593913-76593932 Msa0376480:intron 20.0%
!!! AGACAGTATTTTGTTTTTAA+AGG - chr3_1:76593946-76593965 Msa0376480:intron 20.0%
!!! AAAACCAATTTTGTATTCTT+AGG - chr3_1:76594167-76594186 Msa0376480:intron 20.0%
!!! TTCAAAAAATGGAAAAGTAT+CGG + chr3_1:76594385-76594404 None:intergenic 20.0%
!! ATAAATCATACATTTGACTA+GGG - chr3_1:76594418-76594437 Msa0376480:intron 20.0%
!! ATATAAAAAATGAAGGAACA+AGG + chr3_1:76594671-76594690 None:intergenic 20.0%
!!! AAAGAGCATATAAAAAATGA+AGG + chr3_1:76594678-76594697 None:intergenic 20.0%
!!! AATTAATCTGATGTTTTATG+GGG - chr3_1:76594925-76594944 Msa0376480:intron 20.0%
!! GAAATATATTGTTTCCAATA+AGG - chr3_1:76595010-76595029 Msa0376480:intron 20.0%
!! AAACACAATCCTAATAAAAT+AGG - chr3_1:76595291-76595310 Msa0376480:CDS 20.0%
!!! TGATTTCATGATTTTGTTTT+GGG + chr3_1:76595336-76595355 None:intergenic 20.0%
!!! TTGATTTCATGATTTTGTTT+TGG + chr3_1:76595337-76595356 None:intergenic 20.0%
!! ATAAATTCCTTTATACTAGA+AGG + chr3_1:76595747-76595766 None:intergenic 20.0%
!! ATGTACACTAAATATTATAC+AGG + chr3_1:76597042-76597061 None:intergenic 20.0%
! TCTGTTTGTGTTTATGTATT+TGG + chr3_1:76592951-76592970 None:intergenic 25.0%
! TGGAAGATGATATTATTCTT+AGG - chr3_1:76593107-76593126 Msa0376480:intron 25.0%
! TGTTTCTTTATTATGAAAGC+CGG - chr3_1:76593369-76593388 Msa0376480:intron 25.0%
!! TTATTTTCATAAGTGGTACA+TGG + chr3_1:76593474-76593493 None:intergenic 25.0%
!!! TTTCAGCTTATTTTCATAAG+TGG + chr3_1:76593481-76593500 None:intergenic 25.0%
! TAGAGAATTTCAAATGTGTT+TGG + chr3_1:76593632-76593651 None:intergenic 25.0%
!!! TTTTAAAGGCTTGAAATGAA+AGG - chr3_1:76593960-76593979 Msa0376480:intron 25.0%
! TTTAAAGGCTTGAAATGAAA+GGG - chr3_1:76593961-76593980 Msa0376480:intron 25.0%
! CTTATTATTTCCTAGGAATA+TGG + chr3_1:76594021-76594040 None:intergenic 25.0%
! ACTACCTAAGAATACAAAAT+TGG + chr3_1:76594174-76594193 None:intergenic 25.0%
! CTACTTACTTAGTTACATAT+CGG - chr3_1:76594319-76594338 Msa0376480:intron 25.0%
! TACTTACTTAGTTACATATC+GGG - chr3_1:76594320-76594339 Msa0376480:intron 25.0%
!!! TCAAAAAATGGAAAAGTATC+GGG + chr3_1:76594384-76594403 None:intergenic 25.0%
! GTTGTAGATACTTCAAAAAA+TGG + chr3_1:76594396-76594415 None:intergenic 25.0%
! CATAAATCATACATTTGACT+AGG - chr3_1:76594417-76594436 Msa0376480:intron 25.0%
! ATCATTCAACTAGAATATCT+AGG - chr3_1:76594476-76594495 Msa0376480:intron 25.0%
! TCATTCAACTAGAATATCTA+GGG - chr3_1:76594477-76594496 Msa0376480:intron 25.0%
!!! TTTTATATGCTCTTTGAGTT+TGG - chr3_1:76594683-76594702 Msa0376480:intron 25.0%
!!! TTGAGTTTGGTCAATTTTTT+TGG - chr3_1:76594696-76594715 Msa0376480:intron 25.0%
!!! TTTTTGGTTTTAAAGAGTCT+AGG - chr3_1:76594712-76594731 Msa0376480:intron 25.0%
! GTCAAAAAGACATCAATTTA+TGG - chr3_1:76595051-76595070 Msa0376480:intron 25.0%
! AGAAATAACAAAAACAGTTG+AGG - chr3_1:76595189-76595208 Msa0376480:intron 25.0%
! GAAATAACAAAAACAGTTGA+GGG - chr3_1:76595190-76595209 Msa0376480:intron 25.0%
! AAATAACAAAAACAGTTGAG+GGG - chr3_1:76595191-76595210 Msa0376480:intron 25.0%
!!! TTTTTGCTTTTGTTTGAGTT+TGG + chr3_1:76595223-76595242 None:intergenic 25.0%
! CTAATATCCAACTACAAATT+AGG - chr3_1:76595359-76595378 Msa0376480:intron 25.0%
! TTCAAACTACACTTTATTGA+AGG - chr3_1:76595445-76595464 Msa0376480:intron 25.0%
!! TTGAAGGTCATTCTTTTAAT+TGG - chr3_1:76595461-76595480 Msa0376480:intron 25.0%
!!! TGAAGGTCATTCTTTTAATT+GGG - chr3_1:76595462-76595481 Msa0376480:intron 25.0%
! AAGGAATGATTTAGAGATTA+AGG + chr3_1:76595728-76595747 None:intergenic 25.0%
! AATCATTCCTTCTAGTATAA+AGG - chr3_1:76595737-76595756 Msa0376480:intron 25.0%
! GAGTTACTTGATAAATATCA+GGG + chr3_1:76596047-76596066 None:intergenic 25.0%
! AGAGTTACTTGATAAATATC+AGG + chr3_1:76596048-76596067 None:intergenic 25.0%
! GATATTTATCAAGTAACTCT+TGG - chr3_1:76596048-76596067 Msa0376480:intron 25.0%
! TGCCAAAAACTTTATATTTG+AGG - chr3_1:76596276-76596295 Msa0376480:intron 25.0%
!! TGCCTCAAATATAAAGTTTT+TGG + chr3_1:76596281-76596300 None:intergenic 25.0%
! TTGTCATGTATATATGACTT+TGG - chr3_1:76596533-76596552 Msa0376480:intron 25.0%
! TTGTTTAAATCCTAAACCTT+TGG + chr3_1:76596707-76596726 None:intergenic 25.0%
!! TCTAACTGATTTTAACGGAT+TGG + chr3_1:76592736-76592755 None:intergenic 30.0%
AATCCGTTAAAATCAGTTAG+AGG - chr3_1:76592735-76592754 Msa0376480:three_prime_UTR 30.0%
!! AAGCCTCTAACTGATTTTAA+CGG + chr3_1:76592741-76592760 None:intergenic 30.0%
! AGTTTGAAGCTAAAGATGAA+GGG + chr3_1:76592846-76592865 None:intergenic 30.0%
! AAGTTTGAAGCTAAAGATGA+AGG + chr3_1:76592847-76592866 None:intergenic 30.0%
AAGAGGAATCTTTGTATATG+TGG + chr3_1:76592899-76592918 None:intergenic 30.0%
TGTGTTTATGTATTTGGAAG+AGG + chr3_1:76592945-76592964 None:intergenic 30.0%
TAAGCTAACAAACATGAGAA+AGG + chr3_1:76593231-76593250 None:intergenic 30.0%
CTTATCCAAACAAATTACAC+CGG + chr3_1:76593391-76593410 None:intergenic 30.0%
!! ACTAAGCTTTAGAACATGTT+TGG + chr3_1:76593597-76593616 None:intergenic 30.0%
! GACACGTTTTATGTATTAAC+TGG + chr3_1:76593865-76593884 None:intergenic 30.0%
TTAAAGGCTTGAAATGAAAG+GGG - chr3_1:76593962-76593981 Msa0376480:intron 30.0%
TTAGCAGCTTATTATTTCCT+AGG + chr3_1:76594028-76594047 None:intergenic 30.0%
AAGCTGCTAATTTCACATAT+TGG - chr3_1:76594038-76594057 Msa0376480:CDS 30.0%
CTAAAGACACAAATGTCATT+TGG + chr3_1:76594220-76594239 None:intergenic 30.0%
ATGACATTTGTGTCTTTAGT+TGG - chr3_1:76594221-76594240 Msa0376480:CDS 30.0%
! TATCAGACATGTATCGATAT+TGG - chr3_1:76594346-76594365 Msa0376480:intron 30.0%
!! CAAAAAATGGAAAAGTATCG+GGG + chr3_1:76594383-76594402 None:intergenic 30.0%
CATTCAACTAGAATATCTAG+GGG - chr3_1:76594478-76594497 Msa0376480:intron 30.0%
!!! TCTTTTGATTTCTTGAAGAG+AGG + chr3_1:76594618-76594637 None:intergenic 30.0%
AAAATCACACTTACAAAGTG+TGG - chr3_1:76594739-76594758 Msa0376480:intron 30.0%
ATTATGAGTTGTGACAACTT+AGG - chr3_1:76594894-76594913 Msa0376480:intron 30.0%
! AATTGATGTCTTTTTGACAG+TGG + chr3_1:76595049-76595068 None:intergenic 30.0%
TCAGGTGATAGGAAATTAAT+TGG - chr3_1:76595089-76595108 Msa0376480:intron 30.0%
!!! AGGATTGTGTTTTTAGAGAT+AGG + chr3_1:76595283-76595302 None:intergenic 30.0%
CCTAATAAAATAGGACAGTT+CGG - chr3_1:76595300-76595319 Msa0376480:CDS 30.0%
GACAACGTTCATTTCAAAAA+TGG + chr3_1:76595549-76595568 None:intergenic 30.0%
CGTGCTTTCATTATATAGAA+CGG + chr3_1:76595573-76595592 None:intergenic 30.0%
CGTTCTATATAATGAAAGCA+CGG - chr3_1:76595571-76595590 Msa0376480:intron 30.0%
! CCTTTTCTTTAGATTACCAA+CGG - chr3_1:76595626-76595645 Msa0376480:intron 30.0%
ACATACATAAGATTACCTAC+CGG + chr3_1:76595897-76595916 None:intergenic 30.0%
GAACAAGCAGAATATTATTG+CGG + chr3_1:76596336-76596355 None:intergenic 30.0%
ACAAAATACATACCCTAGAT+CGG + chr3_1:76596517-76596536 None:intergenic 30.0%
CAGCAATTACGTTCTATAAT+TGG - chr3_1:76596560-76596579 Msa0376480:intron 30.0%
TAAAACTCATATTCTGGTCA+TGG - chr3_1:76596636-76596655 Msa0376480:intron 30.0%
! ATATCACTAGAGCATTAATG+TGG - chr3_1:76596680-76596699 Msa0376480:intron 30.0%
ACACTAAATATTATACAGGC+AGG + chr3_1:76597038-76597057 None:intergenic 30.0%
ACATCTTAGTAGAATCTACT+TGG - chr3_1:76597067-76597086 Msa0376480:five_prime_UTR 30.0%
!! TTTAACGGATTGGATTCTCT+CGG + chr3_1:76592726-76592745 None:intergenic 35.0%
GCTTCAAACTTGAAAGCTTT+AGG - chr3_1:76592856-76592875 Msa0376480:three_prime_UTR 35.0%
!! AACTTGAAAGCTTTAGGTGA+TGG - chr3_1:76592862-76592881 Msa0376480:three_prime_UTR 35.0%
GTTTATGGAGCTTAGTTAAG+AGG + chr3_1:76592916-76592935 None:intergenic 35.0%
GTTTATGTATTTGGAAGAGG+TGG + chr3_1:76592942-76592961 None:intergenic 35.0%
TTGAATATAGCTAAGACCTG+AGG + chr3_1:76593204-76593223 None:intergenic 35.0%
TTTCATAAGTGGTACATGGT+AGG + chr3_1:76593470-76593489 None:intergenic 35.0%
AATAAGCTGAAAACAGCTCA+TGG - chr3_1:76593489-76593508 Msa0376480:intron 35.0%
AGATTGTTTGGGAAAGCTTA+TGG + chr3_1:76593533-76593552 None:intergenic 35.0%
GAACACTAGTGAGATTGTTT+GGG + chr3_1:76593544-76593563 None:intergenic 35.0%
TGAACACTAGTGAGATTGTT+TGG + chr3_1:76593545-76593564 None:intergenic 35.0%
!! GCTTTAGAACATGTTTGGAT+TGG + chr3_1:76593592-76593611 None:intergenic 35.0%
ATAGTGTGCATTTGCTCTTA+TGG + chr3_1:76593655-76593674 None:intergenic 35.0%
!! TGTTGAAGAAGCATTAAAGC+AGG - chr3_1:76593800-76593819 Msa0376480:CDS 35.0%
! CATTTGTTAAAGCTGACATG+AGG - chr3_1:76593823-76593842 Msa0376480:CDS 35.0%
CTGACATGAGGTTGTTAAAA+TGG - chr3_1:76593835-76593854 Msa0376480:CDS 35.0%
!! GTTTTATGAGAGGCACAATA+AGG + chr3_1:76594095-76594114 None:intergenic 35.0%
! CATTGTGCATGTTTTATGAG+AGG + chr3_1:76594105-76594124 None:intergenic 35.0%
!!! TTGGTTTTGTGACACATTCA+TGG + chr3_1:76594155-76594174 None:intergenic 35.0%
CTTAGGTAGTAATGTATCGA+AGG - chr3_1:76594184-76594203 Msa0376480:intron 35.0%
!! ATGTAGGTTTTATGCAGATC+TGG - chr3_1:76594542-76594561 Msa0376480:intron 35.0%
ATCAAAAGAATCAGAGAAGC+AGG - chr3_1:76594629-76594648 Msa0376480:intron 35.0%
CACTTGGTAAAACTAGGAAA+TGG + chr3_1:76594965-76594984 None:intergenic 35.0%
AACAATCAAACCACAACACT+TGG + chr3_1:76594981-76595000 None:intergenic 35.0%
GTAACTGATTGGAACCTTAT+TGG + chr3_1:76595027-76595046 None:intergenic 35.0%
! TTTTGACAGTGGTAACTGAT+TGG + chr3_1:76595038-76595057 None:intergenic 35.0%
TTAATTTCCTATCACCTGAC+AGG + chr3_1:76595088-76595107 None:intergenic 35.0%
! CCGAACTGTCCTATTTTATT+AGG + chr3_1:76595303-76595322 None:intergenic 35.0%
! ATGAGCACCTAATTTGTAGT+TGG + chr3_1:76595369-76595388 None:intergenic 35.0%
!! GGTCATTCTTTTAATTGGGT+TGG - chr3_1:76595466-76595485 Msa0376480:intron 35.0%
!!! TTACCTTGATGGTGCAATTT+TGG - chr3_1:76595522-76595541 Msa0376480:intron 35.0%
!! CCGTTGGTAATCTAAAGAAA+AGG + chr3_1:76595629-76595648 None:intergenic 35.0%
TTCTTTAGATTACCAACGGT+AGG - chr3_1:76595630-76595649 Msa0376480:intron 35.0%
!!! CACTTAGGAAGCATTTTAAC+AGG + chr3_1:76595798-76595817 None:intergenic 35.0%
GCAAAAGGTAGATAACACTT+AGG + chr3_1:76595813-76595832 None:intergenic 35.0%
GTGAAAAGGATGCTACAAAA+AGG - chr3_1:76595835-76595854 Msa0376480:CDS 35.0%
CATACATAAGATTACCTACC+GGG + chr3_1:76595896-76595915 None:intergenic 35.0%
TGTACAGTTCAAAGATGACT+TGG - chr3_1:76596011-76596030 Msa0376480:intron 35.0%
TTTATAGTGTTAGCATCCGA+TGG - chr3_1:76596084-76596103 Msa0376480:CDS 35.0%
! AGGGTAGCAGAAATGATTTT+GGG + chr3_1:76596146-76596165 None:intergenic 35.0%
! AAGGGTAGCAGAAATGATTT+TGG + chr3_1:76596147-76596166 None:intergenic 35.0%
!!! TTCTGCTACCCTTCTTTTTT+TGG - chr3_1:76596154-76596173 Msa0376480:CDS 35.0%
ATTGTGAAGGTAATTCTCTG+CGG + chr3_1:76596182-76596201 None:intergenic 35.0%
AGCATTATAATTGCCGATCT+AGG - chr3_1:76596501-76596520 Msa0376480:intron 35.0%
GCATTATAATTGCCGATCTA+GGG - chr3_1:76596502-76596521 Msa0376480:intron 35.0%
!! TTCTTTTCACAAAGGCATAG+CGG + chr3_1:76596589-76596608 None:intergenic 35.0%
TTAATGTGGTCCAAAGGTTT+AGG - chr3_1:76596694-76596713 Msa0376480:intron 35.0%
AGCACTCAATATAAAACGCA+TGG + chr3_1:76596836-76596855 None:intergenic 35.0%
! GTTTTATATTGAGTGCTTGC+AGG - chr3_1:76596839-76596858 Msa0376480:CDS 35.0%
TCCAATAGACACAATTCCAA+CGG + chr3_1:76596935-76596954 None:intergenic 35.0%
GAATTGTGTCTATTGGAATC+TGG - chr3_1:76596938-76596957 Msa0376480:CDS 35.0%
! GAAGTAAAGAAGTATGCATC+TGG + chr3_1:76597016-76597035 None:intergenic 35.0%
GAGAGAGAGAGTTAGATAAC+AGG + chr3_1:76592771-76592790 None:intergenic 40.0%
CTCAGTTCAGATACTGAAGA+AGG + chr3_1:76592807-76592826 None:intergenic 40.0%
! CAATGATGAAGGTGCATCAA+TGG + chr3_1:76593029-76593048 None:intergenic 40.0%
AGACTCTCCTCCTATTAGAT+GGG - chr3_1:76593051-76593070 Msa0376480:intron 40.0%
GATACTGATCCCCATCTAAT+AGG + chr3_1:76593064-76593083 None:intergenic 40.0%
TCATCTTCCATTTCTTCACG+TGG + chr3_1:76593097-76593116 None:intergenic 40.0%
GAGAAACCTTGGAGACTATT+TGG + chr3_1:76593133-76593152 None:intergenic 40.0%
!! GAAAGCCGGTGTAATTTGTT+TGG - chr3_1:76593383-76593402 Msa0376480:CDS 40.0%
GTATAACTCATCCCTGTAGT+TGG + chr3_1:76593721-76593740 None:intergenic 40.0%
CTACAGGGATGAGTTATACA+AGG - chr3_1:76593722-76593741 Msa0376480:intron 40.0%
! ACATATTGGTGACTCATCTG+TGG - chr3_1:76594052-76594071 Msa0376480:CDS 40.0%
! TATGAGAGGCACAATAAGGA+TGG + chr3_1:76594091-76594110 None:intergenic 40.0%
! GTATCGATATTGGATAGCGT+CGG - chr3_1:76594356-76594375 Msa0376480:intron 40.0%
!! TGAGGACTAGTTAGCAATTC+TGG + chr3_1:76594572-76594591 None:intergenic 40.0%
AAAAGAATCAGAGAAGCAGG+TGG - chr3_1:76594632-76594651 Msa0376480:intron 40.0%
ACTTACAAAGTGTGGAGAAG+AGG - chr3_1:76594747-76594766 Msa0376480:intron 40.0%
CTTACAAAGTGTGGAGAAGA+GGG - chr3_1:76594748-76594767 Msa0376480:intron 40.0%
AAGTCAGCTTAGACGGTAAA+AGG + chr3_1:76594822-76594841 None:intergenic 40.0%
! TTACCGTCTAAGCTGACTTT+CGG - chr3_1:76594823-76594842 Msa0376480:intron 40.0%
AGTTGTGACAACTTAGGATG+TGG - chr3_1:76594900-76594919 Msa0376480:intron 40.0%
CCACAACACTTGGTAAAACT+AGG + chr3_1:76594971-76594990 None:intergenic 40.0%
!!! CCTAGTTTTACCAAGTGTTG+TGG - chr3_1:76594968-76594987 Msa0376480:intron 40.0%
! TATAATGAAAGCACGGTGCA+TGG - chr3_1:76595578-76595597 Msa0376480:intron 40.0%
ATTACCAACGGTAGGATTTG+CGG - chr3_1:76595638-76595657 Msa0376480:intron 40.0%
! TCTACCTTTTGCGTGTGAAA+AGG - chr3_1:76595821-76595840 Msa0376480:intron 40.0%
GGACAGAAAAGTTCATTTCC+CGG - chr3_1:76595875-76595894 Msa0376480:CDS 40.0%
AGAAAAGTTCATTTCCCGGT+AGG - chr3_1:76595879-76595898 Msa0376480:CDS 40.0%
GTCATCTTTGAACTGTACAC+TGG + chr3_1:76596010-76596029 None:intergenic 40.0%
CATGTAATCCCATAAGCCAT+CGG + chr3_1:76596103-76596122 None:intergenic 40.0%
! GGGTAGCAGAAATGATTTTG+GGG + chr3_1:76596145-76596164 None:intergenic 40.0%
CTGCGGAACCAAAAAAAGAA+GGG + chr3_1:76596165-76596184 None:intergenic 40.0%
TCTGCGGAACCAAAAAAAGA+AGG + chr3_1:76596166-76596185 None:intergenic 40.0%
CAAGGATAGCAAGATTGTGA+AGG + chr3_1:76596195-76596214 None:intergenic 40.0%
! AGACGCAGTTTCTTTTGTGA+GGG - chr3_1:76596221-76596240 Msa0376480:intron 40.0%
AGGGATCAACTACGAAAACA+TGG - chr3_1:76596240-76596259 Msa0376480:intron 40.0%
ACGAAAACATGGAAACACAC+AGG - chr3_1:76596251-76596270 Msa0376480:intron 40.0%
TACCAAAACGACTTGTGCAA+GGG + chr3_1:76596381-76596400 None:intergenic 40.0%
TTACCAAAACGACTTGTGCA+AGG + chr3_1:76596382-76596401 None:intergenic 40.0%
TCCATTATGATACACTCTGC+AGG - chr3_1:76596455-76596474 Msa0376480:intron 40.0%
TCCTGCAGAGTGTATCATAA+TGG + chr3_1:76596459-76596478 None:intergenic 40.0%
TGACATTATCCTGTGTACGT+TGG + chr3_1:76596482-76596501 None:intergenic 40.0%
! AGAGCATTAATGTGGTCCAA+AGG - chr3_1:76596688-76596707 Msa0376480:intron 40.0%
AATAGACACAATTCCAACGG+TGG + chr3_1:76596932-76596951 None:intergenic 40.0%
ACCGTTGGAATTGTGTCTAT+TGG - chr3_1:76596931-76596950 Msa0376480:CDS 40.0%
! TGGAAGAGGTGGAGTGTTTA+TGG + chr3_1:76592931-76592950 None:intergenic 45.0%
! TGAAGGTGCATCAATGGCTA+TGG + chr3_1:76593023-76593042 None:intergenic 45.0%
GGAGAGTCTGTCAATGATGA+AGG + chr3_1:76593040-76593059 None:intergenic 45.0%
CAGACTCTCCTCCTATTAGA+TGG - chr3_1:76593050-76593069 Msa0376480:intron 45.0%
GACTCTCCTCCTATTAGATG+GGG - chr3_1:76593052-76593071 Msa0376480:intron 45.0%
ACTGATCCCCATCTAATAGG+AGG + chr3_1:76593061-76593080 None:intergenic 45.0%
ATGGGGATCAGTATCTTTGC+AGG - chr3_1:76593069-76593088 Msa0376480:intron 45.0%
TGGGGATCAGTATCTTTGCA+GGG - chr3_1:76593070-76593089 Msa0376480:intron 45.0%
CTTAGGCCAAATAGTCTCCA+AGG - chr3_1:76593124-76593143 Msa0376480:intron 45.0%
TCTCCAAGGTTTCTCTTTCG+CGG - chr3_1:76593138-76593157 Msa0376480:intron 45.0%
ATAGCTAAGACCTGAGGAAC+TGG + chr3_1:76593198-76593217 None:intergenic 45.0%
TGTGCCAAATGCCAACTACA+GGG - chr3_1:76593707-76593726 Msa0376480:intron 45.0%
TCATCCCTGTAGTTGGCATT+TGG + chr3_1:76593714-76593733 None:intergenic 45.0%
GAGTGTCTTGAAGCTCTACA+AGG - chr3_1:76593744-76593763 Msa0376480:intron 45.0%
TGTCTTGAAGCTCTACAAGG+TGG - chr3_1:76593747-76593766 Msa0376480:intron 45.0%
GTCTTGAAGCTCTACAAGGT+GGG - chr3_1:76593748-76593767 Msa0376480:intron 45.0%
AAGGCTTGAAATGAAAGGGG+AGG - chr3_1:76593965-76593984 Msa0376480:intron 45.0%
ACAGCAACTGCCATATTCCT+AGG - chr3_1:76594008-76594027 Msa0376480:intron 45.0%
AATCAGAGAAGCAGGTGGAT+GGG - chr3_1:76594637-76594656 Msa0376480:intron 45.0%
AGTGTGGAGAAGAGGGTTAT+TGG - chr3_1:76594755-76594774 Msa0376480:intron 45.0%
CGGAGACATTTGATGTGTTG+GGG + chr3_1:76594796-76594815 None:intergenic 45.0%
GCGGAGACATTTGATGTGTT+GGG + chr3_1:76594797-76594816 None:intergenic 45.0%
TGCGGAGACATTTGATGTGT+TGG + chr3_1:76594798-76594817 None:intergenic 45.0%
GCTTAGACGGTAAAAGGTTG+CGG + chr3_1:76594816-76594835 None:intergenic 45.0%
! TACCGTCTAAGCTGACTTTC+GGG - chr3_1:76594824-76594843 Msa0376480:intron 45.0%
CTATCACCTGACAGGCTAAA+GGG + chr3_1:76595080-76595099 None:intergenic 45.0%
GGTCCAAAATTGCACCATCA+AGG + chr3_1:76595528-76595547 None:intergenic 45.0%
ATTGCTGTATCCCGTGCATT+TGG - chr3_1:76595665-76595684 Msa0376480:intron 45.0%
TTGCTGTATCCCGTGCATTT+GGG - chr3_1:76595666-76595685 Msa0376480:intron 45.0%
! GCATCCTTTTCACACGCAAA+AGG + chr3_1:76595828-76595847 None:intergenic 45.0%
GATGCTACAAAAAGGAGCTC+AGG - chr3_1:76595843-76595862 Msa0376480:CDS 45.0%
CTACAAAAAGGAGCTCAGGA+AGG - chr3_1:76595847-76595866 Msa0376480:CDS 45.0%
TGTTAGCATCCGATGGCTTA+TGG - chr3_1:76596091-76596110 Msa0376480:CDS 45.0%
GTTAGCATCCGATGGCTTAT+GGG - chr3_1:76596092-76596111 Msa0376480:CDS 45.0%
GCTTATGGGATTACATGAGC+AGG - chr3_1:76596106-76596125 Msa0376480:CDS 45.0%
! CAGACGCAGTTTCTTTTGTG+AGG - chr3_1:76596220-76596239 Msa0376480:intron 45.0%
TATTATTGCGGCTGCTTCGA+TGG + chr3_1:76596324-76596343 None:intergenic 45.0%
! ATCCCTTGCACAAGTCGTTT+TGG - chr3_1:76596376-76596395 Msa0376480:intron 45.0%
! GTGACATTTTGTTGCTGCAG+TGG + chr3_1:76596886-76596905 None:intergenic 45.0%
TGGCTATGGCAGAACAGCAA+CGG + chr3_1:76593009-76593028 None:intergenic 50.0%
TTGCTTCTGTCCAGTTCCTC+AGG - chr3_1:76593185-76593204 Msa0376480:intron 50.0%
CTGTGCCAAATGCCAACTAC+AGG - chr3_1:76593706-76593725 Msa0376480:intron 50.0%
GCTTGAAATGAAAGGGGAGG+AGG - chr3_1:76593968-76593987 Msa0376480:intron 50.0%
TGAAATGAAAGGGGAGGAGG+AGG - chr3_1:76593971-76593990 Msa0376480:intron 50.0%
ACTAGTCCTCACCGTCCATA+TGG - chr3_1:76594581-76594600 Msa0376480:intron 50.0%
CTAGTCCTCACCGTCCATAT+GGG - chr3_1:76594582-76594601 Msa0376480:intron 50.0%
CCTTGTTGCTCCCATATGGA+CGG + chr3_1:76594595-76594614 None:intergenic 50.0%
GAATCAGAGAAGCAGGTGGA+TGG - chr3_1:76594636-76594655 Msa0376480:intron 50.0%
ACATTTGATGTGTTGGGGCG+TGG + chr3_1:76594791-76594810 None:intergenic 50.0%
GTCCCGAAAGTCAGCTTAGA+CGG + chr3_1:76594829-76594848 None:intergenic 50.0%
! TAAGCTGACTTTCGGGACTC+TGG - chr3_1:76594831-76594850 Msa0376480:intron 50.0%
CCTATCACCTGACAGGCTAA+AGG + chr3_1:76595081-76595100 None:intergenic 50.0%
CCTTTAGCCTGTCAGGTGAT+AGG - chr3_1:76595078-76595097 Msa0376480:intron 50.0%
ATCTCCGCAAATCCTACCGT+TGG + chr3_1:76595645-76595664 None:intergenic 50.0%
TGCTGTATCCCGTGCATTTG+GGG - chr3_1:76595667-76595686 Msa0376480:intron 50.0%
ATCGCATGTCCCCAAATGCA+CGG + chr3_1:76595679-76595698 None:intergenic 50.0%
AAGGAGCTCAGGAAGGAAGA+TGG - chr3_1:76595854-76595873 Msa0376480:CDS 50.0%
!! CATGTTGCACAGAAGTGCTC+TGG - chr3_1:76596743-76596762 Msa0376480:CDS 50.0%
CACAATTCCAACGGTGGCTA+GGG + chr3_1:76596926-76596945 None:intergenic 50.0%
ACACAATTCCAACGGTGGCT+AGG + chr3_1:76596927-76596946 None:intergenic 50.0%
GCAGGGTCCACGTGAAGAAA+TGG - chr3_1:76593087-76593106 Msa0376480:intron 55.0%
TCTTTCGCGGCCGTGTTTGA+TGG - chr3_1:76593151-76593170 Msa0376480:intron 55.0%
CCCTCCATGGCCATCAAACA+CGG + chr3_1:76593164-76593183 None:intergenic 55.0%
! CCGTGTTTGATGGCCATGGA+GGG - chr3_1:76593161-76593180 Msa0376480:intron 55.0%
GGACAGAAGCAAACCCTCCA+TGG + chr3_1:76593177-76593196 None:intergenic 55.0%
TTGCTCCCATATGGACGGTG+AGG + chr3_1:76594590-76594609 None:intergenic 55.0%
CCGTCCATATGGGAGCAACA+AGG - chr3_1:76594592-76594611 Msa0376480:intron 55.0%
!! GAGGCCTTGTTGCTCCCATA+TGG + chr3_1:76594599-76594618 None:intergenic 55.0%
TGGTCTCCCTTTAGCCTGTC+AGG - chr3_1:76595071-76595090 Msa0376480:intron 55.0%
TCGCATGTCCCCAAATGCAC+GGG + chr3_1:76595678-76595697 None:intergenic 55.0%
GAAACTGCGTCTGAGCTGCA+AGG + chr3_1:76596213-76596232 None:intergenic 55.0%
TCTGCAGGACCAACGTACAC+AGG - chr3_1:76596470-76596489 Msa0376480:intron 55.0%
GTGCTTGCAGGAAGACAGAC+TGG - chr3_1:76596851-76596870 Msa0376480:CDS 55.0%
CGGCCGCGAAAGAGAAACCT+TGG + chr3_1:76593144-76593163 None:intergenic 60.0%
! GCCGTGTTTGATGGCCATGG+AGG - chr3_1:76593160-76593179 Msa0376480:intron 60.0%
GGGGAGGAGGAGGATGAATC+AGG - chr3_1:76593981-76594000 Msa0376480:intron 60.0%
TTCCAACGGTGGCTAGGGCT+TGG + chr3_1:76596921-76596940 None:intergenic 60.0%
! GCGGCCGTGTTTGATGGCCA+TGG - chr3_1:76593157-76593176 Msa0376480:intron 65.0%
GTCCAAGCCCTAGCCACCGT+TGG - chr3_1:76596916-76596935 Msa0376480:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 76592723 76597183 76592723 ID=Msa0376480;Name=Msa0376480
chr3_1 mRNA 76592723 76597183 76592723 ID=Msa0376480-mRNA-1;Parent=Msa0376480;Name=Msa0376480-mRNA-1;_AED=0.11;_eAED=0.11;_QI=158|0.9|0.90|1|1|1|11|199|402
chr3_1 exon 76592723 76593045 76592723 ID=Msa0376480-mRNA-1:exon:18251;Parent=Msa0376480-mRNA-1
chr3_1 exon 76593383 76593429 76593383 ID=Msa0376480-mRNA-1:exon:18250;Parent=Msa0376480-mRNA-1
chr3_1 exon 76593509 76593541 76593509 ID=Msa0376480-mRNA-1:exon:18249;Parent=Msa0376480-mRNA-1
chr3_1 exon 76593634 76593688 76593634 ID=Msa0376480-mRNA-1:exon:18248;Parent=Msa0376480-mRNA-1
chr3_1 exon 76593779 76593895 76593779 ID=Msa0376480-mRNA-1:exon:18247;Parent=Msa0376480-mRNA-1
chr3_1 exon 76594010 76594090 76594010 ID=Msa0376480-mRNA-1:exon:18246;Parent=Msa0376480-mRNA-1
chr3_1 exon 76594189 76594268 76594189 ID=Msa0376480-mRNA-1:exon:18245;Parent=Msa0376480-mRNA-1
chr3_1 exon 76595248 76595358 76595248 ID=Msa0376480-mRNA-1:exon:18244;Parent=Msa0376480-mRNA-1
chr3_1 exon 76595833 76595938 76595833 ID=Msa0376480-mRNA-1:exon:18243;Parent=Msa0376480-mRNA-1
chr3_1 exon 76596050 76596178 76596050 ID=Msa0376480-mRNA-1:exon:18242;Parent=Msa0376480-mRNA-1
chr3_1 exon 76596700 76597183 76596700 ID=Msa0376480-mRNA-1:exon:18241;Parent=Msa0376480-mRNA-1
chr3_1 five_prime_UTR 76597026 76597183 76597026 ID=Msa0376480-mRNA-1:five_prime_utr;Parent=Msa0376480-mRNA-1
chr3_1 CDS 76596700 76597025 76596700 ID=Msa0376480-mRNA-1:cds;Parent=Msa0376480-mRNA-1
chr3_1 CDS 76596050 76596178 76596050 ID=Msa0376480-mRNA-1:cds;Parent=Msa0376480-mRNA-1
chr3_1 CDS 76595833 76595938 76595833 ID=Msa0376480-mRNA-1:cds;Parent=Msa0376480-mRNA-1
chr3_1 CDS 76595248 76595358 76595248 ID=Msa0376480-mRNA-1:cds;Parent=Msa0376480-mRNA-1
chr3_1 CDS 76594189 76594268 76594189 ID=Msa0376480-mRNA-1:cds;Parent=Msa0376480-mRNA-1
chr3_1 CDS 76594010 76594090 76594010 ID=Msa0376480-mRNA-1:cds;Parent=Msa0376480-mRNA-1
chr3_1 CDS 76593779 76593895 76593779 ID=Msa0376480-mRNA-1:cds;Parent=Msa0376480-mRNA-1
chr3_1 CDS 76593634 76593688 76593634 ID=Msa0376480-mRNA-1:cds;Parent=Msa0376480-mRNA-1
chr3_1 CDS 76593509 76593541 76593509 ID=Msa0376480-mRNA-1:cds;Parent=Msa0376480-mRNA-1
chr3_1 CDS 76593383 76593429 76593383 ID=Msa0376480-mRNA-1:cds;Parent=Msa0376480-mRNA-1
chr3_1 CDS 76592922 76593045 76592922 ID=Msa0376480-mRNA-1:cds;Parent=Msa0376480-mRNA-1
chr3_1 three_prime_UTR 76592723 76592921 76592723 ID=Msa0376480-mRNA-1:three_prime_utr;Parent=Msa0376480-mRNA-1
Gene Sequence

>Msa0376480

ATGGCGTTATCAACACCACATATACAAAGATTCCTCTTAACTAAGCTCCATAAACACTCCACCTCTTCCAAATACATAAACACAAACAGAAACAGAAACAAAAACAGATTCATCAGAAGAAGAAACCGTTGCTGTTCTGCCATAGCCATTGATGCACCTTCATCATTGACAGACTCTCCTCCTATTAGATGGGGATCAGTATCTTTGCAGGGTCCACGTGAAGAAATGGAAGATGATATTATTCTTAGGCCAAATAGTCTCCAAGGTTTCTCTTTCGCGGCCGTGTTTGATGGCCATGGAGGGTTTGCTTCTGTCCAGTTCCTCAGGGATGAGTTATACAAGGAGTGTCTTGAAGCTCTACAAGGTGGGTTACTATTGCTTGAGAAAGATTTCAAAGCTGTTGAAGAAGCATTAAAGCAGGCATTTGTTAAAGCTGACATGAGGTTGTTAAAATGGCTTGAAATGAAAGGGGAGGAGGAGGATGAATCAGGTGCTACAGCAACTGCCATATTCCTAGGAAATAATAAGCTGCTAATTTCACATATTGGTGACTCATCTGTGGTTTTATGCAGATCTGGAAAACCAGAATTGCTAACTAGTCCTCACCGTCCATATGGGAGCAACAAGGCCTCTCTTCAAGAAATCAAAAGAATCAGAGAAGCAGGTGGATGGATTACCAACGGTAGGATTTGCGGAGATATTGCTGTATCCCGTGCATTTGGGGACATGCGATTCAAAACAAAGAAGATCGATGTTATCTACCTTTTGCGTGTGAAAAGGATGCTACAAAAAGGAGCTCAGGAAGGAAGATGGACAGAAAAGTTCATTTCCCGTGTACAGTTCAAAGATGACTTGGTTGTTGCACGCCCTGATATTTATCAAGTAACTCTTGGCTCAGATGCAGAATTTATAGTGTTAGCATCCGATGGCTTATGGGATTACATGAGCAGCTCAGACGCAGTTTCTTTTGTGAGGGATCAACTACGAAAACATGGAAACACACAGCTAGCTTGTGAATCCCTTGCACAAGTCGTTTTGGACCAACGTACACAGGATAATGTCAGCATTATAATTGCCGATCTAGGGAAGACAGACTGGAAGAGTGTACCACTGCAGCAACAAAATGTCACATTTGAGCTAGTCCAAGCCCTAGCCACCGTTGGAATTGTGTCTATTGGAATCTGGTTTTCATCACAGCTTTCTTTATAG
Protein sequence

>Msa0376480

MALSTPHIQRFLLTKLHKHSTSSKYINTNRNRNKNRFIRRRNRCCSAIAIDAPSSLTDSPPIRWGSVSLQGPREEMEDDIILRPNSLQGFSFAAVFDGHGGFASVQFLRDELYKECLEALQGGLLLLEKDFKAVEEALKQAFVKADMRLLKWLEMKGEEEDESGATATAIFLGNNKLLISHIGDSSVVLCRSGKPELLTSPHRPYGSNKASLQEIKRIREAGGWITNGRICGDIAVSRAFGDMRFKTKKIDVIYLLRVKRMLQKGAQEGRWTEKFISRVQFKDDLVVARPDIYQVTLGSDAEFIVLASDGLWDYMSSSDAVSFVRDQLRKHGNTQLACESLAQVVLDQRTQDNVSIIIADLGKTDWKSVPLQQQNVTFELVQALATVGIVSIGIWFSSQLSL*